AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229320 MtrunA17_Chr8g0335451 94.130 494 15 1 1 480 586 1079 0.0 936
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229320 AT3G48110.1 67.409 494 145 3 1 480 576 1067 0.0 694

Find 106 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGAGGATTTACTTTAAT+TGG 0.137909 2_2:+1015870 None:intergenic
GAGTATGCTTCAACTACTTT+AGG 0.206944 2_2:+1014378 None:intergenic
CTTGAAGGTCTGAAACAATT+TGG 0.209015 2_2:-1013121 Msa0229320:three_prime_UTR
CACATACAGCAAAATATTTC+TGG 0.236160 2_2:+1017717 None:intergenic
TCGAAGATTAGAGCAATTTC+TGG 0.241972 2_2:-1015718 Msa0229320:intron
TGCTGCTAGACCGGGAAAAT+TGG 0.253876 2_2:+1014921 None:intergenic
GTAAGGTCTGCAATTCCTTT+AGG 0.256886 2_2:+1013336 None:intergenic
CCAGAGCCTCTTTAAAATCT+AGG 0.272346 2_2:+1015913 None:intergenic
CCGATAAAAGGCCGCGTTTA+GGG 0.282947 2_2:+1013244 None:intergenic
ACTGAGTTTACTGCACTTTC+AGG 0.293442 2_2:-1016533 Msa0229320:CDS
GGATGCATGCTTCCGATAAA+AGG 0.300382 2_2:+1013232 None:intergenic
CATATAGATTATTTATTGAT+TGG 0.306969 2_2:-1013283 Msa0229320:three_prime_UTR
ATGAGTTGGACACTCGTAAA+AGG 0.309254 2_2:-1017086 Msa0229320:CDS
TTGACATATCTGAGCATATA+GGG 0.309545 2_2:-1013198 Msa0229320:three_prime_UTR
TAAGGTCTGCAATTCCTTTA+GGG 0.311601 2_2:+1013337 None:intergenic
ACATTAGCAGAAAGTGTAAA+TGG 0.334856 2_2:-1018431 Msa0229320:CDS
ACTGCACTTTCAGGAGTAAT+GGG 0.361337 2_2:-1016524 Msa0229320:CDS
TCCGATAAAAGGCCGCGTTT+AGG 0.365871 2_2:+1013243 None:intergenic
AGTATGCTTCAACTACTTTA+GGG 0.376953 2_2:+1014379 None:intergenic
ACCTCGTCAAGCAAACCTTT+TGG 0.386455 2_2:+1018395 None:intergenic
TAGCTTGGTAGGTTTGTTCT+CGG 0.388826 2_2:-1016140 Msa0229320:CDS
AACTTTCCAAGCACTGGAAT+AGG 0.389431 2_2:+1018274 None:intergenic
AAGTGACGCTGGCATAGTTT+TGG 0.397286 2_2:-1016272 Msa0229320:CDS
ACCATAGTCAAAAGATCCTT+TGG 0.399848 2_2:+1018229 None:intergenic
AAGATACACAACAAATTATC+CGG 0.400344 2_2:-1016601 Msa0229320:CDS
TTTGCTGTATGTGATGCTAA+TGG 0.410655 2_2:-1017707 Msa0229320:CDS
TGGCAAGTGAGGCAGCTTCC+CGG 0.413437 2_2:+1016582 None:intergenic
CTTTAATAACGTCTTTGTAA+TGG 0.414303 2_2:-1013540 Msa0229320:CDS
AAAATCCTGGTAACAATGTA+AGG 0.417891 2_2:+1013319 None:intergenic
CAAATTGTTTCAGACCTTCA+AGG 0.448558 2_2:+1013122 None:intergenic
GTGTATCTTCATTAATATCC+AGG 0.448812 2_2:+1016615 None:intergenic
CAGACCAAATGGATCATTTG+TGG 0.448952 2_2:+1016099 None:intergenic
TACTGCACTTTCAGGAGTAA+TGG 0.450834 2_2:-1016525 Msa0229320:CDS
TTGGTAGGTTTGTTCTCGGC+TGG 0.452338 2_2:-1016136 Msa0229320:CDS
GAACTTACAGCAATAAAGTA+AGG 0.452913 2_2:+1017674 None:intergenic
TCTTTAAACTTTCCAAGCAC+TGG 0.456289 2_2:+1018268 None:intergenic
AGTTCCACAAATGATCCATT+TGG 0.457546 2_2:-1016103 Msa0229320:CDS
TTGCTGTATGTGATGCTAAT+GGG 0.463434 2_2:-1017706 Msa0229320:CDS
GGGAGTCAATGTTGAATTTG+AGG 0.465213 2_2:-1018565 Msa0229320:intron
TTGCATTCAACTAGGCTAAG+AGG 0.466459 2_2:+1013085 None:intergenic
GAGATTCTTCGCAGACCAAA+TGG 0.466768 2_2:+1016088 None:intergenic
TATTCCTCAGGTGCAATTGT+TGG 0.469164 2_2:-1015952 Msa0229320:intron
GGCCAAATTCTGATTCCAAA+AGG 0.473598 2_2:-1018410 Msa0229320:CDS
ATCCTTTGGAAGATCTAAGA+AGG 0.478510 2_2:+1018243 None:intergenic
CTTGCCAACCCTTAAAATCC+TGG 0.489615 2_2:+1013306 None:intergenic
TCCTCAGGTGCAATTGTTGG+TGG 0.491247 2_2:-1015949 Msa0229320:intron
TGCATTCAACTAGGCTAAGA+GGG 0.492328 2_2:+1013086 None:intergenic
GAGGATTTACTTTAATTGGC+TGG 0.492354 2_2:+1015874 None:intergenic
TTTGACATATCTGAGCATAT+AGG 0.492399 2_2:-1013199 Msa0229320:three_prime_UTR
TAGATGGAAGAATTATCAAA+AGG 0.493381 2_2:-1014411 Msa0229320:CDS
GAAGGAAGACGAGCTTGATT+CGG 0.500268 2_2:-1014331 Msa0229320:CDS
ATTGGCCCTCTCTGCAAGGA+TGG 0.503101 2_2:+1014939 None:intergenic
TCTCTCTTCATTTGTCTCAA+AGG 0.503466 2_2:+1013843 None:intergenic
GATAAAAGGCCGCGTTTAGG+GGG 0.514987 2_2:+1013246 None:intergenic
TAATAACGTCTTTGTAATGG+TGG 0.516083 2_2:-1013537 Msa0229320:intron
GGTCTGCGAAGAATCTCATA+TGG 0.517189 2_2:-1016082 Msa0229320:CDS
GAGGCACCTATTCCAGTGCT+TGG 0.520464 2_2:-1018280 Msa0229320:CDS
GAAATTGCTGATCTCCCTAA+AGG 0.521851 2_2:-1013351 Msa0229320:CDS
TTCCCACGGACAATTCTAGT+TGG 0.531705 2_2:+1014351 None:intergenic
TGTCTGCAGATTAGATAGCT+TGG 0.537996 2_2:-1016155 Msa0229320:intron
TAGAGATGGATACTCACAAC+AGG 0.538149 2_2:-1016486 Msa0229320:intron
AGTATGTCCCCAGAAAATCT+AGG 0.539449 2_2:+1016301 None:intergenic
CGTCACTATGCGCTTAGAGA+TGG 0.545113 2_2:-1016500 Msa0229320:CDS
CTTACTTCGTCTATTACTTG+AGG 0.545687 2_2:+1015855 None:intergenic
GGAATGAAATAGGAGAAACT+TGG 0.546203 2_2:-1016695 Msa0229320:intron
CGATAAAAGGCCGCGTTTAG+GGG 0.546966 2_2:+1013245 None:intergenic
AATGGATCATTTGTGGAACT+AGG 0.548190 2_2:+1016106 None:intergenic
TACTAAGCTAAGTTGCATCC+TGG 0.549029 2_2:-1016633 Msa0229320:CDS
GGAGAAACTTGGGACCATGC+TGG 0.556398 2_2:-1016684 Msa0229320:CDS
TGCAGATTAGATAGCTTGGT+AGG 0.565121 2_2:-1016151 Msa0229320:intron
ATAAAAGGCCGCGTTTAGGG+GGG 0.565414 2_2:+1013247 None:intergenic
TCGTTCCATCCTTGCAGAGA+GGG 0.566262 2_2:-1014944 Msa0229320:CDS
GAATGAAATAGGAGAAACTT+GGG 0.568439 2_2:-1016694 Msa0229320:intron
AACCTTCTTAGATCTTCCAA+AGG 0.571885 2_2:-1018245 Msa0229320:CDS
AACTAGAATTGTCCGTGGGA+AGG 0.574327 2_2:-1014349 Msa0229320:CDS
TAAAAGGCCGCGTTTAGGGG+GGG 0.574624 2_2:+1013248 None:intergenic
GAAAATTGGCCCTCTCTGCA+AGG 0.576042 2_2:+1014935 None:intergenic
GATATGTCAAAATACACTGC+CGG 0.579363 2_2:+1013211 None:intergenic
AATGACTCGTGTTGAAAACA+TGG 0.579369 2_2:-1016657 Msa0229320:CDS
TCCAAAAGGTTTGCTTGACG+AGG 0.580053 2_2:-1018396 Msa0229320:intron
GCAGACCTTACATTGTTACC+AGG 0.580871 2_2:-1013324 Msa0229320:CDS
TTAGGTTGTAAATCTTGTTG+AGG 0.582019 2_2:-1018299 Msa0229320:intron
ATTACAGTATCAGGTGGATG+AGG 0.582645 2_2:-1013869 Msa0229320:intron
AAAAGAATTATATAGTACAT+TGG 0.582704 2_2:+1013055 None:intergenic
GGAAGACGAGCTTGATTCGG+AGG 0.586620 2_2:-1014328 Msa0229320:intron
AAGGTCAGACATGGCAAGTG+AGG 0.587060 2_2:+1016571 None:intergenic
TTTCCTATTACAGTATCAGG+TGG 0.598251 2_2:-1013875 Msa0229320:intron
TGACATATCTGAGCATATAG+GGG 0.600616 2_2:-1013197 Msa0229320:three_prime_UTR
AGGAAGTGTGATCTCATACA+AGG 0.604830 2_2:+1016321 None:intergenic
AAGTAGTTGAAGCATACTCT+CGG 0.606137 2_2:-1014374 Msa0229320:CDS
TCAAATCTTGCAGACTGCAG+AGG 0.606332 2_2:-1016344 Msa0229320:intron
CTGCACTTTCAGGAGTAATG+GGG 0.615003 2_2:-1016523 Msa0229320:CDS
AGATACACAACAAATTATCC+GGG 0.615248 2_2:-1016600 Msa0229320:CDS
TTCGTTCCATCCTTGCAGAG+AGG 0.617522 2_2:-1014945 Msa0229320:CDS
AAACTCAGTGACAACTGATG+TGG 0.618357 2_2:+1016547 None:intergenic
TTTGTTAACAGGTGGACAAG+GGG 0.625633 2_2:-1014984 Msa0229320:intron
CAAGCTCGTCTTCCTTCCCA+CGG 0.628222 2_2:+1014337 None:intergenic
GACATATCTGAGCATATAGG+GGG 0.630423 2_2:-1013196 Msa0229320:three_prime_UTR
CAGTGACAACTGATGTGGAA+AGG 0.632266 2_2:+1016552 None:intergenic
TGATGTGGAAAGGTCAGACA+TGG 0.654384 2_2:+1016562 None:intergenic
ATACTTCCTAAAAGTGACGC+TGG 0.659413 2_2:-1016283 Msa0229320:CDS
CGGCCAACTAGAATTGTCCG+TGG 0.660199 2_2:-1014354 Msa0229320:CDS
GCATTCAACTAGGCTAAGAG+GGG 0.661161 2_2:+1013087 None:intergenic
TTGTTAACAGGTGGACAAGG+GGG 0.677040 2_2:-1014983 Msa0229320:intron
GGCCAACTAGAATTGTCCGT+GGG 0.677976 2_2:-1014353 Msa0229320:CDS
TTATTAAAGAAATCTTCGAG+TGG 0.681912 2_2:+1013554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTAGTTTTATCTTATAT+TGG + chr2_2:1013738-1013757 None:intergenic 15.0%
!!! TAGTTATCAATATATTTTAG+TGG + chr2_2:1014300-1014319 None:intergenic 15.0%
!!! ACTAAAATATATTGATAACT+AGG - chr2_2:1014299-1014318 Msa0229320:intron 15.0%
!! AAAGAAAATAAAACTAGAAA+AGG + chr2_2:1014664-1014683 None:intergenic 15.0%
!!! GTTTTATTTTCTTTTAAATG+AGG - chr2_2:1014670-1014689 Msa0229320:intron 15.0%
!!! TCAATATTGGTTATTTATTT+TGG - chr2_2:1014888-1014907 Msa0229320:intron 15.0%
!!! TTATCATTTTATTGATTGTT+TGG + chr2_2:1016224-1016243 None:intergenic 15.0%
!! TTATAATATCATATGTCATT+TGG - chr2_2:1016257-1016276 Msa0229320:intron 15.0%
!! GAATACATTAAAAAATTCAA+AGG + chr2_2:1016791-1016810 None:intergenic 15.0%
!! AATATTGAAATAAAATACCA+AGG + chr2_2:1017902-1017921 None:intergenic 15.0%
!! CATATAGATTATTTATTGAT+TGG - chr2_2:1018329-1018348 Msa0229320:intron 15.0%
!! AAAAGAATTATATAGTACAT+TGG + chr2_2:1018560-1018579 None:intergenic 15.0%
!! TTCACTTACAATGAAAAATA+CGG - chr2_2:1013026-1013045 Msa0229320:three_prime_UTR 20.0%
!!! ATCTCTGTTTTTTTTTTTTG+AGG - chr2_2:1013642-1013661 Msa0229320:intron 20.0%
!! TATATATACTTTACAAGACT+TGG - chr2_2:1014124-1014143 Msa0229320:intron 20.0%
!!! TAATTAAGTTTTGGTTAATG+TGG + chr2_2:1014468-1014487 None:intergenic 20.0%
!! AAAACTTAATTATCTTTGCA+GGG - chr2_2:1014476-1014495 Msa0229320:intron 20.0%
!! TTGATGCTGAAAATAAAATA+AGG - chr2_2:1014711-1014730 Msa0229320:intron 20.0%
!! TGATGCTGAAAATAAAATAA+GGG - chr2_2:1014712-1014731 Msa0229320:intron 20.0%
!!! ACAGGTTGTTAAATTTTTAT+TGG - chr2_2:1015144-1015163 Msa0229320:intron 20.0%
!! AGGAAAAGATTCAAATTAAA+AGG + chr2_2:1015391-1015410 None:intergenic 20.0%
!!! TAAAAACCTAGATTTTAAAG+AGG - chr2_2:1015693-1015712 Msa0229320:intron 20.0%
!! TGAAATATATACAAGATGAA+TGG + chr2_2:1015784-1015803 None:intergenic 20.0%
!! GTATAGCAAAATTAAGTTAA+AGG - chr2_2:1016024-1016043 Msa0229320:intron 20.0%
!! TGATTAAGTTAAAAAGATGT+TGG + chr2_2:1016144-1016163 None:intergenic 20.0%
!! TAATCATCAATTTGATGTAT+TGG - chr2_2:1016158-1016177 Msa0229320:intron 20.0%
!! AATCATCAATTTGATGTATT+GGG - chr2_2:1016159-1016178 Msa0229320:intron 20.0%
!! TAAAGTGTAATATCTTGTTA+AGG + chr2_2:1016345-1016364 None:intergenic 20.0%
!!! TATTTTAACAAGCATCATAT+TGG - chr2_2:1016377-1016396 Msa0229320:intron 20.0%
!! TAATATGAAAGGAAATTATG+AGG + chr2_2:1016755-1016774 None:intergenic 20.0%
!! ATTAACATCAACAAATCAAA+GGG + chr2_2:1016905-1016924 None:intergenic 20.0%
!! TATTAACATCAACAAATCAA+AGG + chr2_2:1016906-1016925 None:intergenic 20.0%
!!! ATAGAATCATCTTTAACTTT+TGG - chr2_2:1017129-1017148 Msa0229320:intron 20.0%
!!! TTTTCAATGATTGATTTAGA+TGG - chr2_2:1017185-1017204 Msa0229320:intron 20.0%
!!! AGTATAACTCATATTTTTAG+GGG + chr2_2:1017378-1017397 None:intergenic 20.0%
!!! GAGTATAACTCATATTTTTA+GGG + chr2_2:1017379-1017398 None:intergenic 20.0%
!!! TGAGTATAACTCATATTTTT+AGG + chr2_2:1017380-1017399 None:intergenic 20.0%
!! CTTTATTCTATGTTATTCTT+TGG + chr2_2:1017405-1017424 None:intergenic 20.0%
!! ATAATTCTTCATTTCTCATT+TGG - chr2_2:1017540-1017559 Msa0229320:intron 20.0%
!! GAAGAAAACTTAGATATTAT+TGG + chr2_2:1017980-1017999 None:intergenic 20.0%
!!! TTTTGTTTTTTGTGCAATTT+AGG - chr2_2:1018197-1018216 Msa0229320:intron 20.0%
!! TGAAAAAAGATCTATCTTAT+GGG + chr2_2:1018468-1018487 None:intergenic 20.0%
!! ATGAAAAAAGATCTATCTTA+TGG + chr2_2:1018469-1018488 None:intergenic 20.0%
! TCACTTACAATGAAAAATAC+GGG - chr2_2:1013027-1013046 Msa0229320:three_prime_UTR 25.0%
!!! GCTCTACAATTTTTTTCTTA+CGG + chr2_2:1013153-1013172 None:intergenic 25.0%
! ATGCAATAATATTGAGCAAA+GGG + chr2_2:1013257-1013276 None:intergenic 25.0%
! TATGCAATAATATTGAGCAA+AGG + chr2_2:1013258-1013277 None:intergenic 25.0%
! AACCTAAAATCAAATGCAAA+CGG + chr2_2:1013300-1013319 None:intergenic 25.0%
! GTCAAATAATCAACATGTAA+AGG + chr2_2:1013431-1013450 None:intergenic 25.0%
! AAGATAAAACTAAACTAGTG+AGG - chr2_2:1013742-1013761 Msa0229320:intron 25.0%
!!! TCATTCAACTTAATTTGTTG+TGG - chr2_2:1013773-1013792 Msa0229320:intron 25.0%
! CAATATTCTTCAAAATTTGC+AGG + chr2_2:1013830-1013849 None:intergenic 25.0%
! AAAAACATGTGGTTATTCTA+GGG + chr2_2:1013981-1014000 None:intergenic 25.0%
! AAAAAACATGTGGTTATTCT+AGG + chr2_2:1013982-1014001 None:intergenic 25.0%
! ATAACAAGTCAAAAAACATG+TGG + chr2_2:1013992-1014011 None:intergenic 25.0%
!!! TTGTTATTTGTTGAATGACA+TGG - chr2_2:1014005-1014024 Msa0229320:intron 25.0%
!! CTGCAAAGATAATTAAGTTT+TGG + chr2_2:1014477-1014496 None:intergenic 25.0%
! CAAAACTTAATTATCTTTGC+AGG - chr2_2:1014475-1014494 Msa0229320:intron 25.0%
!!! ATTTTATTTTCAGCATCAAC+AGG + chr2_2:1014710-1014729 None:intergenic 25.0%
! GATGCTGAAAATAAAATAAG+GGG - chr2_2:1014713-1014732 Msa0229320:intron 25.0%
! TGAAAATAAAATAAGGGGAA+AGG - chr2_2:1014718-1014737 Msa0229320:intron 25.0%
!!! ACCTTTAAAATACTATCACA+AGG - chr2_2:1014779-1014798 Msa0229320:intron 25.0%
!!! ACCTTGTGATAGTATTTTAA+AGG + chr2_2:1014783-1014802 None:intergenic 25.0%
! AAGGTAATTGTGGAAAATAA+GGG - chr2_2:1014798-1014817 Msa0229320:intron 25.0%
! TAGTGCTTATCATTCAATAT+TGG - chr2_2:1014875-1014894 Msa0229320:intron 25.0%
!!! GGTTATTTATTTTGGTAACA+TGG - chr2_2:1014896-1014915 Msa0229320:intron 25.0%
! AAGATACACAACAAATTATC+CGG - chr2_2:1015011-1015030 Msa0229320:intron 25.0%
! TTTGTGCTTAATGTTTCTTA+TGG + chr2_2:1015622-1015641 None:intergenic 25.0%
! ACTTGAGGATTTACTTTAAT+TGG + chr2_2:1015745-1015764 None:intergenic 25.0%
! AGATTCACTCAATTAAAAGA+TGG + chr2_2:1015986-1016005 None:intergenic 25.0%
! GCAAAATTAAGTTAAAGGAA+TGG - chr2_2:1016029-1016048 Msa0229320:intron 25.0%
! ATAACCTTATAGATAAACCT+TGG - chr2_2:1016099-1016118 Msa0229320:CDS 25.0%
! ATCATCAATTTGATGTATTG+GGG - chr2_2:1016160-1016179 Msa0229320:intron 25.0%
! ATTTCATCAAGAAGATTACA+AGG + chr2_2:1016563-1016582 None:intergenic 25.0%
! CCTTTCATATTAGTATAAAG+CGG - chr2_2:1016763-1016782 Msa0229320:intron 25.0%
! TTAACATCAACAAATCAAAG+GGG + chr2_2:1016904-1016923 None:intergenic 25.0%
! GTTGATGTTAATAAGAAGAT+AGG - chr2_2:1016913-1016932 Msa0229320:intron 25.0%
! AAAAAGAATACTCAGTGAAA+AGG + chr2_2:1017063-1017082 None:intergenic 25.0%
! ATCAATCATTGAAAATCAAC+AGG + chr2_2:1017180-1017199 None:intergenic 25.0%
! TAGATGGAAGAATTATCAAA+AGG - chr2_2:1017201-1017220 Msa0229320:intron 25.0%
!! GAATAAAGCCAAAAATGTTT+TGG - chr2_2:1017417-1017436 Msa0229320:intron 25.0%
! CTATGATGTATGTTATTCTT+TGG + chr2_2:1017474-1017493 None:intergenic 25.0%
!!! TTTTTTCCTATTACAGTATC+AGG - chr2_2:1017734-1017753 Msa0229320:CDS 25.0%
! AATAAAATACCAAGGAAAGT+TGG + chr2_2:1017894-1017913 None:intergenic 25.0%
! TTATTAAAGAAATCTTCGAG+TGG + chr2_2:1018061-1018080 None:intergenic 25.0%
! CTTTAATAACGTCTTTGTAA+TGG - chr2_2:1018072-1018091 Msa0229320:intron 25.0%
! ACATTAGCAGAAAGTGTAAA+TGG - chr2_2:1013181-1013200 Msa0229320:three_prime_UTR 30.0%
!!! AACCTTTTGGAATCAGAATT+TGG + chr2_2:1013207-1013226 None:intergenic 30.0%
! TTAGGTTGTAAATCTTGTTG+AGG - chr2_2:1013313-1013332 Msa0229320:exon 30.0%
TCTATGTATGGAATTTAGCT+TGG + chr2_2:1013606-1013625 None:intergenic 30.0%
AACTTAGTTGAGTCTATGTA+TGG + chr2_2:1013618-1013637 None:intergenic 30.0%
! ATTGCGATATTTTCAATCAG+GGG + chr2_2:1013710-1013729 None:intergenic 30.0%
! GATTGCGATATTTTCAATCA+GGG + chr2_2:1013711-1013730 None:intergenic 30.0%
! TGATTGCGATATTTTCAATC+AGG + chr2_2:1013712-1013731 None:intergenic 30.0%
! AACTAAACTAGTGAGGTTTT+TGG - chr2_2:1013749-1013768 Msa0229320:intron 30.0%
CACATACAGCAAAATATTTC+TGG + chr2_2:1013898-1013917 None:intergenic 30.0%
GAACTTACAGCAATAAAGTA+AGG + chr2_2:1013941-1013960 None:intergenic 30.0%
AAAACATGTGGTTATTCTAG+GGG + chr2_2:1013980-1013999 None:intergenic 30.0%
! ATGACATGGTATTTTCTTCT+AGG - chr2_2:1014019-1014038 Msa0229320:intron 30.0%
! ATTTTCTTCTAGGTTGCAAA+CGG - chr2_2:1014029-1014048 Msa0229320:intron 30.0%
GTTGATCCTTAACATGATAT+CGG + chr2_2:1014192-1014211 None:intergenic 30.0%
GTTACTTGATCTCACTATAA+AGG + chr2_2:1014278-1014297 None:intergenic 30.0%
GAAACAAAATTGGATTCAAC+AGG + chr2_2:1014437-1014456 None:intergenic 30.0%
!! TTGAATCCAATTTTGTTTCG+TGG - chr2_2:1014438-1014457 Msa0229320:intron 30.0%
!! TGAATCCAATTTTGTTTCGT+GGG - chr2_2:1014439-1014458 Msa0229320:intron 30.0%
! TGCTAAGTTCTTTTATGAGT+TGG - chr2_2:1014512-1014531 Msa0229320:intron 30.0%
!! GAATATTTTTCAGTTGCTCT+CGG + chr2_2:1014563-1014582 None:intergenic 30.0%
GGATTAAAAAACACTAGTGA+AGG + chr2_2:1014643-1014662 None:intergenic 30.0%
ATACTATCACAAGGTAATTG+TGG - chr2_2:1014788-1014807 Msa0229320:intron 30.0%
CAAGGTAATTGTGGAAAATA+AGG - chr2_2:1014797-1014816 Msa0229320:intron 30.0%
ATTGTGGAAAATAAGGGTAA+AGG - chr2_2:1014804-1014823 Msa0229320:intron 30.0%
! TTGGTAACATGGAATGAAAT+AGG - chr2_2:1014907-1014926 Msa0229320:CDS 30.0%
GAATGAAATAGGAGAAACTT+GGG - chr2_2:1014918-1014937 Msa0229320:CDS 30.0%
GTGTATCTTCATTAATATCC+AGG + chr2_2:1015000-1015019 None:intergenic 30.0%
AGATACACAACAAATTATCC+GGG - chr2_2:1015012-1015031 Msa0229320:intron 30.0%
GAAAAAAGAACAGAATGTGA+AGG + chr2_2:1015583-1015602 None:intergenic 30.0%
! TCATCATTCACATCTCTTTT+AGG - chr2_2:1015825-1015844 Msa0229320:intron 30.0%
! AATTTTCAACTCTAATCTCC+AGG + chr2_2:1016060-1016079 None:intergenic 30.0%
TTAAAAAGATGTTGGAGACT+GGG + chr2_2:1016136-1016155 None:intergenic 30.0%
TAAGAATGGTTTAGGCTTTA+GGG + chr2_2:1016295-1016314 None:intergenic 30.0%
!! CATCATATTGGTAATGCTTA+TGG - chr2_2:1016389-1016408 Msa0229320:intron 30.0%
ATAGACTATTGTATGATCTG+TGG - chr2_2:1016414-1016433 Msa0229320:intron 30.0%
! TATATACTTTGAGAAATGCC+AGG - chr2_2:1016582-1016601 Msa0229320:CDS 30.0%
CCGCTTTATACTAATATGAA+AGG + chr2_2:1016766-1016785 None:intergenic 30.0%
!!! TATGTATCCTGCGTTTTTTT+GGG + chr2_2:1016985-1017004 None:intergenic 30.0%
! TTCACTGAGTATTCTTTTTC+CGG - chr2_2:1017064-1017083 Msa0229320:CDS 30.0%
AGAAAGACTCATAAGTTTAG+AGG + chr2_2:1017099-1017118 None:intergenic 30.0%
AGTATGCTTCAACTACTTTA+GGG + chr2_2:1017236-1017255 None:intergenic 30.0%
AAAGCAACAATTCATAATGC+AGG + chr2_2:1017443-1017462 None:intergenic 30.0%
! CATCATAGCAATAATTTGTG+AGG - chr2_2:1017486-1017505 Msa0229320:intron 30.0%
! GTAAGCTACAAATTAGTTTG+TGG - chr2_2:1017659-1017678 Msa0229320:intron 30.0%
!! GTTAAAAAGAGTATCAATCC+TGG - chr2_2:1017816-1017835 Msa0229320:intron 30.0%
TAATAACGTCTTTGTAATGG+TGG - chr2_2:1018075-1018094 Msa0229320:intron 30.0%
ATGCTAAGATCAGAAAAAAC+AGG - chr2_2:1018223-1018242 Msa0229320:intron 30.0%
AAAATCCTGGTAACAATGTA+AGG + chr2_2:1018296-1018315 None:intergenic 30.0%
! ACATTGTTACCAGGATTTTA+AGG - chr2_2:1018297-1018316 Msa0229320:CDS 30.0%
! CATTGTTACCAGGATTTTAA+GGG - chr2_2:1018298-1018317 Msa0229320:CDS 30.0%
TTTGACATATCTGAGCATAT+AGG - chr2_2:1018413-1018432 Msa0229320:CDS 30.0%
TTGACATATCTGAGCATATA+GGG - chr2_2:1018414-1018433 Msa0229320:CDS 30.0%
!!! GATCTTTTTTCATACCTTGA+AGG - chr2_2:1018476-1018495 Msa0229320:intron 30.0%
GCAAAAATTTGCATTCAACT+AGG + chr2_2:1018538-1018557 None:intergenic 30.0%
ACTAGATTGTTACATTTGCC+AGG - chr2_2:1013126-1013145 Msa0229320:three_prime_UTR 35.0%
!!! CAATTTTTTTCTTACGGTCC+TGG + chr2_2:1013147-1013166 None:intergenic 35.0%
!! TGCCGTTTGCATTTGATTTT+AGG - chr2_2:1013295-1013314 Msa0229320:three_prime_UTR 35.0%
TCTTTAAACTTTCCAAGCAC+TGG + chr2_2:1013347-1013366 None:intergenic 35.0%
AACCTTCTTAGATCTTCCAA+AGG - chr2_2:1013367-1013386 Msa0229320:CDS 35.0%
! ATCCTTTGGAAGATCTAAGA+AGG + chr2_2:1013372-1013391 None:intergenic 35.0%
!! TCCAAAGGATCTTTTGACTA+TGG - chr2_2:1013382-1013401 Msa0229320:CDS 35.0%
ACCATAGTCAAAAGATCCTT+TGG + chr2_2:1013386-1013405 None:intergenic 35.0%
! TTGACTAGTTCAGATGATAC+AGG - chr2_2:1013446-1013465 Msa0229320:intron 35.0%
ACACTACTTGATTCTCATGT+CGG + chr2_2:1013511-1013530 None:intergenic 35.0%
! GTGGGTTACTAATGTTGTTT+AGG + chr2_2:1013574-1013593 None:intergenic 35.0%
! TTTGCTGTATGTGATGCTAA+TGG - chr2_2:1013905-1013924 Msa0229320:intron 35.0%
TTGCTGTATGTGATGCTAAT+GGG - chr2_2:1013906-1013925 Msa0229320:intron 35.0%
ATGTTAACAATACCTGAGCA+CGG + chr2_2:1014093-1014112 None:intergenic 35.0%
ATACTTTACAAGACTTGGAG+TGG - chr2_2:1014129-1014148 Msa0229320:intron 35.0%
CTCTTTGAATATGTGGTCAA+GGG + chr2_2:1014166-1014185 None:intergenic 35.0%
TCTCTTTGAATATGTGGTCA+AGG + chr2_2:1014167-1014186 None:intergenic 35.0%
TTATGTCTATAACAGACTCC+AGG - chr2_2:1014252-1014271 Msa0229320:intron 35.0%
GGAATGAAATAGGAGAAACT+TGG - chr2_2:1014917-1014936 Msa0229320:CDS 35.0%
AATGACTCGTGTTGAAAACA+TGG - chr2_2:1014955-1014974 Msa0229320:CDS 35.0%
TCTTAGCACTGCATTCTATT+TGG - chr2_2:1015206-1015225 Msa0229320:intron 35.0%
! ATCACACTTCCTAGATTTTC+TGG - chr2_2:1015302-1015321 Msa0229320:intron 35.0%
! TCACACTTCCTAGATTTTCT+GGG - chr2_2:1015303-1015322 Msa0229320:intron 35.0%
!!! TAGTTTTGGCAATTGCTGAT+AGG - chr2_2:1015354-1015373 Msa0229320:intron 35.0%
AATGGATCATTTGTGGAACT+AGG + chr2_2:1015509-1015528 None:intergenic 35.0%
AGTTCCACAAATGATCCATT+TGG - chr2_2:1015509-1015528 Msa0229320:intron 35.0%
GGAATATAGTGCAAAGTGTA+AGG + chr2_2:1015646-1015665 None:intergenic 35.0%
GAGGATTTACTTTAATTGGC+TGG + chr2_2:1015741-1015760 None:intergenic 35.0%
CTTACTTCGTCTATTACTTG+AGG + chr2_2:1015760-1015779 None:intergenic 35.0%
TGATGATAACAAGAAGCAAC+TGG + chr2_2:1015811-1015830 None:intergenic 35.0%
!!! GCTGATGATCATCGTTTTTT+AGG - chr2_2:1015855-1015874 Msa0229320:intron 35.0%
TCGAAGATTAGAGCAATTTC+TGG - chr2_2:1015894-1015913 Msa0229320:CDS 35.0%
!! GTTAAAGGAATGGATTATCC+TGG - chr2_2:1016039-1016058 Msa0229320:intron 35.0%
ACCTTATAGATAAACCTTGG+TGG - chr2_2:1016102-1016121 Msa0229320:CDS 35.0%
TCCACCAAGGTTTATCTATA+AGG + chr2_2:1016106-1016125 None:intergenic 35.0%
GTTAAAAAGATGTTGGAGAC+TGG + chr2_2:1016137-1016156 None:intergenic 35.0%
GTAAGAATGGTTTAGGCTTT+AGG + chr2_2:1016296-1016315 None:intergenic 35.0%
CATGCTTGTAAGAATGGTTT+AGG + chr2_2:1016303-1016322 None:intergenic 35.0%
GCTAATCATGCTTGTAAGAA+TGG + chr2_2:1016309-1016328 None:intergenic 35.0%
!! GCAGATCAGTGAGTTTTAAT+AGG - chr2_2:1016476-1016495 Msa0229320:intron 35.0%
CACCTGTTAACAAAATACAG+CGG + chr2_2:1016622-1016641 None:intergenic 35.0%
! ATTTTGTTAACAGGTGGACA+AGG - chr2_2:1016626-1016645 Msa0229320:CDS 35.0%
! TTTTGTTAACAGGTGGACAA+GGG - chr2_2:1016627-1016646 Msa0229320:CDS 35.0%
! TCTGATTTGATTCAAGAGTC+AGG + chr2_2:1016831-1016850 None:intergenic 35.0%
!!! ATGTATCCTGCGTTTTTTTG+GGG + chr2_2:1016984-1017003 None:intergenic 35.0%
!!! GTATGTATCCTGCGTTTTTT+TGG + chr2_2:1016986-1017005 None:intergenic 35.0%
GAGTATGCTTCAACTACTTT+AGG + chr2_2:1017237-1017256 None:intergenic 35.0%
AAGTAGTTGAAGCATACTCT+CGG - chr2_2:1017238-1017257 Msa0229320:intron 35.0%
! AATGCAGGCCAAAACATTTT+TGG + chr2_2:1017428-1017447 None:intergenic 35.0%
! TTTTTCTCCCAAAAGAGGTT+TGG - chr2_2:1017566-1017585 Msa0229320:intron 35.0%
TTTCCTATTACAGTATCAGG+TGG - chr2_2:1017737-1017756 Msa0229320:intron 35.0%
TCTCTCTTCATTTGTCTCAA+AGG + chr2_2:1017772-1017791 None:intergenic 35.0%
! CAAATGAAGAGAGAGTTTTG+TGG - chr2_2:1017778-1017797 Msa0229320:intron 35.0%
ATTTGTTCTCCAACTTTCCT+TGG - chr2_2:1017882-1017901 Msa0229320:intron 35.0%
! ATTACTAGTTTCTGTCGACA+TGG - chr2_2:1017919-1017938 Msa0229320:intron 35.0%
TAAGGTCTGCAATTCCTTTA+GGG + chr2_2:1018278-1018297 None:intergenic 35.0%
GATATGTCAAAATACACTGC+CGG + chr2_2:1018404-1018423 None:intergenic 35.0%
TGACATATCTGAGCATATAG+GGG - chr2_2:1018415-1018434 Msa0229320:CDS 35.0%
CAAATTGTTTCAGACCTTCA+AGG + chr2_2:1018493-1018512 None:intergenic 35.0%
! CTTGAAGGTCTGAAACAATT+TGG - chr2_2:1018491-1018510 Msa0229320:intron 35.0%
GGGAGTCAATGTTGAATTTG+AGG - chr2_2:1013047-1013066 Msa0229320:three_prime_UTR 40.0%
GGCCAAATTCTGATTCCAAA+AGG - chr2_2:1013202-1013221 Msa0229320:three_prime_UTR 40.0%
! TTGCTTGACGAGGTAAGTTT+TGG - chr2_2:1013226-1013245 Msa0229320:three_prime_UTR 40.0%
!! AACTTTCCAAGCACTGGAAT+AGG + chr2_2:1013341-1013360 None:intergenic 40.0%
CATTAGTAACCCACGAATTC+TGG - chr2_2:1013580-1013599 Msa0229320:CDS 40.0%
CAATTGATGAAGCTACAGTG+AGG - chr2_2:1014054-1014073 Msa0229320:intron 40.0%
TCGGAGTCTCTTTGAATATG+TGG + chr2_2:1014173-1014192 None:intergenic 40.0%
GAGACTCCGATATCATGTTA+AGG - chr2_2:1014183-1014202 Msa0229320:intron 40.0%
ACTCCAAAAGCTTAAGCTAG+TGG - chr2_2:1014213-1014232 Msa0229320:intron 40.0%
CTCCAAAAGCTTAAGCTAGT+GGG - chr2_2:1014214-1014233 Msa0229320:intron 40.0%
!! AACCCACTAGCTTAAGCTTT+TGG + chr2_2:1014219-1014238 None:intergenic 40.0%
TTGATCTCACTATAAAGGCC+TGG + chr2_2:1014273-1014292 None:intergenic 40.0%
ATTCAACAGGCACAAAGGTT+GGG + chr2_2:1014424-1014443 None:intergenic 40.0%
ATTGGATTCAACAGGCACAA+AGG + chr2_2:1014429-1014448 None:intergenic 40.0%
! ATGAGTTGGACACTCGTAAA+AGG - chr2_2:1014526-1014545 Msa0229320:intron 40.0%
TACTAAGCTAAGTTGCATCC+TGG - chr2_2:1014979-1014998 Msa0229320:intron 40.0%
AAACTCAGTGACAACTGATG+TGG + chr2_2:1015068-1015087 None:intergenic 40.0%
ACTGAGTTTACTGCACTTTC+AGG - chr2_2:1015079-1015098 Msa0229320:intron 40.0%
TACTGCACTTTCAGGAGTAA+TGG - chr2_2:1015087-1015106 Msa0229320:intron 40.0%
ACTGCACTTTCAGGAGTAAT+GGG - chr2_2:1015088-1015107 Msa0229320:intron 40.0%
TAGAGATGGATACTCACAAC+AGG - chr2_2:1015126-1015145 Msa0229320:intron 40.0%
! AGGAAGTGTGATCTCATACA+AGG + chr2_2:1015294-1015313 None:intergenic 40.0%
! CACACTTCCTAGATTTTCTG+GGG - chr2_2:1015304-1015323 Msa0229320:intron 40.0%
AGTATGTCCCCAGAAAATCT+AGG + chr2_2:1015314-1015333 None:intergenic 40.0%
ATACTTCCTAAAAGTGACGC+TGG - chr2_2:1015329-1015348 Msa0229320:intron 40.0%
CAATTGCTGATAGGTGAAAC+TGG - chr2_2:1015363-1015382 Msa0229320:intron 40.0%
CCATGTTGTTAGACTCAGTT+AGG + chr2_2:1015411-1015430 None:intergenic 40.0%
CCTAACTGAGTCTAACAACA+TGG - chr2_2:1015408-1015427 Msa0229320:intron 40.0%
TGTCTGCAGATTAGATAGCT+TGG - chr2_2:1015457-1015476 Msa0229320:intron 40.0%
TGCAGATTAGATAGCTTGGT+AGG - chr2_2:1015461-1015480 Msa0229320:intron 40.0%
! TAGCTTGGTAGGTTTGTTCT+CGG - chr2_2:1015472-1015491 Msa0229320:intron 40.0%
CAGACCAAATGGATCATTTG+TGG + chr2_2:1015516-1015535 None:intergenic 40.0%
CACTTTGCACTATATTCCTC+AGG - chr2_2:1015648-1015667 Msa0229320:intron 40.0%
TATTCCTCAGGTGCAATTGT+TGG - chr2_2:1015660-1015679 Msa0229320:intron 40.0%
!! CCAGAGCCTCTTTAAAATCT+AGG + chr2_2:1015702-1015721 None:intergenic 40.0%
!! CCTAGATTTTAAAGAGGCTC+TGG - chr2_2:1015699-1015718 Msa0229320:intron 40.0%
TCTTGTTAAGGAGCAGCTTT+GGG + chr2_2:1016333-1016352 None:intergenic 40.0%
ATCTTGTTAAGGAGCAGCTT+TGG + chr2_2:1016334-1016353 None:intergenic 40.0%
AACTCACTGATCTGCAACTA+AGG + chr2_2:1016471-1016490 None:intergenic 40.0%
GTTAACAAAATACAGCGGCA+CGG + chr2_2:1016617-1016636 None:intergenic 40.0%
! TGCCGCTGTATTTTGTTAAC+AGG - chr2_2:1016617-1016636 Msa0229320:CDS 40.0%
! CGCTGTATTTTGTTAACAGG+TGG - chr2_2:1016620-1016639 Msa0229320:CDS 40.0%
TTTGTTAACAGGTGGACAAG+GGG - chr2_2:1016628-1016647 Msa0229320:CDS 40.0%
GGGCAATTTCTGTAGCTAAA+AGG + chr2_2:1016884-1016903 None:intergenic 40.0%
! TTCAAGTCCATTAGCCTCTT+TGG - chr2_2:1017037-1017056 Msa0229320:intron 40.0%
CATAAGTTTAGAGGCTGAAG+AGG + chr2_2:1017090-1017109 None:intergenic 40.0%
! GGCAATTTTTCTCCCAAAAG+AGG - chr2_2:1017561-1017580 Msa0229320:intron 40.0%
CATCCACCTGATACTGTAAT+AGG + chr2_2:1017743-1017762 None:intergenic 40.0%
ATTACAGTATCAGGTGGATG+AGG - chr2_2:1017743-1017762 Msa0229320:intron 40.0%
!! CTAGAGATGTAGAAAGTACC+AGG + chr2_2:1017837-1017856 None:intergenic 40.0%
GAAATTGCTGATCTCCCTAA+AGG - chr2_2:1018261-1018280 Msa0229320:CDS 40.0%
GTAAGGTCTGCAATTCCTTT+AGG + chr2_2:1018279-1018298 None:intergenic 40.0%
!! GTTACCAGGATTTTAAGGGT+TGG - chr2_2:1018302-1018321 Msa0229320:intron 40.0%
!! TTTTATCGGAAGCATGCATC+CGG - chr2_2:1018382-1018401 Msa0229320:intron 40.0%
GACATATCTGAGCATATAGG+GGG - chr2_2:1018416-1018435 Msa0229320:CDS 40.0%
TGCATTCAACTAGGCTAAGA+GGG + chr2_2:1018529-1018548 None:intergenic 40.0%
TTGCATTCAACTAGGCTAAG+AGG + chr2_2:1018530-1018549 None:intergenic 40.0%
! TCCAAAAGGTTTGCTTGACG+AGG - chr2_2:1013216-1013235 Msa0229320:three_prime_UTR 45.0%
! ACCTCGTCAAGCAAACCTTT+TGG + chr2_2:1013220-1013239 None:intergenic 45.0%
! TTAGCTTGGCCAGAATTCGT+GGG + chr2_2:1013592-1013611 None:intergenic 45.0%
!! TTTAGCTTGGCCAGAATTCG+TGG + chr2_2:1013593-1013612 None:intergenic 45.0%
!! GGTGTTTTTGCATAACCTGC+AGG + chr2_2:1013877-1013896 None:intergenic 45.0%
GATGAAGCTACAGTGAGGAA+AGG - chr2_2:1014059-1014078 Msa0229320:intron 45.0%
TTCAACAGGCACAAAGGTTG+GGG + chr2_2:1014423-1014442 None:intergenic 45.0%
GATTCAACAGGCACAAAGGT+TGG + chr2_2:1014425-1014444 None:intergenic 45.0%
GGAGTCCCACGAAACAAAAT+TGG + chr2_2:1014447-1014466 None:intergenic 45.0%
!! ACGAGTCATTTTGTCCAGCA+TGG + chr2_2:1014945-1014964 None:intergenic 45.0%
TGATGTGGAAAGGTCAGACA+TGG + chr2_2:1015053-1015072 None:intergenic 45.0%
CAGTGACAACTGATGTGGAA+AGG + chr2_2:1015063-1015082 None:intergenic 45.0%
CTGCACTTTCAGGAGTAATG+GGG - chr2_2:1015089-1015108 Msa0229320:intron 45.0%
ATGCAGTGCTAAGACTGCAA+GGG + chr2_2:1015200-1015219 None:intergenic 45.0%
AATGCAGTGCTAAGACTGCA+AGG + chr2_2:1015201-1015220 None:intergenic 45.0%
! CTGCAAGATTTGAAGTGACG+AGG + chr2_2:1015261-1015280 None:intergenic 45.0%
TCAAATCTTGCAGACTGCAG+AGG - chr2_2:1015268-1015287 Msa0229320:intron 45.0%
!!! ACTATGCCAGCGTCACTTTT+AGG + chr2_2:1015338-1015357 None:intergenic 45.0%
! AAGTGACGCTGGCATAGTTT+TGG - chr2_2:1015340-1015359 Msa0229320:intron 45.0%
GAGATTCTTCGCAGACCAAA+TGG + chr2_2:1015527-1015546 None:intergenic 45.0%
GGTCTGCGAAGAATCTCATA+TGG - chr2_2:1015530-1015549 Msa0229320:intron 45.0%
ACTGGGTTTAAACTCCACCA+AGG + chr2_2:1016119-1016138 None:intergenic 45.0%
TTGTTAACAGGTGGACAAGG+GGG - chr2_2:1016629-1016648 Msa0229320:CDS 45.0%
!!! TGCTGATTTTGCTGCTAGAC+CGG + chr2_2:1016703-1016722 None:intergenic 45.0%
ACTTCACCCCAAAAAAACGC+AGG - chr2_2:1016975-1016994 Msa0229320:intron 45.0%
GAAAAGGCCAAAGAGGCTAA+TGG + chr2_2:1017047-1017066 None:intergenic 45.0%
ACTCAGTGAAAAGGCCAAAG+AGG + chr2_2:1017054-1017073 None:intergenic 45.0%
TTCCCACGGACAATTCTAGT+TGG + chr2_2:1017264-1017283 None:intergenic 45.0%
AACTAGAATTGTCCGTGGGA+AGG - chr2_2:1017263-1017282 Msa0229320:intron 45.0%
GAAGGAAGACGAGCTTGATT+CGG - chr2_2:1017281-1017300 Msa0229320:intron 45.0%
! GTCCACACCAAACCTCTTTT+GGG + chr2_2:1017576-1017595 None:intergenic 45.0%
! TGTCCACACCAAACCTCTTT+TGG + chr2_2:1017577-1017596 None:intergenic 45.0%
GCAGACCTTACATTGTTACC+AGG - chr2_2:1018288-1018307 Msa0229320:CDS 45.0%
CTTGCCAACCCTTAAAATCC+TGG + chr2_2:1018309-1018328 None:intergenic 45.0%
GGATGCATGCTTCCGATAAA+AGG + chr2_2:1018383-1018402 None:intergenic 45.0%
GCATTCAACTAGGCTAAGAG+GGG + chr2_2:1018528-1018547 None:intergenic 45.0%
GCTAACGATTGTACTCCTGC+AGG - chr2_2:1013859-1013878 Msa0229320:CDS 50.0%
AAGGAAATGAAGCCGTGCTC+AGG - chr2_2:1014078-1014097 Msa0229320:intron 50.0%
AAGGTCAGACATGGCAAGTG+AGG + chr2_2:1015044-1015063 None:intergenic 50.0%
CGTCACTATGCGCTTAGAGA+TGG - chr2_2:1015112-1015131 Msa0229320:intron 50.0%
TGCAGTGCTAAGACTGCAAG+GGG + chr2_2:1015199-1015218 None:intergenic 50.0%
! TTGGTAGGTTTGTTCTCGGC+TGG - chr2_2:1015476-1015495 Msa0229320:intron 50.0%
TCCTCAGGTGCAATTGTTGG+TGG - chr2_2:1015663-1015682 Msa0229320:intron 50.0%
TCCACCAACAATTGCACCTG+AGG + chr2_2:1015667-1015686 None:intergenic 50.0%
TTCGTTCCATCCTTGCAGAG+AGG - chr2_2:1016667-1016686 Msa0229320:CDS 50.0%
TCGTTCCATCCTTGCAGAGA+GGG - chr2_2:1016668-1016687 Msa0229320:CDS 50.0%
GAAAATTGGCCCTCTCTGCA+AGG + chr2_2:1016680-1016699 None:intergenic 50.0%
TGCTGCTAGACCGGGAAAAT+TGG + chr2_2:1016694-1016713 None:intergenic 50.0%
!! GCTGATTTTGCTGCTAGACC+GGG + chr2_2:1016702-1016721 None:intergenic 50.0%
AGTTTAGAGGCTGAAGAGGC+CGG + chr2_2:1017086-1017105 None:intergenic 50.0%
GGCCAACTAGAATTGTCCGT+GGG - chr2_2:1017259-1017278 Msa0229320:intron 50.0%
!! CTCCCAAAAGAGGTTTGGTG+TGG - chr2_2:1017571-1017590 Msa0229320:intron 50.0%
ATAAAAGGCCGCGTTTAGGG+GGG + chr2_2:1018368-1018387 None:intergenic 50.0%
GATAAAAGGCCGCGTTTAGG+GGG + chr2_2:1018369-1018388 None:intergenic 50.0%
CGATAAAAGGCCGCGTTTAG+GGG + chr2_2:1018370-1018389 None:intergenic 50.0%
CCGATAAAAGGCCGCGTTTA+GGG + chr2_2:1018371-1018390 None:intergenic 50.0%
! CCCTAAACGCGGCCTTTTAT+CGG - chr2_2:1018368-1018387 Msa0229320:intron 50.0%
TCCGATAAAAGGCCGCGTTT+AGG + chr2_2:1018372-1018391 None:intergenic 50.0%
! GAGGCACCTATTCCAGTGCT+TGG - chr2_2:1013332-1013351 Msa0229320:CDS 55.0%
GGAGAAACTTGGGACCATGC+TGG - chr2_2:1014928-1014947 Msa0229320:CDS 55.0%
ATTGGCCCTCTCTGCAAGGA+TGG + chr2_2:1016676-1016695 None:intergenic 55.0%
! GCAGAGAGGGCCAATTTTCC+CGG - chr2_2:1016681-1016700 Msa0229320:CDS 55.0%
CGGCCAACTAGAATTGTCCG+TGG - chr2_2:1017258-1017277 Msa0229320:intron 55.0%
CAAGCTCGTCTTCCTTCCCA+CGG + chr2_2:1017278-1017297 None:intergenic 55.0%
!! GGAAGACGAGCTTGATTCGG+AGG - chr2_2:1017284-1017303 Msa0229320:intron 55.0%
TAAAAGGCCGCGTTTAGGGG+GGG + chr2_2:1018367-1018386 None:intergenic 55.0%
TGGCAAGTGAGGCAGCTTCC+CGG + chr2_2:1015033-1015052 None:intergenic 60.0%
CAATCCACCCCCCCTAAACG+CGG - chr2_2:1018357-1018376 Msa0229320:intron 60.0%
GCGGCACGGTCAAACTCACC+TGG + chr2_2:1016603-1016622 None:intergenic 65.0%
AAGGCCGCGTTTAGGGGGGG+TGG + chr2_2:1018364-1018383 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 1013000 1018634 1013000 ID=Msa0229320;Name=Msa0229320
chr2_2 mRNA 1013000 1018634 1013000 ID=Msa0229320-mRNA-1;Parent=Msa0229320;Name=Msa0229320-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.8|0.81|1|0.86|0.93|16|317|480
chr2_2 exon 1013000 1013415 1013000 ID=Msa0229320-mRNA-1:exon:335;Parent=Msa0229320-mRNA-1
chr2_2 exon 1013538 1013623 1013538 ID=Msa0229320-mRNA-1:exon:334;Parent=Msa0229320-mRNA-1
chr2_2 exon 1013797 1013884 1013797 ID=Msa0229320-mRNA-1:exon:333;Parent=Msa0229320-mRNA-1
chr2_2 exon 1014329 1014430 1014329 ID=Msa0229320-mRNA-1:exon:332;Parent=Msa0229320-mRNA-1
chr2_2 exon 1014906 1014995 1014906 ID=Msa0229320-mRNA-1:exon:331;Parent=Msa0229320-mRNA-1
chr2_2 exon 1015719 1015757 1015719 ID=Msa0229320-mRNA-1:exon:330;Parent=Msa0229320-mRNA-1
chr2_2 exon 1015860 1015964 1015860 ID=Msa0229320-mRNA-1:exon:329;Parent=Msa0229320-mRNA-1
chr2_2 exon 1016078 1016168 1016078 ID=Msa0229320-mRNA-1:exon:328;Parent=Msa0229320-mRNA-1
chr2_2 exon 1016259 1016353 1016259 ID=Msa0229320-mRNA-1:exon:327;Parent=Msa0229320-mRNA-1
chr2_2 exon 1016487 1016705 1016487 ID=Msa0229320-mRNA-1:exon:326;Parent=Msa0229320-mRNA-1
chr2_2 exon 1017044 1017137 1017044 ID=Msa0229320-mRNA-1:exon:325;Parent=Msa0229320-mRNA-1
chr2_2 exon 1017564 1017580 1017564 ID=Msa0229320-mRNA-1:exon:324;Parent=Msa0229320-mRNA-1
chr2_2 exon 1017682 1017753 1017682 ID=Msa0229320-mRNA-1:exon:323;Parent=Msa0229320-mRNA-1
chr2_2 exon 1018231 1018317 1018231 ID=Msa0229320-mRNA-1:exon:322;Parent=Msa0229320-mRNA-1
chr2_2 exon 1018397 1018486 1018397 ID=Msa0229320-mRNA-1:exon:321;Parent=Msa0229320-mRNA-1
chr2_2 exon 1018566 1018634 1018566 ID=Msa0229320-mRNA-1:exon:320;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1018566 1018634 1018566 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1018397 1018486 1018397 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1018231 1018317 1018231 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1017682 1017753 1017682 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1017564 1017580 1017564 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1017044 1017137 1017044 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1016487 1016705 1016487 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1016259 1016353 1016259 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1016078 1016168 1016078 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1015860 1015964 1015860 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1015719 1015757 1015719 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1014906 1014995 1014906 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1014329 1014430 1014329 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1013797 1013884 1013797 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1013538 1013623 1013538 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 CDS 1013317 1013415 1013317 ID=Msa0229320-mRNA-1:cds;Parent=Msa0229320-mRNA-1
chr2_2 three_prime_UTR 1013000 1013316 1013000 ID=Msa0229320-mRNA-1:three_prime_utr;Parent=Msa0229320-mRNA-1
Gene Sequence

>Msa0229320

TTGCAGATAGAAAATGCAGAATCTTATTCACTTACAATGAAAAATACGGGAGTCAATGTTGAATTTGAGGACCGTAAGAAAAAAATTGTAGAGCTATCTAATACATTAGCAGAAAGTGTAAATGGCCAAATTCTGATTCCAAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAGGATCTTTTGACTATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGTGATGCTAATGGGCAATTGCTGCCTTACTTTATTGCTCAATTGATGAAGCTACAGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGTTGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAACTTGGGACCATGCTGGACAAAATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCATCCTGGATATTAATGAAGATACACAACAAATTATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTTCCACATCAGTTGTCACTGAGTTTACTGCACTTTCAGGAGTAATGGGGCGTCACTATGCGCTTAGAGATGGATACTCACAACAGACTGCAGAGGCCTTGTATGAGATCACACTTCCTAGATTTTCTGGGGACATACTTCCTAAAAGTGACGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCTTGGTAGGTTTGTTCTCGGCTGGCTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAATTGTTGGTGGAAAATAATAAAAACCTAGATTTTAAAGAGGCTCTGGAACTTGCTGCAGATGTCCAGCCAATTAAAGTAAATCCTCAAGTAATAGACGAAGCACTTCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTGGACAAGGGGGTGAGTGCAGAAATTGTTCGTTCCATCCTTGCAGAGAGGGCCAATTTTCCCGGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAAAGGCGAGCTTTTCCCTAAAGTAGTTGAAGCATACTCTCGGCCAACTAGAATTGTCCGTGGGAAGGAAGACGAGCTTGATTCGGAGTATCAGGTGGATGAGGCTGCCTTTGAGACAAATGAAGAGAGAGTTTTGTGGAACACATTTTTGTCAGTTAAAAAGAGTATCAATCCTGGTCTAGACATCGATGATTTTGTTGAAATTTCATCTCAGCTTATACAACCACTCGAAGATTTCTTTAATAACGTCTTTGTAATGGTGGATGATGCTAAGATCAGAAAAAACAGGCTAGCTCTGCTAAAAGAAATTGCTGATCTCCCTAAAGGAATTGCAGACCTTACATTGTTACCAGGATTTTAA

Protein sequence

>Msa0229320

LQIENAESYSLTMKNTGVNVEFEDRKKKIVELSNTLAESVNGQILIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFIAQLMKLQARYEDAKFFYELDTRKRFSEFREQLKNILFHEKLGTMLDKMTRVENMVTKLSCILDINEDTQQIIREAASLAMSDLSTSVVTEFTALSGVMGRHYALRDGYSQQTAEALYEITLPRFSGDILPKSDAGIVLAIADRLDSLVGLFSAGCQPSSTNDPFGLRRISYGLVQLLVENNKNLDFKEALELAADVQPIKVNPQVIDEALQFVTRRLEQFLVDKGVSAEIVRSILAERANFPGLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKEDELDSEYQVDEAAFETNEERVLWNTFLSVKKSINPGLDIDDFVEISSQLIQPLEDFFNNVFVMVDDAKIRKNRLALLKEIADLPKGIADLTLLPGF*