Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385820 | XP_003625505.1 | 87.892 | 446 | 19 | 2 | 1 | 411 | 1 | 446 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385820 | sp|Q94AA1|UN933_ARATH | 62.228 | 413 | 122 | 5 | 7 | 387 | 4 | 414 | 1.37e-170 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385820 | G7L0K8 | 87.892 | 446 | 19 | 2 | 1 | 411 | 1 | 446 | 0.0 | 760 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104360 | Msa1385820 | 0.813993 | 1.932263e-51 | -8.615850e-47 |
| Msa1385820 | Msa1409270 | 0.991409 | 1.695016e-187 | -8.615850e-47 |
| Msa1385820 | Msa1437870 | 0.885862 | 5.639132e-72 | -8.615850e-47 |
| Msa1123840 | Msa1385820 | 0.922649 | 7.468520e-89 | -8.615850e-47 |
| Msa0563140 | Msa1385820 | 0.801566 | 8.474779e-49 | -8.615850e-47 |
| Msa0600820 | Msa1385820 | 0.808516 | 2.980554e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385820 | MtrunA17_Chr7g0262981 | 87.892 | 446 | 19 | 2 | 1 | 411 | 1 | 446 | 0.0 | 760 |
| Msa1385820 | MtrunA17_Chr7g0262971 | 82.658 | 444 | 45 | 1 | 1 | 412 | 1 | 444 | 0.0 | 718 |
| Msa1385820 | MtrunA17_Chr7g0262951 | 71.364 | 440 | 87 | 3 | 10 | 410 | 2 | 441 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385820 | AT3G09470.2 | 62.558 | 430 | 127 | 5 | 7 | 404 | 4 | 431 | 1.88e-180 | 509 |
Find 97 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTGTATTGCAGTTTAT+TGG | 0.159343 | tig0020776:+88537 | Msa1385820:intron |
| TTACTCATCTTTCTAGCTTA+TGG | 0.165736 | tig0020776:+86559 | Msa1385820:CDS |
| TACATTATATATACTTATTT+TGG | 0.171202 | tig0020776:+89962 | Msa1385820:CDS |
| TCTTACTTCTGCTAGATTTC+AGG | 0.182675 | tig0020776:+89818 | Msa1385820:CDS |
| GCTTTGATGGTTGGAACTTC+TGG | 0.243991 | tig0020776:+87223 | Msa1385820:CDS |
| ACTCCAGCAATTGGTGTTTC+TGG | 0.248058 | tig0020776:+89514 | Msa1385820:CDS |
| ATTACATCAATAGTTTCTTT+TGG | 0.283502 | tig0020776:+89769 | Msa1385820:CDS |
| GGTATTGCAATGGCAGTATA+TGG | 0.286764 | tig0020776:+89541 | Msa1385820:CDS |
| GTTCCGGCTTCTGTGTATCT+TGG | 0.288738 | tig0020776:+88181 | Msa1385820:CDS |
| TCCAACCATCAAAGCATTCT+TGG | 0.289790 | tig0020776:-87215 | None:intergenic |
| AATCTTGTCTTGTAAAGAAT+TGG | 0.293097 | tig0020776:-86269 | None:intergenic |
| TTCCACGAAGGTGCAGTAAT+TGG | 0.303941 | tig0020776:+88369 | Msa1385820:CDS |
| CGGATCCAAGAATGCTTTGA+TGG | 0.318222 | tig0020776:+87210 | Msa1385820:CDS |
| GTGACTTCAACGGAGAGTTC+TGG | 0.318467 | tig0020776:+88391 | Msa1385820:CDS |
| GTCGCTGGTCGTCTTACTTC+TGG | 0.328349 | tig0020776:+89736 | Msa1385820:CDS |
| TAATGTGCTTTCTGCATAAA+CGG | 0.336205 | tig0020776:+89184 | Msa1385820:CDS |
| TGGTTGGAACTTCTGGTTAT+TGG | 0.338454 | tig0020776:+87230 | Msa1385820:CDS |
| TCTTTGGTGGTGCGGATTCT+CGG | 0.346413 | tig0020776:+87190 | Msa1385820:CDS |
| CGCACTTGCAGTTACCAATT+GGG | 0.364795 | tig0020776:-87277 | None:intergenic |
| ATGCAGGTATACATTGGTTC+CGG | 0.390937 | tig0020776:+88165 | Msa1385820:intron |
| AATGTGCTTTCTGCATAAAC+GGG | 0.395329 | tig0020776:+89185 | Msa1385820:CDS |
| TGACTTCAACGGAGAGTTCT+GGG | 0.396002 | tig0020776:+88392 | Msa1385820:CDS |
| CTGAAGGAAATGTGCCGTAT+AGG | 0.399751 | tig0020776:-90596 | None:intergenic |
| CTGCAAACTTGAAGCCCAAT+TGG | 0.400523 | tig0020776:+87263 | Msa1385820:CDS |
| AGTAGAGTTGGAAAATTAGT+TGG | 0.400722 | tig0020776:-86363 | None:intergenic |
| TTCCGGCTTCTGTGTATCTT+GGG | 0.404081 | tig0020776:+88182 | Msa1385820:CDS |
| ACGCAGCTCAATGCTTTACT+AGG | 0.408249 | tig0020776:+90020 | Msa1385820:CDS |
| TTAAATATGCCAGTGTTCTC+TGG | 0.409023 | tig0020776:+89714 | Msa1385820:intron |
| AAAAGAAACTATTGATGTAA+TGG | 0.422422 | tig0020776:-89767 | None:intergenic |
| GCTTTATTGGGCATTGGTGA+TGG | 0.429288 | tig0020776:+89987 | Msa1385820:CDS |
| AGCATATCCAGTGGATTTGT+TGG | 0.430052 | tig0020776:+89939 | Msa1385820:intron |
| CAAGGGAGGATACAAGCATT+TGG | 0.433232 | tig0020776:+89218 | Msa1385820:CDS |
| TTCTATATTATGGGTTGGAC+AGG | 0.438750 | tig0020776:+88213 | Msa1385820:CDS |
| GTAGAGTTGGAAAATTAGTT+GGG | 0.440252 | tig0020776:-86362 | None:intergenic |
| GCAATTGGTGTTTCTGGTGT+TGG | 0.445627 | tig0020776:+89520 | Msa1385820:CDS |
| TCCAAGAATGCTTTGATGGT+TGG | 0.450947 | tig0020776:+87214 | Msa1385820:CDS |
| TGCTGGAGTTACAACATACT+TGG | 0.451971 | tig0020776:-89500 | None:intergenic |
| TTATGGTTGGCTCTCAAGGT+GGG | 0.452741 | tig0020776:+90505 | Msa1385820:CDS |
| AAGCATTTGGATGCCGGCGC+TGG | 0.452753 | tig0020776:+89231 | Msa1385820:CDS |
| GTCTACAACACGCATTTGTA+TGG | 0.454305 | tig0020776:+89349 | Msa1385820:CDS |
| TTCGTTCCAAGCAGTTATCA+TGG | 0.455355 | tig0020776:+90444 | Msa1385820:CDS |
| TTGGCTGCTTTATTGGGCAT+TGG | 0.459579 | tig0020776:+89981 | Msa1385820:CDS |
| ACACCAGAAACACCAATTGC+TGG | 0.459964 | tig0020776:-89517 | None:intergenic |
| GTATTGCAATGGCAGTATAT+GGG | 0.463221 | tig0020776:+89542 | Msa1385820:CDS |
| TGCTCTACTCAGTGATGGGC+AGG | 0.464947 | tig0020776:+88575 | Msa1385820:CDS |
| GATTTGGGTACGACTTCGCT+TGG | 0.480382 | tig0020776:+87127 | Msa1385820:CDS |
| TTCTGGTTATTGGTTATACC+TGG | 0.481480 | tig0020776:+87240 | Msa1385820:CDS |
| TATGTTGTAACTCCAGCAAT+TGG | 0.485973 | tig0020776:+89505 | Msa1385820:CDS |
| GCTCAAAATATGAACATCTC+TGG | 0.487925 | tig0020776:-86527 | None:intergenic |
| TGTGCTTCTATATTATGGGT+TGG | 0.496046 | tig0020776:+88208 | Msa1385820:CDS |
| CACCAATTACTGCACCTTCG+TGG | 0.497583 | tig0020776:-88371 | None:intergenic |
| AAATATGAACATCTCTGGTA+TGG | 0.497989 | tig0020776:-86522 | None:intergenic |
| TATGGTTGGCTCTCAAGGTG+GGG | 0.500881 | tig0020776:+90506 | Msa1385820:CDS |
| CACCAAAGGTCATAACGAAA+AGG | 0.505513 | tig0020776:-89155 | None:intergenic |
| ACATTTGCTCTACTCAGTGA+TGG | 0.507367 | tig0020776:+88570 | Msa1385820:CDS |
| ATTTGGGTACGACTTCGCTT+GGG | 0.510297 | tig0020776:+87128 | Msa1385820:CDS |
| CTGCTTGGAACGAAATGTAC+GGG | 0.512143 | tig0020776:-90435 | None:intergenic |
| TGTACACTTCATTCAACTGA+AGG | 0.514226 | tig0020776:-90612 | None:intergenic |
| GGATACAAGCATTTGGATGC+CGG | 0.516171 | tig0020776:+89225 | Msa1385820:CDS |
| GGGTGTATACACACTTCATC+AGG | 0.518181 | tig0020776:+88413 | Msa1385820:CDS |
| AACCCAAGATACACAGAAGC+CGG | 0.518246 | tig0020776:-88184 | None:intergenic |
| AAACAATAAAGTTGTGCCAT+TGG | 0.524098 | tig0020776:-89124 | None:intergenic |
| TGCCAGTGTTCTCTGGTCGC+TGG | 0.524130 | tig0020776:+89721 | Msa1385820:intron |
| TTTATGGTTGGCTCTCAAGG+TGG | 0.530407 | tig0020776:+90504 | Msa1385820:CDS |
| TGGGCTTCAAGTTTGCAGCC+AGG | 0.531249 | tig0020776:-87258 | None:intergenic |
| TAATGTACCAACAAATCCAC+TGG | 0.537543 | tig0020776:-89946 | None:intergenic |
| TTCTGGTGTTGGTATTGCAA+TGG | 0.544148 | tig0020776:+89531 | Msa1385820:CDS |
| AGACATACATGGAGTAGAGT+TGG | 0.544896 | tig0020776:-86375 | None:intergenic |
| GCACATTAATATTGCACCAA+AGG | 0.548234 | tig0020776:-89169 | None:intergenic |
| GCAACATTAAATTCACTCAC+TGG | 0.560043 | tig0020776:-90548 | None:intergenic |
| ACATGACCATGATAACTGCT+TGG | 0.560534 | tig0020776:-90450 | None:intergenic |
| ACTGCTTGGAACGAAATGTA+CGG | 0.561713 | tig0020776:-90436 | None:intergenic |
| GGACTTTCATTCACCAGCGC+CGG | 0.562462 | tig0020776:-89244 | None:intergenic |
| TATTGCAATGGCAGTATATG+GGG | 0.568621 | tig0020776:+89543 | Msa1385820:CDS |
| CATTTGCTCTACTCAGTGAT+GGG | 0.570849 | tig0020776:+88571 | Msa1385820:CDS |
| GAACTGAGAACTTGAACCAA+TGG | 0.576895 | tig0020776:+86423 | Msa1385820:exon |
| GCAGTAATTGGTGACTTCAA+CGG | 0.585247 | tig0020776:+88381 | Msa1385820:CDS |
| ACTGTTATGCAGGTATACAT+TGG | 0.590098 | tig0020776:+88159 | Msa1385820:intron |
| TGAATAATCACAGAAGCCAT+TGG | 0.592595 | tig0020776:-86439 | None:intergenic |
| AATTCACTCACTGGTGGAGA+GGG | 0.593392 | tig0020776:-90539 | None:intergenic |
| ATCAGTGATTCAACAACTAA+CGG | 0.599267 | tig0020776:-86478 | None:intergenic |
| TGTATCTATGTAGACATACA+TGG | 0.600352 | tig0020776:-86386 | None:intergenic |
| TATAGCATGACTGCGTGCAG+TGG | 0.601352 | tig0020776:-88337 | None:intergenic |
| CTGTAGGAGGGAAGTACCAA+TGG | 0.601368 | tig0020776:+89108 | Msa1385820:intron |
| AAATTCACTCACTGGTGGAG+AGG | 0.602947 | tig0020776:-90540 | None:intergenic |
| CGGGGTGATAATAGCAAGGG+AGG | 0.610044 | tig0020776:+89204 | Msa1385820:CDS |
| TAAACGGGGTGATAATAGCA+AGG | 0.610785 | tig0020776:+89200 | Msa1385820:CDS |
| TTCTGATGCAGCATATCCAG+TGG | 0.611801 | tig0020776:+89930 | Msa1385820:intron |
| ATGAAGCTAAAGAAATATTG+TGG | 0.614353 | tig0020776:-86307 | None:intergenic |
| GCAGAGCGCTACAATTGCTA+CGG | 0.636383 | tig0020776:+90399 | Msa1385820:CDS |
| ACATTAAATTCACTCACTGG+TGG | 0.641025 | tig0020776:-90545 | None:intergenic |
| GACTTCAACGGAGAGTTCTG+GGG | 0.657674 | tig0020776:+88393 | Msa1385820:CDS |
| AAACGGGGTGATAATAGCAA+GGG | 0.682006 | tig0020776:+89201 | Msa1385820:CDS |
| AATGCTATTTAAACATGACA+TGG | 0.693354 | tig0020776:+90043 | Msa1385820:CDS |
| TGCTTGGAACGAAATGTACG+GGG | 0.696058 | tig0020776:-90434 | None:intergenic |
| ATAGATAACAATTTCCACGA+AGG | 0.705993 | tig0020776:+88357 | Msa1385820:CDS |
| ATGTGCTTTCTGCATAAACG+GGG | 0.713089 | tig0020776:+89186 | Msa1385820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTTATTATTATTGTATT+TGG | + | tig0020776:86632-86651 | Msa1385820:intron | 10.0% |
| !!! | TTGATTTTAAATAAGATTAT+AGG | + | tig0020776:87554-87573 | Msa1385820:intron | 10.0% |
| !!! | TGATTTTAAATAAGATTATA+GGG | + | tig0020776:87555-87574 | Msa1385820:intron | 10.0% |
| !!! | TTTTTTTTTTTAAATAAGAC+TGG | + | tig0020776:88450-88469 | Msa1385820:intron | 10.0% |
| !!! | AGAATATTTTATATATTCTT+CGG | + | tig0020776:89064-89083 | Msa1385820:intron | 10.0% |
| !!! | TACATTATATATACTTATTT+TGG | + | tig0020776:89962-89981 | Msa1385820:CDS | 10.0% |
| !!! | ATCAAATTATTTAAGTTGTT+TGG | - | tig0020776:87052-87071 | None:intergenic | 15.0% |
| !! | AAATAATTTGATTGTGAATT+TGG | + | tig0020776:87060-87079 | Msa1385820:intron | 15.0% |
| !! | TATAGTAATTAATTATGTTC+TGG | + | tig0020776:87736-87755 | Msa1385820:intron | 15.0% |
| !! | ATAGTAATTAATTATGTTCT+GGG | + | tig0020776:87737-87756 | Msa1385820:intron | 15.0% |
| !!! | CATAAATCATATTTTGATTT+CGG | + | tig0020776:87763-87782 | Msa1385820:intron | 15.0% |
| !!! | TTTTTTGTTCTTATAGTATT+GGG | + | tig0020776:87796-87815 | Msa1385820:intron | 15.0% |
| !!! | TTTTTTCTTTAATAATCAAG+TGG | + | tig0020776:88642-88661 | Msa1385820:intron | 15.0% |
| !!! | TGTACAAACAAATTATTTTA+AGG | + | tig0020776:88963-88982 | Msa1385820:intron | 15.0% |
| !! | ATAATGATATAAGAGATATT+TGG | - | tig0020776:90322-90341 | None:intergenic | 15.0% |
| !! | ATTATTGTATTTGGATTATG+AGG | + | tig0020776:86641-86660 | Msa1385820:intron | 20.0% |
| !! | ATTTGACACAAATTTACTAA+TGG | - | tig0020776:86681-86700 | None:intergenic | 20.0% |
| !!! | ATTGTATGTTTTGAATTTTC+AGG | + | tig0020776:87099-87118 | Msa1385820:intron | 20.0% |
| !! | TGTATCTATCTTATTATTCA+AGG | - | tig0020776:87408-87427 | None:intergenic | 20.0% |
| !!! | TTCAATCAAAATGTTGATTA+TGG | - | tig0020776:87604-87623 | None:intergenic | 20.0% |
| !!! | GTTTTTTGTTCTTATAGTAT+TGG | + | tig0020776:87795-87814 | Msa1385820:intron | 20.0% |
| !!! | TTTTTGTTCTTATAGTATTG+GGG | + | tig0020776:87797-87816 | Msa1385820:intron | 20.0% |
| !!! | TGAATAATACTAGCTTATTA+TGG | + | tig0020776:88112-88131 | Msa1385820:intron | 20.0% |
| !! | ATTAAAACAACTTGAATACT+TGG | - | tig0020776:88860-88879 | None:intergenic | 20.0% |
| !! | AAAAGAAACTATTGATGTAA+TGG | - | tig0020776:89770-89789 | None:intergenic | 20.0% |
| !!! | ATTACATCAATAGTTTCTTT+TGG | + | tig0020776:89769-89788 | Msa1385820:CDS | 20.0% |
| !! | CAAAATGAAATTACATTCTA+AGG | - | tig0020776:89892-89911 | None:intergenic | 20.0% |
| !!! | CATTTTGCTTATATTTTCAT+TGG | + | tig0020776:89905-89924 | Msa1385820:intron | 20.0% |
| !! | TATATTTCAGCGAAATAAAA+GGG | - | tig0020776:90086-90105 | None:intergenic | 20.0% |
| !! | GTCAAATTTATAATACTTTG+CGG | + | tig0020776:90342-90361 | Msa1385820:intron | 20.0% |
| ! | AATCTTGTCTTGTAAAGAAT+TGG | - | tig0020776:86272-86291 | None:intergenic | 25.0% |
| ! | ATGAAGCTAAAGAAATATTG+TGG | - | tig0020776:86310-86329 | None:intergenic | 25.0% |
| ! | AAAGATTGCAACATAGAAAT+TGG | - | tig0020776:86757-86776 | None:intergenic | 25.0% |
| ! | GAGTTCAAGCTTATTTAATA+TGG | - | tig0020776:86794-86813 | None:intergenic | 25.0% |
| ! | ATGTATAAATATGTATGGAC+AGG | - | tig0020776:86987-87006 | None:intergenic | 25.0% |
| ! | GTTGGATGTATAAATATGTA+TGG | - | tig0020776:86992-87011 | None:intergenic | 25.0% |
| ! | TAATTTGATTGTGAATTTGG+AGG | + | tig0020776:87063-87082 | Msa1385820:intron | 25.0% |
| !!! | TTTTTCTGTTTTTGCTTCTT+TGG | + | tig0020776:87174-87193 | Msa1385820:CDS | 25.0% |
| ! | TATGAACTTATACTTTGGTA+GGG | - | tig0020776:87831-87850 | None:intergenic | 25.0% |
| ! | ATATGAACTTATACTTTGGT+AGG | - | tig0020776:87832-87851 | None:intergenic | 25.0% |
| ! | AAGCATATGAACTTATACTT+TGG | - | tig0020776:87836-87855 | None:intergenic | 25.0% |
| ! | ATTATCCTTATATTCCATGA+AGG | + | tig0020776:87896-87915 | Msa1385820:intron | 25.0% |
| ! | TCTTAACAAGTTAAACTACA+GGG | - | tig0020776:87928-87947 | None:intergenic | 25.0% |
| ! | ATCTTAACAAGTTAAACTAC+AGG | - | tig0020776:87929-87948 | None:intergenic | 25.0% |
| !!! | ATTTAGGTTTTGTTTTCTCT+AGG | - | tig0020776:87958-87977 | None:intergenic | 25.0% |
| !!! | TATATTGTTGTCGTTGATTT+AGG | - | tig0020776:87974-87993 | None:intergenic | 25.0% |
| !! | GTTTTGTGCTTCTATATTAT+GGG | + | tig0020776:88204-88223 | Msa1385820:CDS | 25.0% |
| !! | GTTTAAAGCTCAACTAAATT+TGG | - | tig0020776:88773-88792 | None:intergenic | 25.0% |
| ! | AAGGAAATGAAAATATGAGT+TGG | + | tig0020776:88982-89001 | Msa1385820:intron | 25.0% |
| ! | AGGAAATGAAAATATGAGTT+GGG | + | tig0020776:88983-89002 | Msa1385820:intron | 25.0% |
| ! | GATGAGAATTCATTGTTAAA+GGG | - | tig0020776:89020-89039 | None:intergenic | 25.0% |
| ! | AGATGAGAATTCATTGTTAA+AGG | - | tig0020776:89021-89040 | None:intergenic | 25.0% |
| ! | CATTTGTATGGTAATTTCAT+AGG | + | tig0020776:89361-89380 | Msa1385820:intron | 25.0% |
| !! | AATGCTATTTAAACATGACA+TGG | + | tig0020776:90043-90062 | Msa1385820:CDS | 25.0% |
| ! | GTATATTTCAGCGAAATAAA+AGG | - | tig0020776:90087-90106 | None:intergenic | 25.0% |
| ! | AAAAAAGTAATAGAGAAGCA+AGG | - | tig0020776:90154-90173 | None:intergenic | 25.0% |
| ! | CAATACTAGAACAATAATGT+GGG | - | tig0020776:90255-90274 | None:intergenic | 25.0% |
| !! | TATTTTGCTGAAGAATATTC+AGG | + | tig0020776:90677-90696 | Msa1385820:three_prime_UTR | 25.0% |
| GTAGAGTTGGAAAATTAGTT+GGG | - | tig0020776:86365-86384 | None:intergenic | 30.0% | |
| AGTAGAGTTGGAAAATTAGT+TGG | - | tig0020776:86366-86385 | None:intergenic | 30.0% | |
| TGTATCTATGTAGACATACA+TGG | - | tig0020776:86389-86408 | None:intergenic | 30.0% | |
| ATCAGTGATTCAACAACTAA+CGG | - | tig0020776:86481-86500 | None:intergenic | 30.0% | |
| AAATATGAACATCTCTGGTA+TGG | - | tig0020776:86525-86544 | None:intergenic | 30.0% | |
| !! | TTACTCATCTTTCTAGCTTA+TGG | + | tig0020776:86559-86578 | Msa1385820:CDS | 30.0% |
| CATCACAAAAGTTAGTTCAA+AGG | + | tig0020776:86813-86832 | Msa1385820:intron | 30.0% | |
| AAGTTCAGTTAACATGATAC+TGG | - | tig0020776:86958-86977 | None:intergenic | 30.0% | |
| !! | GTATGTTTTGAATTTTCAGG+AGG | + | tig0020776:87102-87121 | Msa1385820:intron | 30.0% |
| AATGATTACTGATGCAATTG+TGG | + | tig0020776:87427-87446 | Msa1385820:intron | 30.0% | |
| ! | TCAGCATTTCTGAGTTATTT+TGG | + | tig0020776:87517-87536 | Msa1385820:intron | 30.0% |
| ! | AAGATTATAGGGCACTTATT+TGG | + | tig0020776:87566-87585 | Msa1385820:intron | 30.0% |
| !!! | TCATATTTTGATTTCGGCTT+AGG | + | tig0020776:87769-87788 | Msa1385820:intron | 30.0% |
| !!! | CATATTTTGATTTCGGCTTA+GGG | + | tig0020776:87770-87789 | Msa1385820:intron | 30.0% |
| CTTAACAAGTTAAACTACAG+GGG | - | tig0020776:87927-87946 | None:intergenic | 30.0% | |
| ! | CATCAAATGAAGAGTTTTTG+AGG | - | tig0020776:88000-88019 | None:intergenic | 30.0% |
| CTCAAAAACTCTTCATTTGA+TGG | + | tig0020776:87998-88017 | Msa1385820:intron | 30.0% | |
| TGATGGTTGACTATCATTTA+TGG | + | tig0020776:88015-88034 | Msa1385820:intron | 30.0% | |
| GATGGTTGACTATCATTTAT+GGG | + | tig0020776:88016-88035 | Msa1385820:intron | 30.0% | |
| !!! | TGCCTTTTTTAACACCATTT+GGG | + | tig0020776:88061-88080 | Msa1385820:intron | 30.0% |
| ! | AACCCAAATGGTGTTAAAAA+AGG | - | tig0020776:88066-88085 | None:intergenic | 30.0% |
| CGTATAATGTAAAACCCAAA+TGG | - | tig0020776:88078-88097 | None:intergenic | 30.0% | |
| ACATTATACGATTGTGTATG+TGG | + | tig0020776:88088-88107 | Msa1385820:intron | 30.0% | |
| !! | GGTTTTGTGCTTCTATATTA+TGG | + | tig0020776:88203-88222 | Msa1385820:CDS | 30.0% |
| ATAGATAACAATTTCCACGA+AGG | + | tig0020776:88357-88376 | Msa1385820:CDS | 30.0% | |
| AAACCTGTATTGCAGTTTAT+TGG | + | tig0020776:88537-88556 | Msa1385820:intron | 30.0% | |
| TTTCCAATAAACTGCAATAC+AGG | - | tig0020776:88543-88562 | None:intergenic | 30.0% | |
| ! | CTAAATTTGGACCAAGTTTT+CGG | - | tig0020776:88760-88779 | None:intergenic | 30.0% |
| AAACAATAAAGTTGTGCCAT+TGG | - | tig0020776:89127-89146 | None:intergenic | 30.0% | |
| TAATGTGCTTTCTGCATAAA+CGG | + | tig0020776:89184-89203 | Msa1385820:CDS | 30.0% | |
| TGATCTACATAGAGACTTAA+GGG | - | tig0020776:89268-89287 | None:intergenic | 30.0% | |
| TAGACCTGAATATGCTATAA+GGG | - | tig0020776:89334-89353 | None:intergenic | 30.0% | |
| ACAAACATTACAAAGTGGAT+AGG | - | tig0020776:89448-89467 | None:intergenic | 30.0% | |
| CATCAACAAACATTACAAAG+TGG | - | tig0020776:89453-89472 | None:intergenic | 30.0% | |
| TTGATGAAATACTTCTTCAC+AGG | + | tig0020776:89467-89486 | Msa1385820:intron | 30.0% | |
| TGATGAAATACTTCTTCACA+GGG | + | tig0020776:89468-89487 | Msa1385820:intron | 30.0% | |
| !! | TGGAATAGTAAGTATTGACA+TGG | + | tig0020776:89573-89592 | Msa1385820:intron | 30.0% |
| !!! | ACTTATTTTGGCTGCTTTAT+TGG | + | tig0020776:89974-89993 | Msa1385820:CDS | 30.0% |
| !!! | CTTATTTTGGCTGCTTTATT+GGG | + | tig0020776:89975-89994 | Msa1385820:CDS | 30.0% |
| ! | GCAAGGCATAATTTGAATTT+TGG | - | tig0020776:90114-90133 | None:intergenic | 30.0% |
| !!! | GCTTCTCTATTACTTTTTTG+AGG | + | tig0020776:90155-90174 | Msa1385820:intron | 30.0% |
| GCAATACTAGAACAATAATG+TGG | - | tig0020776:90256-90275 | None:intergenic | 30.0% | |
| AGGTGATTAAGAAATGAATC+AGG | - | tig0020776:90291-90310 | None:intergenic | 30.0% | |
| AGAGATATTTGGAAAAGAGA+AGG | - | tig0020776:90311-90330 | None:intergenic | 30.0% | |
| !!! | GCATAGTCATTTTTCCTATA+CGG | + | tig0020776:90582-90601 | Msa1385820:three_prime_UTR | 30.0% |
| TGAATAATCACAGAAGCCAT+TGG | - | tig0020776:86442-86461 | None:intergenic | 35.0% | |
| GCTCAAAATATGAACATCTC+TGG | - | tig0020776:86530-86549 | None:intergenic | 35.0% | |
| TTGTGTCAAATGTCTGTCAA+AGG | + | tig0020776:86690-86709 | Msa1385820:intron | 35.0% | |
| AAATGTCTGTCAAAGGATCA+GGG | + | tig0020776:86697-86716 | Msa1385820:intron | 35.0% | |
| TCGGTTTAAAGATCACAATG+TGG | - | tig0020776:86933-86952 | None:intergenic | 35.0% | |
| AGTTAACATGATACTGGAGT+CGG | - | tig0020776:86952-86971 | None:intergenic | 35.0% | |
| ATTTATACATCCAACAGTCC+AGG | + | tig0020776:86997-87016 | Msa1385820:intron | 35.0% | |
| !! | TGTTTTGAATTTTCAGGAGG+AGG | + | tig0020776:87105-87124 | Msa1385820:intron | 35.0% |
| !! | AATTTTCAGGAGGAGGATTT+GGG | + | tig0020776:87112-87131 | Msa1385820:intron | 35.0% |
| !!! | TTCTGTTTTTGCTTCTTTGG+TGG | + | tig0020776:87177-87196 | Msa1385820:CDS | 35.0% |
| ! | TTCTGGTTATTGGTTATACC+TGG | + | tig0020776:87240-87259 | Msa1385820:CDS | 35.0% |
| ! | TTCAAGGAAGTGCAAAACTA+AGG | - | tig0020776:87392-87411 | None:intergenic | 35.0% |
| CCAATCCTTCATGGAATATA+AGG | - | tig0020776:87904-87923 | None:intergenic | 35.0% | |
| CCTTATATTCCATGAAGGAT+TGG | + | tig0020776:87901-87920 | Msa1385820:intron | 35.0% | |
| !!! | CTGCCTTTTTTAACACCATT+TGG | + | tig0020776:88060-88079 | Msa1385820:intron | 35.0% |
| ACTGTTATGCAGGTATACAT+TGG | + | tig0020776:88159-88178 | Msa1385820:intron | 35.0% | |
| TGTGCTTCTATATTATGGGT+TGG | + | tig0020776:88208-88227 | Msa1385820:CDS | 35.0% | |
| !! | TTCTATATTATGGGTTGGAC+AGG | + | tig0020776:88213-88232 | Msa1385820:CDS | 35.0% |
| GAAGACTACTGACAATATGA+AGG | - | tig0020776:88268-88287 | None:intergenic | 35.0% | |
| ATCGAAGATCAGTGAAGATA+TGG | - | tig0020776:88290-88309 | None:intergenic | 35.0% | |
| TTCATGATTGACCGAAAACT+TGG | + | tig0020776:88746-88765 | Msa1385820:intron | 35.0% | |
| ! | ATTTGCTACAATCCATGTTG+TGG | + | tig0020776:88828-88847 | Msa1385820:intron | 35.0% |
| AAACAGTTGTAGACTTGTAG+TGG | + | tig0020776:88889-88908 | Msa1385820:intron | 35.0% | |
| ATTTCGTTTCTCATCACTGT+AGG | + | tig0020776:89092-89111 | Msa1385820:intron | 35.0% | |
| ! | TTCCTTTTCGTTATGACCTT+TGG | + | tig0020776:89153-89172 | Msa1385820:CDS | 35.0% |
| GCACATTAATATTGCACCAA+AGG | - | tig0020776:89172-89191 | None:intergenic | 35.0% | |
| AATGTGCTTTCTGCATAAAC+GGG | + | tig0020776:89185-89204 | Msa1385820:CDS | 35.0% | |
| GTGATCTACATAGAGACTTA+AGG | - | tig0020776:89269-89288 | None:intergenic | 35.0% | |
| ATACCCCTTATAGCATATTC+AGG | + | tig0020776:89327-89346 | Msa1385820:intron | 35.0% | |
| AGACCTGAATATGCTATAAG+GGG | - | tig0020776:89333-89352 | None:intergenic | 35.0% | |
| GTAGACCTGAATATGCTATA+AGG | - | tig0020776:89335-89354 | None:intergenic | 35.0% | |
| TCCTCATGATCTTCCAATAA+TGG | + | tig0020776:89399-89418 | Msa1385820:intron | 35.0% | |
| ACCATTATTGGAAGATCATG+AGG | - | tig0020776:89403-89422 | None:intergenic | 35.0% | |
| GGAAAGAAAACAAGAACTCA+GGG | - | tig0020776:89427-89446 | None:intergenic | 35.0% | |
| AGGAAAGAAAACAAGAACTC+AGG | - | tig0020776:89428-89447 | None:intergenic | 35.0% | |
| TATGTTGTAACTCCAGCAAT+TGG | + | tig0020776:89505-89524 | Msa1385820:CDS | 35.0% | |
| GTATTGCAATGGCAGTATAT+GGG | + | tig0020776:89542-89561 | Msa1385820:CDS | 35.0% | |
| TATTGCAATGGCAGTATATG+GGG | + | tig0020776:89543-89562 | Msa1385820:CDS | 35.0% | |
| AATGCAAAACTGTAGTTCCT+TGG | + | tig0020776:89596-89615 | Msa1385820:intron | 35.0% | |
| ATGCAAAACTGTAGTTCCTT+GGG | + | tig0020776:89597-89616 | Msa1385820:intron | 35.0% | |
| TTAAATATGCCAGTGTTCTC+TGG | + | tig0020776:89714-89733 | Msa1385820:intron | 35.0% | |
| TCTTACTTCTGCTAGATTTC+AGG | + | tig0020776:89818-89837 | Msa1385820:CDS | 35.0% | |
| TTCGTAACATTCCTGTTGTT+TGG | + | tig0020776:89841-89860 | Msa1385820:intron | 35.0% | |
| TAATGTACCAACAAATCCAC+TGG | - | tig0020776:89949-89968 | None:intergenic | 35.0% | |
| TTTATAATACTTTGCGGTGC+AGG | + | tig0020776:90348-90367 | Msa1385820:intron | 35.0% | |
| ! | CTTTTGCACAGCTAAAGATA+TGG | + | tig0020776:90377-90396 | Msa1385820:CDS | 35.0% |
| ! | AATTGCTACGGTGTTCTTTT+TGG | + | tig0020776:90411-90430 | Msa1385820:CDS | 35.0% |
| !!! | TGTCACTCTGCAGTTTTTTA+TGG | + | tig0020776:90488-90507 | Msa1385820:CDS | 35.0% |
| !!! | ACTCTGCAGTTTTTTATGGT+TGG | + | tig0020776:90492-90511 | Msa1385820:CDS | 35.0% |
| !!! | TTTTTTATGGTTGGCTCTCA+AGG | + | tig0020776:90501-90520 | Msa1385820:CDS | 35.0% |
| ACATTAAATTCACTCACTGG+TGG | - | tig0020776:90548-90567 | None:intergenic | 35.0% | |
| GCAACATTAAATTCACTCAC+TGG | - | tig0020776:90551-90570 | None:intergenic | 35.0% | |
| TGTACACTTCATTCAACTGA+AGG | - | tig0020776:90615-90634 | None:intergenic | 35.0% | |
| AGACATACATGGAGTAGAGT+TGG | - | tig0020776:86378-86397 | None:intergenic | 40.0% | |
| GAACTGAGAACTTGAACCAA+TGG | + | tig0020776:86423-86442 | Msa1385820:exon | 40.0% | |
| ! | TCTCTGGTATGGCTTTTATG+CGG | - | tig0020776:86514-86533 | None:intergenic | 40.0% |
| CAAATGTCTGTCAAAGGATC+AGG | + | tig0020776:86696-86715 | Msa1385820:intron | 40.0% | |
| ! | GCAACATAGAAATTGGTCTC+AGG | - | tig0020776:86750-86769 | None:intergenic | 40.0% |
| ACAACCAACAACCTAGAAAC+CGG | + | tig0020776:86860-86879 | Msa1385820:intron | 40.0% | |
| ATGTTCAATTCCTGGACTGT+TGG | - | tig0020776:87010-87029 | None:intergenic | 40.0% | |
| ACAGTCCAGGAATTGAACAT+TGG | + | tig0020776:87010-87029 | Msa1385820:intron | 40.0% | |
| AGTCTCCAATGTTCAATTCC+TGG | - | tig0020776:87018-87037 | None:intergenic | 40.0% | |
| ATTGTGAATTTGGAGGCTAG+TGG | + | tig0020776:87070-87089 | Msa1385820:intron | 40.0% | |
| !! | GAATTTTCAGGAGGAGGATT+TGG | + | tig0020776:87111-87130 | Msa1385820:intron | 40.0% |
| !!! | TTTTTGCTTCTTTGGTGGTG+CGG | + | tig0020776:87182-87201 | Msa1385820:CDS | 40.0% |
| ! | TCCAAGAATGCTTTGATGGT+TGG | + | tig0020776:87214-87233 | Msa1385820:CDS | 40.0% |
| ! | TCCAACCATCAAAGCATTCT+TGG | - | tig0020776:87218-87237 | None:intergenic | 40.0% |
| ! | TGGTTGGAACTTCTGGTTAT+TGG | + | tig0020776:87230-87249 | Msa1385820:CDS | 40.0% |
| !!! | ATTTTGATTTCGGCTTAGGG+TGG | + | tig0020776:87773-87792 | Msa1385820:intron | 40.0% |
| !! | ATGCAGGTATACATTGGTTC+CGG | + | tig0020776:88165-88184 | Msa1385820:intron | 40.0% |
| CTGACAATATGAAGGAACTG+TGG | - | tig0020776:88260-88279 | None:intergenic | 40.0% | |
| AGTTAGATATGTTCCCTGAC+AGG | - | tig0020776:88316-88335 | None:intergenic | 40.0% | |
| ! | GCAGTAATTGGTGACTTCAA+CGG | + | tig0020776:88381-88400 | Msa1385820:CDS | 40.0% |
| ACATTTGCTCTACTCAGTGA+TGG | + | tig0020776:88570-88589 | Msa1385820:CDS | 40.0% | |
| CATTTGCTCTACTCAGTGAT+GGG | + | tig0020776:88571-88590 | Msa1385820:CDS | 40.0% | |
| TCTTGGTTGGCAATTACGAA+TGG | + | tig0020776:88688-88707 | Msa1385820:intron | 40.0% | |
| ! | TTGTAGTGGTTTGCCAACAA+AGG | + | tig0020776:88903-88922 | Msa1385820:intron | 40.0% |
| CTAGGTGTTTGCTCAATGTT+TGG | + | tig0020776:88927-88946 | Msa1385820:intron | 40.0% | |
| CACCAAAGGTCATAACGAAA+AGG | - | tig0020776:89158-89177 | None:intergenic | 40.0% | |
| ATGTGCTTTCTGCATAAACG+GGG | + | tig0020776:89186-89205 | Msa1385820:CDS | 40.0% | |
| TAAACGGGGTGATAATAGCA+AGG | + | tig0020776:89200-89219 | Msa1385820:CDS | 40.0% | |
| AAACGGGGTGATAATAGCAA+GGG | + | tig0020776:89201-89220 | Msa1385820:CDS | 40.0% | |
| GTCTCTATGTAGATCACTCA+CGG | + | tig0020776:89272-89291 | Msa1385820:intron | 40.0% | |
| TCTCTATGTAGATCACTCAC+GGG | + | tig0020776:89273-89292 | Msa1385820:intron | 40.0% | |
| GTCTACAACACGCATTTGTA+TGG | + | tig0020776:89349-89368 | Msa1385820:CDS | 40.0% | |
| AGAACTCAGGGAACCATTAT+TGG | - | tig0020776:89415-89434 | None:intergenic | 40.0% | |
| TGAAATACTTCTTCACAGGG+CGG | + | tig0020776:89471-89490 | Msa1385820:intron | 40.0% | |
| TGCTGGAGTTACAACATACT+TGG | - | tig0020776:89503-89522 | None:intergenic | 40.0% | |
| !! | TTCTGGTGTTGGTATTGCAA+TGG | + | tig0020776:89531-89550 | Msa1385820:CDS | 40.0% |
| GGTATTGCAATGGCAGTATA+TGG | + | tig0020776:89541-89560 | Msa1385820:CDS | 40.0% | |
| !!! | TTCTTTTGGAGCTTTTGCTC+AGG | + | tig0020776:89783-89802 | Msa1385820:CDS | 40.0% |
| ATATACGTCAGCCAAACAAC+AGG | - | tig0020776:89855-89874 | None:intergenic | 40.0% | |
| ! | AGCATATCCAGTGGATTTGT+TGG | + | tig0020776:89939-89958 | Msa1385820:intron | 40.0% |
| CAGCGAAATAAAAGGGTAGA+TGG | - | tig0020776:90079-90098 | None:intergenic | 40.0% | |
| TAGCATGTTAGCACTTAGCA+AGG | - | tig0020776:90131-90150 | None:intergenic | 40.0% | |
| ACTGCTTGGAACGAAATGTA+CGG | - | tig0020776:90439-90458 | None:intergenic | 40.0% | |
| TTCGTTCCAAGCAGTTATCA+TGG | + | tig0020776:90444-90463 | Msa1385820:CDS | 40.0% | |
| ACATGACCATGATAACTGCT+TGG | - | tig0020776:90453-90472 | None:intergenic | 40.0% | |
| CACACGCTAGACAATGTGAT+TGG | - | tig0020776:86726-86745 | None:intergenic | 45.0% | |
| TCTCAATTGCTCCGGTTTCT+AGG | - | tig0020776:86874-86893 | None:intergenic | 45.0% | |
| ! | ATCTGGAGTCTCAATTGCTC+CGG | - | tig0020776:86882-86901 | None:intergenic | 45.0% |
| ATTTGGGTACGACTTCGCTT+GGG | + | tig0020776:87128-87147 | Msa1385820:CDS | 45.0% | |
| CGGATCCAAGAATGCTTTGA+TGG | + | tig0020776:87210-87229 | Msa1385820:CDS | 45.0% | |
| ! | GCTTTGATGGTTGGAACTTC+TGG | + | tig0020776:87223-87242 | Msa1385820:CDS | 45.0% |
| CTGCAAACTTGAAGCCCAAT+TGG | + | tig0020776:87263-87282 | Msa1385820:CDS | 45.0% | |
| CGCACTTGCAGTTACCAATT+GGG | - | tig0020776:87280-87299 | None:intergenic | 45.0% | |
| CCTGCATAACAGTCACTCAA+TGG | - | tig0020776:88152-88171 | None:intergenic | 45.0% | |
| CCATTGAGTGACTGTTATGC+AGG | + | tig0020776:88149-88168 | Msa1385820:intron | 45.0% | |
| TTCCGGCTTCTGTGTATCTT+GGG | + | tig0020776:88182-88201 | Msa1385820:CDS | 45.0% | |
| AACCCAAGATACACAGAAGC+CGG | - | tig0020776:88187-88206 | None:intergenic | 45.0% | |
| TGATCTTCGATTGACCTGTC+AGG | + | tig0020776:88299-88318 | Msa1385820:intron | 45.0% | |
| GATCTTCGATTGACCTGTCA+GGG | + | tig0020776:88300-88319 | Msa1385820:intron | 45.0% | |
| ! | TTCCACGAAGGTGCAGTAAT+TGG | + | tig0020776:88369-88388 | Msa1385820:CDS | 45.0% |
| TGACTTCAACGGAGAGTTCT+GGG | + | tig0020776:88392-88411 | Msa1385820:CDS | 45.0% | |
| GGGTGTATACACACTTCATC+AGG | + | tig0020776:88413-88432 | Msa1385820:CDS | 45.0% | |
| TTTCCATGTTTACGCGCTCT+TGG | + | tig0020776:88671-88690 | Msa1385820:intron | 45.0% | |
| ACTTGGTCATTGCCACAACA+TGG | - | tig0020776:88843-88862 | None:intergenic | 45.0% | |
| ! | TGGTTTGCCAACAAAGGTCT+AGG | + | tig0020776:88909-88928 | Msa1385820:intron | 45.0% |
| GCAAACACCTAGACCTTTGT+TGG | - | tig0020776:88919-88938 | None:intergenic | 45.0% | |
| TCGTTTCTCATCACTGTAGG+AGG | + | tig0020776:89095-89114 | Msa1385820:intron | 45.0% | |
| CGTTTCTCATCACTGTAGGA+GGG | + | tig0020776:89096-89115 | Msa1385820:intron | 45.0% | |
| CAAGGGAGGATACAAGCATT+TGG | + | tig0020776:89218-89237 | Msa1385820:CDS | 45.0% | |
| GGATACAAGCATTTGGATGC+CGG | + | tig0020776:89225-89244 | Msa1385820:CDS | 45.0% | |
| ! | ACTCCAGCAATTGGTGTTTC+TGG | + | tig0020776:89514-89533 | Msa1385820:CDS | 45.0% |
| ACACCAGAAACACCAATTGC+TGG | - | tig0020776:89520-89539 | None:intergenic | 45.0% | |
| !! | GCAATTGGTGTTTCTGGTGT+TGG | + | tig0020776:89520-89539 | Msa1385820:CDS | 45.0% |
| ! | GCAGTATATGGGGCTTTTGA+TGG | + | tig0020776:89553-89572 | Msa1385820:CDS | 45.0% |
| CAAAACTGTAGTTCCTTGGG+TGG | + | tig0020776:89600-89619 | Msa1385820:intron | 45.0% | |
| TTCTGATGCAGCATATCCAG+TGG | + | tig0020776:89930-89949 | Msa1385820:intron | 45.0% | |
| ! | TTGGCTGCTTTATTGGGCAT+TGG | + | tig0020776:89981-90000 | Msa1385820:CDS | 45.0% |
| !! | GCTTTATTGGGCATTGGTGA+TGG | + | tig0020776:89987-90006 | Msa1385820:CDS | 45.0% |
| ACGCAGCTCAATGCTTTACT+AGG | + | tig0020776:90020-90039 | Msa1385820:CDS | 45.0% | |
| TAATACTTTGCGGTGCAGGA+AGG | + | tig0020776:90352-90371 | Msa1385820:intron | 45.0% | |
| AATACTTTGCGGTGCAGGAA+GGG | + | tig0020776:90353-90372 | Msa1385820:intron | 45.0% | |
| TGCTTGGAACGAAATGTACG+GGG | - | tig0020776:90437-90456 | None:intergenic | 45.0% | |
| CTGCTTGGAACGAAATGTAC+GGG | - | tig0020776:90438-90457 | None:intergenic | 45.0% | |
| ! | TTTATGGTTGGCTCTCAAGG+TGG | + | tig0020776:90504-90523 | Msa1385820:CDS | 45.0% |
| ! | TTATGGTTGGCTCTCAAGGT+GGG | + | tig0020776:90505-90524 | Msa1385820:CDS | 45.0% |
| AATTCACTCACTGGTGGAGA+GGG | - | tig0020776:90542-90561 | None:intergenic | 45.0% | |
| AAATTCACTCACTGGTGGAG+AGG | - | tig0020776:90543-90562 | None:intergenic | 45.0% | |
| CTGAAGGAAATGTGCCGTAT+AGG | - | tig0020776:90599-90618 | None:intergenic | 45.0% | |
| ! | TGCTCCGGTTTCTAGGTTGT+TGG | - | tig0020776:86867-86886 | None:intergenic | 50.0% |
| GATTTGGGTACGACTTCGCT+TGG | + | tig0020776:87127-87146 | Msa1385820:CDS | 50.0% | |
| !! | TCTTTGGTGGTGCGGATTCT+CGG | + | tig0020776:87190-87209 | Msa1385820:CDS | 50.0% |
| GCGCACTTGCAGTTACCAAT+TGG | - | tig0020776:87281-87300 | None:intergenic | 50.0% | |
| ACCTGACAGCAGTGACTACA+TGG | + | tig0020776:87645-87664 | Msa1385820:intron | 50.0% | |
| TCCATGTAGTCACTGCTGTC+AGG | - | tig0020776:87649-87668 | None:intergenic | 50.0% | |
| TGACAGCAGTGACTACATGG+AGG | + | tig0020776:87648-87667 | Msa1385820:intron | 50.0% | |
| GTTCCGGCTTCTGTGTATCT+TGG | + | tig0020776:88181-88200 | Msa1385820:CDS | 50.0% | |
| TATAGCATGACTGCGTGCAG+TGG | - | tig0020776:88340-88359 | None:intergenic | 50.0% | |
| CACCAATTACTGCACCTTCG+TGG | - | tig0020776:88374-88393 | None:intergenic | 50.0% | |
| GTGACTTCAACGGAGAGTTC+TGG | + | tig0020776:88391-88410 | Msa1385820:CDS | 50.0% | |
| GACTTCAACGGAGAGTTCTG+GGG | + | tig0020776:88393-88412 | Msa1385820:CDS | 50.0% | |
| ! | CAACCAAGAGCGCGTAAACA+TGG | - | tig0020776:88677-88696 | None:intergenic | 50.0% |
| CATGTTTACGCGCTCTTGGT+TGG | + | tig0020776:88675-88694 | Msa1385820:intron | 50.0% | |
| !! | CTGTAGGAGGGAAGTACCAA+TGG | + | tig0020776:89108-89127 | Msa1385820:intron | 50.0% |
| AACTGTAGTTCCTTGGGTGG+TGG | + | tig0020776:89603-89622 | Msa1385820:intron | 50.0% | |
| ! | CACTTTTGAACCACCACCCA+AGG | - | tig0020776:89616-89635 | None:intergenic | 50.0% |
| ATACTTTGCGGTGCAGGAAG+GGG | + | tig0020776:90354-90373 | Msa1385820:intron | 50.0% | |
| ! | GCAGAGCGCTACAATTGCTA+CGG | + | tig0020776:90399-90418 | Msa1385820:CDS | 50.0% |
| ! | TATGGTTGGCTCTCAAGGTG+GGG | + | tig0020776:90506-90525 | Msa1385820:CDS | 50.0% |
| CTAACGGCGTTTCTTCGTCG+CGG | - | tig0020776:86465-86484 | None:intergenic | 55.0% | |
| AGACTCCAGATGACGTAGCG+TGG | + | tig0020776:86891-86910 | Msa1385820:intron | 55.0% | |
| GACTCCAGATGACGTAGCGT+GGG | + | tig0020776:86892-86911 | Msa1385820:intron | 55.0% | |
| ATGACCCACGCTACGTCATC+TGG | - | tig0020776:86899-86918 | None:intergenic | 55.0% | |
| ! | TGGGCTTCAAGTTTGCAGCC+AGG | - | tig0020776:87261-87280 | None:intergenic | 55.0% |
| GCAGTGACTACATGGAGGCT+TGG | + | tig0020776:87653-87672 | Msa1385820:intron | 55.0% | |
| CTACAGGGGCCAATCCTTCA+TGG | - | tig0020776:87913-87932 | None:intergenic | 55.0% | |
| !! | TGCTCTACTCAGTGATGGGC+AGG | + | tig0020776:88575-88594 | Msa1385820:CDS | 55.0% |
| !! | CTCAGTGATGGGCAGGTATG+TGG | + | tig0020776:88582-88601 | Msa1385820:intron | 55.0% |
| !! | AGTGATGGGCAGGTATGTGG+TGG | + | tig0020776:88585-88604 | Msa1385820:intron | 55.0% |
| CGGGGTGATAATAGCAAGGG+AGG | + | tig0020776:89204-89223 | Msa1385820:CDS | 55.0% | |
| GGACTTTCATTCACCAGCGC+CGG | - | tig0020776:89247-89266 | None:intergenic | 55.0% | |
| GTCGCTGGTCGTCTTACTTC+TGG | + | tig0020776:89736-89755 | Msa1385820:CDS | 55.0% | |
| AAGCATTTGGATGCCGGCGC+TGG | + | tig0020776:89231-89250 | Msa1385820:CDS | 60.0% | |
| TGCCAGTGTTCTCTGGTCGC+TGG | + | tig0020776:89721-89740 | Msa1385820:intron | 60.0% | |
| GACCAGCGACCAGAGAACAC+TGG | - | tig0020776:89726-89745 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020776 | gene | 86250 | 90732 | 86250 | ID=Msa1385820;Name=Msa1385820 |
| tig0020776 | mRNA | 86250 | 90732 | 86250 | ID=Msa1385820-mRNA-1;Parent=Msa1385820;Name=Msa1385820-mRNA-1;_AED=0.33;_eAED=0.33;_QI=192|0.9|0.81|1|1|1|11|174|412 |
| tig0020776 | exon | 86250 | 86615 | 86250 | ID=Msa1385820-mRNA-1:exon:9789;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 87121 | 87284 | 87121 | ID=Msa1385820-mRNA-1:exon:9790;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 88171 | 88234 | 88171 | ID=Msa1385820-mRNA-1:exon:9791;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 88321 | 88434 | 88321 | ID=Msa1385820-mRNA-1:exon:9792;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 88552 | 88596 | 88552 | ID=Msa1385820-mRNA-1:exon:9793;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 89114 | 89252 | 89114 | ID=Msa1385820-mRNA-1:exon:9794;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 89349 | 89370 | 89349 | ID=Msa1385820-mRNA-1:exon:9795;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 89489 | 89579 | 89489 | ID=Msa1385820-mRNA-1:exon:9796;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 89727 | 89839 | 89727 | ID=Msa1385820-mRNA-1:exon:9797;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 89941 | 90064 | 89941 | ID=Msa1385820-mRNA-1:exon:9798;Parent=Msa1385820-mRNA-1 |
| tig0020776 | exon | 90370 | 90732 | 90370 | ID=Msa1385820-mRNA-1:exon:9799;Parent=Msa1385820-mRNA-1 |
| tig0020776 | five_prime_UTR | 86250 | 86441 | 86250 | ID=Msa1385820-mRNA-1:five_prime_utr;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 86442 | 86615 | 86442 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 87121 | 87284 | 87121 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 88171 | 88234 | 88171 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 88321 | 88434 | 88321 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 88552 | 88596 | 88552 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 89114 | 89252 | 89114 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 89349 | 89370 | 89349 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 89489 | 89579 | 89489 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 89727 | 89839 | 89727 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 89941 | 90064 | 89941 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | CDS | 90370 | 90558 | 90370 | ID=Msa1385820-mRNA-1:cds;Parent=Msa1385820-mRNA-1 |
| tig0020776 | three_prime_UTR | 90559 | 90732 | 90559 | ID=Msa1385820-mRNA-1:three_prime_utr;Parent=Msa1385820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
