AlfalfaGEDB | Msa1426230

M. sativa cultivar zhongmu-4 / Msa1426230

KEGG: K17808
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0071496 GO:0071944 GO:0098791
PFAM: PF03105.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426230	XP_013446199.1	99.104	781	7	0	1	781	1	781	0.0	1613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426230	sp\|Q93ZF5\|PHO11_ARATH	67.970	793	233	11	1	781	1	784	0.0	1050

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426230	A0A072TSP3	99.104	781	7	0	1	781	1	781	0.0	1613

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007370	Msa1426230	0.802019	6.843566e-49	-8.615850e-47
Msa1198970	Msa1426230	0.825089	5.667762e-54	-8.615850e-47
Msa1252500	Msa1426230	0.850553	1.576066e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426230	MtrunA17_Chr8g0368741	99.104	781	7	0	1	781	1	781	0.0	1613
Msa1426230	MtrunA17_Chr1g0187381	47.044	795	381	9	1	779	54	824	0.0	726
Msa1426230	MtrunA17_Chr1g0166651	45.823	790	399	7	1	779	1	772	0.0	698
Msa1426230	MtrunA17_Chr2g0302531	35.230	826	458	25	2	781	1	795	3.42e-146	448
Msa1426230	MtrunA17_Chr5g0417841	34.005	794	462	16	4	779	3	752	6.07e-145	444
Msa1426230	MtrunA17_Chr7g0217801	35.995	814	452	22	2	781	1	779	3.42e-144	442
Msa1426230	MtrunA17_Chr7g0217771	42.000	350	193	7	439	781	3	349	4.32e-85	274
Msa1426230	MtrunA17_Chr7g0217821	39.542	349	203	5	439	781	3	349	8.38e-78	254
Msa1426230	MtrunA17_Chr7g0217831	31.436	404	233	13	2	388	1	377	8.89e-39	148
Msa1426230	MtrunA17_Chr2g0322931	30.060	336	214	11	432	755	111	437	6.34e-25	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426230	AT1G68740.1	67.970	793	233	11	1	781	1	784	0.0	1050
Msa1426230	AT1G68740.2	65.877	718	225	10	1	706	1	710	0.0	918
Msa1426230	AT3G23430.1	45.714	805	375	13	1	773	1	775	0.0	703
Msa1426230	AT1G26730.1	37.786	786	443	15	2	780	1	747	4.95e-152	462
Msa1426230	AT3G29060.1	35.322	838	435	18	2	776	1	794	1.59e-151	462
Msa1426230	AT1G35350.1	36.226	795	444	19	2	780	1	748	1.41e-149	456
Msa1426230	AT1G14040.1	35.119	840	454	20	2	780	1	810	2.44e-147	452
Msa1426230	AT4G25350.1	35.019	791	452	11	2	780	1	741	1.06e-145	446
Msa1426230	AT1G69480.2	34.582	801	461	18	2	774	1	766	1.77e-140	433
Msa1426230	AT1G69480.1	34.582	801	461	18	2	774	1	766	1.77e-140	433

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Find 167 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTCTACCCTGTGCTT+AGG	0.566067	tig0025956:+53402	Msa1426230:CDS
AAAGGAACTCCAAGAATCCT+TGG	0.469620	tig0025956:+54783	Msa1426230:CDS
AAATGAAGAGGATAAATCAA+TGG	0.543222	tig0025956:+49673	Msa1426230:CDS
AAATTCTCTAAGCAATTTGA+GGG	0.530514	tig0025956:+47768	Msa1426230:CDS
AACTCTAGGCTCCTTAGCAT+TGG	0.493715	tig0025956:-54320	None:intergenic
AACTTTCTTAGTGATGAAAA+AGG	0.319449	tig0025956:-47924	None:intergenic
AACTTTGTACCAATTGTATT+GGG	0.326926	tig0025956:+54733	Msa1426230:CDS
AAGACTATGGATACTGCATG+AGG	0.618783	tig0025956:+54381	Msa1426230:CDS
AAGGAATTGAACTTGTGCAT+AGG	0.598938	tig0025956:-53764	None:intergenic
AAGGAGATGGTTTGATGAAG+GGG	0.566540	tig0025956:+54583	Msa1426230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGAACAAAGAGAGAAAA+TGG	+	tig0025956:47743-47762	Msa1426230:exon	30.0%
GAAATTCTCTAAGCAATTTG+AGG	+	tig0025956:47767-47786	Msa1426230:CDS	30.0%
TGATTATTGGCAACTTAAGA+AGG	+	tig0025956:47824-47843	Msa1426230:CDS	30.0%
TAATCATCAAATGAGTTCAG+TGG	+	tig0025956:47893-47912	Msa1426230:CDS	30.0%
CTTGTTTCATCAACTAGTAA+AGG	+	tig0025956:48111-48130	Msa1426230:CDS	30.0%
TTTAGACCAAAACCTCAATA+AGG	+	tig0025956:48203-48222	Msa1426230:CDS	30.0%
AGAAAGAGTTTCTTGATAGA+GGG	+	tig0025956:48250-48269	Msa1426230:CDS	30.0%
TTCATGGATAAGAAAGGTAA+AGG	+	tig0025956:48321-48340	Msa1426230:CDS	30.0%
TCATGGATAAGAAAGGTAAA+GGG	+	tig0025956:48322-48341	Msa1426230:CDS	30.0%
TCATCCACATTCTCTATTAA+CGG	+	tig0025956:48381-48400	Msa1426230:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025956	gene	47517	55826	47517	ID=Msa1426230;Name=Msa1426230
tig0025956	mRNA	47517	55826	47517	ID=Msa1426230-mRNA-1;Parent=Msa1426230;Name=Msa1426230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=245\|1\|1\|1\|1\|1\|14\|193\|781
tig0025956	exon	47517	47983	47517	ID=Msa1426230-mRNA-1:exon:4729;Parent=Msa1426230-mRNA-1
tig0025956	exon	48099	48402	48099	ID=Msa1426230-mRNA-1:exon:4730;Parent=Msa1426230-mRNA-1
tig0025956	exon	49597	49978	49597	ID=Msa1426230-mRNA-1:exon:4731;Parent=Msa1426230-mRNA-1
tig0025956	exon	50259	50307	50259	ID=Msa1426230-mRNA-1:exon:4732;Parent=Msa1426230-mRNA-1
tig0025956	exon	50413	50484	50413	ID=Msa1426230-mRNA-1:exon:4733;Parent=Msa1426230-mRNA-1
tig0025956	exon	51057	51189	51057	ID=Msa1426230-mRNA-1:exon:4734;Parent=Msa1426230-mRNA-1
tig0025956	exon	53303	53423	53303	ID=Msa1426230-mRNA-1:exon:4735;Parent=Msa1426230-mRNA-1
tig0025956	exon	53555	53804	53555	ID=Msa1426230-mRNA-1:exon:4736;Parent=Msa1426230-mRNA-1
tig0025956	exon	53942	54046	53942	ID=Msa1426230-mRNA-1:exon:4737;Parent=Msa1426230-mRNA-1
tig0025956	exon	54157	54201	54157	ID=Msa1426230-mRNA-1:exon:4738;Parent=Msa1426230-mRNA-1
tig0025956	exon	54317	54469	54317	ID=Msa1426230-mRNA-1:exon:4739;Parent=Msa1426230-mRNA-1
tig0025956	exon	54578	54856	54578	ID=Msa1426230-mRNA-1:exon:4740;Parent=Msa1426230-mRNA-1
tig0025956	exon	55290	55426	55290	ID=Msa1426230-mRNA-1:exon:4741;Parent=Msa1426230-mRNA-1
tig0025956	exon	55540	55826	55540	ID=Msa1426230-mRNA-1:exon:4742;Parent=Msa1426230-mRNA-1
tig0025956	five_prime_UTR	47517	47761	47517	ID=Msa1426230-mRNA-1:five_prime_utr;Parent=Msa1426230-mRNA-1
tig0025956	CDS	47762	47983	47762	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	48099	48402	48099	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	49597	49978	49597	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	50259	50307	50259	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	50413	50484	50413	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	51057	51189	51057	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	53303	53423	53303	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	53555	53804	53555	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	53942	54046	53942	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	54157	54201	54157	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	54317	54469	54317	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	54578	54856	54578	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	55290	55426	55290	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	CDS	55540	55633	55540	ID=Msa1426230-mRNA-1:cds;Parent=Msa1426230-mRNA-1
tig0025956	three_prime_UTR	55634	55826	55634	ID=Msa1426230-mRNA-1:three_prime_utr;Parent=Msa1426230-mRNA-1

Gene Sequence

>Msa1426230

ATGGTGAAATTCTCTAAGCAATTTGAGGGACAACTCATTCCAGAATGGAAAGAAGCTTTTGTTGATTATTGGCAACTTAAGAAGGATATTAAAAGAATTCAACTTCTTAACAATACCAACAAAAAACCAAATAATCATCAAATGAGTTCAGTGGTGAAGTCACCTTTTTCATCACTAAGAAAGTTCTTTTCATTTCAACAAAGAGACCATGAACCAATTCAAGTTCATAGGAAACTTGTTTCATCAACTAGTAAAGGTGACATGTATGAGACACAACTACTAGACCAATTTGCTGACACTGATGCTACAAAAGAATTTTTTGCATGTTTAGACCAAAACCTCAATAAGGTTAATAAATTCTATAGGACAAAGGAGAAAGAGTTTCTTGATAGAGGGGAGTCCTTGAAAAAACAAATGGATATTCTTATTGAGCTCAAATCTGCATTCATGGATAAGAAAGGTAAAGGGAACTCTTCTCACTATTCCAAGGAGGAGGAATCTGTCTCATCCACATTCTCTATTAACGAGGAAGACTCTGTTAGGAGCAGAGAACAAACAGAGGATTTGGAGAAAATAGAAGAGAATTTTACTGAATCAAATGAAAATGAAGAGGATAAATCAATGGATTTGAAATGGGAAGATGGTAAATTGAGGACATTATCCGGCCATTTTCTTAGTGGGCAAGGAAAGAATGTGAGGATAAACATTCCTTTGACAACACCTTCTCAAACCTTTTCAGAAATTAGTTACCTTGTAATGGAAGATTTGTTCAACAAGTCTTCAAGAAAATGCAATCCAGAAGGTGGTGTGCTTCGTGTTAATAAAACAAGGTTACATCATGCAGAAAAGATGATCAAAGGTGGTTTCATTGAGCTTTATAAGGGCCTAGGATATTTGAATGATTATAGGAATTTGAACCTGCTTGCATTTATAAAGATTCTGAAGAAATTTGACAAGGTCACAGAAAAGCAAATTCTTCCAATCTATCTCAAAGTAGTTGAGAGTTCATATTTCAACAACTCAGACAAGGTGGTGAAGTTCATGGACGAAGTGGAGGAACTATTTGTCAAGAATTTTGCTAAAGGAGATCATAGAAAGGCAATGAAATACCTTAGACCAATTCATCATAAAAAAGAATCACATGCAATTACTTTCTTCATTGGACTATTTACTGGATGCTTTTGGGCACTTTTTGGTGCATATGTTTTAATGGCTCATCTTACTGGACTGTACAAAAAACACCAAAATTCAGTCTACATGGAAACTGTCTACCCTGTGCTTAGTGTGTTTAGTCTCATGTTTCTACATTTCTTCCTCTATGGCTGCAACATTATTGCATGGAGAAAGACTCGTATAAACTACAGATTTATTTTCGAGATAGTTCCAACTAAGGAACTAAAGTACAGTGATGTATTCTTGATTTGTACAATGTCTATGACTGCTGTGGTTGGAGTCTTGCTTTTTCATTTGACTCTACTCACAAAAGGGTATTCCTATGCACAAGTTCAATTCCTTCTTGGCCTACTTTTTCTGGCCTTCTTACTATTACTTGTATGCCCGTTCAACATTATATACCGGTCAAGCCGATACCACTTCCTTTGTGTGATAAGGAACATAATTTGGTCACCTCTTTATAAGGTTCTTATGCTGGACTTTTTTATGGCTGATCAACTTTGCAGTCAGGTTCCAATGCTAAGGAGCCTAGAGTTTATGGCATGTTACTATATAACTGGGAGCTATAAGACTCAAGACTATGGATACTGCATGAGGGTAAAACAATATAGAGATCTTTTCTATGCAGTGTCCTTTCTGCCATATTATTGGAGAGCAATGCAGTGTGCAAGGAGATGGTTTGATGAAGGGGACACAAGTCACCTTATCAATCTGGGCAAATATGTTTCAGCTATGTTAGCTGCAGGTGCTAAAGTTGCATATGAAAAAGATAGAAGTGTTGGATGGTTATGTGTTGTTGTGATCATGTCAAGTATAGCAACTTTGTACCAATTGTATTGGGACTTTGTAAGGGATTGGGGTTTGTTACAAAGGAACTCCAAGAATCCTTGGTTAAGAAATGAATTGATGCTAAGAAGAAAAGCTATTTACTACTTGTCAATGGTATTAAACATTACTCTGAGGCTTGCTTGGTTGCAAACTGTTCTCCATTCAAGTTTTGAAAATGTTGACTATAGAGTAACAAGCTTATTTTTAGCAGCACTTGAAGTTATTAGAAGAGGACTATGGAATTTCTACAGATTGGAACATGAGCATCTAAATAATGCTGGCAAGTTTAGAGCAGTGAAGGCAGTGCCACTTCCTTTTCATGAAGTGGAGGATGAAGAAGACTAA

Protein sequence

>Msa1426230

MVKFSKQFEGQLIPEWKEAFVDYWQLKKDIKRIQLLNNTNKKPNNHQMSSVVKSPFSSLRKFFSFQQRDHEPIQVHRKLVSSTSKGDMYETQLLDQFADTDATKEFFACLDQNLNKVNKFYRTKEKEFLDRGESLKKQMDILIELKSAFMDKKGKGNSSHYSKEEESVSSTFSINEEDSVRSREQTEDLEKIEENFTESNENEEDKSMDLKWEDGKLRTLSGHFLSGQGKNVRINIPLTTPSQTFSEISYLVMEDLFNKSSRKCNPEGGVLRVNKTRLHHAEKMIKGGFIELYKGLGYLNDYRNLNLLAFIKILKKFDKVTEKQILPIYLKVVESSYFNNSDKVVKFMDEVEELFVKNFAKGDHRKAMKYLRPIHHKKESHAITFFIGLFTGCFWALFGAYVLMAHLTGLYKKHQNSVYMETVYPVLSVFSLMFLHFFLYGCNIIAWRKTRINYRFIFEIVPTKELKYSDVFLICTMSMTAVVGVLLFHLTLLTKGYSYAQVQFLLGLLFLAFLLLLVCPFNIIYRSSRYHFLCVIRNIIWSPLYKVLMLDFFMADQLCSQVPMLRSLEFMACYYITGSYKTQDYGYCMRVKQYRDLFYAVSFLPYYWRAMQCARRWFDEGDTSHLINLGKYVSAMLAAGAKVAYEKDRSVGWLCVVVIMSSIATLYQLYWDFVRDWGLLQRNSKNPWLRNELMLRRKAIYYLSMVLNITLRLAWLQTVLHSSFENVDYRVTSLFLAALEVIRRGLWNFYRLEHEHLNNAGKFRAVKAVPLPFHEVEDEED*