Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409270 | XP_003625505.1 | 87.892 | 446 | 19 | 2 | 1 | 411 | 1 | 446 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409270 | sp|Q94AA1|UN933_ARATH | 62.228 | 413 | 122 | 5 | 7 | 387 | 4 | 414 | 1.37e-170 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409270 | G7L0K8 | 87.892 | 446 | 19 | 2 | 1 | 411 | 1 | 446 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104360 | Msa1409270 | 0.811647 | 6.307246e-51 | -8.615850e-47 |
| Msa1385820 | Msa1409270 | 0.991409 | 1.695016e-187 | -8.615850e-47 |
| Msa1409270 | Msa1437870 | 0.879835 | 9.005370e-70 | -8.615850e-47 |
| Msa1123840 | Msa1409270 | 0.928308 | 3.469607e-92 | -8.615850e-47 |
| Msa0600820 | Msa1409270 | 0.805350 | 1.392553e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409270 | MtrunA17_Chr7g0262981 | 87.892 | 446 | 19 | 2 | 1 | 411 | 1 | 446 | 0.0 | 760 |
| Msa1409270 | MtrunA17_Chr7g0262971 | 82.658 | 444 | 45 | 1 | 1 | 412 | 1 | 444 | 0.0 | 718 |
| Msa1409270 | MtrunA17_Chr7g0262951 | 71.364 | 440 | 87 | 3 | 10 | 410 | 2 | 441 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409270 | AT3G09470.2 | 62.558 | 430 | 127 | 5 | 7 | 404 | 4 | 431 | 1.88e-180 | 509 |
Find 97 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTGTATTGCAGTTTAT+TGG | 0.159343 | tig0023498:+47138 | Msa1409270:intron |
| TTACTCATCTTTCTAGCTTA+TGG | 0.165736 | tig0023498:+45161 | Msa1409270:CDS |
| TACATTATATATACTTATTT+TGG | 0.171202 | tig0023498:+48563 | Msa1409270:CDS |
| TCTTACTTCTGCTAGATTTC+AGG | 0.182675 | tig0023498:+48419 | Msa1409270:CDS |
| GCTTTGATGGTTGGAACTTC+TGG | 0.243991 | tig0023498:+45825 | Msa1409270:CDS |
| ACTCCAGCAATTGGTGTTTC+TGG | 0.248058 | tig0023498:+48115 | Msa1409270:CDS |
| ATTACATCAATAGTTTCTTT+TGG | 0.283502 | tig0023498:+48370 | Msa1409270:CDS |
| GGTATTGCAATGGCAGTATA+TGG | 0.286764 | tig0023498:+48142 | Msa1409270:CDS |
| GTTCCGGCTTCTGTGTATCT+TGG | 0.288738 | tig0023498:+46783 | Msa1409270:CDS |
| TCCAACCATCAAAGCATTCT+TGG | 0.289790 | tig0023498:-45817 | None:intergenic |
| AATCTTGTCTTGTAAAGAAT+TGG | 0.293097 | tig0023498:-44871 | None:intergenic |
| TTCCACGAAGGTGCAGTAAT+TGG | 0.303941 | tig0023498:+46971 | Msa1409270:CDS |
| CGGATCCAAGAATGCTTTGA+TGG | 0.318222 | tig0023498:+45812 | Msa1409270:CDS |
| GTGACTTCAACGGAGAGTTC+TGG | 0.318467 | tig0023498:+46993 | Msa1409270:CDS |
| GTCGCTGGTCGTCTTACTTC+TGG | 0.328349 | tig0023498:+48337 | Msa1409270:CDS |
| TAATGTGCTTTCTGCATAAA+CGG | 0.336205 | tig0023498:+47785 | Msa1409270:CDS |
| TGGTTGGAACTTCTGGTTAT+TGG | 0.338454 | tig0023498:+45832 | Msa1409270:CDS |
| TCTTTGGTGGTGCGGATTCT+CGG | 0.346413 | tig0023498:+45792 | Msa1409270:CDS |
| CGCACTTGCAGTTACCAATT+GGG | 0.364795 | tig0023498:-45879 | None:intergenic |
| ATGCAGGTATACATTGGTTC+CGG | 0.390937 | tig0023498:+46767 | Msa1409270:intron |
| AATGTGCTTTCTGCATAAAC+GGG | 0.395329 | tig0023498:+47786 | Msa1409270:CDS |
| TGACTTCAACGGAGAGTTCT+GGG | 0.396002 | tig0023498:+46994 | Msa1409270:CDS |
| CTGAAGGAAATGTGCCGTAT+AGG | 0.399751 | tig0023498:-49197 | None:intergenic |
| CTGCAAACTTGAAGCCCAAT+TGG | 0.400523 | tig0023498:+45865 | Msa1409270:CDS |
| AGTAGAGTTGGAAAATTAGT+TGG | 0.400722 | tig0023498:-44965 | None:intergenic |
| TTCCGGCTTCTGTGTATCTT+GGG | 0.404081 | tig0023498:+46784 | Msa1409270:CDS |
| ACGCAGCTCAATGCTTTACT+AGG | 0.408249 | tig0023498:+48621 | Msa1409270:CDS |
| TTAAATATGCCAGTGTTCTC+TGG | 0.409023 | tig0023498:+48315 | Msa1409270:intron |
| AAAAGAAACTATTGATGTAA+TGG | 0.422422 | tig0023498:-48368 | None:intergenic |
| GCTTTATTGGGCATTGGTGA+TGG | 0.429288 | tig0023498:+48588 | Msa1409270:CDS |
| AGCATATCCAGTGGATTTGT+TGG | 0.430052 | tig0023498:+48540 | Msa1409270:intron |
| CAAGGGAGGATACAAGCATT+TGG | 0.433232 | tig0023498:+47819 | Msa1409270:CDS |
| TTCTATATTATGGGTTGGAC+AGG | 0.438750 | tig0023498:+46815 | Msa1409270:CDS |
| GTAGAGTTGGAAAATTAGTT+GGG | 0.440252 | tig0023498:-44964 | None:intergenic |
| GCAATTGGTGTTTCTGGTGT+TGG | 0.445627 | tig0023498:+48121 | Msa1409270:CDS |
| TCCAAGAATGCTTTGATGGT+TGG | 0.450947 | tig0023498:+45816 | Msa1409270:CDS |
| TGCTGGAGTTACAACATACT+TGG | 0.451971 | tig0023498:-48101 | None:intergenic |
| TTATGGTTGGCTCTCAAGGT+GGG | 0.452741 | tig0023498:+49106 | Msa1409270:CDS |
| AAGCATTTGGATGCCGGCGC+TGG | 0.452753 | tig0023498:+47832 | Msa1409270:CDS |
| GTCTACAACACGCATTTGTA+TGG | 0.454305 | tig0023498:+47950 | Msa1409270:CDS |
| TTCGTTCCAAGCAGTTATCA+TGG | 0.455355 | tig0023498:+49045 | Msa1409270:CDS |
| TTGGCTGCTTTATTGGGCAT+TGG | 0.459579 | tig0023498:+48582 | Msa1409270:CDS |
| ACACCAGAAACACCAATTGC+TGG | 0.459964 | tig0023498:-48118 | None:intergenic |
| GTATTGCAATGGCAGTATAT+GGG | 0.463221 | tig0023498:+48143 | Msa1409270:CDS |
| TGCTCTACTCAGTGATGGGC+AGG | 0.464947 | tig0023498:+47176 | Msa1409270:CDS |
| GATTTGGGTACGACTTCGCT+TGG | 0.480382 | tig0023498:+45729 | Msa1409270:CDS |
| TTCTGGTTATTGGTTATACC+TGG | 0.481480 | tig0023498:+45842 | Msa1409270:CDS |
| TATGTTGTAACTCCAGCAAT+TGG | 0.485973 | tig0023498:+48106 | Msa1409270:CDS |
| GCTCAAAATATGAACATCTC+TGG | 0.487925 | tig0023498:-45129 | None:intergenic |
| TGTGCTTCTATATTATGGGT+TGG | 0.496046 | tig0023498:+46810 | Msa1409270:CDS |
| CACCAATTACTGCACCTTCG+TGG | 0.497583 | tig0023498:-46973 | None:intergenic |
| AAATATGAACATCTCTGGTA+TGG | 0.497989 | tig0023498:-45124 | None:intergenic |
| TATGGTTGGCTCTCAAGGTG+GGG | 0.500881 | tig0023498:+49107 | Msa1409270:CDS |
| CACCAAAGGTCATAACGAAA+AGG | 0.505513 | tig0023498:-47756 | None:intergenic |
| ACATTTGCTCTACTCAGTGA+TGG | 0.507367 | tig0023498:+47171 | Msa1409270:CDS |
| ATTTGGGTACGACTTCGCTT+GGG | 0.510297 | tig0023498:+45730 | Msa1409270:CDS |
| CTGCTTGGAACGAAATGTAC+GGG | 0.512143 | tig0023498:-49036 | None:intergenic |
| TGTACACTTCATTCAACTGA+AGG | 0.514226 | tig0023498:-49213 | None:intergenic |
| GGATACAAGCATTTGGATGC+CGG | 0.516171 | tig0023498:+47826 | Msa1409270:CDS |
| GGGTGTATACACACTTCATC+AGG | 0.518181 | tig0023498:+47015 | Msa1409270:CDS |
| AACCCAAGATACACAGAAGC+CGG | 0.518246 | tig0023498:-46786 | None:intergenic |
| AAACAATAAAGTTGTGCCAT+TGG | 0.524098 | tig0023498:-47725 | None:intergenic |
| TGCCAGTGTTCTCTGGTCGC+TGG | 0.524130 | tig0023498:+48322 | Msa1409270:intron |
| TTTATGGTTGGCTCTCAAGG+TGG | 0.530407 | tig0023498:+49105 | Msa1409270:CDS |
| TGGGCTTCAAGTTTGCAGCC+AGG | 0.531249 | tig0023498:-45860 | None:intergenic |
| TAATGTACCAACAAATCCAC+TGG | 0.537543 | tig0023498:-48547 | None:intergenic |
| TTCTGGTGTTGGTATTGCAA+TGG | 0.544148 | tig0023498:+48132 | Msa1409270:CDS |
| AGACATACATGGAGTAGAGT+TGG | 0.544896 | tig0023498:-44977 | None:intergenic |
| GCACATTAATATTGCACCAA+AGG | 0.548234 | tig0023498:-47770 | None:intergenic |
| GCAACATTAAATTCACTCAC+TGG | 0.560043 | tig0023498:-49149 | None:intergenic |
| ACATGACCATGATAACTGCT+TGG | 0.560534 | tig0023498:-49051 | None:intergenic |
| ACTGCTTGGAACGAAATGTA+CGG | 0.561713 | tig0023498:-49037 | None:intergenic |
| GGACTTTCATTCACCAGCGC+CGG | 0.562462 | tig0023498:-47845 | None:intergenic |
| TATTGCAATGGCAGTATATG+GGG | 0.568621 | tig0023498:+48144 | Msa1409270:CDS |
| CATTTGCTCTACTCAGTGAT+GGG | 0.570849 | tig0023498:+47172 | Msa1409270:CDS |
| GAACTGAGAACTTGAACCAA+TGG | 0.576895 | tig0023498:+45025 | Msa1409270:exon |
| GCAGTAATTGGTGACTTCAA+CGG | 0.585247 | tig0023498:+46983 | Msa1409270:CDS |
| ACTGTTATGCAGGTATACAT+TGG | 0.590098 | tig0023498:+46761 | Msa1409270:intron |
| TGAATAATCACAGAAGCCAT+TGG | 0.592595 | tig0023498:-45041 | None:intergenic |
| AATTCACTCACTGGTGGAGA+GGG | 0.593392 | tig0023498:-49140 | None:intergenic |
| ATCAGTGATTCAACAACTAA+CGG | 0.599267 | tig0023498:-45080 | None:intergenic |
| TGTATCTATGTAGACATACA+TGG | 0.600352 | tig0023498:-44988 | None:intergenic |
| TATAGCATGACTGCGTGCAG+TGG | 0.601352 | tig0023498:-46939 | None:intergenic |
| CTGTAGGAGGGAAGTACCAA+TGG | 0.601368 | tig0023498:+47709 | Msa1409270:intron |
| AAATTCACTCACTGGTGGAG+AGG | 0.602947 | tig0023498:-49141 | None:intergenic |
| CGGGGTGATAATAGCAAGGG+AGG | 0.610044 | tig0023498:+47805 | Msa1409270:CDS |
| TAAACGGGGTGATAATAGCA+AGG | 0.610785 | tig0023498:+47801 | Msa1409270:CDS |
| TTCTGATGCAGCATATCCAG+TGG | 0.611801 | tig0023498:+48531 | Msa1409270:intron |
| ATGAAGCTAAAGAAATATTG+TGG | 0.614353 | tig0023498:-44909 | None:intergenic |
| GCAGAGCGCTACAATTGCTA+CGG | 0.636383 | tig0023498:+49000 | Msa1409270:CDS |
| ACATTAAATTCACTCACTGG+TGG | 0.641025 | tig0023498:-49146 | None:intergenic |
| GACTTCAACGGAGAGTTCTG+GGG | 0.657674 | tig0023498:+46995 | Msa1409270:CDS |
| AAACGGGGTGATAATAGCAA+GGG | 0.682006 | tig0023498:+47802 | Msa1409270:CDS |
| AATGCTATTTAAACATGACA+TGG | 0.693354 | tig0023498:+48644 | Msa1409270:CDS |
| TGCTTGGAACGAAATGTACG+GGG | 0.696058 | tig0023498:-49035 | None:intergenic |
| ATAGATAACAATTTCCACGA+AGG | 0.705993 | tig0023498:+46959 | Msa1409270:CDS |
| ATGTGCTTTCTGCATAAACG+GGG | 0.713089 | tig0023498:+47787 | Msa1409270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTTATTATTATTGTATT+TGG | + | tig0023498:45234-45253 | Msa1409270:intron | 10.0% |
| !!! | TTGATTTTAAATAAGATTAT+AGG | + | tig0023498:46156-46175 | Msa1409270:intron | 10.0% |
| !!! | TGATTTTAAATAAGATTATA+GGG | + | tig0023498:46157-46176 | Msa1409270:intron | 10.0% |
| !!! | TTTTTTTTTTTAAATAAGAC+TGG | + | tig0023498:47051-47070 | Msa1409270:intron | 10.0% |
| !!! | AGAATATTTTATATATTCTT+CGG | + | tig0023498:47665-47684 | Msa1409270:intron | 10.0% |
| !!! | TACATTATATATACTTATTT+TGG | + | tig0023498:48563-48582 | Msa1409270:CDS | 10.0% |
| !!! | ATCAAATTATTTAAGTTGTT+TGG | - | tig0023498:45654-45673 | None:intergenic | 15.0% |
| !! | AAATAATTTGATTGTGAATT+TGG | + | tig0023498:45662-45681 | Msa1409270:intron | 15.0% |
| !! | TATAGTAATTAATTATGTTC+TGG | + | tig0023498:46338-46357 | Msa1409270:intron | 15.0% |
| !! | ATAGTAATTAATTATGTTCT+GGG | + | tig0023498:46339-46358 | Msa1409270:intron | 15.0% |
| !!! | CATAAATCATATTTTGATTT+CGG | + | tig0023498:46365-46384 | Msa1409270:intron | 15.0% |
| !!! | TTTTTTGTTCTTATAGTATT+GGG | + | tig0023498:46398-46417 | Msa1409270:intron | 15.0% |
| !!! | TTTTTTCTTTAATAATCAAG+TGG | + | tig0023498:47243-47262 | Msa1409270:intron | 15.0% |
| !!! | TGTACAAACAAATTATTTTA+AGG | + | tig0023498:47564-47583 | Msa1409270:intron | 15.0% |
| !! | ATAATGATATAAGAGATATT+TGG | - | tig0023498:48923-48942 | None:intergenic | 15.0% |
| !! | ATTATTGTATTTGGATTATG+AGG | + | tig0023498:45243-45262 | Msa1409270:intron | 20.0% |
| !! | ATTTGACACAAATTTACTAA+TGG | - | tig0023498:45283-45302 | None:intergenic | 20.0% |
| !!! | ATTGTATGTTTTGAATTTTC+AGG | + | tig0023498:45701-45720 | Msa1409270:intron | 20.0% |
| !! | TGTATCTATCTTATTATTCA+AGG | - | tig0023498:46010-46029 | None:intergenic | 20.0% |
| !!! | TTCAATCAAAATGTTGATTA+TGG | - | tig0023498:46206-46225 | None:intergenic | 20.0% |
| !!! | GTTTTTTGTTCTTATAGTAT+TGG | + | tig0023498:46397-46416 | Msa1409270:intron | 20.0% |
| !!! | TTTTTGTTCTTATAGTATTG+GGG | + | tig0023498:46399-46418 | Msa1409270:intron | 20.0% |
| !!! | TGAATAATACTAGCTTATTA+TGG | + | tig0023498:46714-46733 | Msa1409270:intron | 20.0% |
| !! | ATTAAAACAACTTGAATACT+TGG | - | tig0023498:47461-47480 | None:intergenic | 20.0% |
| !! | AAAAGAAACTATTGATGTAA+TGG | - | tig0023498:48371-48390 | None:intergenic | 20.0% |
| !!! | ATTACATCAATAGTTTCTTT+TGG | + | tig0023498:48370-48389 | Msa1409270:CDS | 20.0% |
| !! | CAAAATGAAATTACATTCTA+AGG | - | tig0023498:48493-48512 | None:intergenic | 20.0% |
| !!! | CATTTTGCTTATATTTTCAT+TGG | + | tig0023498:48506-48525 | Msa1409270:intron | 20.0% |
| !! | TATATTTCAGCGAAATAAAA+GGG | - | tig0023498:48687-48706 | None:intergenic | 20.0% |
| !! | GTCAAATTTATAATACTTTG+CGG | + | tig0023498:48943-48962 | Msa1409270:intron | 20.0% |
| ! | AATCTTGTCTTGTAAAGAAT+TGG | - | tig0023498:44874-44893 | None:intergenic | 25.0% |
| ! | ATGAAGCTAAAGAAATATTG+TGG | - | tig0023498:44912-44931 | None:intergenic | 25.0% |
| ! | AAAGATTGCAACATAGAAAT+TGG | - | tig0023498:45359-45378 | None:intergenic | 25.0% |
| ! | GAGTTCAAGCTTATTTAATA+TGG | - | tig0023498:45396-45415 | None:intergenic | 25.0% |
| ! | ATGTATAAATATGTATGGAC+AGG | - | tig0023498:45589-45608 | None:intergenic | 25.0% |
| ! | GTTGGATGTATAAATATGTA+TGG | - | tig0023498:45594-45613 | None:intergenic | 25.0% |
| ! | TAATTTGATTGTGAATTTGG+AGG | + | tig0023498:45665-45684 | Msa1409270:intron | 25.0% |
| !!! | TTTTTCTGTTTTTGCTTCTT+TGG | + | tig0023498:45776-45795 | Msa1409270:CDS | 25.0% |
| ! | TATGAACTTATACTTTGGTA+GGG | - | tig0023498:46433-46452 | None:intergenic | 25.0% |
| ! | ATATGAACTTATACTTTGGT+AGG | - | tig0023498:46434-46453 | None:intergenic | 25.0% |
| ! | AAGCATATGAACTTATACTT+TGG | - | tig0023498:46438-46457 | None:intergenic | 25.0% |
| ! | ATTATCCTTATATTCCATGA+AGG | + | tig0023498:46498-46517 | Msa1409270:intron | 25.0% |
| ! | TCTTAACAAGTTAAACTACA+GGG | - | tig0023498:46530-46549 | None:intergenic | 25.0% |
| ! | ATCTTAACAAGTTAAACTAC+AGG | - | tig0023498:46531-46550 | None:intergenic | 25.0% |
| !!! | ATTTAGGTTTTGTTTTCTCT+AGG | - | tig0023498:46560-46579 | None:intergenic | 25.0% |
| !!! | TATATTGTTGTCGTTGATTT+AGG | - | tig0023498:46576-46595 | None:intergenic | 25.0% |
| !! | GTTTTGTGCTTCTATATTAT+GGG | + | tig0023498:46806-46825 | Msa1409270:CDS | 25.0% |
| !! | GTTTAAAGCTCAACTAAATT+TGG | - | tig0023498:47374-47393 | None:intergenic | 25.0% |
| ! | AAGGAAATGAAAATATGAGT+TGG | + | tig0023498:47583-47602 | Msa1409270:intron | 25.0% |
| ! | AGGAAATGAAAATATGAGTT+GGG | + | tig0023498:47584-47603 | Msa1409270:intron | 25.0% |
| ! | GATGAGAATTCATTGTTAAA+GGG | - | tig0023498:47621-47640 | None:intergenic | 25.0% |
| ! | AGATGAGAATTCATTGTTAA+AGG | - | tig0023498:47622-47641 | None:intergenic | 25.0% |
| ! | CATTTGTATGGTAATTTCAT+AGG | + | tig0023498:47962-47981 | Msa1409270:intron | 25.0% |
| !! | AATGCTATTTAAACATGACA+TGG | + | tig0023498:48644-48663 | Msa1409270:CDS | 25.0% |
| ! | GTATATTTCAGCGAAATAAA+AGG | - | tig0023498:48688-48707 | None:intergenic | 25.0% |
| ! | AAAAAAGTAATAGAGAAGCA+AGG | - | tig0023498:48755-48774 | None:intergenic | 25.0% |
| ! | CAATACTAGAACAATAATGT+GGG | - | tig0023498:48856-48875 | None:intergenic | 25.0% |
| !! | TATTTTGCTGAAGAATATTC+AGG | + | tig0023498:49278-49297 | Msa1409270:three_prime_UTR | 25.0% |
| GTAGAGTTGGAAAATTAGTT+GGG | - | tig0023498:44967-44986 | None:intergenic | 30.0% | |
| AGTAGAGTTGGAAAATTAGT+TGG | - | tig0023498:44968-44987 | None:intergenic | 30.0% | |
| TGTATCTATGTAGACATACA+TGG | - | tig0023498:44991-45010 | None:intergenic | 30.0% | |
| ATCAGTGATTCAACAACTAA+CGG | - | tig0023498:45083-45102 | None:intergenic | 30.0% | |
| AAATATGAACATCTCTGGTA+TGG | - | tig0023498:45127-45146 | None:intergenic | 30.0% | |
| !! | TTACTCATCTTTCTAGCTTA+TGG | + | tig0023498:45161-45180 | Msa1409270:CDS | 30.0% |
| CATCACAAAAGTTAGTTCAA+AGG | + | tig0023498:45415-45434 | Msa1409270:intron | 30.0% | |
| AAGTTCAGTTAACATGATAC+TGG | - | tig0023498:45560-45579 | None:intergenic | 30.0% | |
| !! | GTATGTTTTGAATTTTCAGG+AGG | + | tig0023498:45704-45723 | Msa1409270:intron | 30.0% |
| AATGATTACTGATGCAATTG+TGG | + | tig0023498:46029-46048 | Msa1409270:intron | 30.0% | |
| ! | TCAGCATTTCTGAGTTATTT+TGG | + | tig0023498:46119-46138 | Msa1409270:intron | 30.0% |
| ! | AAGATTATAGGGCACTTATT+TGG | + | tig0023498:46168-46187 | Msa1409270:intron | 30.0% |
| !!! | TCATATTTTGATTTCGGCTT+AGG | + | tig0023498:46371-46390 | Msa1409270:intron | 30.0% |
| !!! | CATATTTTGATTTCGGCTTA+GGG | + | tig0023498:46372-46391 | Msa1409270:intron | 30.0% |
| CTTAACAAGTTAAACTACAG+GGG | - | tig0023498:46529-46548 | None:intergenic | 30.0% | |
| ! | CATCAAATGAAGAGTTTTTG+AGG | - | tig0023498:46602-46621 | None:intergenic | 30.0% |
| CTCAAAAACTCTTCATTTGA+TGG | + | tig0023498:46600-46619 | Msa1409270:intron | 30.0% | |
| TGATGGTTGACTATCATTTA+TGG | + | tig0023498:46617-46636 | Msa1409270:intron | 30.0% | |
| GATGGTTGACTATCATTTAT+GGG | + | tig0023498:46618-46637 | Msa1409270:intron | 30.0% | |
| !!! | TGCCTTTTTTAACACCATTT+GGG | + | tig0023498:46663-46682 | Msa1409270:intron | 30.0% |
| ! | AACCCAAATGGTGTTAAAAA+AGG | - | tig0023498:46668-46687 | None:intergenic | 30.0% |
| CGTATAATGTAAAACCCAAA+TGG | - | tig0023498:46680-46699 | None:intergenic | 30.0% | |
| ACATTATACGATTGTGTATG+TGG | + | tig0023498:46690-46709 | Msa1409270:intron | 30.0% | |
| !! | GGTTTTGTGCTTCTATATTA+TGG | + | tig0023498:46805-46824 | Msa1409270:CDS | 30.0% |
| ATAGATAACAATTTCCACGA+AGG | + | tig0023498:46959-46978 | Msa1409270:CDS | 30.0% | |
| AAACCTGTATTGCAGTTTAT+TGG | + | tig0023498:47138-47157 | Msa1409270:intron | 30.0% | |
| TTTCCAATAAACTGCAATAC+AGG | - | tig0023498:47144-47163 | None:intergenic | 30.0% | |
| ! | CTAAATTTGGACCAAGTTTT+CGG | - | tig0023498:47361-47380 | None:intergenic | 30.0% |
| AAACAATAAAGTTGTGCCAT+TGG | - | tig0023498:47728-47747 | None:intergenic | 30.0% | |
| TAATGTGCTTTCTGCATAAA+CGG | + | tig0023498:47785-47804 | Msa1409270:CDS | 30.0% | |
| TGATCTACATAGAGACTTAA+GGG | - | tig0023498:47869-47888 | None:intergenic | 30.0% | |
| TAGACCTGAATATGCTATAA+GGG | - | tig0023498:47935-47954 | None:intergenic | 30.0% | |
| ACAAACATTACAAAGTGGAT+AGG | - | tig0023498:48049-48068 | None:intergenic | 30.0% | |
| CATCAACAAACATTACAAAG+TGG | - | tig0023498:48054-48073 | None:intergenic | 30.0% | |
| TTGATGAAATACTTCTTCAC+AGG | + | tig0023498:48068-48087 | Msa1409270:intron | 30.0% | |
| TGATGAAATACTTCTTCACA+GGG | + | tig0023498:48069-48088 | Msa1409270:intron | 30.0% | |
| !! | TGGAATAGTAAGTATTGACA+TGG | + | tig0023498:48174-48193 | Msa1409270:intron | 30.0% |
| !!! | ACTTATTTTGGCTGCTTTAT+TGG | + | tig0023498:48575-48594 | Msa1409270:CDS | 30.0% |
| !!! | CTTATTTTGGCTGCTTTATT+GGG | + | tig0023498:48576-48595 | Msa1409270:CDS | 30.0% |
| ! | GCAAGGCATAATTTGAATTT+TGG | - | tig0023498:48715-48734 | None:intergenic | 30.0% |
| !!! | GCTTCTCTATTACTTTTTTG+AGG | + | tig0023498:48756-48775 | Msa1409270:intron | 30.0% |
| GCAATACTAGAACAATAATG+TGG | - | tig0023498:48857-48876 | None:intergenic | 30.0% | |
| AGGTGATTAAGAAATGAATC+AGG | - | tig0023498:48892-48911 | None:intergenic | 30.0% | |
| AGAGATATTTGGAAAAGAGA+AGG | - | tig0023498:48912-48931 | None:intergenic | 30.0% | |
| !!! | GCATAGTCATTTTTCCTATA+CGG | + | tig0023498:49183-49202 | Msa1409270:three_prime_UTR | 30.0% |
| TGAATAATCACAGAAGCCAT+TGG | - | tig0023498:45044-45063 | None:intergenic | 35.0% | |
| GCTCAAAATATGAACATCTC+TGG | - | tig0023498:45132-45151 | None:intergenic | 35.0% | |
| TTGTGTCAAATGTCTGTCAA+AGG | + | tig0023498:45292-45311 | Msa1409270:intron | 35.0% | |
| AAATGTCTGTCAAAGGATCA+GGG | + | tig0023498:45299-45318 | Msa1409270:intron | 35.0% | |
| TCGGTTTAAAGATCACAATG+TGG | - | tig0023498:45535-45554 | None:intergenic | 35.0% | |
| AGTTAACATGATACTGGAGT+CGG | - | tig0023498:45554-45573 | None:intergenic | 35.0% | |
| ATTTATACATCCAACAGTCC+AGG | + | tig0023498:45599-45618 | Msa1409270:intron | 35.0% | |
| !! | TGTTTTGAATTTTCAGGAGG+AGG | + | tig0023498:45707-45726 | Msa1409270:intron | 35.0% |
| !! | AATTTTCAGGAGGAGGATTT+GGG | + | tig0023498:45714-45733 | Msa1409270:intron | 35.0% |
| !!! | TTCTGTTTTTGCTTCTTTGG+TGG | + | tig0023498:45779-45798 | Msa1409270:CDS | 35.0% |
| ! | TTCTGGTTATTGGTTATACC+TGG | + | tig0023498:45842-45861 | Msa1409270:CDS | 35.0% |
| ! | TTCAAGGAAGTGCAAAACTA+AGG | - | tig0023498:45994-46013 | None:intergenic | 35.0% |
| CCAATCCTTCATGGAATATA+AGG | - | tig0023498:46506-46525 | None:intergenic | 35.0% | |
| CCTTATATTCCATGAAGGAT+TGG | + | tig0023498:46503-46522 | Msa1409270:intron | 35.0% | |
| !!! | CTGCCTTTTTTAACACCATT+TGG | + | tig0023498:46662-46681 | Msa1409270:intron | 35.0% |
| ACTGTTATGCAGGTATACAT+TGG | + | tig0023498:46761-46780 | Msa1409270:intron | 35.0% | |
| TGTGCTTCTATATTATGGGT+TGG | + | tig0023498:46810-46829 | Msa1409270:CDS | 35.0% | |
| !! | TTCTATATTATGGGTTGGAC+AGG | + | tig0023498:46815-46834 | Msa1409270:CDS | 35.0% |
| GAAGACTACTGACAATATGA+AGG | - | tig0023498:46870-46889 | None:intergenic | 35.0% | |
| ATCGAAGATCAGTGAAGATA+TGG | - | tig0023498:46892-46911 | None:intergenic | 35.0% | |
| TTCATGATTGACCGAAAACT+TGG | + | tig0023498:47347-47366 | Msa1409270:intron | 35.0% | |
| ! | ATTTGCTACAATCCATGTTG+TGG | + | tig0023498:47429-47448 | Msa1409270:intron | 35.0% |
| AAACAGTTGTAGACTTGTAG+TGG | + | tig0023498:47490-47509 | Msa1409270:intron | 35.0% | |
| ATTTCGTTTCTCATCACTGT+AGG | + | tig0023498:47693-47712 | Msa1409270:intron | 35.0% | |
| ! | TTCCTTTTCGTTATGACCTT+TGG | + | tig0023498:47754-47773 | Msa1409270:CDS | 35.0% |
| GCACATTAATATTGCACCAA+AGG | - | tig0023498:47773-47792 | None:intergenic | 35.0% | |
| AATGTGCTTTCTGCATAAAC+GGG | + | tig0023498:47786-47805 | Msa1409270:CDS | 35.0% | |
| GTGATCTACATAGAGACTTA+AGG | - | tig0023498:47870-47889 | None:intergenic | 35.0% | |
| ATACCCCTTATAGCATATTC+AGG | + | tig0023498:47928-47947 | Msa1409270:intron | 35.0% | |
| AGACCTGAATATGCTATAAG+GGG | - | tig0023498:47934-47953 | None:intergenic | 35.0% | |
| GTAGACCTGAATATGCTATA+AGG | - | tig0023498:47936-47955 | None:intergenic | 35.0% | |
| TCCTCATGATCTTCCAATAA+TGG | + | tig0023498:48000-48019 | Msa1409270:intron | 35.0% | |
| ACCATTATTGGAAGATCATG+AGG | - | tig0023498:48004-48023 | None:intergenic | 35.0% | |
| GGAAAGAAAACAAGAACTCA+GGG | - | tig0023498:48028-48047 | None:intergenic | 35.0% | |
| AGGAAAGAAAACAAGAACTC+AGG | - | tig0023498:48029-48048 | None:intergenic | 35.0% | |
| TATGTTGTAACTCCAGCAAT+TGG | + | tig0023498:48106-48125 | Msa1409270:CDS | 35.0% | |
| GTATTGCAATGGCAGTATAT+GGG | + | tig0023498:48143-48162 | Msa1409270:CDS | 35.0% | |
| TATTGCAATGGCAGTATATG+GGG | + | tig0023498:48144-48163 | Msa1409270:CDS | 35.0% | |
| AATGCAAAACTGTAGTTCCT+TGG | + | tig0023498:48197-48216 | Msa1409270:intron | 35.0% | |
| ATGCAAAACTGTAGTTCCTT+GGG | + | tig0023498:48198-48217 | Msa1409270:intron | 35.0% | |
| TTAAATATGCCAGTGTTCTC+TGG | + | tig0023498:48315-48334 | Msa1409270:intron | 35.0% | |
| TCTTACTTCTGCTAGATTTC+AGG | + | tig0023498:48419-48438 | Msa1409270:CDS | 35.0% | |
| TTCGTAACATTCCTGTTGTT+TGG | + | tig0023498:48442-48461 | Msa1409270:intron | 35.0% | |
| TAATGTACCAACAAATCCAC+TGG | - | tig0023498:48550-48569 | None:intergenic | 35.0% | |
| TTTATAATACTTTGCGGTGC+AGG | + | tig0023498:48949-48968 | Msa1409270:intron | 35.0% | |
| ! | CTTTTGCACAGCTAAAGATA+TGG | + | tig0023498:48978-48997 | Msa1409270:CDS | 35.0% |
| ! | AATTGCTACGGTGTTCTTTT+TGG | + | tig0023498:49012-49031 | Msa1409270:CDS | 35.0% |
| !!! | TGTCACTCTGCAGTTTTTTA+TGG | + | tig0023498:49089-49108 | Msa1409270:CDS | 35.0% |
| !!! | ACTCTGCAGTTTTTTATGGT+TGG | + | tig0023498:49093-49112 | Msa1409270:CDS | 35.0% |
| !!! | TTTTTTATGGTTGGCTCTCA+AGG | + | tig0023498:49102-49121 | Msa1409270:CDS | 35.0% |
| ACATTAAATTCACTCACTGG+TGG | - | tig0023498:49149-49168 | None:intergenic | 35.0% | |
| GCAACATTAAATTCACTCAC+TGG | - | tig0023498:49152-49171 | None:intergenic | 35.0% | |
| TGTACACTTCATTCAACTGA+AGG | - | tig0023498:49216-49235 | None:intergenic | 35.0% | |
| AGACATACATGGAGTAGAGT+TGG | - | tig0023498:44980-44999 | None:intergenic | 40.0% | |
| GAACTGAGAACTTGAACCAA+TGG | + | tig0023498:45025-45044 | Msa1409270:exon | 40.0% | |
| ! | TCTCTGGTATGGCTTTTATG+CGG | - | tig0023498:45116-45135 | None:intergenic | 40.0% |
| CAAATGTCTGTCAAAGGATC+AGG | + | tig0023498:45298-45317 | Msa1409270:intron | 40.0% | |
| ! | GCAACATAGAAATTGGTCTC+AGG | - | tig0023498:45352-45371 | None:intergenic | 40.0% |
| ACAACCAACAACCTAGAAAC+CGG | + | tig0023498:45462-45481 | Msa1409270:intron | 40.0% | |
| ATGTTCAATTCCTGGACTGT+TGG | - | tig0023498:45612-45631 | None:intergenic | 40.0% | |
| ACAGTCCAGGAATTGAACAT+TGG | + | tig0023498:45612-45631 | Msa1409270:intron | 40.0% | |
| AGTCTCCAATGTTCAATTCC+TGG | - | tig0023498:45620-45639 | None:intergenic | 40.0% | |
| ATTGTGAATTTGGAGGCTAG+TGG | + | tig0023498:45672-45691 | Msa1409270:intron | 40.0% | |
| !! | GAATTTTCAGGAGGAGGATT+TGG | + | tig0023498:45713-45732 | Msa1409270:intron | 40.0% |
| !!! | TTTTTGCTTCTTTGGTGGTG+CGG | + | tig0023498:45784-45803 | Msa1409270:CDS | 40.0% |
| ! | TCCAAGAATGCTTTGATGGT+TGG | + | tig0023498:45816-45835 | Msa1409270:CDS | 40.0% |
| ! | TCCAACCATCAAAGCATTCT+TGG | - | tig0023498:45820-45839 | None:intergenic | 40.0% |
| ! | TGGTTGGAACTTCTGGTTAT+TGG | + | tig0023498:45832-45851 | Msa1409270:CDS | 40.0% |
| !!! | ATTTTGATTTCGGCTTAGGG+TGG | + | tig0023498:46375-46394 | Msa1409270:intron | 40.0% |
| !! | ATGCAGGTATACATTGGTTC+CGG | + | tig0023498:46767-46786 | Msa1409270:intron | 40.0% |
| CTGACAATATGAAGGAACTG+TGG | - | tig0023498:46862-46881 | None:intergenic | 40.0% | |
| AGTTAGATATGTTCCCTGAC+AGG | - | tig0023498:46918-46937 | None:intergenic | 40.0% | |
| ! | GCAGTAATTGGTGACTTCAA+CGG | + | tig0023498:46983-47002 | Msa1409270:CDS | 40.0% |
| ACATTTGCTCTACTCAGTGA+TGG | + | tig0023498:47171-47190 | Msa1409270:CDS | 40.0% | |
| CATTTGCTCTACTCAGTGAT+GGG | + | tig0023498:47172-47191 | Msa1409270:CDS | 40.0% | |
| TCTTGGTTGGCAATTACGAA+TGG | + | tig0023498:47289-47308 | Msa1409270:intron | 40.0% | |
| ! | TTGTAGTGGTTTGCCAACAA+AGG | + | tig0023498:47504-47523 | Msa1409270:intron | 40.0% |
| CTAGGTGTTTGCTCAATGTT+TGG | + | tig0023498:47528-47547 | Msa1409270:intron | 40.0% | |
| CACCAAAGGTCATAACGAAA+AGG | - | tig0023498:47759-47778 | None:intergenic | 40.0% | |
| ATGTGCTTTCTGCATAAACG+GGG | + | tig0023498:47787-47806 | Msa1409270:CDS | 40.0% | |
| TAAACGGGGTGATAATAGCA+AGG | + | tig0023498:47801-47820 | Msa1409270:CDS | 40.0% | |
| AAACGGGGTGATAATAGCAA+GGG | + | tig0023498:47802-47821 | Msa1409270:CDS | 40.0% | |
| GTCTCTATGTAGATCACTCA+CGG | + | tig0023498:47873-47892 | Msa1409270:intron | 40.0% | |
| TCTCTATGTAGATCACTCAC+GGG | + | tig0023498:47874-47893 | Msa1409270:intron | 40.0% | |
| GTCTACAACACGCATTTGTA+TGG | + | tig0023498:47950-47969 | Msa1409270:CDS | 40.0% | |
| AGAACTCAGGGAACCATTAT+TGG | - | tig0023498:48016-48035 | None:intergenic | 40.0% | |
| TGAAATACTTCTTCACAGGG+CGG | + | tig0023498:48072-48091 | Msa1409270:intron | 40.0% | |
| TGCTGGAGTTACAACATACT+TGG | - | tig0023498:48104-48123 | None:intergenic | 40.0% | |
| !! | TTCTGGTGTTGGTATTGCAA+TGG | + | tig0023498:48132-48151 | Msa1409270:CDS | 40.0% |
| GGTATTGCAATGGCAGTATA+TGG | + | tig0023498:48142-48161 | Msa1409270:CDS | 40.0% | |
| !!! | TTCTTTTGGAGCTTTTGCTC+AGG | + | tig0023498:48384-48403 | Msa1409270:CDS | 40.0% |
| ATATACGTCAGCCAAACAAC+AGG | - | tig0023498:48456-48475 | None:intergenic | 40.0% | |
| ! | AGCATATCCAGTGGATTTGT+TGG | + | tig0023498:48540-48559 | Msa1409270:intron | 40.0% |
| CAGCGAAATAAAAGGGTAGA+TGG | - | tig0023498:48680-48699 | None:intergenic | 40.0% | |
| TAGCATGTTAGCACTTAGCA+AGG | - | tig0023498:48732-48751 | None:intergenic | 40.0% | |
| ACTGCTTGGAACGAAATGTA+CGG | - | tig0023498:49040-49059 | None:intergenic | 40.0% | |
| TTCGTTCCAAGCAGTTATCA+TGG | + | tig0023498:49045-49064 | Msa1409270:CDS | 40.0% | |
| ACATGACCATGATAACTGCT+TGG | - | tig0023498:49054-49073 | None:intergenic | 40.0% | |
| CACACGCTAGACAATGTGAT+TGG | - | tig0023498:45328-45347 | None:intergenic | 45.0% | |
| TCTCAATTGCTCCGGTTTCT+AGG | - | tig0023498:45476-45495 | None:intergenic | 45.0% | |
| ! | ATCTGGAGTCTCAATTGCTC+CGG | - | tig0023498:45484-45503 | None:intergenic | 45.0% |
| ATTTGGGTACGACTTCGCTT+GGG | + | tig0023498:45730-45749 | Msa1409270:CDS | 45.0% | |
| CGGATCCAAGAATGCTTTGA+TGG | + | tig0023498:45812-45831 | Msa1409270:CDS | 45.0% | |
| ! | GCTTTGATGGTTGGAACTTC+TGG | + | tig0023498:45825-45844 | Msa1409270:CDS | 45.0% |
| CTGCAAACTTGAAGCCCAAT+TGG | + | tig0023498:45865-45884 | Msa1409270:CDS | 45.0% | |
| CGCACTTGCAGTTACCAATT+GGG | - | tig0023498:45882-45901 | None:intergenic | 45.0% | |
| CCTGCATAACAGTCACTCAA+TGG | - | tig0023498:46754-46773 | None:intergenic | 45.0% | |
| CCATTGAGTGACTGTTATGC+AGG | + | tig0023498:46751-46770 | Msa1409270:intron | 45.0% | |
| TTCCGGCTTCTGTGTATCTT+GGG | + | tig0023498:46784-46803 | Msa1409270:CDS | 45.0% | |
| AACCCAAGATACACAGAAGC+CGG | - | tig0023498:46789-46808 | None:intergenic | 45.0% | |
| TGATCTTCGATTGACCTGTC+AGG | + | tig0023498:46901-46920 | Msa1409270:intron | 45.0% | |
| GATCTTCGATTGACCTGTCA+GGG | + | tig0023498:46902-46921 | Msa1409270:intron | 45.0% | |
| ! | TTCCACGAAGGTGCAGTAAT+TGG | + | tig0023498:46971-46990 | Msa1409270:CDS | 45.0% |
| TGACTTCAACGGAGAGTTCT+GGG | + | tig0023498:46994-47013 | Msa1409270:CDS | 45.0% | |
| GGGTGTATACACACTTCATC+AGG | + | tig0023498:47015-47034 | Msa1409270:CDS | 45.0% | |
| TTTCCATGTTTACGCGCTCT+TGG | + | tig0023498:47272-47291 | Msa1409270:intron | 45.0% | |
| ACTTGGTCATTGCCACAACA+TGG | - | tig0023498:47444-47463 | None:intergenic | 45.0% | |
| ! | TGGTTTGCCAACAAAGGTCT+AGG | + | tig0023498:47510-47529 | Msa1409270:intron | 45.0% |
| GCAAACACCTAGACCTTTGT+TGG | - | tig0023498:47520-47539 | None:intergenic | 45.0% | |
| TCGTTTCTCATCACTGTAGG+AGG | + | tig0023498:47696-47715 | Msa1409270:intron | 45.0% | |
| CGTTTCTCATCACTGTAGGA+GGG | + | tig0023498:47697-47716 | Msa1409270:intron | 45.0% | |
| CAAGGGAGGATACAAGCATT+TGG | + | tig0023498:47819-47838 | Msa1409270:CDS | 45.0% | |
| GGATACAAGCATTTGGATGC+CGG | + | tig0023498:47826-47845 | Msa1409270:CDS | 45.0% | |
| ! | ACTCCAGCAATTGGTGTTTC+TGG | + | tig0023498:48115-48134 | Msa1409270:CDS | 45.0% |
| ACACCAGAAACACCAATTGC+TGG | - | tig0023498:48121-48140 | None:intergenic | 45.0% | |
| !! | GCAATTGGTGTTTCTGGTGT+TGG | + | tig0023498:48121-48140 | Msa1409270:CDS | 45.0% |
| ! | GCAGTATATGGGGCTTTTGA+TGG | + | tig0023498:48154-48173 | Msa1409270:CDS | 45.0% |
| CAAAACTGTAGTTCCTTGGG+TGG | + | tig0023498:48201-48220 | Msa1409270:intron | 45.0% | |
| TTCTGATGCAGCATATCCAG+TGG | + | tig0023498:48531-48550 | Msa1409270:intron | 45.0% | |
| ! | TTGGCTGCTTTATTGGGCAT+TGG | + | tig0023498:48582-48601 | Msa1409270:CDS | 45.0% |
| !! | GCTTTATTGGGCATTGGTGA+TGG | + | tig0023498:48588-48607 | Msa1409270:CDS | 45.0% |
| ACGCAGCTCAATGCTTTACT+AGG | + | tig0023498:48621-48640 | Msa1409270:CDS | 45.0% | |
| TAATACTTTGCGGTGCAGGA+AGG | + | tig0023498:48953-48972 | Msa1409270:intron | 45.0% | |
| AATACTTTGCGGTGCAGGAA+GGG | + | tig0023498:48954-48973 | Msa1409270:intron | 45.0% | |
| TGCTTGGAACGAAATGTACG+GGG | - | tig0023498:49038-49057 | None:intergenic | 45.0% | |
| CTGCTTGGAACGAAATGTAC+GGG | - | tig0023498:49039-49058 | None:intergenic | 45.0% | |
| ! | TTTATGGTTGGCTCTCAAGG+TGG | + | tig0023498:49105-49124 | Msa1409270:CDS | 45.0% |
| ! | TTATGGTTGGCTCTCAAGGT+GGG | + | tig0023498:49106-49125 | Msa1409270:CDS | 45.0% |
| AATTCACTCACTGGTGGAGA+GGG | - | tig0023498:49143-49162 | None:intergenic | 45.0% | |
| AAATTCACTCACTGGTGGAG+AGG | - | tig0023498:49144-49163 | None:intergenic | 45.0% | |
| CTGAAGGAAATGTGCCGTAT+AGG | - | tig0023498:49200-49219 | None:intergenic | 45.0% | |
| ! | TGCTCCGGTTTCTAGGTTGT+TGG | - | tig0023498:45469-45488 | None:intergenic | 50.0% |
| GATTTGGGTACGACTTCGCT+TGG | + | tig0023498:45729-45748 | Msa1409270:CDS | 50.0% | |
| !! | TCTTTGGTGGTGCGGATTCT+CGG | + | tig0023498:45792-45811 | Msa1409270:CDS | 50.0% |
| GCGCACTTGCAGTTACCAAT+TGG | - | tig0023498:45883-45902 | None:intergenic | 50.0% | |
| ACCTGACAGCAGTGACTACA+TGG | + | tig0023498:46247-46266 | Msa1409270:intron | 50.0% | |
| TCCATGTAGTCACTGCTGTC+AGG | - | tig0023498:46251-46270 | None:intergenic | 50.0% | |
| TGACAGCAGTGACTACATGG+AGG | + | tig0023498:46250-46269 | Msa1409270:intron | 50.0% | |
| GTTCCGGCTTCTGTGTATCT+TGG | + | tig0023498:46783-46802 | Msa1409270:CDS | 50.0% | |
| TATAGCATGACTGCGTGCAG+TGG | - | tig0023498:46942-46961 | None:intergenic | 50.0% | |
| CACCAATTACTGCACCTTCG+TGG | - | tig0023498:46976-46995 | None:intergenic | 50.0% | |
| GTGACTTCAACGGAGAGTTC+TGG | + | tig0023498:46993-47012 | Msa1409270:CDS | 50.0% | |
| GACTTCAACGGAGAGTTCTG+GGG | + | tig0023498:46995-47014 | Msa1409270:CDS | 50.0% | |
| ! | CAACCAAGAGCGCGTAAACA+TGG | - | tig0023498:47278-47297 | None:intergenic | 50.0% |
| CATGTTTACGCGCTCTTGGT+TGG | + | tig0023498:47276-47295 | Msa1409270:intron | 50.0% | |
| !! | CTGTAGGAGGGAAGTACCAA+TGG | + | tig0023498:47709-47728 | Msa1409270:intron | 50.0% |
| AACTGTAGTTCCTTGGGTGG+TGG | + | tig0023498:48204-48223 | Msa1409270:intron | 50.0% | |
| ! | CACTTTTGAACCACCACCCA+AGG | - | tig0023498:48217-48236 | None:intergenic | 50.0% |
| ATACTTTGCGGTGCAGGAAG+GGG | + | tig0023498:48955-48974 | Msa1409270:intron | 50.0% | |
| ! | GCAGAGCGCTACAATTGCTA+CGG | + | tig0023498:49000-49019 | Msa1409270:CDS | 50.0% |
| ! | TATGGTTGGCTCTCAAGGTG+GGG | + | tig0023498:49107-49126 | Msa1409270:CDS | 50.0% |
| CTAACGGCGTTTCTTCGTCG+CGG | - | tig0023498:45067-45086 | None:intergenic | 55.0% | |
| AGACTCCAGATGACGTAGCG+TGG | + | tig0023498:45493-45512 | Msa1409270:intron | 55.0% | |
| GACTCCAGATGACGTAGCGT+GGG | + | tig0023498:45494-45513 | Msa1409270:intron | 55.0% | |
| ATGACCCACGCTACGTCATC+TGG | - | tig0023498:45501-45520 | None:intergenic | 55.0% | |
| ! | TGGGCTTCAAGTTTGCAGCC+AGG | - | tig0023498:45863-45882 | None:intergenic | 55.0% |
| GCAGTGACTACATGGAGGCT+TGG | + | tig0023498:46255-46274 | Msa1409270:intron | 55.0% | |
| CTACAGGGGCCAATCCTTCA+TGG | - | tig0023498:46515-46534 | None:intergenic | 55.0% | |
| !! | TGCTCTACTCAGTGATGGGC+AGG | + | tig0023498:47176-47195 | Msa1409270:CDS | 55.0% |
| !! | CTCAGTGATGGGCAGGTATG+TGG | + | tig0023498:47183-47202 | Msa1409270:intron | 55.0% |
| !! | AGTGATGGGCAGGTATGTGG+TGG | + | tig0023498:47186-47205 | Msa1409270:intron | 55.0% |
| CGGGGTGATAATAGCAAGGG+AGG | + | tig0023498:47805-47824 | Msa1409270:CDS | 55.0% | |
| GGACTTTCATTCACCAGCGC+CGG | - | tig0023498:47848-47867 | None:intergenic | 55.0% | |
| GTCGCTGGTCGTCTTACTTC+TGG | + | tig0023498:48337-48356 | Msa1409270:CDS | 55.0% | |
| AAGCATTTGGATGCCGGCGC+TGG | + | tig0023498:47832-47851 | Msa1409270:CDS | 60.0% | |
| TGCCAGTGTTCTCTGGTCGC+TGG | + | tig0023498:48322-48341 | Msa1409270:intron | 60.0% | |
| GACCAGCGACCAGAGAACAC+TGG | - | tig0023498:48327-48346 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023498 | gene | 44852 | 49333 | 44852 | ID=Msa1409270;Name=Msa1409270 |
| tig0023498 | mRNA | 44852 | 49333 | 44852 | ID=Msa1409270-mRNA-1;Parent=Msa1409270;Name=Msa1409270-mRNA-1;_AED=0.33;_eAED=0.33;_QI=192|0.9|0.81|1|1|1|11|174|412 |
| tig0023498 | exon | 44852 | 45217 | 44852 | ID=Msa1409270-mRNA-1:exon:25948;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 45723 | 45886 | 45723 | ID=Msa1409270-mRNA-1:exon:25949;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 46773 | 46836 | 46773 | ID=Msa1409270-mRNA-1:exon:25950;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 46923 | 47036 | 46923 | ID=Msa1409270-mRNA-1:exon:25951;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 47153 | 47197 | 47153 | ID=Msa1409270-mRNA-1:exon:25952;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 47715 | 47853 | 47715 | ID=Msa1409270-mRNA-1:exon:25953;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 47950 | 47971 | 47950 | ID=Msa1409270-mRNA-1:exon:25954;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 48090 | 48180 | 48090 | ID=Msa1409270-mRNA-1:exon:25955;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 48328 | 48440 | 48328 | ID=Msa1409270-mRNA-1:exon:25956;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 48542 | 48665 | 48542 | ID=Msa1409270-mRNA-1:exon:25957;Parent=Msa1409270-mRNA-1 |
| tig0023498 | exon | 48971 | 49333 | 48971 | ID=Msa1409270-mRNA-1:exon:25958;Parent=Msa1409270-mRNA-1 |
| tig0023498 | five_prime_UTR | 44852 | 45043 | 44852 | ID=Msa1409270-mRNA-1:five_prime_utr;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 45044 | 45217 | 45044 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 45723 | 45886 | 45723 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 46773 | 46836 | 46773 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 46923 | 47036 | 46923 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 47153 | 47197 | 47153 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 47715 | 47853 | 47715 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 47950 | 47971 | 47950 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 48090 | 48180 | 48090 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 48328 | 48440 | 48328 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 48542 | 48665 | 48542 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | CDS | 48971 | 49159 | 48971 | ID=Msa1409270-mRNA-1:cds;Parent=Msa1409270-mRNA-1 |
| tig0023498 | three_prime_UTR | 49160 | 49333 | 49160 | ID=Msa1409270-mRNA-1:three_prime_utr;Parent=Msa1409270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
