Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437870 | XP_003625505.1 | 88.789 | 446 | 18 | 2 | 1 | 414 | 1 | 446 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437870 | sp|Q94AA1|UN933_ARATH | 62.470 | 413 | 124 | 5 | 7 | 390 | 4 | 414 | 1.14e-171 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437870 | G7L0K8 | 88.789 | 446 | 18 | 2 | 1 | 414 | 1 | 446 | 0.0 | 770 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1385820 | Msa1437870 | 0.885862 | 5.639132e-72 | -8.615850e-47 |
| Msa1409270 | Msa1437870 | 0.879835 | 9.005370e-70 | -8.615850e-47 |
| Msa1123840 | Msa1437870 | 0.897583 | 1.220930e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437870 | MtrunA17_Chr7g0262981 | 88.789 | 446 | 18 | 2 | 1 | 414 | 1 | 446 | 0.0 | 770 |
| Msa1437870 | MtrunA17_Chr7g0262971 | 83.108 | 444 | 46 | 1 | 1 | 415 | 1 | 444 | 0.0 | 722 |
| Msa1437870 | MtrunA17_Chr7g0262951 | 71.818 | 440 | 88 | 3 | 10 | 413 | 2 | 441 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437870 | AT3G09470.2 | 62.791 | 430 | 129 | 5 | 7 | 407 | 4 | 431 | 0.0 | 513 |
Find 99 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTGTATTGCAGTTTAT+TGG | 0.159343 | tig0028373:+6719 | Msa1437870:intron |
| TTACTCATCTTTCTAGCTTA+TGG | 0.165736 | tig0028373:+4741 | Msa1437870:CDS |
| TACATTATATATACTTATTT+TGG | 0.171202 | tig0028373:+8144 | Msa1437870:CDS |
| TCTTACTTCTGCTAGATTTC+AGG | 0.182675 | tig0028373:+8000 | Msa1437870:CDS |
| GCTTTGATGGTTGGAACTTC+TGG | 0.243991 | tig0028373:+5405 | Msa1437870:CDS |
| ACTCCAGCAATTGGTGTTTC+TGG | 0.248058 | tig0028373:+7696 | Msa1437870:CDS |
| ATTACATCAATAGTTTCTTT+TGG | 0.283502 | tig0028373:+7951 | Msa1437870:CDS |
| GGTATTGCAATGGCAGTATA+TGG | 0.286764 | tig0028373:+7723 | Msa1437870:CDS |
| GTTCCGGCTTCTGTGTATCT+TGG | 0.288738 | tig0028373:+6363 | Msa1437870:CDS |
| TCCAACCATCAAAGCATTCT+TGG | 0.289790 | tig0028373:-5397 | Msa1437870:intergenic |
| AATCTTGTCTTGTAAAGAAT+TGG | 0.293097 | tig0028373:-4451 | Msa1437870:intergenic |
| TTCCACGAAGGTGCAGTAAT+TGG | 0.303941 | tig0028373:+6551 | Msa1437870:CDS |
| CGGATCCAAGAATGCTTTGA+TGG | 0.318222 | tig0028373:+5392 | Msa1437870:CDS |
| GTGACTTCAACGGAGAGTTC+TGG | 0.318467 | tig0028373:+6573 | Msa1437870:CDS |
| TAATGTGCTTTCTGCATAAA+CGG | 0.336205 | tig0028373:+7366 | Msa1437870:CDS |
| TGGTTGGAACTTCTGGTTAT+TGG | 0.338454 | tig0028373:+5412 | Msa1437870:CDS |
| TCTTTGGTGGTGCGGATTCT+CGG | 0.346413 | tig0028373:+5372 | Msa1437870:CDS |
| CGCACTTGCAGTTACCAATT+GGG | 0.364795 | tig0028373:-5459 | Msa1437870:intergenic |
| ATGCAGGTATACATTGGTTC+CGG | 0.390937 | tig0028373:+6347 | Msa1437870:intron |
| AATGTGCTTTCTGCATAAAC+GGG | 0.395329 | tig0028373:+7367 | Msa1437870:CDS |
| TGACTTCAACGGAGAGTTCT+GGG | 0.396002 | tig0028373:+6574 | Msa1437870:CDS |
| CTGAAGGAAATGTGCCGTAT+AGG | 0.399751 | tig0028373:-8778 | Msa1437870:intergenic |
| CTGCAAACTTGAAGCCCAAT+TGG | 0.400523 | tig0028373:+5445 | Msa1437870:CDS |
| AGTAGAGTTGGAAAATTAGT+TGG | 0.400722 | tig0028373:-4545 | Msa1437870:intergenic |
| TTCCGGCTTCTGTGTATCTT+GGG | 0.404081 | tig0028373:+6364 | Msa1437870:CDS |
| GTCGCTGGTCGTCTCACCTT+TGG | 0.407085 | tig0028373:+7918 | Msa1437870:CDS |
| ACGCAGCTCAATGCTTTACT+AGG | 0.408249 | tig0028373:+8202 | Msa1437870:CDS |
| TTAAATATGCCAGTGTTCTC+TGG | 0.409023 | tig0028373:+7896 | Msa1437870:intron |
| AAAAGAAACTATTGATGTAA+TGG | 0.422422 | tig0028373:-7949 | Msa1437870:intergenic |
| GCTTTATTGGGCATTGGTGA+TGG | 0.429288 | tig0028373:+8169 | Msa1437870:CDS |
| AGCATATCCAGTGGATTTGT+TGG | 0.430052 | tig0028373:+8121 | Msa1437870:intron |
| CAAGGGAGGATACAAGCATT+TGG | 0.433232 | tig0028373:+7400 | Msa1437870:CDS |
| TTCTATATTATGGGTTGGAC+AGG | 0.438750 | tig0028373:+6395 | Msa1437870:CDS |
| GTAGAGTTGGAAAATTAGTT+GGG | 0.440252 | tig0028373:-4544 | Msa1437870:intergenic |
| GCAATTGGTGTTTCTGGTGT+TGG | 0.445627 | tig0028373:+7702 | Msa1437870:CDS |
| TCCAAGAATGCTTTGATGGT+TGG | 0.450947 | tig0028373:+5396 | Msa1437870:CDS |
| TGCTGGAGTTACAACATACT+TGG | 0.451971 | tig0028373:-7682 | Msa1437870:intergenic |
| TTATGGTTGGCTCTCAAGGT+GGG | 0.452741 | tig0028373:+8687 | Msa1437870:CDS |
| AAGCATTTGGATGCCGGCGC+TGG | 0.452753 | tig0028373:+7413 | Msa1437870:CDS |
| GTCTACAACACGCATTTGTA+TGG | 0.454305 | tig0028373:+7531 | Msa1437870:CDS |
| TTCGTTCCAAGCAGTTATCA+TGG | 0.455355 | tig0028373:+8626 | Msa1437870:CDS |
| TTGGCTGCTTTATTGGGCAT+TGG | 0.459579 | tig0028373:+8163 | Msa1437870:CDS |
| ACACCAGAAACACCAATTGC+TGG | 0.459964 | tig0028373:-7699 | Msa1437870:intergenic |
| GTATTGCAATGGCAGTATAT+GGG | 0.463221 | tig0028373:+7724 | Msa1437870:CDS |
| TGCTCTACTCAGTGATGGGC+AGG | 0.464947 | tig0028373:+6757 | Msa1437870:CDS |
| GATTTGGGTACGACTTCGCT+TGG | 0.480382 | tig0028373:+5309 | Msa1437870:CDS |
| TTCTGGTTATTGGTTATACC+TGG | 0.481480 | tig0028373:+5422 | Msa1437870:CDS |
| TATGTTGTAACTCCAGCAAT+TGG | 0.485973 | tig0028373:+7687 | Msa1437870:CDS |
| GCTCAAAATATGAACATCTC+TGG | 0.487925 | tig0028373:-4709 | Msa1437870:intergenic |
| TGTGCTTCTATATTATGGGT+TGG | 0.496046 | tig0028373:+6390 | Msa1437870:CDS |
| CACCAATTACTGCACCTTCG+TGG | 0.497583 | tig0028373:-6553 | Msa1437870:intergenic |
| AAATATGAACATCTCTGGTA+TGG | 0.497989 | tig0028373:-4704 | Msa1437870:intergenic |
| TATGGTTGGCTCTCAAGGTG+GGG | 0.500881 | tig0028373:+8688 | Msa1437870:CDS |
| CACCAAAGGTCATAACGAAA+AGG | 0.505513 | tig0028373:-7337 | Msa1437870:intergenic |
| ACATTTGCTCTACTCAGTGA+TGG | 0.507367 | tig0028373:+6752 | Msa1437870:CDS |
| ATTTGGGTACGACTTCGCTT+GGG | 0.510297 | tig0028373:+5310 | Msa1437870:CDS |
| CTGCTTGGAACGAAATGTAC+GGG | 0.512143 | tig0028373:-8617 | Msa1437870:intergenic |
| TGTACACTTCATTCAACTGA+AGG | 0.514226 | tig0028373:-8794 | Msa1437870:intergenic |
| GGATACAAGCATTTGGATGC+CGG | 0.516171 | tig0028373:+7407 | Msa1437870:CDS |
| GGGTGTATACACACTTCATC+AGG | 0.518181 | tig0028373:+6595 | Msa1437870:CDS |
| AACCCAAGATACACAGAAGC+CGG | 0.518246 | tig0028373:-6366 | Msa1437870:intergenic |
| AAACAATAAAGTTGTGCCAT+TGG | 0.524098 | tig0028373:-7306 | Msa1437870:intergenic |
| TGCCAGTGTTCTCTGGTCGC+TGG | 0.524130 | tig0028373:+7903 | Msa1437870:intron |
| TTTATGGTTGGCTCTCAAGG+TGG | 0.530407 | tig0028373:+8686 | Msa1437870:CDS |
| TGGGCTTCAAGTTTGCAGCC+AGG | 0.531249 | tig0028373:-5440 | Msa1437870:intergenic |
| TAATGTACCAACAAATCCAC+TGG | 0.537543 | tig0028373:-8128 | Msa1437870:intergenic |
| TTCTGGTGTTGGTATTGCAA+TGG | 0.544148 | tig0028373:+7713 | Msa1437870:CDS |
| AGACATACATGGAGTAGAGT+TGG | 0.544896 | tig0028373:-4557 | Msa1437870:intergenic |
| GCACATTAATATTGCACCAA+AGG | 0.548234 | tig0028373:-7351 | Msa1437870:intergenic |
| GCAACATTAAATTCACTCAC+TGG | 0.560043 | tig0028373:-8730 | Msa1437870:intergenic |
| ACATGACCATGATAACTGCT+TGG | 0.560534 | tig0028373:-8632 | Msa1437870:intergenic |
| ACTGCTTGGAACGAAATGTA+CGG | 0.561713 | tig0028373:-8618 | Msa1437870:intergenic |
| GGACTTTCATTCACCAGCGC+CGG | 0.562462 | tig0028373:-7426 | Msa1437870:intergenic |
| TATTGCAATGGCAGTATATG+GGG | 0.568621 | tig0028373:+7725 | Msa1437870:CDS |
| CATTTGCTCTACTCAGTGAT+GGG | 0.570849 | tig0028373:+6753 | Msa1437870:CDS |
| GAACTGAGAACTTGAACCAA+TGG | 0.576895 | tig0028373:+4605 | Msa1437870:exon |
| GCAGTAATTGGTGACTTCAA+CGG | 0.585247 | tig0028373:+6563 | Msa1437870:CDS |
| ATACCCCTTATAGCATACTC+AGG | 0.585771 | tig0028373:+7509 | Msa1437870:intron |
| ACTGTTATGCAGGTATACAT+TGG | 0.590098 | tig0028373:+6341 | Msa1437870:intron |
| TGAATAATCACAGAAGCCAT+TGG | 0.592595 | tig0028373:-4621 | Msa1437870:intergenic |
| AATTCACTCACTGGTGGAGA+GGG | 0.593392 | tig0028373:-8721 | Msa1437870:intergenic |
| ATCAGTGATTCAACAACTAA+CGG | 0.599267 | tig0028373:-4660 | Msa1437870:intergenic |
| TGTATCTATGTAGACATACA+TGG | 0.600352 | tig0028373:-4568 | Msa1437870:intergenic |
| TATAGCATGACTGCGTGCAG+TGG | 0.601352 | tig0028373:-6519 | Msa1437870:intergenic |
| CTGTAGGAGGGAAGTACCAA+TGG | 0.601368 | tig0028373:+7290 | Msa1437870:intron |
| AAATTCACTCACTGGTGGAG+AGG | 0.602947 | tig0028373:-8722 | Msa1437870:intergenic |
| CGGGGTGATAATAGCAAGGG+AGG | 0.610044 | tig0028373:+7386 | Msa1437870:CDS |
| TAAACGGGGTGATAATAGCA+AGG | 0.610785 | tig0028373:+7382 | Msa1437870:CDS |
| TTCTGATGCAGCATATCCAG+TGG | 0.611801 | tig0028373:+8112 | Msa1437870:intron |
| ATGAAGCTAAAGAAATATTG+TGG | 0.614353 | tig0028373:-4489 | Msa1437870:intergenic |
| GCAGAGCGCTACAATTGCTA+CGG | 0.636383 | tig0028373:+8581 | Msa1437870:CDS |
| ACATTAAATTCACTCACTGG+TGG | 0.641025 | tig0028373:-8727 | Msa1437870:intergenic |
| GACTTCAACGGAGAGTTCTG+GGG | 0.657674 | tig0028373:+6575 | Msa1437870:CDS |
| AAACGGGGTGATAATAGCAA+GGG | 0.682006 | tig0028373:+7383 | Msa1437870:CDS |
| AATGCTATTTAAACATGACA+TGG | 0.693354 | tig0028373:+8225 | Msa1437870:CDS |
| TGCTTGGAACGAAATGTACG+GGG | 0.696058 | tig0028373:-8616 | Msa1437870:intergenic |
| ATAGATAACAATTTCCACGA+AGG | 0.705993 | tig0028373:+6539 | Msa1437870:CDS |
| ATGTGCTTTCTGCATAAACG+GGG | 0.713089 | tig0028373:+7368 | Msa1437870:CDS |
| TGTAATGGATGTGAGACCAA+AGG | 0.727481 | tig0028373:-7934 | Msa1437860:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTTATTATTATTGTATT+TGG | + | tig0028373:4814-4833 | Msa1437870:intron | 10.0% |
| !!! | TTGATTTTAAATAAGATTAT+AGG | + | tig0028373:5736-5755 | Msa1437870:intron | 10.0% |
| !!! | TGATTTTAAATAAGATTATA+GGG | + | tig0028373:5737-5756 | Msa1437870:intron | 10.0% |
| !!! | TTTTTTTTTTTAAATAAGAC+TGG | + | tig0028373:6632-6651 | Msa1437870:intron | 10.0% |
| !!! | AGAATATTTTATATATTCTT+CGG | + | tig0028373:7246-7265 | Msa1437870:intron | 10.0% |
| !!! | TACATTATATATACTTATTT+TGG | + | tig0028373:8144-8163 | Msa1437870:CDS | 10.0% |
| !!! | ATTTGAAACAAATTTACTAA+TGG | - | tig0028373:4863-4882 | Msa1437870:intergenic | 15.0% |
| !!! | ATCAAATTATTTAAGTTGTT+TGG | - | tig0028373:5234-5253 | Msa1437870:intergenic | 15.0% |
| !! | AAATAATTTGATTGTGAATT+TGG | + | tig0028373:5242-5261 | Msa1437870:intron | 15.0% |
| !! | TATAGTAATTAATTATGTTC+TGG | + | tig0028373:5918-5937 | Msa1437870:intron | 15.0% |
| !! | ATAGTAATTAATTATGTTCT+GGG | + | tig0028373:5919-5938 | Msa1437870:intron | 15.0% |
| !!! | CATAAATCATATTTTGATTT+CGG | + | tig0028373:5945-5964 | Msa1437870:intron | 15.0% |
| !!! | TTTTTTGTTCTTATAGTATT+GGG | + | tig0028373:5978-5997 | Msa1437870:intron | 15.0% |
| !!! | TTTTTTCTTTAATAATCAAG+TGG | + | tig0028373:6824-6843 | Msa1437870:intron | 15.0% |
| !!! | TGTACAAACAAATTATTTTA+AGG | + | tig0028373:7145-7164 | Msa1437870:intron | 15.0% |
| !! | ATAATGATATAAGAGATATT+TGG | - | tig0028373:8504-8523 | Msa1437870:intergenic | 15.0% |
| !! | ATTATTGTATTTGGATTATG+AGG | + | tig0028373:4823-4842 | Msa1437870:intron | 20.0% |
| !!! | ATTGTATGTTTTGAATTTTC+AGG | + | tig0028373:5281-5300 | Msa1437870:intron | 20.0% |
| !! | TGTATCTATCTTATTATTCA+AGG | - | tig0028373:5590-5609 | Msa1437870:intergenic | 20.0% |
| !!! | TTCAATCAAAATGTTGATTA+TGG | - | tig0028373:5786-5805 | Msa1437870:intergenic | 20.0% |
| !!! | GTTTTTTGTTCTTATAGTAT+TGG | + | tig0028373:5977-5996 | Msa1437870:intron | 20.0% |
| !!! | TTTTTGTTCTTATAGTATTG+GGG | + | tig0028373:5979-5998 | Msa1437870:intron | 20.0% |
| !!! | TGAATAATACTAGCTTATTA+TGG | + | tig0028373:6294-6313 | Msa1437870:intron | 20.0% |
| !! | ATTAAAACAACTTGAATACT+TGG | - | tig0028373:7042-7061 | Msa1437870:intergenic | 20.0% |
| !! | AAAAGAAACTATTGATGTAA+TGG | - | tig0028373:7952-7971 | Msa1437870:intergenic | 20.0% |
| !!! | ATTACATCAATAGTTTCTTT+TGG | + | tig0028373:7951-7970 | Msa1437870:CDS | 20.0% |
| !! | CAAAATGAAATTACATTCTA+AGG | - | tig0028373:8074-8093 | Msa1437870:intergenic | 20.0% |
| !!! | CATTTTGCTTATATTTTCAT+TGG | + | tig0028373:8087-8106 | Msa1437870:intron | 20.0% |
| !! | TATATTTCAGCGAAATAAAA+GGG | - | tig0028373:8268-8287 | Msa1437870:intergenic | 20.0% |
| !! | GTCAAATTTATAATACTTTG+CGG | + | tig0028373:8524-8543 | Msa1437870:intron | 20.0% |
| ! | AATCTTGTCTTGTAAAGAAT+TGG | - | tig0028373:4454-4473 | Msa0950210:intergenic | 25.0% |
| ! | ATGAAGCTAAAGAAATATTG+TGG | - | tig0028373:4492-4511 | Msa0950210:intergenic | 25.0% |
| ! | AAAGATTGCAACATAGAAAT+TGG | - | tig0028373:4939-4958 | Msa1437870:intergenic | 25.0% |
| ! | GAGTTCAAGCTTATTTAATA+TGG | - | tig0028373:4976-4995 | Msa1437870:intergenic | 25.0% |
| ! | ATGTATAAATATGTATGGAC+AGG | - | tig0028373:5169-5188 | Msa1437870:intergenic | 25.0% |
| ! | GTTGGATGTATAAATATGTA+TGG | - | tig0028373:5174-5193 | Msa1437870:intergenic | 25.0% |
| ! | TAATTTGATTGTGAATTTGG+AGG | + | tig0028373:5245-5264 | Msa1437870:intron | 25.0% |
| !!! | TTTTTCTGTTTTTGCTTCTT+TGG | + | tig0028373:5356-5375 | Msa1437870:CDS | 25.0% |
| ! | TATGAACTTATACTTTGGTA+GGG | - | tig0028373:6013-6032 | Msa1437870:intergenic | 25.0% |
| ! | ATATGAACTTATACTTTGGT+AGG | - | tig0028373:6014-6033 | Msa1437870:intergenic | 25.0% |
| ! | AAGCATATGAACTTATACTT+TGG | - | tig0028373:6018-6037 | Msa1437870:intergenic | 25.0% |
| ! | ATTATCCTTATATTCCATGA+AGG | + | tig0028373:6078-6097 | Msa1437870:intron | 25.0% |
| ! | TCTTAACAAGTTAAACTACA+GGG | - | tig0028373:6110-6129 | Msa1437870:intergenic | 25.0% |
| ! | ATCTTAACAAGTTAAACTAC+AGG | - | tig0028373:6111-6130 | Msa1437870:intergenic | 25.0% |
| !!! | ATTTAGGTTTTGTTTTCTCT+AGG | - | tig0028373:6140-6159 | Msa1437870:intergenic | 25.0% |
| !!! | TATATTGTTGTCGTTGATTT+AGG | - | tig0028373:6156-6175 | Msa1437870:intergenic | 25.0% |
| !! | GTTTTGTGCTTCTATATTAT+GGG | + | tig0028373:6386-6405 | Msa1437870:CDS | 25.0% |
| !! | GTTTAAAGCTCAACTAAATT+TGG | - | tig0028373:6955-6974 | Msa1437870:intergenic | 25.0% |
| ! | AAGGAAATGAAAATATGAGT+TGG | + | tig0028373:7164-7183 | Msa1437870:intron | 25.0% |
| ! | AGGAAATGAAAATATGAGTT+GGG | + | tig0028373:7165-7184 | Msa1437870:intron | 25.0% |
| ! | GATGAGAATTCATTGTTAAA+GGG | - | tig0028373:7202-7221 | Msa1437870:intergenic | 25.0% |
| ! | AGATGAGAATTCATTGTTAA+AGG | - | tig0028373:7203-7222 | Msa1437870:intergenic | 25.0% |
| ! | CATTTGTATGGTAATTTCAT+AGG | + | tig0028373:7543-7562 | Msa1437870:intron | 25.0% |
| !! | AATGCTATTTAAACATGACA+TGG | + | tig0028373:8225-8244 | Msa1437870:CDS | 25.0% |
| ! | GTATATTTCAGCGAAATAAA+AGG | - | tig0028373:8269-8288 | Msa1437870:intergenic | 25.0% |
| ! | AAAAAAGTAATAGAGAAGCA+AGG | - | tig0028373:8336-8355 | Msa1437870:intergenic | 25.0% |
| ! | CAATACTAGAACAATAATGT+GGG | - | tig0028373:8437-8456 | Msa1437870:intergenic | 25.0% |
| !! | TATTTTGCTGAAGAATATTC+AGG | + | tig0028373:8859-8878 | Msa1437870:three_prime_UTR | 25.0% |
| GTAGAGTTGGAAAATTAGTT+GGG | - | tig0028373:4547-4566 | Msa0950210:intergenic | 30.0% | |
| AGTAGAGTTGGAAAATTAGT+TGG | - | tig0028373:4548-4567 | Msa0950210:intergenic | 30.0% | |
| TGTATCTATGTAGACATACA+TGG | - | tig0028373:4571-4590 | Msa0950210:intergenic | 30.0% | |
| ATCAGTGATTCAACAACTAA+CGG | - | tig0028373:4663-4682 | Msa1437870:intergenic | 30.0% | |
| AAATATGAACATCTCTGGTA+TGG | - | tig0028373:4707-4726 | Msa1437870:intergenic | 30.0% | |
| !! | TTACTCATCTTTCTAGCTTA+TGG | + | tig0028373:4741-4760 | Msa1437870:CDS | 30.0% |
| TTGTTTCAAATGTCTGTCAA+AGG | + | tig0028373:4872-4891 | Msa1437870:intron | 30.0% | |
| CATCACAAAAGTTAGTTCAA+AGG | + | tig0028373:4995-5014 | Msa1437870:intron | 30.0% | |
| AAGTTCAGTTAACATGATAC+TGG | - | tig0028373:5140-5159 | Msa1437870:intergenic | 30.0% | |
| !! | GTATGTTTTGAATTTTCAGG+AGG | + | tig0028373:5284-5303 | Msa1437870:intron | 30.0% |
| AATGATTACTGATGCAATTG+TGG | + | tig0028373:5609-5628 | Msa1437870:intron | 30.0% | |
| ! | TCAGCATTTCTGAGTTATTT+TGG | + | tig0028373:5699-5718 | Msa1437870:intron | 30.0% |
| ! | AAGATTATAGGGCACTTATT+TGG | + | tig0028373:5748-5767 | Msa1437870:intron | 30.0% |
| !!! | TCATATTTTGATTTCGGCTT+AGG | + | tig0028373:5951-5970 | Msa1437870:intron | 30.0% |
| !!! | CATATTTTGATTTCGGCTTA+GGG | + | tig0028373:5952-5971 | Msa1437870:intron | 30.0% |
| CTTAACAAGTTAAACTACAG+GGG | - | tig0028373:6109-6128 | Msa1437870:intergenic | 30.0% | |
| ! | CATCAAATGAAGAGTTTTTG+AGG | - | tig0028373:6182-6201 | Msa1437870:intergenic | 30.0% |
| CTCAAAAACTCTTCATTTGA+TGG | + | tig0028373:6180-6199 | Msa1437870:intron | 30.0% | |
| TGATGGTTGACTATCATTTA+TGG | + | tig0028373:6197-6216 | Msa1437870:intron | 30.0% | |
| GATGGTTGACTATCATTTAT+GGG | + | tig0028373:6198-6217 | Msa1437870:intron | 30.0% | |
| !!! | TGCCTTTTTTAACACCATTT+GGG | + | tig0028373:6243-6262 | Msa1437870:intron | 30.0% |
| ! | AACCCAAATGGTGTTAAAAA+AGG | - | tig0028373:6248-6267 | Msa1437870:intergenic | 30.0% |
| CGTATAATGTAAAACCCAAA+TGG | - | tig0028373:6260-6279 | Msa1437870:intergenic | 30.0% | |
| ACATTATACGATTGTGTATG+TGG | + | tig0028373:6270-6289 | Msa1437870:intron | 30.0% | |
| TTATTATGGATATGCATGCT+TGG | + | tig0028373:6308-6327 | Msa1437870:intron | 30.0% | |
| !! | GGTTTTGTGCTTCTATATTA+TGG | + | tig0028373:6385-6404 | Msa1437870:CDS | 30.0% |
| ATAGATAACAATTTCCACGA+AGG | + | tig0028373:6539-6558 | Msa1437870:CDS | 30.0% | |
| AAACCTGTATTGCAGTTTAT+TGG | + | tig0028373:6719-6738 | Msa1437870:intron | 30.0% | |
| TTTCCAATAAACTGCAATAC+AGG | - | tig0028373:6725-6744 | Msa1437870:intergenic | 30.0% | |
| ! | CTAAATTTGGACCAAGTTTT+CGG | - | tig0028373:6942-6961 | Msa1437870:intergenic | 30.0% |
| AAACAATAAAGTTGTGCCAT+TGG | - | tig0028373:7309-7328 | Msa1437870:intergenic | 30.0% | |
| TAATGTGCTTTCTGCATAAA+CGG | + | tig0028373:7366-7385 | Msa1437870:CDS | 30.0% | |
| TGATCTACATAGAGACTTAA+GGG | - | tig0028373:7450-7469 | Msa1437870:intergenic | 30.0% | |
| CATCAACAAACATTACAAAG+TGG | - | tig0028373:7635-7654 | Msa1437870:intergenic | 30.0% | |
| TTGATGAAATACTTCTTCAC+AGG | + | tig0028373:7649-7668 | Msa1437870:intron | 30.0% | |
| TGATGAAATACTTCTTCACA+GGG | + | tig0028373:7650-7669 | Msa1437870:intron | 30.0% | |
| !! | TGGAATAGTAAGTATTGACA+TGG | + | tig0028373:7755-7774 | Msa1437870:intron | 30.0% |
| !!! | ACTTATTTTGGCTGCTTTAT+TGG | + | tig0028373:8156-8175 | Msa1437870:CDS | 30.0% |
| !!! | CTTATTTTGGCTGCTTTATT+GGG | + | tig0028373:8157-8176 | Msa1437870:CDS | 30.0% |
| ! | GCAAGGCATAATTTGAATTT+TGG | - | tig0028373:8296-8315 | Msa1437870:intergenic | 30.0% |
| !!! | GCTTCTCTATTACTTTTTTG+AGG | + | tig0028373:8337-8356 | Msa1437870:intron | 30.0% |
| GCAATACTAGAACAATAATG+TGG | - | tig0028373:8438-8457 | Msa1437870:intergenic | 30.0% | |
| AGGTGATTAAGAAATGAATC+AGG | - | tig0028373:8473-8492 | Msa1437870:intergenic | 30.0% | |
| AGAGATATTTGGAAAAGAGA+AGG | - | tig0028373:8493-8512 | Msa1437870:intergenic | 30.0% | |
| !!! | GCATAGTCATTTTTCCTATA+CGG | + | tig0028373:8764-8783 | Msa1437870:three_prime_UTR | 30.0% |
| TGAATAATCACAGAAGCCAT+TGG | - | tig0028373:4624-4643 | Msa1437870:intergenic | 35.0% | |
| GCTCAAAATATGAACATCTC+TGG | - | tig0028373:4712-4731 | Msa1437870:intergenic | 35.0% | |
| AAATGTCTGTCAAAGGATCA+GGG | + | tig0028373:4879-4898 | Msa1437870:intron | 35.0% | |
| TCGGTTTAAAGATCACAATG+TGG | - | tig0028373:5115-5134 | Msa1437870:intergenic | 35.0% | |
| AGTTAACATGATACTGGAGT+CGG | - | tig0028373:5134-5153 | Msa1437870:intergenic | 35.0% | |
| ATTTATACATCCAACAGTCC+AGG | + | tig0028373:5179-5198 | Msa1437870:intron | 35.0% | |
| !! | TGTTTTGAATTTTCAGGAGG+AGG | + | tig0028373:5287-5306 | Msa1437870:intron | 35.0% |
| !! | AATTTTCAGGAGGAGGATTT+GGG | + | tig0028373:5294-5313 | Msa1437870:intron | 35.0% |
| !!! | TTCTGTTTTTGCTTCTTTGG+TGG | + | tig0028373:5359-5378 | Msa1437870:CDS | 35.0% |
| ! | TTCTGGTTATTGGTTATACC+TGG | + | tig0028373:5422-5441 | Msa1437870:CDS | 35.0% |
| ! | TTCAAGGAAGTGCAAAACTA+AGG | - | tig0028373:5574-5593 | Msa1437870:intergenic | 35.0% |
| CCAATCCTTCATGGAATATA+AGG | - | tig0028373:6086-6105 | Msa1437870:intergenic | 35.0% | |
| CCTTATATTCCATGAAGGAT+TGG | + | tig0028373:6083-6102 | Msa1437870:intron | 35.0% | |
| !!! | CTGCCTTTTTTAACACCATT+TGG | + | tig0028373:6242-6261 | Msa1437870:intron | 35.0% |
| ACTGTTATGCAGGTATACAT+TGG | + | tig0028373:6341-6360 | Msa1437870:intron | 35.0% | |
| TGTGCTTCTATATTATGGGT+TGG | + | tig0028373:6390-6409 | Msa1437870:CDS | 35.0% | |
| !! | TTCTATATTATGGGTTGGAC+AGG | + | tig0028373:6395-6414 | Msa1437870:CDS | 35.0% |
| GAAGACTACTGACAATATGA+AGG | - | tig0028373:6450-6469 | Msa1437870:intergenic | 35.0% | |
| ATCGAAGATCAGTGAAGATA+TGG | - | tig0028373:6472-6491 | Msa1437870:intergenic | 35.0% | |
| TTCATGATTGACCGAAAACT+TGG | + | tig0028373:6928-6947 | Msa1437870:intron | 35.0% | |
| ! | ATTTGCTACAATCCATGTTG+TGG | + | tig0028373:7010-7029 | Msa1437870:intron | 35.0% |
| AAACAGTTGTAGACTTGTAG+TGG | + | tig0028373:7071-7090 | Msa1437870:intron | 35.0% | |
| ATTTCGTTTCTCATCACTGT+AGG | + | tig0028373:7274-7293 | Msa1437870:intron | 35.0% | |
| ! | TTCCTTTTCGTTATGACCTT+TGG | + | tig0028373:7335-7354 | Msa1437870:CDS | 35.0% |
| GCACATTAATATTGCACCAA+AGG | - | tig0028373:7354-7373 | Msa1437870:intergenic | 35.0% | |
| AATGTGCTTTCTGCATAAAC+GGG | + | tig0028373:7367-7386 | Msa1437870:CDS | 35.0% | |
| GTGATCTACATAGAGACTTA+AGG | - | tig0028373:7451-7470 | Msa1437870:intergenic | 35.0% | |
| TAGACCTGAGTATGCTATAA+GGG | - | tig0028373:7516-7535 | Msa1437870:intergenic | 35.0% | |
| TCCTCATGATCTTCCAATAA+TGG | + | tig0028373:7581-7600 | Msa1437870:intron | 35.0% | |
| ACCATTATTGGAAGATCATG+AGG | - | tig0028373:7585-7604 | Msa1437870:intergenic | 35.0% | |
| GGAAAGAAAACAAGAACTCA+GGG | - | tig0028373:7609-7628 | Msa1437870:intergenic | 35.0% | |
| AGGAAAGAAAACAAGAACTC+AGG | - | tig0028373:7610-7629 | Msa1437870:intergenic | 35.0% | |
| ACAAACATTACAAAGTGGAC+AGG | - | tig0028373:7630-7649 | Msa1437870:intergenic | 35.0% | |
| TATGTTGTAACTCCAGCAAT+TGG | + | tig0028373:7687-7706 | Msa1437870:CDS | 35.0% | |
| GTATTGCAATGGCAGTATAT+GGG | + | tig0028373:7724-7743 | Msa1437870:CDS | 35.0% | |
| TATTGCAATGGCAGTATATG+GGG | + | tig0028373:7725-7744 | Msa1437870:CDS | 35.0% | |
| AATGCAAAACTGTAGTTCCT+TGG | + | tig0028373:7778-7797 | Msa1437870:intron | 35.0% | |
| ATGCAAAACTGTAGTTCCTT+GGG | + | tig0028373:7779-7798 | Msa1437870:intron | 35.0% | |
| TTAAATATGCCAGTGTTCTC+TGG | + | tig0028373:7896-7915 | Msa1437870:intron | 35.0% | |
| TCTTACTTCTGCTAGATTTC+AGG | + | tig0028373:8000-8019 | Msa1437870:CDS | 35.0% | |
| TTCGTAACATTCCTGTTGTT+TGG | + | tig0028373:8023-8042 | Msa1437870:intron | 35.0% | |
| TAATGTACCAACAAATCCAC+TGG | - | tig0028373:8131-8150 | Msa1437870:intergenic | 35.0% | |
| TTTATAATACTTTGCGGTGC+AGG | + | tig0028373:8530-8549 | Msa1437870:intron | 35.0% | |
| ! | CTTTTGCACAGCTAAAGATA+TGG | + | tig0028373:8559-8578 | Msa1437870:CDS | 35.0% |
| ! | AATTGCTACGGTGTTCTTTT+TGG | + | tig0028373:8593-8612 | Msa1437870:CDS | 35.0% |
| !!! | TGTCACTCTGCAGTTTTTTA+TGG | + | tig0028373:8670-8689 | Msa1437870:CDS | 35.0% |
| !!! | ACTCTGCAGTTTTTTATGGT+TGG | + | tig0028373:8674-8693 | Msa1437870:CDS | 35.0% |
| !!! | TTTTTTATGGTTGGCTCTCA+AGG | + | tig0028373:8683-8702 | Msa1437870:CDS | 35.0% |
| ACATTAAATTCACTCACTGG+TGG | - | tig0028373:8730-8749 | Msa1437870:intergenic | 35.0% | |
| GCAACATTAAATTCACTCAC+TGG | - | tig0028373:8733-8752 | Msa1437870:intergenic | 35.0% | |
| TGTACACTTCATTCAACTGA+AGG | - | tig0028373:8797-8816 | Msa1437870:intergenic | 35.0% | |
| AGACATACATGGAGTAGAGT+TGG | - | tig0028373:4560-4579 | Msa0950210:intergenic | 40.0% | |
| GAACTGAGAACTTGAACCAA+TGG | + | tig0028373:4605-4624 | Msa1437870:exon | 40.0% | |
| ! | TCTCTGGTATGGCTTTTATG+CGG | - | tig0028373:4696-4715 | Msa1437870:intergenic | 40.0% |
| CAAATGTCTGTCAAAGGATC+AGG | + | tig0028373:4878-4897 | Msa1437870:intron | 40.0% | |
| ! | GCAACATAGAAATTGGTCTC+AGG | - | tig0028373:4932-4951 | Msa1437870:intergenic | 40.0% |
| ACATCCAACAACCTAGAAAC+CGG | + | tig0028373:5042-5061 | Msa1437870:intron | 40.0% | |
| ATGTTCAATTCCTGGACTGT+TGG | - | tig0028373:5192-5211 | Msa1437870:intergenic | 40.0% | |
| ACAGTCCAGGAATTGAACAT+TGG | + | tig0028373:5192-5211 | Msa1437870:intron | 40.0% | |
| AGTCTCCAATGTTCAATTCC+TGG | - | tig0028373:5200-5219 | Msa1437870:intergenic | 40.0% | |
| ATTGTGAATTTGGAGGCTAG+TGG | + | tig0028373:5252-5271 | Msa1437870:intron | 40.0% | |
| !! | GAATTTTCAGGAGGAGGATT+TGG | + | tig0028373:5293-5312 | Msa1437870:intron | 40.0% |
| !!! | TTTTTGCTTCTTTGGTGGTG+CGG | + | tig0028373:5364-5383 | Msa1437870:CDS | 40.0% |
| ! | TCCAAGAATGCTTTGATGGT+TGG | + | tig0028373:5396-5415 | Msa1437870:CDS | 40.0% |
| ! | TCCAACCATCAAAGCATTCT+TGG | - | tig0028373:5400-5419 | Msa1437870:intergenic | 40.0% |
| ! | TGGTTGGAACTTCTGGTTAT+TGG | + | tig0028373:5412-5431 | Msa1437870:CDS | 40.0% |
| !!! | ATTTTGATTTCGGCTTAGGG+TGG | + | tig0028373:5955-5974 | Msa1437870:intron | 40.0% |
| !! | ATGCAGGTATACATTGGTTC+CGG | + | tig0028373:6347-6366 | Msa1437870:intron | 40.0% |
| CTGACAATATGAAGGAACTG+TGG | - | tig0028373:6442-6461 | Msa1437870:intergenic | 40.0% | |
| AGTTAGATATGTTCCCTGAC+AGG | - | tig0028373:6498-6517 | Msa1437870:intergenic | 40.0% | |
| ! | GCAGTAATTGGTGACTTCAA+CGG | + | tig0028373:6563-6582 | Msa1437870:CDS | 40.0% |
| ACATTTGCTCTACTCAGTGA+TGG | + | tig0028373:6752-6771 | Msa1437870:CDS | 40.0% | |
| CATTTGCTCTACTCAGTGAT+GGG | + | tig0028373:6753-6772 | Msa1437870:CDS | 40.0% | |
| TCTTGGTTGGCAATTACGAA+TGG | + | tig0028373:6870-6889 | Msa1437870:intron | 40.0% | |
| ! | TTGTAGTGGTTTGCCAACAA+AGG | + | tig0028373:7085-7104 | Msa1437870:intron | 40.0% |
| CTAGGTGTTTGCTCAATGTT+TGG | + | tig0028373:7109-7128 | Msa1437870:intron | 40.0% | |
| CACCAAAGGTCATAACGAAA+AGG | - | tig0028373:7340-7359 | Msa1437870:intergenic | 40.0% | |
| ATGTGCTTTCTGCATAAACG+GGG | + | tig0028373:7368-7387 | Msa1437870:CDS | 40.0% | |
| TAAACGGGGTGATAATAGCA+AGG | + | tig0028373:7382-7401 | Msa1437870:CDS | 40.0% | |
| AAACGGGGTGATAATAGCAA+GGG | + | tig0028373:7383-7402 | Msa1437870:CDS | 40.0% | |
| GTCTCTATGTAGATCACTCA+CGG | + | tig0028373:7454-7473 | Msa1437870:intron | 40.0% | |
| TCTCTATGTAGATCACTCAC+GGG | + | tig0028373:7455-7474 | Msa1437870:intron | 40.0% | |
| ATACCCCTTATAGCATACTC+AGG | + | tig0028373:7509-7528 | Msa1437870:intron | 40.0% | |
| AGACCTGAGTATGCTATAAG+GGG | - | tig0028373:7515-7534 | Msa1437870:intergenic | 40.0% | |
| GTAGACCTGAGTATGCTATA+AGG | - | tig0028373:7517-7536 | Msa1437870:intergenic | 40.0% | |
| GTCTACAACACGCATTTGTA+TGG | + | tig0028373:7531-7550 | Msa1437870:CDS | 40.0% | |
| AGAACTCAGGGAACCATTAT+TGG | - | tig0028373:7597-7616 | Msa1437870:intergenic | 40.0% | |
| TGAAATACTTCTTCACAGGG+CGG | + | tig0028373:7653-7672 | Msa1437870:intron | 40.0% | |
| TGCTGGAGTTACAACATACT+TGG | - | tig0028373:7685-7704 | Msa1437870:intergenic | 40.0% | |
| !! | TTCTGGTGTTGGTATTGCAA+TGG | + | tig0028373:7713-7732 | Msa1437870:CDS | 40.0% |
| GGTATTGCAATGGCAGTATA+TGG | + | tig0028373:7723-7742 | Msa1437870:CDS | 40.0% | |
| !! | TGTAATGGATGTGAGACCAA+AGG | - | tig0028373:7937-7956 | Msa1437870:intergenic | 40.0% |
| !!! | TTCTTTTGGAGCTTTTGCTC+AGG | + | tig0028373:7965-7984 | Msa1437870:CDS | 40.0% |
| ATATACGTCAGCCAAACAAC+AGG | - | tig0028373:8037-8056 | Msa1437870:intergenic | 40.0% | |
| ! | AGCATATCCAGTGGATTTGT+TGG | + | tig0028373:8121-8140 | Msa1437870:intron | 40.0% |
| CAGCGAAATAAAAGGGTAGA+TGG | - | tig0028373:8261-8280 | Msa1437870:intergenic | 40.0% | |
| TAGCATGTTAGCACTTAGCA+AGG | - | tig0028373:8313-8332 | Msa1437870:intergenic | 40.0% | |
| ACTGCTTGGAACGAAATGTA+CGG | - | tig0028373:8621-8640 | Msa1437870:intergenic | 40.0% | |
| TTCGTTCCAAGCAGTTATCA+TGG | + | tig0028373:8626-8645 | Msa1437870:CDS | 40.0% | |
| ACATGACCATGATAACTGCT+TGG | - | tig0028373:8635-8654 | Msa1437870:intergenic | 40.0% | |
| CACACGCTAGACAATGTGAT+TGG | - | tig0028373:4908-4927 | Msa1437870:intergenic | 45.0% | |
| TCTCAATTGCTCCGGTTTCT+AGG | - | tig0028373:5056-5075 | Msa1437870:intergenic | 45.0% | |
| ! | ATCTGGAGTCTCAATTGCTC+CGG | - | tig0028373:5064-5083 | Msa1437870:intergenic | 45.0% |
| ATTTGGGTACGACTTCGCTT+GGG | + | tig0028373:5310-5329 | Msa1437870:CDS | 45.0% | |
| CGGATCCAAGAATGCTTTGA+TGG | + | tig0028373:5392-5411 | Msa1437870:CDS | 45.0% | |
| ! | GCTTTGATGGTTGGAACTTC+TGG | + | tig0028373:5405-5424 | Msa1437870:CDS | 45.0% |
| CTGCAAACTTGAAGCCCAAT+TGG | + | tig0028373:5445-5464 | Msa1437870:CDS | 45.0% | |
| CGCACTTGCAGTTACCAATT+GGG | - | tig0028373:5462-5481 | Msa1437870:intergenic | 45.0% | |
| CCTGCATAACAGTCACTCAA+TGG | - | tig0028373:6334-6353 | Msa1437870:intergenic | 45.0% | |
| CCATTGAGTGACTGTTATGC+AGG | + | tig0028373:6331-6350 | Msa1437870:intron | 45.0% | |
| TTCCGGCTTCTGTGTATCTT+GGG | + | tig0028373:6364-6383 | Msa1437870:CDS | 45.0% | |
| AACCCAAGATACACAGAAGC+CGG | - | tig0028373:6369-6388 | Msa1437870:intergenic | 45.0% | |
| TGATCTTCGATTGACCTGTC+AGG | + | tig0028373:6481-6500 | Msa1437870:intron | 45.0% | |
| GATCTTCGATTGACCTGTCA+GGG | + | tig0028373:6482-6501 | Msa1437870:intron | 45.0% | |
| ! | TTCCACGAAGGTGCAGTAAT+TGG | + | tig0028373:6551-6570 | Msa1437870:CDS | 45.0% |
| TGACTTCAACGGAGAGTTCT+GGG | + | tig0028373:6574-6593 | Msa1437870:CDS | 45.0% | |
| GGGTGTATACACACTTCATC+AGG | + | tig0028373:6595-6614 | Msa1437870:CDS | 45.0% | |
| TTTCCATGTTTACGCGCTCT+TGG | + | tig0028373:6853-6872 | Msa1437870:intron | 45.0% | |
| ACTTGGTCATTGCCACAACA+TGG | - | tig0028373:7025-7044 | Msa1437870:intergenic | 45.0% | |
| ! | TGGTTTGCCAACAAAGGTCT+AGG | + | tig0028373:7091-7110 | Msa1437870:intron | 45.0% |
| GCAAACACCTAGACCTTTGT+TGG | - | tig0028373:7101-7120 | Msa1437870:intergenic | 45.0% | |
| TCGTTTCTCATCACTGTAGG+AGG | + | tig0028373:7277-7296 | Msa1437870:intron | 45.0% | |
| CGTTTCTCATCACTGTAGGA+GGG | + | tig0028373:7278-7297 | Msa1437870:intron | 45.0% | |
| CAAGGGAGGATACAAGCATT+TGG | + | tig0028373:7400-7419 | Msa1437870:CDS | 45.0% | |
| GGATACAAGCATTTGGATGC+CGG | + | tig0028373:7407-7426 | Msa1437870:CDS | 45.0% | |
| ! | ACTCCAGCAATTGGTGTTTC+TGG | + | tig0028373:7696-7715 | Msa1437870:CDS | 45.0% |
| ACACCAGAAACACCAATTGC+TGG | - | tig0028373:7702-7721 | Msa1437870:intergenic | 45.0% | |
| !! | GCAATTGGTGTTTCTGGTGT+TGG | + | tig0028373:7702-7721 | Msa1437870:CDS | 45.0% |
| ! | GCAGTATATGGGGCTTTTGA+TGG | + | tig0028373:7735-7754 | Msa1437870:CDS | 45.0% |
| CAAAACTGTAGTTCCTTGGG+TGG | + | tig0028373:7782-7801 | Msa1437870:intron | 45.0% | |
| TTCTGATGCAGCATATCCAG+TGG | + | tig0028373:8112-8131 | Msa1437870:intron | 45.0% | |
| ! | TTGGCTGCTTTATTGGGCAT+TGG | + | tig0028373:8163-8182 | Msa1437870:CDS | 45.0% |
| !! | GCTTTATTGGGCATTGGTGA+TGG | + | tig0028373:8169-8188 | Msa1437870:CDS | 45.0% |
| ACGCAGCTCAATGCTTTACT+AGG | + | tig0028373:8202-8221 | Msa1437870:CDS | 45.0% | |
| TAATACTTTGCGGTGCAGGA+AGG | + | tig0028373:8534-8553 | Msa1437870:intron | 45.0% | |
| AATACTTTGCGGTGCAGGAA+GGG | + | tig0028373:8535-8554 | Msa1437870:intron | 45.0% | |
| TGCTTGGAACGAAATGTACG+GGG | - | tig0028373:8619-8638 | Msa1437870:intergenic | 45.0% | |
| CTGCTTGGAACGAAATGTAC+GGG | - | tig0028373:8620-8639 | Msa1437870:intergenic | 45.0% | |
| ! | TTTATGGTTGGCTCTCAAGG+TGG | + | tig0028373:8686-8705 | Msa1437870:CDS | 45.0% |
| ! | TTATGGTTGGCTCTCAAGGT+GGG | + | tig0028373:8687-8706 | Msa1437870:CDS | 45.0% |
| AATTCACTCACTGGTGGAGA+GGG | - | tig0028373:8724-8743 | Msa1437870:intergenic | 45.0% | |
| AAATTCACTCACTGGTGGAG+AGG | - | tig0028373:8725-8744 | Msa1437870:intergenic | 45.0% | |
| CTGAAGGAAATGTGCCGTAT+AGG | - | tig0028373:8781-8800 | Msa1437870:intergenic | 45.0% | |
| ! | TGCTCCGGTTTCTAGGTTGT+TGG | - | tig0028373:5049-5068 | Msa1437870:intergenic | 50.0% |
| GATTTGGGTACGACTTCGCT+TGG | + | tig0028373:5309-5328 | Msa1437870:CDS | 50.0% | |
| !! | TCTTTGGTGGTGCGGATTCT+CGG | + | tig0028373:5372-5391 | Msa1437870:CDS | 50.0% |
| GCGCACTTGCAGTTACCAAT+TGG | - | tig0028373:5463-5482 | Msa1437870:intergenic | 50.0% | |
| ACCTGACAGCAGTGACTACA+TGG | + | tig0028373:5827-5846 | Msa1437870:intron | 50.0% | |
| TCCATGTAGTCACTGCTGTC+AGG | - | tig0028373:5831-5850 | Msa1437870:intergenic | 50.0% | |
| TGACAGCAGTGACTACATGG+AGG | + | tig0028373:5830-5849 | Msa1437870:intron | 50.0% | |
| GTTCCGGCTTCTGTGTATCT+TGG | + | tig0028373:6363-6382 | Msa1437870:CDS | 50.0% | |
| TATAGCATGACTGCGTGCAG+TGG | - | tig0028373:6522-6541 | Msa1437870:intergenic | 50.0% | |
| CACCAATTACTGCACCTTCG+TGG | - | tig0028373:6556-6575 | Msa1437870:intergenic | 50.0% | |
| GTGACTTCAACGGAGAGTTC+TGG | + | tig0028373:6573-6592 | Msa1437870:CDS | 50.0% | |
| GACTTCAACGGAGAGTTCTG+GGG | + | tig0028373:6575-6594 | Msa1437870:CDS | 50.0% | |
| ! | CAACCAAGAGCGCGTAAACA+TGG | - | tig0028373:6859-6878 | Msa1437870:intergenic | 50.0% |
| CATGTTTACGCGCTCTTGGT+TGG | + | tig0028373:6857-6876 | Msa1437870:intron | 50.0% | |
| !! | CTGTAGGAGGGAAGTACCAA+TGG | + | tig0028373:7290-7309 | Msa1437870:intron | 50.0% |
| AACTGTAGTTCCTTGGGTGG+TGG | + | tig0028373:7785-7804 | Msa1437870:intron | 50.0% | |
| ! | CACTTTTGAACCACCACCCA+AGG | - | tig0028373:7798-7817 | Msa1437870:intergenic | 50.0% |
| ATACTTTGCGGTGCAGGAAG+GGG | + | tig0028373:8536-8555 | Msa1437870:intron | 50.0% | |
| ! | GCAGAGCGCTACAATTGCTA+CGG | + | tig0028373:8581-8600 | Msa1437870:CDS | 50.0% |
| ! | TATGGTTGGCTCTCAAGGTG+GGG | + | tig0028373:8688-8707 | Msa1437870:CDS | 50.0% |
| CTAACGGCGTTTCTTCGTCG+CGG | - | tig0028373:4647-4666 | Msa1437870:intergenic | 55.0% | |
| AGACTCCAGATGACGTAGCG+TGG | + | tig0028373:5073-5092 | Msa1437870:intron | 55.0% | |
| GACTCCAGATGACGTAGCGT+GGG | + | tig0028373:5074-5093 | Msa1437870:intron | 55.0% | |
| ATGACCCACGCTACGTCATC+TGG | - | tig0028373:5081-5100 | Msa1437870:intergenic | 55.0% | |
| ! | TGGGCTTCAAGTTTGCAGCC+AGG | - | tig0028373:5443-5462 | Msa1437870:intergenic | 55.0% |
| GCAGTGACTACATGGAGGCT+TGG | + | tig0028373:5835-5854 | Msa1437870:intron | 55.0% | |
| CTACAGGGGCCAATCCTTCA+TGG | - | tig0028373:6095-6114 | Msa1437870:intergenic | 55.0% | |
| !! | TGCTCTACTCAGTGATGGGC+AGG | + | tig0028373:6757-6776 | Msa1437870:CDS | 55.0% |
| !! | CTCAGTGATGGGCAGGTATG+TGG | + | tig0028373:6764-6783 | Msa1437870:intron | 55.0% |
| !! | AGTGATGGGCAGGTATGTGG+TGG | + | tig0028373:6767-6786 | Msa1437870:intron | 55.0% |
| CGGGGTGATAATAGCAAGGG+AGG | + | tig0028373:7386-7405 | Msa1437870:CDS | 55.0% | |
| GGACTTTCATTCACCAGCGC+CGG | - | tig0028373:7429-7448 | Msa1437870:intergenic | 55.0% | |
| AAGCATTTGGATGCCGGCGC+TGG | + | tig0028373:7413-7432 | Msa1437870:CDS | 60.0% | |
| TGCCAGTGTTCTCTGGTCGC+TGG | + | tig0028373:7903-7922 | Msa1437870:intron | 60.0% | |
| GACCAGCGACCAGAGAACAC+TGG | - | tig0028373:7908-7927 | Msa1437870:intergenic | 60.0% | |
| GTCGCTGGTCGTCTCACCTT+TGG | + | tig0028373:7918-7937 | Msa1437870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028373 | gene | 4432 | 8914 | 4432 | ID=Msa1437870;Name=Msa1437870 |
| tig0028373 | mRNA | 4432 | 8914 | 4432 | ID=Msa1437870-mRNA-1;Parent=Msa1437870;Name=Msa1437870-mRNA-1;_AED=0.33;_eAED=0.33;_QI=192|0.9|0.81|1|1|1|11|174|415 |
| tig0028373 | exon | 4432 | 4797 | 4432 | ID=Msa1437870-mRNA-1:exon:11010;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 5303 | 5466 | 5303 | ID=Msa1437870-mRNA-1:exon:11011;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 6353 | 6416 | 6353 | ID=Msa1437870-mRNA-1:exon:11012;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 6503 | 6616 | 6503 | ID=Msa1437870-mRNA-1:exon:11013;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 6734 | 6778 | 6734 | ID=Msa1437870-mRNA-1:exon:11014;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 7296 | 7434 | 7296 | ID=Msa1437870-mRNA-1:exon:11015;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 7522 | 7552 | 7522 | ID=Msa1437870-mRNA-1:exon:11016;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 7671 | 7761 | 7671 | ID=Msa1437870-mRNA-1:exon:11017;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 7909 | 8021 | 7909 | ID=Msa1437870-mRNA-1:exon:11018;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 8123 | 8246 | 8123 | ID=Msa1437870-mRNA-1:exon:11019;Parent=Msa1437870-mRNA-1 |
| tig0028373 | exon | 8552 | 8914 | 8552 | ID=Msa1437870-mRNA-1:exon:11020;Parent=Msa1437870-mRNA-1 |
| tig0028373 | five_prime_UTR | 4432 | 4623 | 4432 | ID=Msa1437870-mRNA-1:five_prime_utr;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 4624 | 4797 | 4624 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 5303 | 5466 | 5303 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 6353 | 6416 | 6353 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 6503 | 6616 | 6503 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 6734 | 6778 | 6734 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 7296 | 7434 | 7296 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 7522 | 7552 | 7522 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 7671 | 7761 | 7671 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 7909 | 8021 | 7909 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 8123 | 8246 | 8123 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | CDS | 8552 | 8740 | 8552 | ID=Msa1437870-mRNA-1:cds;Parent=Msa1437870-mRNA-1 |
| tig0028373 | three_prime_UTR | 8741 | 8914 | 8741 | ID=Msa1437870-mRNA-1:three_prime_utr;Parent=Msa1437870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
