AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411800 MtrunA17_Chr7g0272811 75.111 450 74 5 4 419 2 447 0.0 666
Msa1411800 MtrunA17_Chr2g0288091 66.385 473 107 7 1 421 32 504 0.0 614
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411800 AT4G21770.1 52.511 438 122 7 46 420 58 472 1.33e-158 456
Msa1411800 AT4G21770.2 53.846 416 108 6 66 420 1 393 9.24e-155 443

Find 128 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTCAACAAGCATGAATT+TGG 0.218911 tig0023841:-71066 Msa1411800:CDS
AAGAAACGGCTGTAATAAAT+TGG 0.246669 tig0023841:-66937 Msa1411800:CDS
ACATTCATATATGAATTCTT+TGG 0.275373 tig0023841:+66272 None:intergenic
GTTGCAGATCTGATTCAATT+TGG 0.281393 tig0023841:-70761 Msa1411800:CDS
TCTGCAGTCAATAAATTTAC+AGG 0.294359 tig0023841:+68437 None:intergenic
ACAACTAAGTGTTCAATTCT+TGG 0.294603 tig0023841:+70943 None:intergenic
TGCTCTGCAGAGTTGCTAAA+AGG 0.301140 tig0023841:-68494 Msa1411800:intron
CTGTCGTAGCCTCGGCGTTC+CGG 0.315206 tig0023841:-71124 Msa1411800:CDS
TTCAAGCTTGTCAAATTTCA+TGG 0.315468 tig0023841:-66874 Msa1411800:CDS
TGTAAAATCAACCTTCTTAC+TGG 0.321032 tig0023841:-68281 Msa1411800:CDS
TACATAGTATCACCAATTAT+TGG 0.340825 tig0023841:+67046 None:intergenic
ACTTGATCTTGGTCTATTAG+AGG 0.347209 tig0023841:-66459 Msa1411800:three_prime_UTR
CAACAATGAGGTGAGAATTA+TGG 0.352096 tig0023841:+66354 None:intergenic
CATTCATATATGAATTCTTT+GGG 0.352728 tig0023841:+66273 None:intergenic
ACAATACATCTGTAAAGCTT+TGG 0.353276 tig0023841:-70899 Msa1411800:CDS
TTTACTCCTTCACGTTGAGC+TGG 0.355157 tig0023841:+71195 None:intergenic
GAGGTGTTTGTTAAGTGATA+TGG 0.358711 tig0023841:+71083 None:intergenic
GCTTGCAAGGCACCAATAAT+TGG 0.358878 tig0023841:-67058 Msa1411800:CDS
AATCCTGGACTTAATCCATT+TGG 0.359578 tig0023841:-66995 Msa1411800:CDS
GGGGAGTCCATAGTGTTAAA+AGG 0.359708 tig0023841:+66549 None:intergenic
ACAGAGCTGGTTTGCCTTGG+TGG 0.361729 tig0023841:-66832 Msa1411800:CDS
ATTGTATCTATACTTGATCT+TGG 0.368993 tig0023841:-66470 Msa1411800:three_prime_UTR
GTAGCGGTTGGAGGAGGTTC+CGG 0.372880 tig0023841:+70713 None:intergenic
ATGAAATTTGACAAGCTTGA+AGG 0.384279 tig0023841:+66876 None:intergenic
TTACAGATGTATTGTAAAAC+AGG 0.388608 tig0023841:+70907 None:intergenic
ATTTAGTCCAACAGCACATC+TGG 0.397876 tig0023841:+66768 None:intergenic
GCAGCTTCTCCTTTACCAAT+TGG 0.403389 tig0023841:-69248 Msa1411800:CDS
CAGCTGCCGCGGAACAAGAT+TGG 0.406189 tig0023841:+71144 None:intergenic
GAAAATGAAGAGTGTGTACC+TGG 0.406289 tig0023841:+66528 None:intergenic
CAACTGTCATGGGTGGATAT+AGG 0.416224 tig0023841:+66240 None:intergenic
CTGATAAGTGTCTTATATTG+TGG 0.425243 tig0023841:-68467 Msa1411800:CDS
TGCACTCGCAGGTAAGTTCC+TGG 0.426326 tig0023841:+70557 None:intergenic
CGGCGTCATGCTTGTGATCA+AGG 0.427502 tig0023841:-66612 Msa1411800:three_prime_UTR
CAAAGAAGCAACTGAACCAT+TGG 0.428367 tig0023841:-70669 Msa1411800:CDS
ATTTACCTAGGATAACGCTT+GGG 0.431357 tig0023841:+70527 None:intergenic
CACAATATAAGACACTTATC+AGG 0.431409 tig0023841:+68468 None:intergenic
AGTCGAGGAGCCGTGTTAGT+AGG 0.435108 tig0023841:+69203 None:intergenic
TGAAGGAGTAAAAGATAAGA+TGG 0.435507 tig0023841:-71184 Msa1411800:exon
TTGAACAACAATAGCTGGCC+AGG 0.441571 tig0023841:+68358 None:intergenic
AGGTGTTTGTTAAGTGATAT+GGG 0.442132 tig0023841:+71084 None:intergenic
ATGAATTTGGTTGGTGTTGT+CGG 0.448484 tig0023841:-71053 Msa1411800:CDS
GAAGCAATCGATCATACTTC+GGG 0.456347 tig0023841:+70989 None:intergenic
CGCGGCAGCTGTCGTAGCCT+CGG 0.459951 tig0023841:-71132 Msa1411800:CDS
GCTTCGAGAAATCTGACAAA+TGG 0.460197 tig0023841:-66407 Msa1411800:three_prime_UTR
TTTACAGAGCTGGTTTGCCT+TGG 0.460289 tig0023841:-66835 Msa1411800:CDS
AATATTGTGTTGAAGATTGT+GGG 0.461791 tig0023841:-68331 Msa1411800:CDS
TAGCCTCGGCGTTCCGGATG+CGG 0.465407 tig0023841:-71118 Msa1411800:CDS
AGCTCAATTTGCTGCTTGCA+AGG 0.465415 tig0023841:-67071 Msa1411800:CDS
TTAGGTGCTATGAGATTGAC+TGG 0.466195 tig0023841:-70421 Msa1411800:intron
TCTTACTGGTCGAACTCATC+AGG 0.474622 tig0023841:-68267 Msa1411800:intron
GGAACCGCACTCGCCGCATC+CGG 0.475158 tig0023841:+71105 None:intergenic
ATTTGCTCTGCAGTAGCGGT+TGG 0.475754 tig0023841:+70701 None:intergenic
TTACTCCTTCACGTTGAGCT+GGG 0.475952 tig0023841:+71196 None:intergenic
TGCTCTGCAGTAGCGGTTGG+AGG 0.479465 tig0023841:+70704 None:intergenic
AAAGAGCCTAGTGTTGCAAT+TGG 0.490916 tig0023841:-66899 Msa1411800:CDS
ATTGACTGCAGATGGTATCA+AGG 0.491296 tig0023841:-68426 Msa1411800:CDS
GATGAATACATTTACAGAGC+TGG 0.491345 tig0023841:-66845 Msa1411800:CDS
ATGAGATTGACTGGAGATCA+AGG 0.491460 tig0023841:-70412 Msa1411800:CDS
AGTAGCAGATTGCATAAAAG+AGG 0.495334 tig0023841:+66506 None:intergenic
TTTCCAAATGGATTAAGTCC+AGG 0.503496 tig0023841:+66992 None:intergenic
TAGTGCTTAATGATTCCAAT+TGG 0.508620 tig0023841:+69233 None:intergenic
TCATCTTGAACAACAATAGC+TGG 0.509716 tig0023841:+68353 None:intergenic
TGGAATGCAGAAAGATTCCC+TGG 0.510667 tig0023841:-68376 Msa1411800:CDS
GCGTGCGACATTTGCCACTT+CGG 0.510997 tig0023841:-66632 Msa1411800:three_prime_UTR
TATTTGTCATCTTGAGGTCA+TGG 0.513587 tig0023841:-68396 Msa1411800:CDS
TAAGATGGGTTCGGTGGCGG+TGG 0.514367 tig0023841:-71169 Msa1411800:exon
ATCATCTCTGCAATTGCAGC+AGG 0.520543 tig0023841:+67019 None:intergenic
CACTGCAATGGTAATGTTGA+GGG 0.525656 tig0023841:-66587 Msa1411800:three_prime_UTR
AGTAAAAGATAAGATGGGTT+CGG 0.528067 tig0023841:-71178 Msa1411800:exon
TCAAGCTTGTCAAATTTCAT+GGG 0.528140 tig0023841:-66873 Msa1411800:CDS
CTTGGCGGAGATTTGTGTGT+AGG 0.530094 tig0023841:+70961 None:intergenic
TGAACTTATCTATTGTGTTG+CGG 0.531789 tig0023841:-66669 Msa1411800:three_prime_UTR
TTAATGATTCCAATTGGTAA+AGG 0.533290 tig0023841:+69239 None:intergenic
GGAAGCAATCGATCATACTT+CGG 0.533740 tig0023841:+70988 None:intergenic
CAATAGATAAGTTCAATTGA+AGG 0.536839 tig0023841:+66677 None:intergenic
ATTGCAGAGATGATTAATCC+TGG 0.537124 tig0023841:-67010 Msa1411800:CDS
TCTGCAGTAGCGGTTGGAGG+AGG 0.537831 tig0023841:+70707 None:intergenic
GTAAATTTATTGACTGCAGA+TGG 0.538147 tig0023841:-68434 Msa1411800:CDS
TGGTGGAGGTGTTAAAATGC+TGG 0.538363 tig0023841:-66815 Msa1411800:exon
GAGCTGGTTTGCCTTGGTGG+AGG 0.539193 tig0023841:-66829 Msa1411800:CDS
GTAGCTTACTGTTTCACTGA+TGG 0.541763 tig0023841:+71011 None:intergenic
GAATATTGTGTTGAAGATTG+TGG 0.542188 tig0023841:-68332 Msa1411800:CDS
TCTAATTTGCTCTGCAGTAG+CGG 0.543133 tig0023841:+70697 None:intergenic
AGATAAGATGGGTTCGGTGG+CGG 0.545265 tig0023841:-71172 Msa1411800:exon
GAATTTGGCACTTACAAATG+AGG 0.550102 tig0023841:+70871 None:intergenic
AATTTACCTAGGATAACGCT+TGG 0.552883 tig0023841:+70526 None:intergenic
CGAGGCTACGACAGCTGCCG+CGG 0.558845 tig0023841:+71133 None:intergenic
CTGGAATTGTTCTTGAGTTG+AGG 0.559302 tig0023841:-66796 Msa1411800:three_prime_UTR
CGTTCCGGATGCGGCGAGTG+CGG 0.562174 tig0023841:-71109 Msa1411800:CDS
CACTTAGTTGTTTCACGAGG+AGG 0.563811 tig0023841:-70931 Msa1411800:CDS
ACTAAGTGTTCAATTCTTGG+CGG 0.566453 tig0023841:+70946 None:intergenic
TGAAGGCCAATTGCAACACT+AGG 0.568515 tig0023841:+66893 None:intergenic
AACCAAATTCATGCTTGTTG+AGG 0.571349 tig0023841:+71064 None:intergenic
ATGGCATATTTGTCATCTTG+AGG 0.572439 tig0023841:-68402 Msa1411800:CDS
TCAACAAGCATGAATTTGGT+TGG 0.576730 tig0023841:-71062 Msa1411800:CDS
TTGACTGCAGATGGTATCAA+GGG 0.577829 tig0023841:-68425 Msa1411800:CDS
GATGAGTTCGACCAGTAAGA+AGG 0.590412 tig0023841:+68270 None:intergenic
TTACATACAGAAGTACCAGC+AGG 0.592818 tig0023841:+70350 None:intergenic
GAAGGAGTAAAAGATAAGAT+GGG 0.595662 tig0023841:-71183 Msa1411800:exon
ACACTGCAATGGTAATGTTG+AGG 0.596965 tig0023841:-66588 Msa1411800:three_prime_UTR
GTGAATCAGTTTGTTGAACC+AGG 0.597573 tig0023841:-70575 Msa1411800:CDS
GCTCCTCGACTTATTTCTGA+AGG 0.598052 tig0023841:-69191 Msa1411800:intron
CTGCAGATGGTATCAAGGGA+TGG 0.598332 tig0023841:-68421 Msa1411800:CDS
GGATATGCCAGATGTGCTGT+TGG 0.602891 tig0023841:-66775 Msa1411800:three_prime_UTR
CTGCAGTCAATAAATTTACA+GGG 0.604165 tig0023841:+68438 None:intergenic
TGCACCCCAAGCGTTATCCT+AGG 0.608599 tig0023841:-70532 Msa1411800:intron
CTATATGCGTCCTACTAACA+CGG 0.608861 tig0023841:-69213 Msa1411800:CDS
TTTAACACTATGGACTCCCC+AGG 0.613220 tig0023841:-66546 Msa1411800:three_prime_UTR
GAAGCTTTGACACAAACTGA+AGG 0.614896 tig0023841:+66425 None:intergenic
TCACAAGCATGACGCCGAAG+TGG 0.619797 tig0023841:+66618 None:intergenic
GTGATCAAGGAACACTGCAA+TGG 0.620949 tig0023841:-66599 Msa1411800:three_prime_UTR
ACATGCTAGAAGAACAAATG+AGG 0.624695 tig0023841:+66329 None:intergenic
TGAACAACAATAGCTGGCCA+GGG 0.627097 tig0023841:+68359 None:intergenic
CAAAACCCAGCTCAACGTGA+AGG 0.628480 tig0023841:-71201 Msa1411800:five_prime_UTR
GTGGCGCCAATCTTGTTCCG+CGG 0.631844 tig0023841:-71150 Msa1411800:CDS
AAAATGAAGAGTGTGTACCT+GGG 0.632836 tig0023841:+66529 None:intergenic
TTTACCTAGGATAACGCTTG+GGG 0.635968 tig0023841:+70528 None:intergenic
ACAAATGAGGTGCAACAATG+AGG 0.638510 tig0023841:+66342 None:intergenic
GAGATCAAGGATCATAGCTG+TGG 0.639469 tig0023841:-70399 Msa1411800:CDS
ATCAAGGATCATAGCTGTGG+AGG 0.645787 tig0023841:-70396 Msa1411800:CDS
AAAAGATAAGATGGGTTCGG+TGG 0.652380 tig0023841:-71175 Msa1411800:exon
AAATGAAGAGTGTGTACCTG+GGG 0.659481 tig0023841:+66530 None:intergenic
ACTGATTCACATCAGTTACA+CGG 0.683807 tig0023841:+70588 None:intergenic
GGAGATTTGTGTGTAGGACA+TGG 0.688633 tig0023841:+70967 None:intergenic
ATAAATTGGATTGCACAACA+CGG 0.689490 tig0023841:-66923 Msa1411800:CDS
TTACCTTCAGAAATAAGTCG+AGG 0.695194 tig0023841:+69188 None:intergenic
ATTGTGTTGAAGATTGTGGG+TGG 0.705277 tig0023841:-68328 Msa1411800:CDS
GAACACTTAGTTGTTTCACG+AGG 0.728290 tig0023841:-70934 Msa1411800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAAATAAAATTTGAAT+AGG - tig0023841:68860-68879 Msa1411800:intron 10.0%
!!! AATGTATTCTTTTCTATATT+TGG - tig0023841:67567-67586 Msa1411800:intron 15.0%
!!! CACTTAATTATTTTTTTTTC+AGG - tig0023841:68163-68182 Msa1411800:intron 15.0%
!!! TCAAATATTATAAGTTGATT+AGG + tig0023841:68843-68862 None:intergenic 15.0%
!!! TTTAAAGTTTAACTTTACAA+TGG + tig0023841:68943-68962 None:intergenic 15.0%
!!! TGGTATTTTTAATGAAAAAT+AGG - tig0023841:69616-69635 Msa1411800:intron 15.0%
!! ATAATCAGATAAAAGAAATA+AGG + tig0023841:70330-70349 None:intergenic 15.0%
!!! GGCATTCTTAATATATTTTT+AGG - tig0023841:67027-67046 Msa1411800:CDS 20.0%
!!! ATTCTTTTCTATATTTGGTT+AGG - tig0023841:67572-67591 Msa1411800:intron 20.0%
!!! TATTTCATTTTAAGGTTCTT+GGG + tig0023841:68335-68354 None:intergenic 20.0%
!!! TACTTCACTATTTCATTTTA+AGG + tig0023841:68343-68362 None:intergenic 20.0%
!! TACAACTAACTTAACTATAA+TGG + tig0023841:68555-68574 None:intergenic 20.0%
!!! TTTAGTTTTATACTACATGA+AGG - tig0023841:68747-68766 Msa1411800:intron 20.0%
!! TTTAACCATATGATTTAGTT+AGG - tig0023841:68790-68809 Msa1411800:intron 20.0%
!! AAATTCAAACAGTACATAAA+AGG + tig0023841:69237-69256 None:intergenic 20.0%
!!! TGATTGATAATTCTTATCTT+CGG - tig0023841:69328-69347 Msa1411800:intron 20.0%
!!! AAATATAGCTCAATTTTAGA+TGG + tig0023841:69518-69537 None:intergenic 20.0%
!!! CATAATGTTTTGAAATTTGT+GGG + tig0023841:69751-69770 None:intergenic 20.0%
!!! TAAAAGGGTATTAGAAAAAA+GGG + tig0023841:69990-70009 None:intergenic 20.0%
!! AGCATTTACATGATATATAT+AGG - tig0023841:70150-70169 Msa1411800:intron 20.0%
!! ATATATAGGAGATACTATAT+AGG - tig0023841:70164-70183 Msa1411800:intron 20.0%
!! CTTATCATATCATGTAAATA+GGG + tig0023841:70231-70250 None:intergenic 20.0%
!! TATATTTACAACAGTTTCAA+AGG - tig0023841:70276-70295 Msa1411800:intron 20.0%
!! TTTAAGTCACTATATCAATA+GGG + tig0023841:70359-70378 None:intergenic 20.0%
!! ATTTAAGTCACTATATCAAT+AGG + tig0023841:70360-70379 None:intergenic 20.0%
!!! TCTTTATTGTATTTTCCAAA+TGG + tig0023841:70489-70508 None:intergenic 20.0%
!! CATTCATATATGAATTCTTT+GGG + tig0023841:71196-71215 None:intergenic 20.0%
!! ACATTCATATATGAATTCTT+TGG + tig0023841:71197-71216 None:intergenic 20.0%
! TTACAGATGTATTGTAAAAC+AGG + tig0023841:66562-66581 None:intergenic 25.0%
!! TAAAATTCTAGCTAGGAATT+TGG + tig0023841:66613-66632 None:intergenic 25.0%
! TGATAAAAATTGATTACGAG+TGG + tig0023841:66641-66660 None:intergenic 25.0%
!! CTTTATAGTTTTTCCTTTGA+GGG + tig0023841:66841-66860 None:intergenic 25.0%
! ACTAACATTCTAATTTACCT+AGG + tig0023841:66954-66973 None:intergenic 25.0%
! AGGTAAATTAGAATGTTAGT+TGG - tig0023841:66954-66973 Msa1411800:CDS 25.0%
! TTAGAATGTTAGTTGGAAAT+TGG - tig0023841:66961-66980 Msa1411800:CDS 25.0%
!! TTTTTCTGAGTTCATATAGT+GGG + tig0023841:67147-67166 None:intergenic 25.0%
! AAAGTTATTTATCCCTGTAT+AGG - tig0023841:67164-67183 Msa1411800:intron 25.0%
! TTCTATAAGAATCCTATACA+GGG + tig0023841:67179-67198 None:intergenic 25.0%
! ATTCTATAAGAATCCTATAC+AGG + tig0023841:67180-67199 None:intergenic 25.0%
! AAAACCATTATTGCTTGATA+AGG + tig0023841:67315-67334 None:intergenic 25.0%
! ATAGAAAAGAATACATTGCA+CGG + tig0023841:67564-67583 None:intergenic 25.0%
!! TTTTCTATATTTGGTTAGGT+AGG - tig0023841:67576-67595 Msa1411800:intron 25.0%
! TTTCTATATTTGGTTAGGTA+GGG - tig0023841:67577-67596 Msa1411800:intron 25.0%
! TAACAGTATAAGCTATGAAA+TGG + tig0023841:67850-67869 None:intergenic 25.0%
! TTAATGATTCCAATTGGTAA+AGG + tig0023841:68230-68249 None:intergenic 25.0%
!!! CTATTTCATTTTAAGGTTCT+TGG + tig0023841:68336-68355 None:intergenic 25.0%
! TGTATTATAAGCAACTTCTA+GGG - tig0023841:68388-68407 Msa1411800:CDS 25.0%
! TCAAGAAGTGGAATATTTAA+AGG + tig0023841:68661-68680 None:intergenic 25.0%
!!! CTTTTATTCTTTTCAAGAAG+TGG + tig0023841:68673-68692 None:intergenic 25.0%
! CACTTCTTGAAAAGAATAAA+AGG - tig0023841:68671-68690 Msa1411800:intron 25.0%
! AATATTGTGTTGAAGATTGT+GGG - tig0023841:69135-69154 Msa1411800:intron 25.0%
!! GATTGATAATTCTTATCTTC+GGG - tig0023841:69329-69348 Msa1411800:intron 25.0%
!!! AATAGAGTTTGTTAGTACAA+CGG + tig0023841:69480-69499 None:intergenic 25.0%
!! CATGAAATTAAAACCCATTT+TGG - tig0023841:69672-69691 Msa1411800:intron 25.0%
! ATTTGTGGGATAAATATTCT+CGG + tig0023841:69737-69756 None:intergenic 25.0%
!!! GCATAATGTTTTGAAATTTG+TGG + tig0023841:69752-69771 None:intergenic 25.0%
!!! GTAAAAGGGTATTAGAAAAA+AGG + tig0023841:69991-70010 None:intergenic 25.0%
! GCTTATCATATCATGTAAAT+AGG + tig0023841:70232-70251 None:intergenic 25.0%
! TACATAGTATCACCAATTAT+TGG + tig0023841:70423-70442 None:intergenic 25.0%
! CAATAGATAAGTTCAATTGA+AGG + tig0023841:70792-70811 None:intergenic 25.0%
! ATTGTATCTATACTTGATCT+TGG - tig0023841:70996-71015 Msa1411800:CDS 25.0%
! GTTTAGTTACATGAAAAATC+TGG + tig0023841:71174-71193 None:intergenic 25.0%
TGAAGGAGTAAAAGATAAGA+TGG - tig0023841:66282-66301 Msa1411800:three_prime_UTR 30.0%
GAAGGAGTAAAAGATAAGAT+GGG - tig0023841:66283-66302 Msa1411800:three_prime_UTR 30.0%
! AGTAAAAGATAAGATGGGTT+CGG - tig0023841:66288-66307 Msa1411800:three_prime_UTR 30.0%
! AGGTGTTTGTTAAGTGATAT+GGG + tig0023841:66385-66404 None:intergenic 30.0%
ACAACTAAGTGTTCAATTCT+TGG + tig0023841:66526-66545 None:intergenic 30.0%
ACAATACATCTGTAAAGCTT+TGG - tig0023841:66567-66586 Msa1411800:three_prime_UTR 30.0%
! GGAAGAATAAAATTCTAGCT+AGG + tig0023841:66620-66639 None:intergenic 30.0%
! CCTTTATAGTTTTTCCTTTG+AGG + tig0023841:66842-66861 None:intergenic 30.0%
CCTCAAAGGAAAAACTATAA+AGG - tig0023841:66839-66858 Msa1411800:CDS 30.0%
! AGCCATGATATGATAATGTT+TGG - tig0023841:67006-67025 Msa1411800:CDS 30.0%
TGCCAAACATTATCATATCA+TGG + tig0023841:67011-67030 None:intergenic 30.0%
! TTTTCTGAGTTCATATAGTG+GGG + tig0023841:67146-67165 None:intergenic 30.0%
! CTTTTTCTGAGTTCATATAG+TGG + tig0023841:67148-67167 None:intergenic 30.0%
ATCAATGTAGAAATTGCCAT+TGG + tig0023841:67274-67293 None:intergenic 30.0%
ATGGCAATTTCTACATTGAT+AGG - tig0023841:67274-67293 Msa1411800:intron 30.0%
TCTCAAGAATGATTGTTTGT+AGG - tig0023841:67365-67384 Msa1411800:intron 30.0%
ATACATTGCACGGAAAATTT+AGG + tig0023841:67554-67573 None:intergenic 30.0%
TTCTATATTTGGTTAGGTAG+GGG - tig0023841:67578-67597 Msa1411800:intron 30.0%
! TTTGATGGGTAGTTATCAAA+GGG + tig0023841:67668-67687 None:intergenic 30.0%
! ATTTGATGGGTAGTTATCAA+AGG + tig0023841:67669-67688 None:intergenic 30.0%
ATTTATGTGTAGCGTAGTAT+TGG - tig0023841:67768-67787 Msa1411800:intron 30.0%
TAGTGCTTAATGATTCCAAT+TGG + tig0023841:68236-68255 None:intergenic 30.0%
GTGTATTATAAGCAACTTCT+AGG - tig0023841:68387-68406 Msa1411800:CDS 30.0%
ATTGTCAGAATTCTGAGTAA+GGG + tig0023841:68519-68538 None:intergenic 30.0%
TTACTCAGAATTCTGACAAT+CGG - tig0023841:68519-68538 Msa1411800:intron 30.0%
ATATTTAAAGGAGAGAGGAT+AGG + tig0023841:68649-68668 None:intergenic 30.0%
TTGTTATAGTACAACAGGTT+TGG + tig0023841:68892-68911 None:intergenic 30.0%
TCATGTTGTTATAGTACAAC+AGG + tig0023841:68897-68916 None:intergenic 30.0%
ATAACAACATGATGTGTCAA+TGG - tig0023841:68905-68924 Msa1411800:intron 30.0%
TAACAACATGATGTGTCAAT+GGG - tig0023841:68906-68925 Msa1411800:intron 30.0%
CACAATATAAGACACTTATC+AGG + tig0023841:69001-69020 None:intergenic 30.0%
CTGATAAGTGTCTTATATTG+TGG - tig0023841:68999-69018 Msa1411800:intron 30.0%
CTGCAGTCAATAAATTTACA+GGG + tig0023841:69031-69050 None:intergenic 30.0%
TCTGCAGTCAATAAATTTAC+AGG + tig0023841:69032-69051 None:intergenic 30.0%
! GTAAATTTATTGACTGCAGA+TGG - tig0023841:69032-69051 Msa1411800:intron 30.0%
GAATATTGTGTTGAAGATTG+TGG - tig0023841:69134-69153 Msa1411800:intron 30.0%
TGTAAAATCAACCTTCTTAC+TGG - tig0023841:69185-69204 Msa1411800:intron 30.0%
ACTAACAAACTCTATTGTTC+TGG - tig0023841:69484-69503 Msa1411800:intron 30.0%
ATAAACTTCCAGAAAACGAA+TGG + tig0023841:69588-69607 None:intergenic 30.0%
CTGGAAGTTTATATCTTCTA+TGG - tig0023841:69596-69615 Msa1411800:intron 30.0%
AAGAAACGGCTGTAATAAAT+TGG - tig0023841:70529-70548 Msa1411800:intron 30.0%
ATAAATTGGATTGCACAACA+CGG - tig0023841:70543-70562 Msa1411800:CDS 30.0%
ATGAAATTTGACAAGCTTGA+AGG + tig0023841:70593-70612 None:intergenic 30.0%
TTCAAGCTTGTCAAATTTCA+TGG - tig0023841:70592-70611 Msa1411800:CDS 30.0%
TCAAGCTTGTCAAATTTCAT+GGG - tig0023841:70593-70612 Msa1411800:CDS 30.0%
TGAACTTATCTATTGTGTTG+CGG - tig0023841:70797-70816 Msa1411800:intron 30.0%
! CAGTAATCCTTTTAACACTA+TGG - tig0023841:70910-70929 Msa1411800:CDS 30.0%
TAGTTACATGAAAAATCTGG+TGG + tig0023841:71171-71190 None:intergenic 30.0%
! GAGGTGTTTGTTAAGTGATA+TGG + tig0023841:66386-66405 None:intergenic 35.0%
! AACCAAATTCATGCTTGTTG+AGG + tig0023841:66405-66424 None:intergenic 35.0%
TCAACAAGCATGAATTTGGT+TGG - tig0023841:66404-66423 Msa1411800:three_prime_UTR 35.0%
!! ATGAATTTGGTTGGTGTTGT+CGG - tig0023841:66413-66432 Msa1411800:three_prime_UTR 35.0%
ACTAAGTGTTCAATTCTTGG+CGG + tig0023841:66523-66542 None:intergenic 35.0%
GAATTTGGCACTTACAAATG+AGG + tig0023841:66598-66617 None:intergenic 35.0%
ATAAGACTTAGTGTGTGTGT+TGG + tig0023841:66672-66691 None:intergenic 35.0%
!! CACTAAGTCTTATTTCGTGA+AGG - tig0023841:66679-66698 Msa1411800:three_prime_UTR 35.0%
GTTGCAGATCTGATTCAATT+TGG - tig0023841:66705-66724 Msa1411800:three_prime_UTR 35.0%
!! GTATTTTGCTCTTGTTTCTC+CGG - tig0023841:66734-66753 Msa1411800:three_prime_UTR 35.0%
! ACTGATTCACATCAGTTACA+CGG + tig0023841:66881-66900 None:intergenic 35.0%
ATTTACCTAGGATAACGCTT+GGG + tig0023841:66942-66961 None:intergenic 35.0%
AATTTACCTAGGATAACGCT+TGG + tig0023841:66943-66962 None:intergenic 35.0%
!!! GTAGTTTTAGATAAACCTGC+TGG - tig0023841:67101-67120 Msa1411800:intron 35.0%
CCATTGGATACAAAAACTAC+AGG + tig0023841:67258-67277 None:intergenic 35.0%
! CCTGTAGTTTTTGTATCCAA+TGG - tig0023841:67255-67274 Msa1411800:intron 35.0%
ATTTCTACATTGATAGGCGT+TGG - tig0023841:67280-67299 Msa1411800:intron 35.0%
TTTCTACATTGATAGGCGTT+GGG - tig0023841:67281-67300 Msa1411800:intron 35.0%
AGGTCCTTATCAAGCAATAA+TGG - tig0023841:67308-67327 Msa1411800:intron 35.0%
ACAACTTTCTTCAATGTTGC+CGG + tig0023841:67610-67629 None:intergenic 35.0%
! TTGATGGGTAGTTATCAAAG+GGG + tig0023841:67667-67686 None:intergenic 35.0%
CGTGCAGTTATCAATTTGAT+GGG + tig0023841:67682-67701 None:intergenic 35.0%
! CCATCAAATTGATAACTGCA+CGG - tig0023841:67680-67699 Msa1411800:intron 35.0%
! CCGAATTTTGCAATGAAAGA+CGG + tig0023841:67815-67834 None:intergenic 35.0%
CCGTCTTTCATTGCAAAATT+CGG - tig0023841:67812-67831 Msa1411800:intron 35.0%
CGTCTTTCATTGCAAAATTC+GGG - tig0023841:67813-67832 Msa1411800:intron 35.0%
TATAAAATCACACTCGCACA+AGG - tig0023841:68023-68042 Msa1411800:intron 35.0%
GTTTGATCTTAGTCGTTAGA+CGG - tig0023841:68054-68073 Msa1411800:intron 35.0%
TTACCTTCAGAAATAAGTCG+AGG + tig0023841:68281-68300 None:intergenic 35.0%
! ATTATAAGCAACTTCTAGGG+AGG - tig0023841:68391-68410 Msa1411800:CDS 35.0%
GATTGTCAGAATTCTGAGTA+AGG + tig0023841:68520-68539 None:intergenic 35.0%
GTGGAATATTTAAAGGAGAG+AGG + tig0023841:68654-68673 None:intergenic 35.0%
ATGCGCCTAACTAAATCATA+TGG + tig0023841:68798-68817 None:intergenic 35.0%
TAGGTAGCTAATTTCCATCT+TGG + tig0023841:68824-68843 None:intergenic 35.0%
ATGGCATATTTGTCATCTTG+AGG - tig0023841:69064-69083 Msa1411800:intron 35.0%
TATTTGTCATCTTGAGGTCA+TGG - tig0023841:69070-69089 Msa1411800:intron 35.0%
TCATCTTGAACAACAATAGC+TGG + tig0023841:69116-69135 None:intergenic 35.0%
GACATTACACACACCAAAAT+GGG + tig0023841:69688-69707 None:intergenic 35.0%
AGACATTACACACACCAAAA+TGG + tig0023841:69689-69708 None:intergenic 35.0%
TGGTGTGTGTAATGTCTATT+CGG - tig0023841:69692-69711 Msa1411800:intron 35.0%
CAAAACATTATGCACTCTAG+TGG - tig0023841:69759-69778 Msa1411800:intron 35.0%
TCTATACCCCTCAACAAAAT+GGG - tig0023841:69805-69824 Msa1411800:intron 35.0%
!! GAGATGTTGATTTGTGTGTT+TGG + tig0023841:69835-69854 None:intergenic 35.0%
TAATGTTCCATCTCGTTCTT+GGG - tig0023841:69887-69906 Msa1411800:intron 35.0%
TTATAAGATAGCACGCTCTT+AGG + tig0023841:69922-69941 None:intergenic 35.0%
AAGCCTATCCAAAATCAATC+CGG + tig0023841:70065-70084 None:intergenic 35.0%
GGAGATACTATATAGGCTAA+AGG - tig0023841:70171-70190 Msa1411800:intron 35.0%
ATTGCAGAGATGATTAATCC+TGG - tig0023841:70456-70475 Msa1411800:intron 35.0%
AATCCTGGACTTAATCCATT+TGG - tig0023841:70471-70490 Msa1411800:intron 35.0%
!! TTTCCAAATGGATTAAGTCC+AGG + tig0023841:70477-70496 None:intergenic 35.0%
CAGTGAGAGTGAAAAAGAAA+CGG - tig0023841:70515-70534 Msa1411800:intron 35.0%
GATGAATACATTTACAGAGC+TGG - tig0023841:70621-70640 Msa1411800:CDS 35.0%
! AAAATGAAGAGTGTGTACCT+GGG + tig0023841:70940-70959 None:intergenic 35.0%
AGTAGCAGATTGCATAAAAG+AGG + tig0023841:70963-70982 None:intergenic 35.0%
ACTTGATCTTGGTCTATTAG+AGG - tig0023841:71007-71026 Msa1411800:CDS 35.0%
CAACAATGAGGTGAGAATTA+TGG + tig0023841:71115-71134 None:intergenic 35.0%
ACATGCTAGAAGAACAAATG+AGG + tig0023841:71140-71159 None:intergenic 35.0%
! AAAAGATAAGATGGGTTCGG+TGG - tig0023841:66291-66310 Msa1411800:three_prime_UTR 40.0%
CACCTCAACAAGCATGAATT+TGG - tig0023841:66400-66419 Msa1411800:three_prime_UTR 40.0%
GTAGCTTACTGTTTCACTGA+TGG + tig0023841:66458-66477 None:intergenic 40.0%
GAAGCAATCGATCATACTTC+GGG + tig0023841:66480-66499 None:intergenic 40.0%
GGAAGCAATCGATCATACTT+CGG + tig0023841:66481-66500 None:intergenic 40.0%
! GAACACTTAGTTGTTTCACG+AGG - tig0023841:66532-66551 Msa1411800:three_prime_UTR 40.0%
!!! TAGTGTGTGTGTTGGTTTTG+CGG + tig0023841:66664-66683 None:intergenic 40.0%
!! TCTAATTTGCTCTGCAGTAG+CGG + tig0023841:66772-66791 None:intergenic 40.0%
CAAAGAAGCAACTGAACCAT+TGG - tig0023841:66797-66816 Msa1411800:three_prime_UTR 40.0%
!!! GCTCTTTTTTGCAGAACCAA+TGG + tig0023841:66816-66835 None:intergenic 40.0%
!! GTGAATCAGTTTGTTGAACC+AGG - tig0023841:66891-66910 Msa1411800:CDS 40.0%
TTTACCTAGGATAACGCTTG+GGG + tig0023841:66941-66960 None:intergenic 40.0%
! TTAGGTGCTATGAGATTGAC+TGG - tig0023841:67045-67064 Msa1411800:CDS 40.0%
ATGAGATTGACTGGAGATCA+AGG - tig0023841:67054-67073 Msa1411800:CDS 40.0%
!! TTACATACAGAAGTACCAGC+AGG + tig0023841:67119-67138 None:intergenic 40.0%
! TTCTACATTGATAGGCGTTG+GGG - tig0023841:67282-67301 Msa1411800:intron 40.0%
CCGTGCAGTTATCAATTTGA+TGG + tig0023841:67683-67702 None:intergenic 40.0%
! CAAATTGATAACTGCACGGA+AGG - tig0023841:67684-67703 Msa1411800:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+GGG - tig0023841:67968-67987 Msa1411800:intron 40.0%
AAGAACACCCAAATTGACAC+CGG + tig0023841:67978-67997 None:intergenic 40.0%
CTATATGCGTCCTACTAACA+CGG - tig0023841:68253-68272 Msa1411800:intron 40.0%
CTGAAGGTAACTACGCAAAT+TGG - tig0023841:68291-68310 Msa1411800:CDS 40.0%
TCCATGGTTCATGGTATTAG+TGG - tig0023841:68420-68439 Msa1411800:CDS 40.0%
CAGAATTCTGAGTAAGGGAA+AGG + tig0023841:68514-68533 None:intergenic 40.0%
ATTGACTGCAGATGGTATCA+AGG - tig0023841:69040-69059 Msa1411800:intron 40.0%
TTGACTGCAGATGGTATCAA+GGG - tig0023841:69041-69060 Msa1411800:intron 40.0%
ATTGTGTTGAAGATTGTGGG+TGG - tig0023841:69138-69157 Msa1411800:intron 40.0%
AAACAGGTTACAGCTCATGA+AGG + tig0023841:69410-69429 None:intergenic 40.0%
ACTGATTGCTTCACTAGCAA+AGG + tig0023841:69441-69460 None:intergenic 40.0%
ACTTCCAGAAAACGAATGGA+GGG + tig0023841:69584-69603 None:intergenic 40.0%
AACTTCCAGAAAACGAATGG+AGG + tig0023841:69585-69604 None:intergenic 40.0%
GTCTATACCCCTCAACAAAA+TGG - tig0023841:69804-69823 Msa1411800:intron 40.0%
CTATACCCCTCAACAAAATG+GGG - tig0023841:69806-69825 Msa1411800:intron 40.0%
ATGAAGGAGAAGAGTCTATG+TGG + tig0023841:69865-69884 None:intergenic 40.0%
ACATAGACTCTTCTCCTTCA+TGG - tig0023841:69864-69883 Msa1411800:intron 40.0%
GAGATGGAACATTACCATGA+AGG + tig0023841:69881-69900 None:intergenic 40.0%
GTAATGTTCCATCTCGTTCT+TGG - tig0023841:69886-69905 Msa1411800:intron 40.0%
! TGAACATCAGAAGCATGTTC+CGG - tig0023841:70020-70039 Msa1411800:intron 40.0%
! TTGTTTTCGCTCTTTCAACG+CGG + tig0023841:70093-70112 None:intergenic 40.0%
AAAGAGCCTAGTGTTGCAAT+TGG - tig0023841:70567-70586 Msa1411800:CDS 40.0%
! CTGGAATTGTTCTTGAGTTG+AGG - tig0023841:70670-70689 Msa1411800:CDS 40.0%
ATTTAGTCCAACAGCACATC+TGG + tig0023841:70701-70720 None:intergenic 40.0%
! ACACTGCAATGGTAATGTTG+AGG - tig0023841:70878-70897 Msa1411800:intron 40.0%
! CACTGCAATGGTAATGTTGA+GGG - tig0023841:70879-70898 Msa1411800:intron 40.0%
! AAATGAAGAGTGTGTACCTG+GGG + tig0023841:70939-70958 None:intergenic 40.0%
! GAAAATGAAGAGTGTGTACC+TGG + tig0023841:70941-70960 None:intergenic 40.0%
! GAAGCTTTGACACAAACTGA+AGG + tig0023841:71044-71063 None:intergenic 40.0%
GCTTCGAGAAATCTGACAAA+TGG - tig0023841:71059-71078 Msa1411800:CDS 40.0%
ACAAATGAGGTGCAACAATG+AGG + tig0023841:71127-71146 None:intergenic 40.0%
TTACTCCTTCACGTTGAGCT+GGG + tig0023841:66273-66292 None:intergenic 45.0%
TTTACTCCTTCACGTTGAGC+TGG + tig0023841:66274-66293 None:intergenic 45.0%
GGAGATTTGTGTGTAGGACA+TGG + tig0023841:66502-66521 None:intergenic 45.0%
! CACTTAGTTGTTTCACGAGG+AGG - tig0023841:66535-66554 Msa1411800:three_prime_UTR 45.0%
!! CAAAAAAGAGCGTCCCTCAA+AGG - tig0023841:66825-66844 Msa1411800:CDS 45.0%
GAGATCAAGGATCATAGCTG+TGG - tig0023841:67067-67086 Msa1411800:CDS 45.0%
ATCAAGGATCATAGCTGTGG+AGG - tig0023841:67070-67089 Msa1411800:CDS 45.0%
TTGTAGGCTTGATGCTCAGT+AGG - tig0023841:67381-67400 Msa1411800:intron 45.0%
!! TGTGTAGCGTAGTATTGGCT+AGG - tig0023841:67773-67792 Msa1411800:intron 45.0%
! GATTCTCTCCGGTGTCAATT+TGG - tig0023841:67967-67986 Msa1411800:intron 45.0%
GCAGCTTCTCCTTTACCAAT+TGG - tig0023841:68218-68237 Msa1411800:intron 45.0%
!! GCTCCTCGACTTATTTCTGA+AGG - tig0023841:68275-68294 Msa1411800:CDS 45.0%
GCCACTAATACCATGAACCA+TGG + tig0023841:68424-68443 None:intergenic 45.0%
TCTTGCCTTGTACTGAGAGT+TGG - tig0023841:68470-68489 Msa1411800:CDS 45.0%
CTTGCCTTGTACTGAGAGTT+GGG - tig0023841:68471-68490 Msa1411800:CDS 45.0%
AAAGCCCAACTCTCAGTACA+AGG + tig0023841:68478-68497 None:intergenic 45.0%
TTGTACTGAGAGTTGGGCTT+TGG - tig0023841:68477-68496 Msa1411800:CDS 45.0%
GTAAGGGAAAGGAGAGGATT+GGG + tig0023841:68503-68522 None:intergenic 45.0%
AGTAAGGGAAAGGAGAGGAT+TGG + tig0023841:68504-68523 None:intergenic 45.0%
TTCTGAGTAAGGGAAAGGAG+AGG + tig0023841:68509-68528 None:intergenic 45.0%
AGAAGACAGAGTGACACGTT+TGG - tig0023841:68716-68735 Msa1411800:intron 45.0%
GAAGACAGAGTGACACGTTT+GGG - tig0023841:68717-68736 Msa1411800:intron 45.0%
TGCTCTGCAGAGTTGCTAAA+AGG - tig0023841:68972-68991 Msa1411800:intron 45.0%
TGGAATGCAGAAAGATTCCC+TGG - tig0023841:69090-69109 Msa1411800:intron 45.0%
TGAACAACAATAGCTGGCCA+GGG + tig0023841:69110-69129 None:intergenic 45.0%
TTGAACAACAATAGCTGGCC+AGG + tig0023841:69111-69130 None:intergenic 45.0%
GATGAGTTCGACCAGTAAGA+AGG + tig0023841:69199-69218 None:intergenic 45.0%
TCTTACTGGTCGAACTCATC+AGG - tig0023841:69199-69218 Msa1411800:CDS 45.0%
TTCCAGAAAACGAATGGAGG+GGG + tig0023841:69582-69601 None:intergenic 45.0%
CTTCCAGAAAACGAATGGAG+GGG + tig0023841:69583-69602 None:intergenic 45.0%
GGGTATAGACACAACACGTT+TGG + tig0023841:69794-69813 None:intergenic 45.0%
! TGGCTACCCCATTTTGTTGA+GGG + tig0023841:69815-69834 None:intergenic 45.0%
! TTGGCTACCCCATTTTGTTG+AGG + tig0023841:69816-69835 None:intergenic 45.0%
AACATGACCCAAGAACGAGA+TGG + tig0023841:69897-69916 None:intergenic 45.0%
CTCATTCTCTCCTTTGTCCT+TGG - tig0023841:69944-69963 Msa1411800:intron 45.0%
ATTCTCTCCTTTGTCCTTGG+CGG - tig0023841:69947-69966 Msa1411800:intron 45.0%
TAGAAAAAAGGGCCGAGTGA+TGG + tig0023841:69979-69998 None:intergenic 45.0%
TGCTTCTGATGTTCAGGCAT+GGG + tig0023841:70015-70034 None:intergenic 45.0%
ATGCTTCTGATGTTCAGGCA+TGG + tig0023841:70016-70035 None:intergenic 45.0%
GGAACATGCTTCTGATGTTC+AGG + tig0023841:70021-70040 None:intergenic 45.0%
! GAACATCAGAAGCATGTTCC+GGG - tig0023841:70021-70040 Msa1411800:intron 45.0%
!! TGGCCGGATTGATTTTGGAT+AGG - tig0023841:70059-70078 Msa1411800:intron 45.0%
!! AGCTCAATTTGCTGCTTGCA+AGG - tig0023841:70395-70414 Msa1411800:CDS 45.0%
! GCTTGCAAGGCACCAATAAT+TGG - tig0023841:70408-70427 Msa1411800:CDS 45.0%
ATCATCTCTGCAATTGCAGC+AGG + tig0023841:70450-70469 None:intergenic 45.0%
TGAAGGCCAATTGCAACACT+AGG + tig0023841:70576-70595 None:intergenic 45.0%
!! TTTACAGAGCTGGTTTGCCT+TGG - tig0023841:70631-70650 Msa1411800:CDS 45.0%
!! GCATTTTAACACCTCCACCA+AGG + tig0023841:70651-70670 None:intergenic 45.0%
!! TGGTGGAGGTGTTAAAATGC+TGG - tig0023841:70651-70670 Msa1411800:CDS 45.0%
GTGATCAAGGAACACTGCAA+TGG - tig0023841:70867-70886 Msa1411800:intron 45.0%
GGGGAGTCCATAGTGTTAAA+AGG + tig0023841:70920-70939 None:intergenic 45.0%
TTTAACACTATGGACTCCCC+AGG - tig0023841:70920-70939 Msa1411800:CDS 45.0%
CAAAACCCAGCTCAACGTGA+AGG - tig0023841:66265-66284 Msa1411800:three_prime_UTR 50.0%
!! AGATAAGATGGGTTCGGTGG+CGG - tig0023841:66294-66313 Msa1411800:three_prime_UTR 50.0%
CTTGGCGGAGATTTGTGTGT+AGG + tig0023841:66508-66527 None:intergenic 50.0%
ATTTGCTCTGCAGTAGCGGT+TGG + tig0023841:66768-66787 None:intergenic 50.0%
!! ATTGATAGGCGTTGGGGTCA+AGG - tig0023841:67288-67307 Msa1411800:intron 50.0%
TAGGCTTGATGCTCAGTAGG+TGG - tig0023841:67384-67403 Msa1411800:intron 50.0%
GGTTAGGTAGGGGAAACTAC+CGG - tig0023841:67588-67607 Msa1411800:intron 50.0%
AACCTTTGCAACTCGTGCCT+TGG - tig0023841:67632-67651 Msa1411800:intron 50.0%
ACCTTTGCAACTCGTGCCTT+GGG - tig0023841:67633-67652 Msa1411800:intron 50.0%
CAAAGGGGTTGTCAATCCCA+AGG + tig0023841:67652-67671 None:intergenic 50.0%
! TTGATAACTGCACGGAAGGC+TGG - tig0023841:67688-67707 Msa1411800:intron 50.0%
CTGTTCTAACCCACCTGAGT+TGG - tig0023841:67888-67907 Msa1411800:intron 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG - tig0023841:67915-67934 Msa1411800:intron 50.0%
GAATCGAACCTGAGACCTTG+CGG + tig0023841:67952-67971 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - tig0023841:67956-67975 Msa1411800:intron 50.0%
AGGAGCAACTCCATGGTTCA+TGG - tig0023841:68411-68430 Msa1411800:CDS 50.0%
GTTAGGCGCATTAGCCAAGA+TGG - tig0023841:68807-68826 Msa1411800:intron 50.0%
CTGCAGATGGTATCAAGGGA+TGG - tig0023841:69045-69064 Msa1411800:intron 50.0%
AGCAAAGGCAGCTGGTAAAC+AGG + tig0023841:69426-69445 None:intergenic 50.0%
TCCAGAAAACGAATGGAGGG+GGG + tig0023841:69581-69600 None:intergenic 50.0%
! GGCTACCCCATTTTGTTGAG+GGG + tig0023841:69814-69833 None:intergenic 50.0%
GTTCAGGCATGGGCGTAAAA+GGG + tig0023841:70005-70024 None:intergenic 50.0%
TGTTCAGGCATGGGCGTAAA+AGG + tig0023841:70006-70025 None:intergenic 50.0%
TGTTCCGGGTGGTCCAATAA+CGG - tig0023841:70035-70054 Msa1411800:intron 50.0%
GGATATGCCAGATGTGCTGT+TGG - tig0023841:70691-70710 Msa1411800:CDS 50.0%
TGCACTCGCAGGTAAGTTCC+TGG + tig0023841:66912-66931 None:intergenic 55.0%
TGCACCCCAAGCGTTATCCT+AGG - tig0023841:66934-66953 Msa1411800:CDS 55.0%
TCCCAAGGCACGAGTTGCAA+AGG + tig0023841:67637-67656 None:intergenic 55.0%
CAATACCACCAGGCCAACTC+AGG + tig0023841:67904-67923 None:intergenic 55.0%
! CTGAGTTGGCCTGGTGGTAT+TGG - tig0023841:67902-67921 Msa1411800:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - tig0023841:67907-67926 Msa1411800:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - tig0023841:67908-67927 Msa1411800:intron 55.0%
AGACCCAAGCCAATACCACC+AGG + tig0023841:67914-67933 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG - tig0023841:67914-67933 Msa1411800:intron 55.0%
AGTCGAGGAGCCGTGTTAGT+AGG + tig0023841:68266-68285 None:intergenic 55.0%
TCTAGGGAGGAGCAACTCCA+TGG - tig0023841:68404-68423 Msa1411800:CDS 55.0%
GCTTCACTAGCAAAGGCAGC+TGG + tig0023841:69434-69453 None:intergenic 55.0%
CCAGAAAACGAATGGAGGGG+GGG + tig0023841:69580-69599 None:intergenic 55.0%
!! AAAGGGCCGAGTGATGGACT+TGG + tig0023841:69973-69992 None:intergenic 55.0%
! CATCAGAAGCATGTTCCGGG+TGG - tig0023841:70024-70043 Msa1411800:intron 55.0%
GTTCCGGGTGGTCCAATAAC+GGG - tig0023841:70036-70055 Msa1411800:intron 55.0%
TCAATCCGGCCACCCGTTAT+TGG + tig0023841:70051-70070 None:intergenic 55.0%
!! ACGGGTGGCCGGATTGATTT+TGG - tig0023841:70054-70073 Msa1411800:intron 55.0%
!! ACAGAGCTGGTTTGCCTTGG+TGG - tig0023841:70634-70653 Msa1411800:CDS 55.0%
! GCGTGCGACATTTGCCACTT+CGG - tig0023841:70834-70853 Msa1411800:intron 55.0%
TCACAAGCATGACGCCGAAG+TGG + tig0023841:70851-70870 None:intergenic 55.0%
CGGCGTCATGCTTGTGATCA+AGG - tig0023841:70854-70873 Msa1411800:intron 55.0%
!! TAAGATGGGTTCGGTGGCGG+TGG - tig0023841:66297-66316 Msa1411800:three_prime_UTR 60.0%
GTGGCGCCAATCTTGTTCCG+CGG - tig0023841:66316-66335 Msa1411800:three_prime_UTR 60.0%
CAGCTGCCGCGGAACAAGAT+TGG + tig0023841:66325-66344 None:intergenic 60.0%
GTAGCGGTTGGAGGAGGTTC+CGG + tig0023841:66756-66775 None:intergenic 60.0%
TCTGCAGTAGCGGTTGGAGG+AGG + tig0023841:66762-66781 None:intergenic 60.0%
TGCTCTGCAGTAGCGGTTGG+AGG + tig0023841:66765-66784 None:intergenic 60.0%
! CTAACCCACCTGAGTTGGCC+TGG - tig0023841:67893-67912 Msa1411800:intron 60.0%
ACCACCAGGCCAACTCAGGT+GGG + tig0023841:67900-67919 None:intergenic 60.0%
TACCACCAGGCCAACTCAGG+TGG + tig0023841:67901-67920 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG + tig0023841:67949-67968 None:intergenic 60.0%
! CCCCCCCTCCATTCGTTTTC+TGG - tig0023841:69577-69596 Msa1411800:intron 60.0%
GACTTGGCCGCCAAGGACAA+AGG + tig0023841:69957-69976 None:intergenic 60.0%
!! AGTGATGGACTTGGCCGCCA+AGG + tig0023841:69964-69983 None:intergenic 60.0%
TGGCGGCCAAGTCCATCACT+CGG - tig0023841:69964-69983 Msa1411800:intron 60.0%
CCACCCGTTATTGGACCACC+CGG + tig0023841:70042-70061 None:intergenic 60.0%
!! GTGGTCCAATAACGGGTGGC+CGG - tig0023841:70043-70062 Msa1411800:intron 60.0%
!! GAGCTGGTTTGCCTTGGTGG+AGG - tig0023841:70637-70656 Msa1411800:CDS 60.0%
CTGTCGTAGCCTCGGCGTTC+CGG - tig0023841:66342-66361 Msa1411800:three_prime_UTR 65.0%
TAGCCTCGGCGTTCCGGATG+CGG - tig0023841:66348-66367 Msa1411800:three_prime_UTR 65.0%
! ACCCACCTGAGTTGGCCTGG+TGG - tig0023841:67896-67915 Msa1411800:intron 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG - tig0023841:67934-67953 Msa1411800:intron 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG - tig0023841:67941-67960 Msa1411800:intron 65.0%
! CCGGGTGGTCCAATAACGGG+TGG - tig0023841:70039-70058 Msa1411800:intron 65.0%
CGAGGCTACGACAGCTGCCG+CGG + tig0023841:66336-66355 None:intergenic 70.0%
CGCGGCAGCTGTCGTAGCCT+CGG - tig0023841:66334-66353 Msa1411800:three_prime_UTR 70.0%
CGTTCCGGATGCGGCGAGTG+CGG - tig0023841:66357-66376 Msa1411800:three_prime_UTR 70.0%
GGAACCGCACTCGCCGCATC+CGG + tig0023841:66364-66383 None:intergenic 70.0%
TGGGGTGCACGTGCACTCGC+AGG + tig0023841:66923-66942 None:intergenic 70.0%
TCGCCGCATCCGGAACGCCG+AGG + tig0023841:66354-66373 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0023841 gene 66251 71237 66251 ID=Msa1411800;Name=Msa1411800
tig0023841 mRNA 66251 71237 66251 ID=Msa1411800-mRNA-1;Parent=Msa1411800;Name=Msa1411800-mRNA-1;_AED=0.16;_eAED=0.16;_QI=50|0.6|0.83|1|1|1|6|572|421
tig0023841 exon 66251 67098 66251 ID=Msa1411800-mRNA-1:exon:20324;Parent=Msa1411800-mRNA-1
tig0023841 exon 68268 68506 68268 ID=Msa1411800-mRNA-1:exon:20323;Parent=Msa1411800-mRNA-1
tig0023841 exon 69192 69303 69192 ID=Msa1411800-mRNA-1:exon:20322;Parent=Msa1411800-mRNA-1
tig0023841 exon 70358 70439 70358 ID=Msa1411800-mRNA-1:exon:20321;Parent=Msa1411800-mRNA-1
tig0023841 exon 70533 70787 70533 ID=Msa1411800-mRNA-1:exon:20320;Parent=Msa1411800-mRNA-1
tig0023841 exon 70886 71237 70886 ID=Msa1411800-mRNA-1:exon:20319;Parent=Msa1411800-mRNA-1
tig0023841 five_prime_UTR 71188 71237 71188 ID=Msa1411800-mRNA-1:five_prime_utr;Parent=Msa1411800-mRNA-1
tig0023841 CDS 70886 71187 70886 ID=Msa1411800-mRNA-1:cds;Parent=Msa1411800-mRNA-1
tig0023841 CDS 70533 70787 70533 ID=Msa1411800-mRNA-1:cds;Parent=Msa1411800-mRNA-1
tig0023841 CDS 70358 70439 70358 ID=Msa1411800-mRNA-1:cds;Parent=Msa1411800-mRNA-1
tig0023841 CDS 69192 69303 69192 ID=Msa1411800-mRNA-1:cds;Parent=Msa1411800-mRNA-1
tig0023841 CDS 68268 68506 68268 ID=Msa1411800-mRNA-1:cds;Parent=Msa1411800-mRNA-1
tig0023841 CDS 66823 67098 66823 ID=Msa1411800-mRNA-1:cds;Parent=Msa1411800-mRNA-1
tig0023841 three_prime_UTR 66251 66822 66251 ID=Msa1411800-mRNA-1:three_prime_utr;Parent=Msa1411800-mRNA-1
Gene Sequence

>Msa1411800

ATGGGTTCGGTGGCGGTGGCGCCAATCTTGTTCCGCGGCAGCTGTCGTAGCCTCGGCGTTCCGGATGCGGCGAGTGCGGTTCCCATATCACTTAACAAACACCTCAACAAGCATGAATTTGGTTGGTGTTGTCGGAATTCAAATAACAGTGACGCCATCAGTGAAACAGTAAGCTACCCGAAGTATGATCGATTGCTTCCATGTCCTACACACAAATCTCCGCCAAGAATTGAACACTTAGTTGTTTCACGAGGAGGACCTGTTTTACAATACATCTGTAAAGCTTTGGATCTTCCTCATTTGTTTGTTGCAGATCTGATTCAATTTGGAGCTGTGTATTTTGCTCTTGTTTCTCCGGAACCTCCTCCAACCGCTACTGCAGAGCAAATTAGAATTTTCAAAGAAGCAACTGAACCATTGGTTCTGCAAAAAAGAGCGTCCCTCAAAGGAAAAACTATAAAGGAAGCTCAAAAAACTTTCCGTGTAACTGATGTGAATCAGTTTGTTGAACCAGGAACTTACCTGCGAGTGCACGTGCACCCCAAGCGTTATCCTAGGTGCTATGAGATTGACTGGAGATCAAGGATCATAGCTGTGGAGGAATCGTATGTAGTTTTAGATAAACCTGCTGGTACTTCTGAGAAAAAAGTGAAGAAGATTTATCTTGCTCTCGCAGCTTCTCCTTTACCAATTGGAATCATTAAGCACTATATGCGTCCTACTAACACGGCTCCTCGACTTATTTCTGAAGAGTTGCTAAAAGGCTTCCTGATAAGTGTCTTATATTGTGGATTCAACCCTGTAAATTTATTGACTGCAGATGGTATCAAGGGATGGCATATTTGTCATCTTGAGGTCATGGAATGCAGAAAGATTCCCTGGCCAGCTATTGTTGTTCAAGATGAATATTGTGTTGAAGATTGTGGGTGGCTCTCTCAAGATTACGCGTACGAGTGTAAAATCAACCTTCTTACTGGTCGAACTCATCAGATTCGAGCTCAATTTGCTGCTTGCAAGGCACCAATAATTGGTGATACTATGTATATGCCTGCTGCAATTGCAGAGATGATTAATCCTGGACTTAATCCATTTGGAAAATACAATAAAGATTTCAGCAGTGAGAGTGAAAAAGAAACGGCTGTAATAAATTGGATTGCACAACACGGAAAAGAGCCTAGTGTTGCAATTGGCCTTCAAGCTTGTCAAATTTCATGGGACGATGATGAATACATTTACAGAGCTGGTTTGCCTTGGTGGAGGTGTTAA
Protein sequence

>Msa1411800

MGSVAVAPILFRGSCRSLGVPDAASAVPISLNKHLNKHEFGWCCRNSNNSDAISETVSYPKYDRLLPCPTHKSPPRIEHLVVSRGGPVLQYICKALDLPHLFVADLIQFGAVYFALVSPEPPPTATAEQIRIFKEATEPLVLQKRASLKGKTIKEAQKTFRVTDVNQFVEPGTYLRVHVHPKRYPRCYEIDWRSRIIAVEESYVVLDKPAGTSEKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEELLKGFLISVLYCGFNPVNLLTADGIKGWHICHLEVMECRKIPWPAIVVQDEYCVEDCGWLSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFSSESEKETAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWWRC*