Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007370 | XP_013465770.1 | 97.727 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 0.0 | 953 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007370 | sp|Q9SL95|MOT1_ARATH | 66.287 | 439 | 132 | 4 | 39 | 475 | 23 | 447 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0007370 | -0.810040 | 1.404652e-50 | -8.615850e-47 |
| Msa0007370 | Msa0011440 | -0.813968 | 1.956916e-51 | -8.615850e-47 |
| Msa0007370 | Msa0011450 | -0.803946 | 2.734126e-49 | -8.615850e-47 |
| Msa0007370 | Msa0017300 | -0.809855 | 1.539035e-50 | -8.615850e-47 |
| Msa0007370 | Msa0055830 | 0.930912 | 8.197273e-94 | -8.615850e-47 |
| Msa0007370 | Msa0055940 | 0.968210 | 2.357289e-128 | -8.615850e-47 |
| Msa0007370 | Msa0065670 | -0.808667 | 2.767917e-50 | -8.615850e-47 |
| Msa0007370 | Msa0111110 | -0.806383 | 8.448021e-50 | -8.615850e-47 |
| Msa0007370 | Msa0151380 | -0.805479 | 1.308978e-49 | -8.615850e-47 |
| Msa0007370 | Msa0151510 | -0.825992 | 3.464273e-54 | -8.615850e-47 |
| Msa0007370 | Msa0198990 | 0.849728 | 2.684374e-60 | -8.615850e-47 |
| Msa0007370 | Msa0241750 | 0.860176 | 2.479612e-63 | -8.615850e-47 |
| Msa0007370 | Msa0261350 | -0.802055 | 6.726737e-49 | -8.615850e-47 |
| Msa0007370 | Msa0262350 | -0.802809 | 4.702914e-49 | -8.615850e-47 |
| Msa0007370 | Msa0279810 | 0.820306 | 7.353410e-53 | -8.615850e-47 |
| Msa0007370 | Msa0313900 | 0.808705 | 2.715595e-50 | -8.615850e-47 |
| Msa0007370 | Msa0319220 | 0.824993 | 5.973354e-54 | -8.615850e-47 |
| Msa0007370 | Msa0340700 | -0.800792 | 1.220529e-48 | -8.615850e-47 |
| Msa0007370 | Msa0412580 | -0.802940 | 4.420072e-49 | -8.615850e-47 |
| Msa0007370 | Msa0412790 | 0.824682 | 7.069835e-54 | -8.615850e-47 |
| Msa0007370 | Msa0420610 | 0.806210 | 9.190165e-50 | -8.615850e-47 |
| Msa0007370 | Msa0512630 | 0.817861 | 2.647056e-52 | -8.615850e-47 |
| Msa0007370 | Msa0725580 | 0.809219 | 2.107867e-50 | -8.615850e-47 |
| Msa0007370 | Msa0742370 | -0.804045 | 2.608594e-49 | -8.615850e-47 |
| Msa0007370 | Msa0797580 | 0.801204 | 1.005474e-48 | -8.615850e-47 |
| Msa0007370 | Msa0862480 | -0.803688 | 3.093807e-49 | -8.615850e-47 |
| Msa0007370 | Msa0931680 | 0.800200 | 1.611181e-48 | -8.615850e-47 |
| Msa0007370 | Msa0935840 | -0.801340 | 9.430482e-49 | -8.615850e-47 |
| Msa0007370 | Msa1034950 | 0.804050 | 2.602329e-49 | -8.615850e-47 |
| Msa0007370 | Msa1075010 | 0.803004 | 4.287039e-49 | -8.615850e-47 |
| Msa0007370 | Msa1129120 | -0.802873 | 4.563262e-49 | -8.615850e-47 |
| Msa0007370 | Msa1193940 | 0.807381 | 5.197954e-50 | -8.615850e-47 |
| Msa0007370 | Msa1203650 | 0.816775 | 4.647907e-52 | -8.615850e-47 |
| Msa0007370 | Msa1368390 | 0.803829 | 2.891787e-49 | -8.615850e-47 |
| Msa0007370 | Msa1372000 | 0.810146 | 1.332879e-50 | -8.615850e-47 |
| Msa0007370 | Msa1388720 | -0.802242 | 6.157512e-49 | -8.615850e-47 |
| Msa0007370 | Msa1407840 | 0.802936 | 4.427883e-49 | -8.615850e-47 |
| Msa0007370 | Msa1422860 | 0.816078 | 6.656115e-52 | -8.615850e-47 |
| Msa0007370 | Msa1426230 | 0.802019 | 6.843566e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007370 | MtrunA17_Chr1g0148451 | 97.727 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 0.0 | 953 |
| Msa0007370 | MtrunA17_Chr3g0105081 | 81.443 | 485 | 85 | 4 | 1 | 482 | 1 | 483 | 0.0 | 749 |
| Msa0007370 | MtrunA17_Chr1g0148521 | 76.160 | 474 | 92 | 3 | 1 | 473 | 1 | 454 | 0.0 | 719 |
| Msa0007370 | MtrunA17_Chr3g0138591 | 72.809 | 445 | 114 | 2 | 38 | 481 | 20 | 458 | 0.0 | 629 |
| Msa0007370 | MtrunA17_Chr4g0003941 | 56.325 | 419 | 176 | 3 | 52 | 467 | 37 | 451 | 9.52e-166 | 476 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007370 | AT2G25680.1 | 66.287 | 439 | 132 | 4 | 39 | 475 | 23 | 447 | 0.0 | 580 |
| Msa0007370 | AT1G80310.1 | 55.501 | 409 | 169 | 6 | 52 | 458 | 31 | 428 | 7.40e-140 | 410 |
Find 118 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTCTGCACTGCATCTT+TGG | 0.095650 | 1_1:+10577884 | None:intergenic |
| CTTCATCACTCCTTTGAATT+TGG | 0.127643 | 1_1:+10577181 | None:intergenic |
| GTAACTGAAAATTCCCTTTC+AGG | 0.152803 | 1_1:+10576889 | None:intergenic |
| GTTGTACATGAAATTAAATT+TGG | 0.217740 | 1_1:-10577048 | Msa0007370:CDS |
| CTCTTTCTTCAAATTTAGTT+TGG | 0.243561 | 1_1:+10576430 | None:intergenic |
| TGATGAATTTAGTTGGTTCT+TGG | 0.259940 | 1_1:-10576843 | Msa0007370:CDS |
| CTTTGTGTTGGGAATAGTTT+TGG | 0.270595 | 1_1:-10577091 | Msa0007370:CDS |
| GGAGTGATTTCATGAGCTTC+TGG | 0.283217 | 1_1:+10577945 | None:intergenic |
| TCAAAATGGGCTGAAATTAA+TGG | 0.293645 | 1_1:-10577840 | Msa0007370:CDS |
| CTTCCAAAGTCTAAATCTTT+AGG | 0.296255 | 1_1:-10577336 | Msa0007370:CDS |
| TGAAATTCACTAAACAAAAT+TGG | 0.301984 | 1_1:-10577005 | Msa0007370:CDS |
| GGAGGGTGTGTGGCACTTCT+TGG | 0.303917 | 1_1:-10576751 | Msa0007370:CDS |
| CTTGCTAGGGTTCTACTTCT+AGG | 0.308575 | 1_1:-10576300 | Msa0007370:three_prime_UTR |
| ATCATCACTGGTGTCATATA+TGG | 0.310944 | 1_1:-10577606 | Msa0007370:CDS |
| CTAGCAGGACAGTATAAATT+TGG | 0.316271 | 1_1:-10576784 | Msa0007370:CDS |
| GTAGTAGGAACTACTATTTA+TGG | 0.316279 | 1_1:-10576231 | Msa0007370:three_prime_UTR |
| TGCTCCGGAAGATGGTAATT+TGG | 0.316459 | 1_1:-10577208 | Msa0007370:CDS |
| AGACCTTGGTTTGGTTTAGA+TGG | 0.323003 | 1_1:-10577309 | Msa0007370:CDS |
| CGCGGCAGCGATTGACTTCA+TGG | 0.332278 | 1_1:+10577563 | None:intergenic |
| TATTTGCACTGCTGTTTCAT+TGG | 0.337708 | 1_1:-10576566 | Msa0007370:CDS |
| TTGGTTTGGTTTAGATGGTT+TGG | 0.344318 | 1_1:-10577304 | Msa0007370:CDS |
| TTTGAATTGAAGGAGGGTTT+TGG | 0.351391 | 1_1:+10577976 | None:intergenic |
| TGCACTGCTGTTTCATTGGT+TGG | 0.352590 | 1_1:-10576562 | Msa0007370:CDS |
| AGTGTCTGCACTGCATCTTT+GGG | 0.354736 | 1_1:+10577885 | None:intergenic |
| CTAAACCAAACCAAGGTCTT+TGG | 0.362770 | 1_1:+10577313 | None:intergenic |
| GCCTTATCAGACAAAGATTT+CGG | 0.369692 | 1_1:-10577540 | Msa0007370:CDS |
| AATTTAGTTGGTTCTTGGTT+TGG | 0.373157 | 1_1:-10576838 | Msa0007370:CDS |
| CTAAACCATCATACTCAATA+TGG | 0.375739 | 1_1:-10578003 | Msa0007370:exon |
| ATTCCCCTCACAACAGATAA+AGG | 0.381862 | 1_1:+10577423 | None:intergenic |
| CCATCCAAATTACCATCTTC+CGG | 0.384151 | 1_1:+10577204 | None:intergenic |
| TCCTACTACTGCTAACTATA+TGG | 0.386968 | 1_1:+10576245 | None:intergenic |
| TATTATTGAGAGTAAACATT+AGG | 0.398520 | 1_1:+10576172 | None:intergenic |
| ATTGACTTCATGGGCTGAAC+AGG | 0.399970 | 1_1:+10577573 | None:intergenic |
| ACTAAACAAAATTGGAAGAA+AGG | 0.400604 | 1_1:-10576997 | Msa0007370:CDS |
| GGATCTGATGTTTGAATTGA+AGG | 0.402916 | 1_1:+10577966 | None:intergenic |
| ATAAACCACTTTCTACCATA+TGG | 0.403694 | 1_1:-10576465 | Msa0007370:CDS |
| GTTGGATCAAGTGCTGCTCT+TGG | 0.405444 | 1_1:-10576544 | Msa0007370:CDS |
| TGCAAAATTGGTATTGGGAT+TGG | 0.405472 | 1_1:-10576725 | Msa0007370:CDS |
| ATATAGGCTTTGTAACCAAT+TGG | 0.406160 | 1_1:+10578057 | None:intergenic |
| GTATATAGTGGCTAAAATAT+AGG | 0.407627 | 1_1:+10578041 | None:intergenic |
| GAATGGTTTGTTGGAGGTGT+TGG | 0.409771 | 1_1:+10577924 | None:intergenic |
| CTTGTGGCTGAATGGTTTGT+TGG | 0.410139 | 1_1:+10577915 | None:intergenic |
| GGTGGCGTGCTCTTTGTTCT+CGG | 0.412718 | 1_1:-10577483 | Msa0007370:CDS |
| CTCTTTGTTCTCGGTATCAC+AGG | 0.413494 | 1_1:-10577474 | Msa0007370:CDS |
| TGGCCTAAAGATTTAGACTT+TGG | 0.414440 | 1_1:+10577333 | None:intergenic |
| TTCATTACTTCTATTGAAGA+TGG | 0.415265 | 1_1:+10577024 | None:intergenic |
| TGTTACTTAAGCTAAGGAAT+TGG | 0.417510 | 1_1:-10576495 | Msa0007370:CDS |
| GTGCCAACTTGTCATGGTGC+TGG | 0.439717 | 1_1:-10576811 | Msa0007370:CDS |
| ATCTTTGGGTTTGAAACTTG+TGG | 0.442751 | 1_1:+10577899 | None:intergenic |
| AGAAAAGAATGTGAATTGTT+TGG | 0.443386 | 1_1:+10578080 | None:intergenic |
| TAACTGAAAATTCCCTTTCA+GGG | 0.444301 | 1_1:+10576890 | None:intergenic |
| AACACACCTAAAATCCCAAC+TGG | 0.446139 | 1_1:+10576664 | None:intergenic |
| TTGTCATGTGAGGACTTGCT+AGG | 0.447851 | 1_1:-10576314 | Msa0007370:three_prime_UTR |
| TAGTGGTTGTTGCGGTGCTC+CGG | 0.457719 | 1_1:-10577223 | Msa0007370:CDS |
| GCCGAAATCTTTGTCTGATA+AGG | 0.459735 | 1_1:+10577539 | None:intergenic |
| GTTGGGTTGATGAATTTAGT+TGG | 0.465580 | 1_1:-10576850 | Msa0007370:CDS |
| TTAGGCCAAAGACCTTGGTT+TGG | 0.469202 | 1_1:-10577318 | Msa0007370:CDS |
| TATAAATTTGGTGGAAGAAG+TGG | 0.472717 | 1_1:-10576772 | Msa0007370:CDS |
| ATTGTGATTGTTAATGGAGC+TGG | 0.477827 | 1_1:-10577255 | Msa0007370:CDS |
| ATTCCAGCTGTCATTATCTC+TGG | 0.479556 | 1_1:+10577513 | None:intergenic |
| CATCAATTTCAGTGACAGTT+GGG | 0.484371 | 1_1:-10576867 | Msa0007370:CDS |
| GTTTGAAACTTGTGGCTGAA+TGG | 0.492699 | 1_1:+10577907 | None:intergenic |
| AGAGTGAGAGCCAAGACTAT+AGG | 0.494228 | 1_1:+10577789 | None:intergenic |
| GTGGCTGAATGGTTTGTTGG+AGG | 0.495034 | 1_1:+10577918 | None:intergenic |
| AACATTGACAATGGAAGTTG+TGG | 0.498635 | 1_1:+10576955 | None:intergenic |
| GTATGCCATATTGAGTATGA+TGG | 0.500400 | 1_1:+10577998 | None:intergenic |
| AATGGTGCCATGGGTGATCT+TGG | 0.501937 | 1_1:-10577822 | Msa0007370:CDS |
| GGTGCTGTGCCAACTTGTCA+TGG | 0.504890 | 1_1:-10576817 | Msa0007370:CDS |
| ACATCAATTTCAGTGACAGT+TGG | 0.505075 | 1_1:-10576868 | Msa0007370:CDS |
| TAGCAAAGAAGATTCATTTG+TGG | 0.510722 | 1_1:-10576593 | Msa0007370:CDS |
| AATCTTTAGGCCAAAGACCT+TGG | 0.514844 | 1_1:-10577323 | Msa0007370:CDS |
| CATGGTGCTGGTGGACTAGC+AGG | 0.515807 | 1_1:-10576799 | Msa0007370:CDS |
| TTTATGTGTTACTTAAGCTA+AGG | 0.517035 | 1_1:-10576501 | Msa0007370:CDS |
| TGTCATGTGAGGACTTGCTA+GGG | 0.517780 | 1_1:-10576313 | Msa0007370:three_prime_UTR |
| CCAACTTGTCATGGTGCTGG+TGG | 0.520067 | 1_1:-10576808 | Msa0007370:CDS |
| CTGATGTTTGAATTGAAGGA+GGG | 0.521335 | 1_1:+10577970 | None:intergenic |
| GATTCCTTTATCTGTTGTGA+GGG | 0.522285 | 1_1:-10577427 | Msa0007370:CDS |
| TACATATATACCTATAGTCT+TGG | 0.528025 | 1_1:-10577799 | Msa0007370:CDS |
| ATTTGGATGGCCAAATTCAA+AGG | 0.528754 | 1_1:-10577191 | Msa0007370:CDS |
| TCAATGTGGTGCCAAGGTTG+AGG | 0.535731 | 1_1:+10577757 | None:intergenic |
| TGGTTCCATATGGTAGAAAG+TGG | 0.540368 | 1_1:+10576460 | None:intergenic |
| GGCTGAAATTAATGGTGCCA+TGG | 0.548607 | 1_1:-10577832 | Msa0007370:CDS |
| ACCATATAGTTAGCAGTAGT+AGG | 0.551028 | 1_1:-10576246 | Msa0007370:three_prime_UTR |
| GCGGCAGCGATTGACTTCAT+GGG | 0.552618 | 1_1:+10577564 | None:intergenic |
| CAATTGTTTAGAGTATATAG+TGG | 0.553449 | 1_1:+10578029 | None:intergenic |
| CCGGAAGATGGTAATTTGGA+TGG | 0.556838 | 1_1:-10577204 | Msa0007370:CDS |
| GCAGGACAGTATAAATTTGG+TGG | 0.559975 | 1_1:-10576781 | Msa0007370:CDS |
| CAAATTCAAAGGAGTGATGA+AGG | 0.562407 | 1_1:-10577180 | Msa0007370:CDS |
| TGTTGCGGTGCTCCGGAAGA+TGG | 0.568204 | 1_1:-10577216 | Msa0007370:CDS |
| TGATTCCTTTATCTGTTGTG+AGG | 0.568857 | 1_1:-10577428 | Msa0007370:CDS |
| ATGACAGCTGGAATCTTGAC+CGG | 0.569949 | 1_1:-10577504 | Msa0007370:CDS |
| CCACCAGCACCATGACAAGT+TGG | 0.570149 | 1_1:+10576808 | None:intergenic |
| CTTGGCTCTCACTCTAGCTA+AGG | 0.577324 | 1_1:-10577781 | Msa0007370:CDS |
| CATGAAGTCAATCGCTGCCG+CGG | 0.579851 | 1_1:-10577562 | Msa0007370:CDS |
| AAATTTGGTGGAAGAAGTGG+AGG | 0.580866 | 1_1:-10576769 | Msa0007370:CDS |
| ATTCCTTTATCTGTTGTGAG+GGG | 0.583159 | 1_1:-10577426 | Msa0007370:CDS |
| CTAGCTAAGGACCTCAACCT+TGG | 0.586821 | 1_1:-10577768 | Msa0007370:CDS |
| GGTGTCTACAACATCATCAC+TGG | 0.588180 | 1_1:-10577618 | Msa0007370:CDS |
| TATCACAGGATTGATGCAGC+TGG | 0.589104 | 1_1:-10577460 | Msa0007370:CDS |
| TCTGATGTTTGAATTGAAGG+AGG | 0.598428 | 1_1:+10577969 | None:intergenic |
| AATAAAACAAGCACAAACAA+TGG | 0.599249 | 1_1:+10577275 | None:intergenic |
| ACAAAGACTATAAAAGCAGA+AGG | 0.601245 | 1_1:+10577108 | None:intergenic |
| GTGCCAGAGATAATGACAGC+TGG | 0.605476 | 1_1:-10577516 | Msa0007370:CDS |
| TGGAAGAAGTGGAGGGTGTG+TGG | 0.611929 | 1_1:-10576761 | Msa0007370:CDS |
| GAGAACAAAGAGCACGCCAC+CGG | 0.612127 | 1_1:+10577485 | None:intergenic |
| GATAGCATACATAAGTTACA+TGG | 0.625846 | 1_1:+10576200 | None:intergenic |
| ATCTTTGTCTGATAAGGCCG+CGG | 0.630622 | 1_1:+10577545 | None:intergenic |
| ACAGAGTTCAACATTGACAA+TGG | 0.640308 | 1_1:+10576946 | None:intergenic |
| GCTGAAATTAATGGTGCCAT+GGG | 0.646415 | 1_1:-10577831 | Msa0007370:CDS |
| TTCATGGGCTGAACAGGCAT+AGG | 0.650381 | 1_1:+10577579 | None:intergenic |
| ATTCAAAGGAGTGATGAAGG+TGG | 0.653705 | 1_1:-10577177 | Msa0007370:CDS |
| TGAAAATCAATGTGGTGCCA+AGG | 0.655634 | 1_1:+10577751 | None:intergenic |
| ATATGTACCAAGATCACCCA+TGG | 0.656064 | 1_1:+10577815 | None:intergenic |
| AGGGGAATTCAACTAGCACA+AGG | 0.671542 | 1_1:-10577408 | Msa0007370:CDS |
| ACAGCTGGAATCTTGACCGG+TGG | 0.675343 | 1_1:-10577501 | Msa0007370:CDS |
| AATTTGGTGGAAGAAGTGGA+GGG | 0.686532 | 1_1:-10576768 | Msa0007370:CDS |
| AAACCATCTAAACCAAACCA+AGG | 0.711313 | 1_1:+10577306 | None:intergenic |
| TATACCGTTGAAAATCAATG+TGG | 0.718574 | 1_1:+10577743 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTATTGTGATTGTTAA+TGG | - | chr1_1:10577022-10577041 | Msa0007370:CDS | 20.0% |
| !! | GTTGTACATGAAATTAAATT+TGG | - | chr1_1:10577235-10577254 | Msa0007370:CDS | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | chr1_1:10577278-10577297 | Msa0007370:CDS | 20.0% |
| !!! | TGTTTTATTGTGATTGTTAA+TGG | - | chr1_1:10577022-10577041 | Msa0007370:CDS | 20.0% |
| !! | GTTGTACATGAAATTAAATT+TGG | - | chr1_1:10577235-10577254 | Msa0007370:CDS | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | chr1_1:10577278-10577297 | Msa0007370:CDS | 20.0% |
| ! | AGAAAAGAATGTGAATTGTT+TGG | + | chr1_1:10576206-10576225 | None:intergenic | 25.0% |
| ! | GTATATAGTGGCTAAAATAT+AGG | + | chr1_1:10576245-10576264 | None:intergenic | 25.0% |
| !! | CAATTGTTTAGAGTATATAG+TGG | + | chr1_1:10576257-10576276 | None:intergenic | 25.0% |
| ! | TACATATATACCTATAGTCT+TGG | - | chr1_1:10576484-10576503 | Msa0007370:CDS | 25.0% |
| ! | TTTCTTATGTAATTCATGTC+CGG | - | chr1_1:10576633-10576652 | Msa0007370:CDS | 25.0% |
| ! | AATAAAACAAGCACAAACAA+TGG | + | chr1_1:10577011-10577030 | None:intergenic | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | chr1_1:10577262-10577281 | None:intergenic | 25.0% |
| ! | ACTAAACAAAATTGGAAGAA+AGG | - | chr1_1:10577286-10577305 | Msa0007370:CDS | 25.0% |
| !!! | TGGAAGAAAGGTTTTATTAA+AGG | - | chr1_1:10577298-10577317 | Msa0007370:CDS | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | chr1_1:10577782-10577801 | Msa0007370:CDS | 25.0% |
| !!! | AAATTTAGTTTGGACTTTTC+TGG | + | chr1_1:10577846-10577865 | None:intergenic | 25.0% |
| ! | CTCTTTCTTCAAATTTAGTT+TGG | + | chr1_1:10577856-10577875 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTATTGTCATGTG+AGG | - | chr1_1:10577959-10577978 | Msa0007370:CDS | 25.0% |
| ! | AGAAAAGAATGTGAATTGTT+TGG | + | chr1_1:10576206-10576225 | None:intergenic | 25.0% |
| ! | GTATATAGTGGCTAAAATAT+AGG | + | chr1_1:10576245-10576264 | None:intergenic | 25.0% |
| !! | CAATTGTTTAGAGTATATAG+TGG | + | chr1_1:10576257-10576276 | None:intergenic | 25.0% |
| ! | TACATATATACCTATAGTCT+TGG | - | chr1_1:10576484-10576503 | Msa0007370:CDS | 25.0% |
| ! | TTTCTTATGTAATTCATGTC+CGG | - | chr1_1:10576633-10576652 | Msa0007370:CDS | 25.0% |
| ! | AATAAAACAAGCACAAACAA+TGG | + | chr1_1:10577011-10577030 | None:intergenic | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | chr1_1:10577262-10577281 | None:intergenic | 25.0% |
| ! | ACTAAACAAAATTGGAAGAA+AGG | - | chr1_1:10577286-10577305 | Msa0007370:CDS | 25.0% |
| !!! | TGGAAGAAAGGTTTTATTAA+AGG | - | chr1_1:10577298-10577317 | Msa0007370:CDS | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | chr1_1:10577782-10577801 | Msa0007370:CDS | 25.0% |
| !!! | AAATTTAGTTTGGACTTTTC+TGG | + | chr1_1:10577846-10577865 | None:intergenic | 25.0% |
| ! | CTCTTTCTTCAAATTTAGTT+TGG | + | chr1_1:10577856-10577875 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTATTGTCATGTG+AGG | - | chr1_1:10577959-10577978 | Msa0007370:CDS | 25.0% |
| ! | TTCACATTCTTTTCTCCAAT+TGG | - | chr1_1:10576211-10576230 | Msa0007370:three_prime_UTR | 30.0% |
| ! | ATATAGGCTTTGTAACCAAT+TGG | + | chr1_1:10576229-10576248 | None:intergenic | 30.0% |
| CTAAACCATCATACTCAATA+TGG | - | chr1_1:10576280-10576299 | Msa0007370:three_prime_UTR | 30.0% | |
| !!! | ACTTTGTTTTCCGTTCAAAA+TGG | - | chr1_1:10576429-10576448 | Msa0007370:exon | 30.0% |
| !!! | CTTTGTTTTCCGTTCAAAAT+GGG | - | chr1_1:10576430-10576449 | Msa0007370:exon | 30.0% |
| ! | TAATTTCAGCCCATTTTGAA+CGG | + | chr1_1:10576442-10576461 | None:intergenic | 30.0% |
| !! | TCAAAATGGGCTGAAATTAA+TGG | - | chr1_1:10576443-10576462 | Msa0007370:exon | 30.0% |
| TATACCGTTGAAAATCAATG+TGG | + | chr1_1:10576543-10576562 | None:intergenic | 30.0% | |
| CTTCCAAAGTCTAAATCTTT+AGG | - | chr1_1:10576947-10576966 | Msa0007370:CDS | 30.0% | |
| ACAAAGACTATAAAAGCAGA+AGG | + | chr1_1:10577178-10577197 | None:intergenic | 30.0% | |
| ! | TGCTTTTATAGTCTTTGTGT+TGG | - | chr1_1:10577180-10577199 | Msa0007370:CDS | 30.0% |
| ! | GCTTTTATAGTCTTTGTGTT+GGG | - | chr1_1:10577181-10577200 | Msa0007370:CDS | 30.0% |
| TAACTGAAAATTCCCTTTCA+GGG | + | chr1_1:10577396-10577415 | None:intergenic | 30.0% | |
| ! | TGATGAATTTAGTTGGTTCT+TGG | - | chr1_1:10577440-10577459 | Msa0007370:CDS | 30.0% |
| ! | AATTTAGTTGGTTCTTGGTT+TGG | - | chr1_1:10577445-10577464 | Msa0007370:CDS | 30.0% |
| ! | TATAAATTTGGTGGAAGAAG+TGG | - | chr1_1:10577511-10577530 | Msa0007370:CDS | 30.0% |
| !!! | ACTTCTTGGTTTTGCAAAAT+TGG | - | chr1_1:10577546-10577565 | Msa0007370:CDS | 30.0% |
| !! | TGGTTTTGCAAAATTGGTAT+TGG | - | chr1_1:10577552-10577571 | Msa0007370:CDS | 30.0% |
| ! | GGTTTTGCAAAATTGGTATT+GGG | - | chr1_1:10577553-10577572 | Msa0007370:CDS | 30.0% |
| TAGCAAAGAAGATTCATTTG+TGG | - | chr1_1:10577690-10577709 | Msa0007370:intron | 30.0% | |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | chr1_1:10577788-10577807 | Msa0007370:CDS | 30.0% |
| ATAAACCACTTTCTACCATA+TGG | - | chr1_1:10577818-10577837 | Msa0007370:CDS | 30.0% | |
| !!! | TAATATGCTGATTTTCTGTG+AGG | - | chr1_1:10577932-10577951 | Msa0007370:CDS | 30.0% |
| GTAGTAGGAACTACTATTTA+TGG | - | chr1_1:10578052-10578071 | Msa0007370:five_prime_UTR | 30.0% | |
| GATAGCATACATAAGTTACA+TGG | + | chr1_1:10578086-10578105 | None:intergenic | 30.0% | |
| ! | TTCACATTCTTTTCTCCAAT+TGG | - | chr1_1:10576211-10576230 | Msa0007370:three_prime_UTR | 30.0% |
| ! | ATATAGGCTTTGTAACCAAT+TGG | + | chr1_1:10576229-10576248 | None:intergenic | 30.0% |
| CTAAACCATCATACTCAATA+TGG | - | chr1_1:10576280-10576299 | Msa0007370:three_prime_UTR | 30.0% | |
| !!! | ACTTTGTTTTCCGTTCAAAA+TGG | - | chr1_1:10576429-10576448 | Msa0007370:exon | 30.0% |
| !!! | CTTTGTTTTCCGTTCAAAAT+GGG | - | chr1_1:10576430-10576449 | Msa0007370:exon | 30.0% |
| ! | TAATTTCAGCCCATTTTGAA+CGG | + | chr1_1:10576442-10576461 | None:intergenic | 30.0% |
| !! | TCAAAATGGGCTGAAATTAA+TGG | - | chr1_1:10576443-10576462 | Msa0007370:exon | 30.0% |
| TATACCGTTGAAAATCAATG+TGG | + | chr1_1:10576543-10576562 | None:intergenic | 30.0% | |
| CTTCCAAAGTCTAAATCTTT+AGG | - | chr1_1:10576947-10576966 | Msa0007370:CDS | 30.0% | |
| ACAAAGACTATAAAAGCAGA+AGG | + | chr1_1:10577178-10577197 | None:intergenic | 30.0% | |
| ! | TGCTTTTATAGTCTTTGTGT+TGG | - | chr1_1:10577180-10577199 | Msa0007370:CDS | 30.0% |
| ! | GCTTTTATAGTCTTTGTGTT+GGG | - | chr1_1:10577181-10577200 | Msa0007370:CDS | 30.0% |
| TAACTGAAAATTCCCTTTCA+GGG | + | chr1_1:10577396-10577415 | None:intergenic | 30.0% | |
| ! | TGATGAATTTAGTTGGTTCT+TGG | - | chr1_1:10577440-10577459 | Msa0007370:CDS | 30.0% |
| ! | AATTTAGTTGGTTCTTGGTT+TGG | - | chr1_1:10577445-10577464 | Msa0007370:CDS | 30.0% |
| ! | TATAAATTTGGTGGAAGAAG+TGG | - | chr1_1:10577511-10577530 | Msa0007370:CDS | 30.0% |
| !!! | ACTTCTTGGTTTTGCAAAAT+TGG | - | chr1_1:10577546-10577565 | Msa0007370:CDS | 30.0% |
| !! | TGGTTTTGCAAAATTGGTAT+TGG | - | chr1_1:10577552-10577571 | Msa0007370:CDS | 30.0% |
| ! | GGTTTTGCAAAATTGGTATT+GGG | - | chr1_1:10577553-10577572 | Msa0007370:CDS | 30.0% |
| TAGCAAAGAAGATTCATTTG+TGG | - | chr1_1:10577690-10577709 | Msa0007370:intron | 30.0% | |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | chr1_1:10577788-10577807 | Msa0007370:CDS | 30.0% |
| ATAAACCACTTTCTACCATA+TGG | - | chr1_1:10577818-10577837 | Msa0007370:CDS | 30.0% | |
| !!! | TAATATGCTGATTTTCTGTG+AGG | - | chr1_1:10577932-10577951 | Msa0007370:CDS | 30.0% |
| GTAGTAGGAACTACTATTTA+TGG | - | chr1_1:10578052-10578071 | Msa0007370:five_prime_UTR | 30.0% | |
| GATAGCATACATAAGTTACA+TGG | + | chr1_1:10578086-10578105 | None:intergenic | 30.0% | |
| GTATGCCATATTGAGTATGA+TGG | + | chr1_1:10576288-10576307 | None:intergenic | 35.0% | |
| ! | TTTGAATTGAAGGAGGGTTT+TGG | + | chr1_1:10576310-10576329 | None:intergenic | 35.0% |
| CTGATGTTTGAATTGAAGGA+GGG | + | chr1_1:10576316-10576335 | None:intergenic | 35.0% | |
| TCTGATGTTTGAATTGAAGG+AGG | + | chr1_1:10576317-10576336 | None:intergenic | 35.0% | |
| GGATCTGATGTTTGAATTGA+AGG | + | chr1_1:10576320-10576339 | None:intergenic | 35.0% | |
| ! | ATCTTTGGGTTTGAAACTTG+TGG | + | chr1_1:10576387-10576406 | None:intergenic | 35.0% |
| !! | ATCATCACTGGTGTCATATA+TGG | - | chr1_1:10576677-10576696 | Msa0007370:CDS | 35.0% |
| GCCTTATCAGACAAAGATTT+CGG | - | chr1_1:10576743-10576762 | Msa0007370:CDS | 35.0% | |
| TGATTCCTTTATCTGTTGTG+AGG | - | chr1_1:10576855-10576874 | Msa0007370:CDS | 35.0% | |
| GATTCCTTTATCTGTTGTGA+GGG | - | chr1_1:10576856-10576875 | Msa0007370:CDS | 35.0% | |
| ATTCCTTTATCTGTTGTGAG+GGG | - | chr1_1:10576857-10576876 | Msa0007370:CDS | 35.0% | |
| TGGCCTAAAGATTTAGACTT+TGG | + | chr1_1:10576953-10576972 | None:intergenic | 35.0% | |
| AAACCATCTAAACCAAACCA+AGG | + | chr1_1:10576980-10576999 | None:intergenic | 35.0% | |
| !! | TTGGTTTGGTTTAGATGGTT+TGG | - | chr1_1:10576979-10576998 | Msa0007370:CDS | 35.0% |
| ATTGTGATTGTTAATGGAGC+TGG | - | chr1_1:10577028-10577047 | Msa0007370:CDS | 35.0% | |
| CAGAAAAATAGTGGTTGTTG+CGG | - | chr1_1:10577052-10577071 | Msa0007370:CDS | 35.0% | |
| ATTTGGATGGCCAAATTCAA+AGG | - | chr1_1:10577092-10577111 | Msa0007370:CDS | 35.0% | |
| CTTCATCACTCCTTTGAATT+TGG | + | chr1_1:10577105-10577124 | None:intergenic | 35.0% | |
| CAAATTCAAAGGAGTGATGA+AGG | - | chr1_1:10577103-10577122 | Msa0007370:CDS | 35.0% | |
| ! | CTTTGTGTTGGGAATAGTTT+TGG | - | chr1_1:10577192-10577211 | Msa0007370:CDS | 35.0% |
| AACATTGACAATGGAAGTTG+TGG | + | chr1_1:10577331-10577350 | None:intergenic | 35.0% | |
| ACAGAGTTCAACATTGACAA+TGG | + | chr1_1:10577340-10577359 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | chr1_1:10577381-10577400 | Msa0007370:CDS | 35.0% |
| GTAACTGAAAATTCCCTTTC+AGG | + | chr1_1:10577397-10577416 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | chr1_1:10577415-10577434 | Msa0007370:CDS | 35.0% | |
| CATCAATTTCAGTGACAGTT+GGG | - | chr1_1:10577416-10577435 | Msa0007370:CDS | 35.0% | |
| !! | GTTGGGTTGATGAATTTAGT+TGG | - | chr1_1:10577433-10577452 | Msa0007370:CDS | 35.0% |
| CTAGCAGGACAGTATAAATT+TGG | - | chr1_1:10577499-10577518 | Msa0007370:CDS | 35.0% | |
| ! | TGCAAAATTGGTATTGGGAT+TGG | - | chr1_1:10577558-10577577 | Msa0007370:CDS | 35.0% |
| !!! | TTGGTATTGGGATTGGTTTT+AGG | - | chr1_1:10577565-10577584 | Msa0007370:CDS | 35.0% |
| ! | ATTTTGCAGCAATTTCCAGT+TGG | - | chr1_1:10577604-10577623 | Msa0007370:CDS | 35.0% |
| ! | TTTTGCAGCAATTTCCAGTT+GGG | - | chr1_1:10577605-10577624 | Msa0007370:CDS | 35.0% |
| ! | CAATTTCCAGTTGGGATTTT+AGG | - | chr1_1:10577613-10577632 | Msa0007370:CDS | 35.0% |
| !! | TATTTGCACTGCTGTTTCAT+TGG | - | chr1_1:10577717-10577736 | Msa0007370:intron | 35.0% |
| ACCATATAGTTAGCAGTAGT+AGG | - | chr1_1:10578037-10578056 | Msa0007370:five_prime_UTR | 35.0% | |
| TCCTACTACTGCTAACTATA+TGG | + | chr1_1:10578041-10578060 | None:intergenic | 35.0% | |
| GTATGCCATATTGAGTATGA+TGG | + | chr1_1:10576288-10576307 | None:intergenic | 35.0% | |
| ! | TTTGAATTGAAGGAGGGTTT+TGG | + | chr1_1:10576310-10576329 | None:intergenic | 35.0% |
| CTGATGTTTGAATTGAAGGA+GGG | + | chr1_1:10576316-10576335 | None:intergenic | 35.0% | |
| TCTGATGTTTGAATTGAAGG+AGG | + | chr1_1:10576317-10576336 | None:intergenic | 35.0% | |
| GGATCTGATGTTTGAATTGA+AGG | + | chr1_1:10576320-10576339 | None:intergenic | 35.0% | |
| ! | ATCTTTGGGTTTGAAACTTG+TGG | + | chr1_1:10576387-10576406 | None:intergenic | 35.0% |
| !! | ATCATCACTGGTGTCATATA+TGG | - | chr1_1:10576677-10576696 | Msa0007370:CDS | 35.0% |
| GCCTTATCAGACAAAGATTT+CGG | - | chr1_1:10576743-10576762 | Msa0007370:CDS | 35.0% | |
| TGATTCCTTTATCTGTTGTG+AGG | - | chr1_1:10576855-10576874 | Msa0007370:CDS | 35.0% | |
| GATTCCTTTATCTGTTGTGA+GGG | - | chr1_1:10576856-10576875 | Msa0007370:CDS | 35.0% | |
| ATTCCTTTATCTGTTGTGAG+GGG | - | chr1_1:10576857-10576876 | Msa0007370:CDS | 35.0% | |
| TGGCCTAAAGATTTAGACTT+TGG | + | chr1_1:10576953-10576972 | None:intergenic | 35.0% | |
| AAACCATCTAAACCAAACCA+AGG | + | chr1_1:10576980-10576999 | None:intergenic | 35.0% | |
| !! | TTGGTTTGGTTTAGATGGTT+TGG | - | chr1_1:10576979-10576998 | Msa0007370:CDS | 35.0% |
| ATTGTGATTGTTAATGGAGC+TGG | - | chr1_1:10577028-10577047 | Msa0007370:CDS | 35.0% | |
| CAGAAAAATAGTGGTTGTTG+CGG | - | chr1_1:10577052-10577071 | Msa0007370:CDS | 35.0% | |
| ATTTGGATGGCCAAATTCAA+AGG | - | chr1_1:10577092-10577111 | Msa0007370:CDS | 35.0% | |
| CTTCATCACTCCTTTGAATT+TGG | + | chr1_1:10577105-10577124 | None:intergenic | 35.0% | |
| CAAATTCAAAGGAGTGATGA+AGG | - | chr1_1:10577103-10577122 | Msa0007370:CDS | 35.0% | |
| ! | CTTTGTGTTGGGAATAGTTT+TGG | - | chr1_1:10577192-10577211 | Msa0007370:CDS | 35.0% |
| AACATTGACAATGGAAGTTG+TGG | + | chr1_1:10577331-10577350 | None:intergenic | 35.0% | |
| ACAGAGTTCAACATTGACAA+TGG | + | chr1_1:10577340-10577359 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | chr1_1:10577381-10577400 | Msa0007370:CDS | 35.0% |
| GTAACTGAAAATTCCCTTTC+AGG | + | chr1_1:10577397-10577416 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | chr1_1:10577415-10577434 | Msa0007370:CDS | 35.0% | |
| CATCAATTTCAGTGACAGTT+GGG | - | chr1_1:10577416-10577435 | Msa0007370:CDS | 35.0% | |
| !! | GTTGGGTTGATGAATTTAGT+TGG | - | chr1_1:10577433-10577452 | Msa0007370:CDS | 35.0% |
| CTAGCAGGACAGTATAAATT+TGG | - | chr1_1:10577499-10577518 | Msa0007370:CDS | 35.0% | |
| ! | TGCAAAATTGGTATTGGGAT+TGG | - | chr1_1:10577558-10577577 | Msa0007370:CDS | 35.0% |
| !!! | TTGGTATTGGGATTGGTTTT+AGG | - | chr1_1:10577565-10577584 | Msa0007370:CDS | 35.0% |
| ! | ATTTTGCAGCAATTTCCAGT+TGG | - | chr1_1:10577604-10577623 | Msa0007370:CDS | 35.0% |
| ! | TTTTGCAGCAATTTCCAGTT+GGG | - | chr1_1:10577605-10577624 | Msa0007370:CDS | 35.0% |
| ! | CAATTTCCAGTTGGGATTTT+AGG | - | chr1_1:10577613-10577632 | Msa0007370:CDS | 35.0% |
| !! | TATTTGCACTGCTGTTTCAT+TGG | - | chr1_1:10577717-10577736 | Msa0007370:intron | 35.0% |
| ACCATATAGTTAGCAGTAGT+AGG | - | chr1_1:10578037-10578056 | Msa0007370:five_prime_UTR | 35.0% | |
| TCCTACTACTGCTAACTATA+TGG | + | chr1_1:10578041-10578060 | None:intergenic | 35.0% | |
| ! | GTTTGAAACTTGTGGCTGAA+TGG | + | chr1_1:10576379-10576398 | None:intergenic | 40.0% |
| !! | GCTGAAATTAATGGTGCCAT+GGG | - | chr1_1:10576452-10576471 | Msa0007370:CDS | 40.0% |
| ATATGTACCAAGATCACCCA+TGG | + | chr1_1:10576471-10576490 | None:intergenic | 40.0% | |
| ! | TGAAAATCAATGTGGTGCCA+AGG | + | chr1_1:10576535-10576554 | None:intergenic | 40.0% |
| !!! | GGCACCACATTGATTTTCAA+CGG | - | chr1_1:10576536-10576555 | Msa0007370:CDS | 40.0% |
| ATTCATGTCCGGAATCTTTC+AGG | - | chr1_1:10576644-10576663 | Msa0007370:CDS | 40.0% | |
| TGTAGACACCTGAAAGATTC+CGG | + | chr1_1:10576655-10576674 | None:intergenic | 40.0% | |
| GCCGAAATCTTTGTCTGATA+AGG | + | chr1_1:10576747-10576766 | None:intergenic | 40.0% | |
| ATTCCAGCTGTCATTATCTC+TGG | + | chr1_1:10576773-10576792 | None:intergenic | 40.0% | |
| ATTCCCCTCACAACAGATAA+AGG | + | chr1_1:10576863-10576882 | None:intergenic | 40.0% | |
| AATCTTTAGGCCAAAGACCT+TGG | - | chr1_1:10576960-10576979 | Msa0007370:CDS | 40.0% | |
| CTAAACCAAACCAAGGTCTT+TGG | + | chr1_1:10576973-10576992 | None:intergenic | 40.0% | |
| !! | AGACCTTGGTTTGGTTTAGA+TGG | - | chr1_1:10576974-10576993 | Msa0007370:CDS | 40.0% |
| !! | CGCAACAACCACTATTTTTC+TGG | + | chr1_1:10577054-10577073 | None:intergenic | 40.0% |
| CCATCCAAATTACCATCTTC+CGG | + | chr1_1:10577082-10577101 | None:intergenic | 40.0% | |
| ATTCAAAGGAGTGATGAAGG+TGG | - | chr1_1:10577106-10577125 | Msa0007370:CDS | 40.0% | |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | chr1_1:10577380-10577399 | Msa0007370:CDS | 40.0% |
| GCAGGACAGTATAAATTTGG+TGG | - | chr1_1:10577502-10577521 | Msa0007370:CDS | 40.0% | |
| ! | AAATTTGGTGGAAGAAGTGG+AGG | - | chr1_1:10577514-10577533 | Msa0007370:CDS | 40.0% |
| ! | AATTTGGTGGAAGAAGTGGA+GGG | - | chr1_1:10577515-10577534 | Msa0007370:CDS | 40.0% |
| AACACACCTAAAATCCCAAC+TGG | + | chr1_1:10577622-10577641 | None:intergenic | 40.0% | |
| !!! | GGTGTGTTACTTTTGTTTGC+TGG | - | chr1_1:10577634-10577653 | Msa0007370:intron | 40.0% |
| !! | AAGTGCTGCTCTTGGATTTT+TGG | - | chr1_1:10577747-10577766 | Msa0007370:intron | 40.0% |
| TGGTTCCATATGGTAGAAAG+TGG | + | chr1_1:10577826-10577845 | None:intergenic | 40.0% | |
| !!! | TGGACTTTTCTGGTTCCATA+TGG | + | chr1_1:10577836-10577855 | None:intergenic | 40.0% |
| ! | GTTTGAAACTTGTGGCTGAA+TGG | + | chr1_1:10576379-10576398 | None:intergenic | 40.0% |
| !! | GCTGAAATTAATGGTGCCAT+GGG | - | chr1_1:10576452-10576471 | Msa0007370:CDS | 40.0% |
| ATATGTACCAAGATCACCCA+TGG | + | chr1_1:10576471-10576490 | None:intergenic | 40.0% | |
| ! | TGAAAATCAATGTGGTGCCA+AGG | + | chr1_1:10576535-10576554 | None:intergenic | 40.0% |
| !!! | GGCACCACATTGATTTTCAA+CGG | - | chr1_1:10576536-10576555 | Msa0007370:CDS | 40.0% |
| ATTCATGTCCGGAATCTTTC+AGG | - | chr1_1:10576644-10576663 | Msa0007370:CDS | 40.0% | |
| TGTAGACACCTGAAAGATTC+CGG | + | chr1_1:10576655-10576674 | None:intergenic | 40.0% | |
| GCCGAAATCTTTGTCTGATA+AGG | + | chr1_1:10576747-10576766 | None:intergenic | 40.0% | |
| ATTCCAGCTGTCATTATCTC+TGG | + | chr1_1:10576773-10576792 | None:intergenic | 40.0% | |
| ATTCCCCTCACAACAGATAA+AGG | + | chr1_1:10576863-10576882 | None:intergenic | 40.0% | |
| AATCTTTAGGCCAAAGACCT+TGG | - | chr1_1:10576960-10576979 | Msa0007370:CDS | 40.0% | |
| CTAAACCAAACCAAGGTCTT+TGG | + | chr1_1:10576973-10576992 | None:intergenic | 40.0% | |
| !! | AGACCTTGGTTTGGTTTAGA+TGG | - | chr1_1:10576974-10576993 | Msa0007370:CDS | 40.0% |
| !! | CGCAACAACCACTATTTTTC+TGG | + | chr1_1:10577054-10577073 | None:intergenic | 40.0% |
| CCATCCAAATTACCATCTTC+CGG | + | chr1_1:10577082-10577101 | None:intergenic | 40.0% | |
| ATTCAAAGGAGTGATGAAGG+TGG | - | chr1_1:10577106-10577125 | Msa0007370:CDS | 40.0% | |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | chr1_1:10577380-10577399 | Msa0007370:CDS | 40.0% |
| GCAGGACAGTATAAATTTGG+TGG | - | chr1_1:10577502-10577521 | Msa0007370:CDS | 40.0% | |
| ! | AAATTTGGTGGAAGAAGTGG+AGG | - | chr1_1:10577514-10577533 | Msa0007370:CDS | 40.0% |
| ! | AATTTGGTGGAAGAAGTGGA+GGG | - | chr1_1:10577515-10577534 | Msa0007370:CDS | 40.0% |
| AACACACCTAAAATCCCAAC+TGG | + | chr1_1:10577622-10577641 | None:intergenic | 40.0% | |
| !!! | GGTGTGTTACTTTTGTTTGC+TGG | - | chr1_1:10577634-10577653 | Msa0007370:intron | 40.0% |
| !! | AAGTGCTGCTCTTGGATTTT+TGG | - | chr1_1:10577747-10577766 | Msa0007370:intron | 40.0% |
| TGGTTCCATATGGTAGAAAG+TGG | + | chr1_1:10577826-10577845 | None:intergenic | 40.0% | |
| !!! | TGGACTTTTCTGGTTCCATA+TGG | + | chr1_1:10577836-10577855 | None:intergenic | 40.0% |
| GGAGTGATTTCATGAGCTTC+TGG | + | chr1_1:10576341-10576360 | None:intergenic | 45.0% | |
| !! | GAATGGTTTGTTGGAGGTGT+TGG | + | chr1_1:10576362-10576381 | None:intergenic | 45.0% |
| ! | CTTGTGGCTGAATGGTTTGT+TGG | + | chr1_1:10576371-10576390 | None:intergenic | 45.0% |
| AGTGTCTGCACTGCATCTTT+GGG | + | chr1_1:10576401-10576420 | None:intergenic | 45.0% | |
| ! | GGCTGAAATTAATGGTGCCA+TGG | - | chr1_1:10576451-10576470 | Msa0007370:CDS | 45.0% |
| AGAGTGAGAGCCAAGACTAT+AGG | + | chr1_1:10576497-10576516 | None:intergenic | 45.0% | |
| GGTGTCTACAACATCATCAC+TGG | - | chr1_1:10576665-10576684 | Msa0007370:CDS | 45.0% | |
| ! | ATTGACTTCATGGGCTGAAC+AGG | + | chr1_1:10576713-10576732 | None:intergenic | 45.0% |
| ATCTTTGTCTGATAAGGCCG+CGG | + | chr1_1:10576741-10576760 | None:intergenic | 45.0% | |
| ATGACAGCTGGAATCTTGAC+CGG | - | chr1_1:10576779-10576798 | Msa0007370:CDS | 45.0% | |
| CTCTTTGTTCTCGGTATCAC+AGG | - | chr1_1:10576809-10576828 | Msa0007370:CDS | 45.0% | |
| TATCACAGGATTGATGCAGC+TGG | - | chr1_1:10576823-10576842 | Msa0007370:CDS | 45.0% | |
| AGGGGAATTCAACTAGCACA+AGG | - | chr1_1:10576875-10576894 | Msa0007370:CDS | 45.0% | |
| TTAGGCCAAAGACCTTGGTT+TGG | - | chr1_1:10576965-10576984 | Msa0007370:CDS | 45.0% | |
| TGCTCCGGAAGATGGTAATT+TGG | - | chr1_1:10577075-10577094 | Msa0007370:CDS | 45.0% | |
| CCGGAAGATGGTAATTTGGA+TGG | - | chr1_1:10577079-10577098 | Msa0007370:CDS | 45.0% | |
| !! | TGCACTGCTGTTTCATTGGT+TGG | - | chr1_1:10577721-10577740 | Msa0007370:intron | 45.0% |
| !!! | GCTGCTCTTGGATTTTTGGT+TGG | - | chr1_1:10577751-10577770 | Msa0007370:CDS | 45.0% |
| ! | TTGTCATGTGAGGACTTGCT+AGG | - | chr1_1:10577969-10577988 | Msa0007370:CDS | 45.0% |
| !! | TGTCATGTGAGGACTTGCTA+GGG | - | chr1_1:10577970-10577989 | Msa0007370:CDS | 45.0% |
| CTTGCTAGGGTTCTACTTCT+AGG | - | chr1_1:10577983-10578002 | Msa0007370:CDS | 45.0% | |
| GGAGTGATTTCATGAGCTTC+TGG | + | chr1_1:10576341-10576360 | None:intergenic | 45.0% | |
| !! | GAATGGTTTGTTGGAGGTGT+TGG | + | chr1_1:10576362-10576381 | None:intergenic | 45.0% |
| ! | CTTGTGGCTGAATGGTTTGT+TGG | + | chr1_1:10576371-10576390 | None:intergenic | 45.0% |
| AGTGTCTGCACTGCATCTTT+GGG | + | chr1_1:10576401-10576420 | None:intergenic | 45.0% | |
| ! | GGCTGAAATTAATGGTGCCA+TGG | - | chr1_1:10576451-10576470 | Msa0007370:CDS | 45.0% |
| AGAGTGAGAGCCAAGACTAT+AGG | + | chr1_1:10576497-10576516 | None:intergenic | 45.0% | |
| GGTGTCTACAACATCATCAC+TGG | - | chr1_1:10576665-10576684 | Msa0007370:CDS | 45.0% | |
| ! | ATTGACTTCATGGGCTGAAC+AGG | + | chr1_1:10576713-10576732 | None:intergenic | 45.0% |
| ATCTTTGTCTGATAAGGCCG+CGG | + | chr1_1:10576741-10576760 | None:intergenic | 45.0% | |
| ATGACAGCTGGAATCTTGAC+CGG | - | chr1_1:10576779-10576798 | Msa0007370:CDS | 45.0% | |
| CTCTTTGTTCTCGGTATCAC+AGG | - | chr1_1:10576809-10576828 | Msa0007370:CDS | 45.0% | |
| TATCACAGGATTGATGCAGC+TGG | - | chr1_1:10576823-10576842 | Msa0007370:CDS | 45.0% | |
| AGGGGAATTCAACTAGCACA+AGG | - | chr1_1:10576875-10576894 | Msa0007370:CDS | 45.0% | |
| TTAGGCCAAAGACCTTGGTT+TGG | - | chr1_1:10576965-10576984 | Msa0007370:CDS | 45.0% | |
| TGCTCCGGAAGATGGTAATT+TGG | - | chr1_1:10577075-10577094 | Msa0007370:CDS | 45.0% | |
| CCGGAAGATGGTAATTTGGA+TGG | - | chr1_1:10577079-10577098 | Msa0007370:CDS | 45.0% | |
| !! | TGCACTGCTGTTTCATTGGT+TGG | - | chr1_1:10577721-10577740 | Msa0007370:intron | 45.0% |
| !!! | GCTGCTCTTGGATTTTTGGT+TGG | - | chr1_1:10577751-10577770 | Msa0007370:CDS | 45.0% |
| ! | TTGTCATGTGAGGACTTGCT+AGG | - | chr1_1:10577969-10577988 | Msa0007370:CDS | 45.0% |
| !! | TGTCATGTGAGGACTTGCTA+GGG | - | chr1_1:10577970-10577989 | Msa0007370:CDS | 45.0% |
| CTTGCTAGGGTTCTACTTCT+AGG | - | chr1_1:10577983-10578002 | Msa0007370:CDS | 45.0% | |
| !! | GTGGCTGAATGGTTTGTTGG+AGG | + | chr1_1:10576368-10576387 | None:intergenic | 50.0% |
| CAGTGTCTGCACTGCATCTT+TGG | + | chr1_1:10576402-10576421 | None:intergenic | 50.0% | |
| !! | AATGGTGCCATGGGTGATCT+TGG | - | chr1_1:10576461-10576480 | Msa0007370:CDS | 50.0% |
| ! | CTTGGCTCTCACTCTAGCTA+AGG | - | chr1_1:10576502-10576521 | Msa0007370:CDS | 50.0% |
| CTAGCTAAGGACCTCAACCT+TGG | - | chr1_1:10576515-10576534 | Msa0007370:CDS | 50.0% | |
| ! | TCAATGTGGTGCCAAGGTTG+AGG | + | chr1_1:10576529-10576548 | None:intergenic | 50.0% |
| ! | TTCATGGGCTGAACAGGCAT+AGG | + | chr1_1:10576707-10576726 | None:intergenic | 50.0% |
| GTGCCAGAGATAATGACAGC+TGG | - | chr1_1:10576767-10576786 | Msa0007370:CDS | 50.0% | |
| GGAGCTGGCCAGAAAAATAG+TGG | - | chr1_1:10577043-10577062 | Msa0007370:CDS | 50.0% | |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | chr1_1:10577739-10577758 | Msa0007370:intron | 50.0% |
| !! | GTGGCTGAATGGTTTGTTGG+AGG | + | chr1_1:10576368-10576387 | None:intergenic | 50.0% |
| CAGTGTCTGCACTGCATCTT+TGG | + | chr1_1:10576402-10576421 | None:intergenic | 50.0% | |
| !! | AATGGTGCCATGGGTGATCT+TGG | - | chr1_1:10576461-10576480 | Msa0007370:CDS | 50.0% |
| ! | CTTGGCTCTCACTCTAGCTA+AGG | - | chr1_1:10576502-10576521 | Msa0007370:CDS | 50.0% |
| CTAGCTAAGGACCTCAACCT+TGG | - | chr1_1:10576515-10576534 | Msa0007370:CDS | 50.0% | |
| ! | TCAATGTGGTGCCAAGGTTG+AGG | + | chr1_1:10576529-10576548 | None:intergenic | 50.0% |
| ! | TTCATGGGCTGAACAGGCAT+AGG | + | chr1_1:10576707-10576726 | None:intergenic | 50.0% |
| GTGCCAGAGATAATGACAGC+TGG | - | chr1_1:10576767-10576786 | Msa0007370:CDS | 50.0% | |
| GGAGCTGGCCAGAAAAATAG+TGG | - | chr1_1:10577043-10577062 | Msa0007370:CDS | 50.0% | |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | chr1_1:10577739-10577758 | Msa0007370:intron | 50.0% |
| ! | GCGGCAGCGATTGACTTCAT+GGG | + | chr1_1:10576722-10576741 | None:intergenic | 55.0% |
| CATGAAGTCAATCGCTGCCG+CGG | - | chr1_1:10576721-10576740 | Msa0007370:CDS | 55.0% | |
| ACAGCTGGAATCTTGACCGG+TGG | - | chr1_1:10576782-10576801 | Msa0007370:CDS | 55.0% | |
| ! | GAGAACAAAGAGCACGCCAC+CGG | + | chr1_1:10576801-10576820 | None:intergenic | 55.0% |
| GGTGGCGTGCTCTTTGTTCT+CGG | - | chr1_1:10576800-10576819 | Msa0007370:CDS | 55.0% | |
| TAGTGGTTGTTGCGGTGCTC+CGG | - | chr1_1:10577060-10577079 | Msa0007370:CDS | 55.0% | |
| ! | GGTGCTGTGCCAACTTGTCA+TGG | - | chr1_1:10577466-10577485 | Msa0007370:CDS | 55.0% |
| GTGCCAACTTGTCATGGTGC+TGG | - | chr1_1:10577472-10577491 | Msa0007370:CDS | 55.0% | |
| CCACCAGCACCATGACAAGT+TGG | + | chr1_1:10577478-10577497 | None:intergenic | 55.0% | |
| ! | CCAACTTGTCATGGTGCTGG+TGG | - | chr1_1:10577475-10577494 | Msa0007370:CDS | 55.0% |
| ! | TGGAAGAAGTGGAGGGTGTG+TGG | - | chr1_1:10577522-10577541 | Msa0007370:CDS | 55.0% |
| ! | GCGGCAGCGATTGACTTCAT+GGG | + | chr1_1:10576722-10576741 | None:intergenic | 55.0% |
| CATGAAGTCAATCGCTGCCG+CGG | - | chr1_1:10576721-10576740 | Msa0007370:CDS | 55.0% | |
| ACAGCTGGAATCTTGACCGG+TGG | - | chr1_1:10576782-10576801 | Msa0007370:CDS | 55.0% | |
| ! | GAGAACAAAGAGCACGCCAC+CGG | + | chr1_1:10576801-10576820 | None:intergenic | 55.0% |
| GGTGGCGTGCTCTTTGTTCT+CGG | - | chr1_1:10576800-10576819 | Msa0007370:CDS | 55.0% | |
| TAGTGGTTGTTGCGGTGCTC+CGG | - | chr1_1:10577060-10577079 | Msa0007370:CDS | 55.0% | |
| ! | GGTGCTGTGCCAACTTGTCA+TGG | - | chr1_1:10577466-10577485 | Msa0007370:CDS | 55.0% |
| GTGCCAACTTGTCATGGTGC+TGG | - | chr1_1:10577472-10577491 | Msa0007370:CDS | 55.0% | |
| CCACCAGCACCATGACAAGT+TGG | + | chr1_1:10577478-10577497 | None:intergenic | 55.0% | |
| ! | CCAACTTGTCATGGTGCTGG+TGG | - | chr1_1:10577475-10577494 | Msa0007370:CDS | 55.0% |
| ! | TGGAAGAAGTGGAGGGTGTG+TGG | - | chr1_1:10577522-10577541 | Msa0007370:CDS | 55.0% |
| ! | CGCGGCAGCGATTGACTTCA+TGG | + | chr1_1:10576723-10576742 | None:intergenic | 60.0% |
| TGTTGCGGTGCTCCGGAAGA+TGG | - | chr1_1:10577067-10577086 | Msa0007370:CDS | 60.0% | |
| !! | CATGGTGCTGGTGGACTAGC+AGG | - | chr1_1:10577484-10577503 | Msa0007370:CDS | 60.0% |
| ! | GGAGGGTGTGTGGCACTTCT+TGG | - | chr1_1:10577532-10577551 | Msa0007370:CDS | 60.0% |
| ! | CGCGGCAGCGATTGACTTCA+TGG | + | chr1_1:10576723-10576742 | None:intergenic | 60.0% |
| TGTTGCGGTGCTCCGGAAGA+TGG | - | chr1_1:10577067-10577086 | Msa0007370:CDS | 60.0% | |
| !! | CATGGTGCTGGTGGACTAGC+AGG | - | chr1_1:10577484-10577503 | Msa0007370:CDS | 60.0% |
| ! | GGAGGGTGTGTGGCACTTCT+TGG | - | chr1_1:10577532-10577551 | Msa0007370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10576179 | 10578126 | 10576179 | ID=Msa0007370;Name=Msa0007370 |
| chr1_1 | mRNA | 10576179 | 10578126 | 10576179 | ID=Msa0007370-mRNA-1;Parent=Msa0007370;Name=Msa0007370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=120|1|1|1|1|1|2|265|484 |
| chr1_1 | exon | 10576179 | 10577639 | 10576179 | ID=Msa0007370-mRNA-1:exon:3861;Parent=Msa0007370-mRNA-1 |
| chr1_1 | exon | 10577748 | 10578126 | 10577748 | ID=Msa0007370-mRNA-1:exon:3860;Parent=Msa0007370-mRNA-1 |
| chr1_1 | five_prime_UTR | 10578007 | 10578126 | 10578007 | ID=Msa0007370-mRNA-1:five_prime_utr;Parent=Msa0007370-mRNA-1 |
| chr1_1 | CDS | 10577748 | 10578006 | 10577748 | ID=Msa0007370-mRNA-1:cds;Parent=Msa0007370-mRNA-1 |
| chr1_1 | CDS | 10576444 | 10577639 | 10576444 | ID=Msa0007370-mRNA-1:cds;Parent=Msa0007370-mRNA-1 |
| chr1_1 | three_prime_UTR | 10576179 | 10576443 | 10576179 | ID=Msa0007370-mRNA-1:three_prime_utr;Parent=Msa0007370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
