Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439210 | XP_024636842.1 | 96.852 | 413 | 13 | 0 | 1 | 413 | 1 | 413 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439210 | A0A396IFQ4 | 96.154 | 416 | 13 | 1 | 1 | 413 | 1 | 416 | 0.0 | 775 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1419090 | Msa1439210 | 0.973385 | 2.438780e-136 | -8.615850e-47 |
| Msa0783340 | Msa1439210 | 0.805511 | 1.288484e-49 | -8.615850e-47 |
| Msa1218670 | Msa1439210 | 0.950178 | 2.811561e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439210 | MtrunA17_Chr4g0068311 | 96.154 | 416 | 13 | 1 | 1 | 413 | 1 | 416 | 0.0 | 775 |
| Msa1439210 | MtrunA17_Chr7g0270071 | 38.756 | 418 | 191 | 11 | 52 | 406 | 144 | 559 | 8.18e-65 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439210 | AT3G06660.1 | 42.318 | 371 | 180 | 11 | 55 | 407 | 66 | 420 | 8.58e-62 | 206 |
| Msa1439210 | AT2G47350.1 | 38.760 | 387 | 183 | 13 | 53 | 409 | 123 | 485 | 1.02e-55 | 191 |
| Msa1439210 | AT1G56460.1 | 62.676 | 142 | 53 | 0 | 262 | 403 | 359 | 500 | 1.02e-51 | 181 |
| Msa1439210 | AT1G56460.2 | 62.676 | 142 | 53 | 0 | 262 | 403 | 389 | 530 | 2.36e-51 | 181 |
| Msa1439210 | AT1G56460.3 | 49.194 | 124 | 63 | 0 | 262 | 385 | 359 | 482 | 1.07e-25 | 109 |
Find 102 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCAAGTATCTTCTTAA+TGG | 0.185993 | tig0028725:-34033 | None:intergenic |
| AAGAAGCTTAAACTCAAATT+TGG | 0.203722 | tig0028725:+31183 | Msa1439210:CDS |
| TTGAGACAAATAGGTCTATT+TGG | 0.207114 | tig0028725:-34690 | None:intergenic |
| TGCCTCCTTGATTGTCCTTA+TGG | 0.246866 | tig0028725:-32213 | None:intergenic |
| TCTTTCAAAGATGCGCTATC+TGG | 0.274602 | tig0028725:+32421 | Msa1439210:CDS |
| TAGTCCTTGTAAATAGTAAT+TGG | 0.287824 | tig0028725:+34603 | Msa1439210:exon |
| AAGCTTCCCCTTTGCAGTCT+TGG | 0.297324 | tig0028725:+34534 | Msa1439210:CDS |
| CAGTAACTCGCTTGCTCTTA+CGG | 0.297893 | tig0028725:-32093 | None:intergenic |
| AAACACTGTTCGATGGACTA+TGG | 0.302142 | tig0028725:+34223 | Msa1439210:CDS |
| TTGCGGGTGGAATGCTTTCT+TGG | 0.309324 | tig0028725:-32376 | None:intergenic |
| AAACCAACAGATTCCCTCTT+TGG | 0.309756 | tig0028725:-32346 | None:intergenic |
| GACTTGGAAGGTTTGTGATT+TGG | 0.321358 | tig0028725:+34642 | Msa1439210:three_prime_UTR |
| GAGAGGCCATGGGGACAAAT+TGG | 0.343442 | tig0028725:+31994 | Msa1439210:CDS |
| TCCTCTTTCTTCTTCCTAGC+AGG | 0.346247 | tig0028725:-34059 | None:intergenic |
| GCAATATTTCAGCATTACTT+TGG | 0.348288 | tig0028725:+31075 | Msa1439210:CDS |
| AGTGATGAATCAATATTAGA+AGG | 0.348762 | tig0028725:+32316 | Msa1439210:CDS |
| TGTACCTGTTAGACATTGTT+TGG | 0.357620 | tig0028725:-34301 | None:intergenic |
| CAATATTTCAGCATTACTTT+GGG | 0.379707 | tig0028725:+31076 | Msa1439210:CDS |
| TGAACAATTATGATTATTGC+GGG | 0.388645 | tig0028725:-32392 | None:intergenic |
| GATACAATTGTTGTTTCTGA+TGG | 0.391441 | tig0028725:+31138 | Msa1439210:CDS |
| TTGTAAGCATTAGTGCAGTT+TGG | 0.393740 | tig0028725:-34492 | None:intergenic |
| TCTTCCAAACAATGTCTAAC+AGG | 0.396325 | tig0028725:+34297 | Msa1439210:CDS |
| GACAAAGAATTGAGACAAAT+AGG | 0.409683 | tig0028725:-34699 | None:intergenic |
| AGTAACTCGCTTGCTCTTAC+GGG | 0.433532 | tig0028725:-32092 | None:intergenic |
| ATTGATTCATCACTTGATGT+AGG | 0.433917 | tig0028725:-32307 | None:intergenic |
| CCGGAAAATCAAAACTTAAC+CGG | 0.434773 | tig0028725:+30771 | Msa1439210:five_prime_UTR |
| CTGGACATCGTGGCTGTTTG+TGG | 0.450910 | tig0028725:-30818 | None:intergenic |
| GTAACAACCAAGACTGCAAA+GGG | 0.456962 | tig0028725:-34541 | None:intergenic |
| AAAAGTTACTACGGTTCCAT+TGG | 0.465504 | tig0028725:-34249 | None:intergenic |
| GCACTAATGCTTACAAGTAT+CGG | 0.471350 | tig0028725:+34499 | Msa1439210:CDS |
| CACTAATGCTTACAAGTATC+GGG | 0.471763 | tig0028725:+34500 | Msa1439210:CDS |
| GGAAGGTTTGTGATTTGGCC+AGG | 0.475821 | tig0028725:+34647 | Msa1439210:three_prime_UTR |
| AGTGTTTGATGCTAGATTGA+AGG | 0.479209 | tig0028725:-34207 | None:intergenic |
| CTTTCAAAGATGCGCTATCT+GGG | 0.481686 | tig0028725:+32422 | Msa1439210:CDS |
| AAGCTTAAACTCAAATTTGG+AGG | 0.488206 | tig0028725:+31186 | Msa1439210:CDS |
| GCAAGCATTATTGACATCTC+AGG | 0.488483 | tig0028725:+32451 | Msa1439210:CDS |
| AAATCCAATTACTATTTACA+AGG | 0.489122 | tig0028725:-34607 | None:intergenic |
| AAAGTTACTACGGTTCCATT+GGG | 0.491895 | tig0028725:-34248 | None:intergenic |
| GACATTGTTTGGAAGATACT+TGG | 0.494136 | tig0028725:-34290 | None:intergenic |
| GGAAAAGATGAATAAGCAAA+GGG | 0.498530 | tig0028725:+34079 | Msa1439210:CDS |
| GAAGGCAGCTAGGGAGGCCG+AGG | 0.498972 | tig0028725:+33873 | Msa1439210:CDS |
| TAGAAGGGAAGAAGCCAAAG+AGG | 0.498989 | tig0028725:+32332 | Msa1439210:CDS |
| AGGAAAGAACTATGAGGATC+GGG | 0.505453 | tig0028725:+32267 | Msa1439210:CDS |
| GTGTTTGATGCTAGATTGAA+GGG | 0.505698 | tig0028725:-34206 | None:intergenic |
| AACACTGTTCGATGGACTAT+GGG | 0.508722 | tig0028725:+34224 | Msa1439210:CDS |
| TCAAGCTGAGAAGGCAGCTA+GGG | 0.513394 | tig0028725:+33864 | Msa1439210:CDS |
| GCATTGCGAGGATCGGAAGA+AGG | 0.519451 | tig0028725:-31234 | None:intergenic |
| TGAGAGATGTGCCATGGATG+TGG | 0.520572 | tig0028725:+32114 | Msa1439210:CDS |
| AAGAGGAGTTAGTCGCCATA+AGG | 0.521573 | tig0028725:+32198 | Msa1439210:CDS |
| GCAAAGGGGAAGCTTTGACT+TGG | 0.523120 | tig0028725:-34526 | None:intergenic |
| TTGATTCATCACTTGATGTA+GGG | 0.523562 | tig0028725:-32306 | None:intergenic |
| TACCTTAGCATTGCGAGGAT+CGG | 0.526162 | tig0028725:-31241 | None:intergenic |
| GACATCGTGGCTGTTTGTGG+TGG | 0.526939 | tig0028725:-30815 | None:intergenic |
| AGGAAAAGATGAATAAGCAA+AGG | 0.527756 | tig0028725:+34078 | Msa1439210:CDS |
| ATGTCAATAATGCTTGCAAC+TGG | 0.529585 | tig0028725:-32445 | None:intergenic |
| GCGAGGATCGGAAGAAGGCT+TGG | 0.529979 | tig0028725:-31229 | None:intergenic |
| GACCTAAAATTAACTGGACA+TGG | 0.532237 | tig0028725:-34764 | None:intergenic |
| GGTGTTTGTAAAGATGCATC+AGG | 0.533508 | tig0028725:+32247 | Msa1439210:CDS |
| CACAAACAGCCACGATGTCC+AGG | 0.541779 | tig0028725:+30819 | Msa1439210:exon |
| TTCAAGCTGAGAAGGCAGCT+AGG | 0.542356 | tig0028725:+33863 | Msa1439210:CDS |
| ATTGCATCACAATTAACCCT+AGG | 0.545996 | tig0028725:-31057 | None:intergenic |
| TGTGGTGGGTTTCCTTGCTA+CGG | 0.547187 | tig0028725:-30800 | None:intergenic |
| TTCCGATCCTCGCAATGCTA+AGG | 0.547346 | tig0028725:+31239 | Msa1439210:CDS |
| CTGAACAATTATGATTATTG+CGG | 0.553988 | tig0028725:-32393 | None:intergenic |
| GCTTAACCAATTTGTCCCCA+TGG | 0.555543 | tig0028725:-32000 | None:intergenic |
| CAGGAAAGAACTATGAGGAT+CGG | 0.556559 | tig0028725:+32266 | Msa1439210:CDS |
| GAATCATTCACATAAAAGAA+AGG | 0.556754 | tig0028725:+32054 | Msa1439210:CDS |
| GTGATGAATCAATATTAGAA+GGG | 0.559877 | tig0028725:+32317 | Msa1439210:CDS |
| GCAGCCATTAAGAAGATACT+TGG | 0.560222 | tig0028725:+34029 | Msa1439210:CDS |
| ACATCGTGGCTGTTTGTGGT+GGG | 0.562752 | tig0028725:-30814 | None:intergenic |
| TCCTGCTAGGAAGAAGAAAG+AGG | 0.563807 | tig0028725:+34058 | Msa1439210:CDS |
| GATTTGGCCAGGAGGATATG+TGG | 0.565880 | tig0028725:+34658 | Msa1439210:three_prime_UTR |
| AGCTGAGAAGGCAGCTAGGG+AGG | 0.566469 | tig0028725:+33867 | Msa1439210:CDS |
| CGATGGACTATGGGTCCCAA+TGG | 0.570559 | tig0028725:+34233 | Msa1439210:CDS |
| GAGAGATGTGCCATGGATGT+GGG | 0.575263 | tig0028725:+32115 | Msa1439210:CDS |
| ATCGCTACACCCCACATCCA+TGG | 0.577901 | tig0028725:-32125 | None:intergenic |
| AAGGACTAACATGCAATCAC+AGG | 0.578464 | tig0028725:-34588 | None:intergenic |
| AGAAGGGAAGAAGCCAAAGA+GGG | 0.585885 | tig0028725:+32333 | Msa1439210:CDS |
| AGTCGCCATAAGGACAATCA+AGG | 0.586794 | tig0028725:+32208 | Msa1439210:CDS |
| TAGCATCAAACACTGTTCGA+TGG | 0.594632 | tig0028725:+34216 | Msa1439210:CDS |
| GTCGCAGTCCCACTGAACTC+CGG | 0.603946 | tig0028725:+30752 | Msa1439210:five_prime_UTR |
| GACTTGTTTGTGATACAAAG+AGG | 0.609154 | tig0028725:-30732 | None:intergenic |
| TGTAACAACCAAGACTGCAA+AGG | 0.609478 | tig0028725:-34542 | None:intergenic |
| ACAATTATGATTATTGCGGG+TGG | 0.613619 | tig0028725:-32389 | None:intergenic |
| TACTTGGTCAAGATCCTGCT+AGG | 0.618102 | tig0028725:+34045 | Msa1439210:CDS |
| AACCGGAAAACACCGTAGCA+AGG | 0.618481 | tig0028725:+30788 | Msa1439210:five_prime_UTR |
| ACTTGTTTGTGATACAAAGA+GGG | 0.621565 | tig0028725:-30731 | None:intergenic |
| GCAAAGGGATGAAATAGCCA+AGG | 0.623359 | tig0028725:+34094 | Msa1439210:CDS |
| ATTATTACCTTAGCATTGCG+AGG | 0.624163 | tig0028725:-31246 | None:intergenic |
| TGATGTGCCACGAAAACCTA+GGG | 0.628689 | tig0028725:+31041 | Msa1439210:CDS |
| AAGCCAAAGAGGGAATCTGT+TGG | 0.631087 | tig0028725:+32343 | Msa1439210:CDS |
| TGCATCAGGAAAGAACTATG+AGG | 0.633064 | tig0028725:+32261 | Msa1439210:CDS |
| GTGATGTGCCACGAAAACCT+AGG | 0.636600 | tig0028725:+31040 | Msa1439210:CDS |
| CAAGGAGGCACAACAATGCG+TGG | 0.648200 | tig0028725:+32226 | Msa1439210:CDS |
| ACCTAAAATTAACTGGACAT+GGG | 0.651447 | tig0028725:-34763 | None:intergenic |
| AGGTTTGTGATTTGGCCAGG+AGG | 0.665147 | tig0028725:+34650 | Msa1439210:three_prime_UTR |
| AGTTACTGAGAGATGTGCCA+TGG | 0.668595 | tig0028725:+32108 | Msa1439210:CDS |
| ACAGCTAATCAAGAAAGCTG+AGG | 0.671432 | tig0028725:+33822 | Msa1439210:CDS |
| AGAGATGTGCCATGGATGTG+GGG | 0.675260 | tig0028725:+32116 | Msa1439210:CDS |
| CGCCATAAGGACAATCAAGG+AGG | 0.690105 | tig0028725:+32211 | Msa1439210:CDS |
| AAAGGAAAACCTGGACATCG+TGG | 0.698714 | tig0028725:-30828 | None:intergenic |
| TAACAACCAAGACTGCAAAG+GGG | 0.763481 | tig0028725:-34540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATATTAAATGAAT+TGG | - | tig0028725:31554-31573 | None:intergenic | 10.0% |
| !! | ACAATTATTATAGATAAAAT+TGG | + | tig0028725:32999-33018 | Msa1439210:intron | 10.0% |
| !!! | ACTAAAGAAATTTTGATTAA+TGG | + | tig0028725:30961-30980 | Msa1439210:intron | 15.0% |
| !!! | GAAAAATATTTTGTGTATAT+AGG | + | tig0028725:30983-31002 | Msa1439210:intron | 15.0% |
| !! | AATATTGCAAATTGAAATTA+TGG | + | tig0028725:31615-31634 | Msa1439210:intron | 15.0% |
| !! | TATAGTTGCATTATTATATA+TGG | - | tig0028725:31871-31890 | None:intergenic | 15.0% |
| !!! | TTTTATCTTGTTTGATTTCA+TGG | - | tig0028725:30692-30711 | None:intergenic | 20.0% |
| !! | AAAAATCAACTTACGAAATT+AGG | - | tig0028725:30917-30936 | None:intergenic | 20.0% |
| !! | TTCTTTAGTAATTAGTACTA+TGG | - | tig0028725:30950-30969 | None:intergenic | 20.0% |
| !! | TTATGAATTAAGTGTATGTT+TGG | + | tig0028725:31322-31341 | Msa1439210:intron | 20.0% |
| !!! | TAGAAAAAAATTGATTCTAG+AGG | + | tig0028725:31366-31385 | Msa1439210:intron | 20.0% |
| !!! | ATTTTTTACGCATTTTTACA+AGG | + | tig0028725:31479-31498 | Msa1439210:intron | 20.0% |
| !!! | AATTATGGTTCTTCAATTTT+CGG | + | tig0028725:31630-31649 | Msa1439210:intron | 20.0% |
| !! | TACATACCATATAAATTTAG+TGG | + | tig0028725:31774-31793 | Msa1439210:intron | 20.0% |
| !! | ACATACCATATAAATTTAGT+GGG | + | tig0028725:31775-31794 | Msa1439210:intron | 20.0% |
| !! | TATATTTCCTTCAGATAAAT+TGG | + | tig0028725:31887-31906 | Msa1439210:intron | 20.0% |
| !! | AAGCAAATAAAATAAGATCA+AGG | - | tig0028725:32520-32539 | None:intergenic | 20.0% |
| !! | ATAAAATTGTGAGATCTATA+AGG | - | tig0028725:33506-33525 | None:intergenic | 20.0% |
| !! | TAAAGTTTGTAGTATAACAT+TGG | + | tig0028725:33934-33953 | Msa1439210:intron | 20.0% |
| !! | AAAGTTTGTAGTATAACATT+GGG | + | tig0028725:33935-33954 | Msa1439210:intron | 20.0% |
| !!! | CTTTAAAGTTGAAACAATAT+AGG | - | tig0028725:34149-34168 | None:intergenic | 20.0% |
| !! | AAATGTTTAGAAGAAAATCA+AGG | - | tig0028725:34379-34398 | None:intergenic | 20.0% |
| !! | AAATCCAATTACTATTTACA+AGG | - | tig0028725:34610-34629 | None:intergenic | 20.0% |
| !!! | ATTTTATATTTTGCAAGACT+TGG | + | tig0028725:34626-34645 | Msa1439210:three_prime_UTR | 20.0% |
| ! | GACAGATATAAAATACGAAA+AGG | - | tig0028725:30849-30868 | None:intergenic | 25.0% |
| ! | CAATATTTCAGCATTACTTT+GGG | + | tig0028725:31076-31095 | Msa1439210:CDS | 25.0% |
| ! | AAGAAGCTTAAACTCAAATT+TGG | + | tig0028725:31183-31202 | Msa1439210:CDS | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | tig0028725:31392-31411 | Msa1439210:intron | 25.0% |
| !!! | GAATTGATTTTGACATGTTT+GGG | + | tig0028725:31393-31412 | Msa1439210:intron | 25.0% |
| ! | AACTTTACAGAGTTATACAA+AGG | - | tig0028725:31694-31713 | None:intergenic | 25.0% |
| ! | TACACGATTGAAATTCAAAT+GGG | - | tig0028725:31802-31821 | None:intergenic | 25.0% |
| ! | ATACACGATTGAAATTCAAA+TGG | - | tig0028725:31803-31822 | None:intergenic | 25.0% |
| !! | GATTGAATATTTGAAGTTGA+GGG | - | tig0028725:31834-31853 | None:intergenic | 25.0% |
| !! | AGATTGAATATTTGAAGTTG+AGG | - | tig0028725:31835-31854 | None:intergenic | 25.0% |
| ! | GTTAATACCAATTTATCTGA+AGG | - | tig0028725:31897-31916 | None:intergenic | 25.0% |
| ! | GAATCATTCACATAAAAGAA+AGG | + | tig0028725:32054-32073 | Msa1439210:CDS | 25.0% |
| ! | AAAATCAATGCATCAAAAAG+AGG | + | tig0028725:32181-32200 | Msa1439210:CDS | 25.0% |
| ! | AGTGATGAATCAATATTAGA+AGG | + | tig0028725:32316-32335 | Msa1439210:CDS | 25.0% |
| ! | GTGATGAATCAATATTAGAA+GGG | + | tig0028725:32317-32336 | Msa1439210:CDS | 25.0% |
| ! | TGAACAATTATGATTATTGC+GGG | - | tig0028725:32395-32414 | None:intergenic | 25.0% |
| ! | CTGAACAATTATGATTATTG+CGG | - | tig0028725:32396-32415 | None:intergenic | 25.0% |
| !!! | AATCTAACTTTGAGATAATG+TGG | - | tig0028725:32488-32507 | None:intergenic | 25.0% |
| !! | TGTATACTCGATTTAACTTA+TGG | - | tig0028725:32638-32657 | None:intergenic | 25.0% |
| !! | TCAGTTTCATACAACATTTT+GGG | - | tig0028725:32870-32889 | None:intergenic | 25.0% |
| !! | TTCAGTTTCATACAACATTT+TGG | - | tig0028725:32871-32890 | None:intergenic | 25.0% |
| !!! | CACTGAATTTATTTTCTTCT+TGG | - | tig0028725:32911-32930 | None:intergenic | 25.0% |
| !! | TTTTTAATCACATCTTCTCT+TGG | - | tig0028725:32978-32997 | None:intergenic | 25.0% |
| !! | GGTTAGAATATTTTCTTAAG+TGG | + | tig0028725:33046-33065 | Msa1439210:intron | 25.0% |
| !! | GAGAATTTTCTCATAATTAG+AGG | + | tig0028725:33130-33149 | Msa1439210:intron | 25.0% |
| ! | GAGAGATTAAGAAAAACTAT+AGG | + | tig0028725:33157-33176 | Msa1439210:intron | 25.0% |
| !!! | TATCAGTGATTACTTTTACT+TGG | + | tig0028725:33334-33353 | Msa1439210:intron | 25.0% |
| !!! | GTAGTGCATATTACTTTTAA+TGG | + | tig0028725:33392-33411 | Msa1439210:intron | 25.0% |
| ! | TGATCTTAAGAAGAATTACT+CGG | - | tig0028725:33474-33493 | None:intergenic | 25.0% |
| ! | CACTTTCAATCAATATTTGA+TGG | - | tig0028725:33553-33572 | None:intergenic | 25.0% |
| !!! | ACTTTAAAGTTCTAACATGT+TGG | + | tig0028725:34160-34179 | Msa1439210:intron | 25.0% |
| ! | ATCATCAGAAAAAGTTACTA+CGG | - | tig0028725:34261-34280 | None:intergenic | 25.0% |
| !!! | GTAACTTTTTCTGATGATAT+TGG | + | tig0028725:34263-34282 | Msa1439210:CDS | 25.0% |
| !! | TTTTAGTACTTGATATGCTT+TGG | + | tig0028725:34397-34416 | Msa1439210:intron | 25.0% |
| ! | TAGTCCTTGTAAATAGTAAT+TGG | + | tig0028725:34603-34622 | Msa1439210:exon | 25.0% |
| !!! | ATGAGTGAGTTTTGTTGTTA+GGG | - | tig0028725:30662-30681 | None:intergenic | 30.0% |
| !!! | TATGAGTGAGTTTTGTTGTT+AGG | - | tig0028725:30663-30682 | None:intergenic | 30.0% |
| ACTTGTTTGTGATACAAAGA+GGG | - | tig0028725:30734-30753 | None:intergenic | 30.0% | |
| AAAATACGAAAAGGAAAACC+TGG | - | tig0028725:30840-30859 | None:intergenic | 30.0% | |
| ! | ACTTCTTTTTCTCTGCATAA+TGG | - | tig0028725:31022-31041 | None:intergenic | 30.0% |
| GCAATATTTCAGCATTACTT+TGG | + | tig0028725:31075-31094 | Msa1439210:CDS | 30.0% | |
| !! | GATACAATTGTTGTTTCTGA+TGG | + | tig0028725:31138-31157 | Msa1439210:CDS | 30.0% |
| AAGCTTAAACTCAAATTTGG+AGG | + | tig0028725:31186-31205 | Msa1439210:CDS | 30.0% | |
| !! | TTCTAAAGCTTCTCATCTAT+CGG | + | tig0028725:31917-31936 | Msa1439210:intron | 30.0% |
| ! | TCTCTTTTTATCATAAGAGC+GGG | - | tig0028725:31978-31997 | None:intergenic | 30.0% |
| ! | CTCTCTTTTTATCATAAGAG+CGG | - | tig0028725:31979-31998 | None:intergenic | 30.0% |
| TTGATTCATCACTTGATGTA+GGG | - | tig0028725:32309-32328 | None:intergenic | 30.0% | |
| ! | ATTGATTCATCACTTGATGT+AGG | - | tig0028725:32310-32329 | None:intergenic | 30.0% |
| ! | ACTCGATTTAACTTATGGTA+GGG | - | tig0028725:32633-32652 | None:intergenic | 30.0% |
| ! | TACTCGATTTAACTTATGGT+AGG | - | tig0028725:32634-32653 | None:intergenic | 30.0% |
| ! | ATTGGTGTAGCTTTTATAGT+AGG | + | tig0028725:33017-33036 | Msa1439210:intron | 30.0% |
| ! | TTGGTGTAGCTTTTATAGTA+GGG | + | tig0028725:33018-33037 | Msa1439210:intron | 30.0% |
| TACCTCTAAATCTCTTCTAA+TGG | - | tig0028725:33189-33208 | None:intergenic | 30.0% | |
| AGAAGAGATTTAGAGGTAAA+TGG | + | tig0028725:33191-33210 | Msa1439210:intron | 30.0% | |
| TTGTGTACAACTAATGTAAG+TGG | + | tig0028725:33526-33545 | Msa1439210:intron | 30.0% | |
| TGTGTACAACTAATGTAAGT+GGG | + | tig0028725:33527-33546 | Msa1439210:intron | 30.0% | |
| ! | TCTAAAACTAAGATGATCAG+AGG | - | tig0028725:33912-33931 | None:intergenic | 30.0% |
| TTGACCAAGTATCTTCTTAA+TGG | - | tig0028725:34036-34055 | None:intergenic | 30.0% | |
| AGGAAAAGATGAATAAGCAA+AGG | + | tig0028725:34078-34097 | Msa1439210:CDS | 30.0% | |
| GGAAAAGATGAATAAGCAAA+GGG | + | tig0028725:34079-34098 | Msa1439210:CDS | 30.0% | |
| AAACAATATAGGAAGAAGGT+TGG | - | tig0028725:34138-34157 | None:intergenic | 30.0% | |
| GTTGAAACAATATAGGAAGA+AGG | - | tig0028725:34142-34161 | None:intergenic | 30.0% | |
| ! | TATATTTTGCAAGACTTGGA+AGG | + | tig0028725:34630-34649 | Msa1439210:three_prime_UTR | 30.0% |
| TTGAGACAAATAGGTCTATT+TGG | - | tig0028725:34693-34712 | None:intergenic | 30.0% | |
| GACAAAGAATTGAGACAAAT+AGG | - | tig0028725:34702-34721 | None:intergenic | 30.0% | |
| ! | GACTTGTTTGTGATACAAAG+AGG | - | tig0028725:30735-30754 | None:intergenic | 35.0% |
| !!! | CCGGTTAAGTTTTGATTTTC+CGG | - | tig0028725:30774-30793 | None:intergenic | 35.0% |
| CCGGAAAATCAAAACTTAAC+CGG | + | tig0028725:30771-30790 | Msa1439210:five_prime_UTR | 35.0% | |
| ATTGCATCACAATTAACCCT+AGG | - | tig0028725:31060-31079 | None:intergenic | 35.0% | |
| ATTATTACCTTAGCATTGCG+AGG | - | tig0028725:31249-31268 | None:intergenic | 35.0% | |
| AATGCAAAGTGGTCTATGTT+CGG | - | tig0028725:31511-31530 | None:intergenic | 35.0% | |
| ! | AAAGTGAGTTGAATGCAAAG+TGG | - | tig0028725:31522-31541 | None:intergenic | 35.0% |
| AATTCATCCAAGTGCATGTT+TGG | - | tig0028725:31590-31609 | None:intergenic | 35.0% | |
| GTATTTGCAAGAGCTTCTAT+TGG | + | tig0028725:31665-31684 | Msa1439210:intron | 35.0% | |
| TGGTATGTACATGATTTCGT+GGG | - | tig0028725:31763-31782 | None:intergenic | 35.0% | |
| ATGGTATGTACATGATTTCG+TGG | - | tig0028725:31764-31783 | None:intergenic | 35.0% | |
| TGGGTCCCACTAAATTTATA+TGG | - | tig0028725:31783-31802 | None:intergenic | 35.0% | |
| CGCTCTTATGATAAAAAGAG+AGG | + | tig0028725:31977-31996 | Msa1439210:CDS | 35.0% | |
| TATGATAAAAAGAGAGGCCA+TGG | + | tig0028725:31983-32002 | Msa1439210:CDS | 35.0% | |
| ATGATAAAAAGAGAGGCCAT+GGG | + | tig0028725:31984-32003 | Msa1439210:CDS | 35.0% | |
| ACAATTATGATTATTGCGGG+TGG | - | tig0028725:32392-32411 | None:intergenic | 35.0% | |
| ATGTCAATAATGCTTGCAAC+TGG | - | tig0028725:32448-32467 | None:intergenic | 35.0% | |
| ! | CTCGATTTAACTTATGGTAG+GGG | - | tig0028725:32632-32651 | None:intergenic | 35.0% |
| ACAAAGTGCAAGTTTAGCAA+AGG | + | tig0028725:32655-32674 | Msa1439210:intron | 35.0% | |
| GGAGATATTAACCTTTGAGT+GGG | + | tig0028725:32748-32767 | Msa1439210:intron | 35.0% | |
| ATATTAACCTTTGAGTGGGA+TGG | + | tig0028725:32752-32771 | Msa1439210:intron | 35.0% | |
| ! | AGCTTTTATAGTAGGGAACA+TGG | + | tig0028725:33025-33044 | Msa1439210:intron | 35.0% |
| AGCCATTAGAAGAGATTTAG+AGG | + | tig0028725:33184-33203 | Msa1439210:intron | 35.0% | |
| !! | ATATAGGTAGGTTGGTTACA+TGG | - | tig0028725:33275-33294 | None:intergenic | 35.0% |
| ATGTAACCAACCTACCTATA+TGG | + | tig0028725:33274-33293 | Msa1439210:intron | 35.0% | |
| ACAACAAGCCATTAACCTAT+AGG | - | tig0028725:33306-33325 | None:intergenic | 35.0% | |
| TCATACTGAGTTACGAAACA+AGG | - | tig0028725:33666-33685 | None:intergenic | 35.0% | |
| TTGTTTCGTAACTCAGTATG+AGG | + | tig0028725:33665-33684 | Msa1439210:intron | 35.0% | |
| GACATTGTATGCATATCTCT+AGG | + | tig0028725:33736-33755 | Msa1439210:intron | 35.0% | |
| TAAAAAGAGCAAGTTGTCAG+AGG | + | tig0028725:33798-33817 | Msa1439210:CDS | 35.0% | |
| ACGAAAAATTCAAGCTGAGA+AGG | + | tig0028725:33855-33874 | Msa1439210:CDS | 35.0% | |
| CTCTCACATTGTGTTTATGT+AGG | + | tig0028725:34004-34023 | Msa1439210:intron | 35.0% | |
| GTGTTTGATGCTAGATTGAA+GGG | - | tig0028725:34209-34228 | None:intergenic | 35.0% | |
| AGTGTTTGATGCTAGATTGA+AGG | - | tig0028725:34210-34229 | None:intergenic | 35.0% | |
| AAAGTTACTACGGTTCCATT+GGG | - | tig0028725:34251-34270 | None:intergenic | 35.0% | |
| AAAAGTTACTACGGTTCCAT+TGG | - | tig0028725:34252-34271 | None:intergenic | 35.0% | |
| GACATTGTTTGGAAGATACT+TGG | - | tig0028725:34293-34312 | None:intergenic | 35.0% | |
| TCTTCCAAACAATGTCTAAC+AGG | + | tig0028725:34297-34316 | Msa1439210:CDS | 35.0% | |
| TGTACCTGTTAGACATTGTT+TGG | - | tig0028725:34304-34323 | None:intergenic | 35.0% | |
| TTGTAAGCATTAGTGCAGTT+TGG | - | tig0028725:34495-34514 | None:intergenic | 35.0% | |
| GCACTAATGCTTACAAGTAT+CGG | + | tig0028725:34499-34518 | Msa1439210:CDS | 35.0% | |
| CACTAATGCTTACAAGTATC+GGG | + | tig0028725:34500-34519 | Msa1439210:CDS | 35.0% | |
| ! | AATTTTTCCACATATCCTCC+TGG | - | tig0028725:34668-34687 | None:intergenic | 35.0% |
| ! | TTGATTTTCCGGAGTTCAGT+GGG | - | tig0028725:30763-30782 | None:intergenic | 40.0% |
| !! | TTTGATTTTCCGGAGTTCAG+TGG | - | tig0028725:30764-30783 | None:intergenic | 40.0% |
| ! | CAATTAACCCTAGGTTTTCG+TGG | - | tig0028725:31051-31070 | None:intergenic | 40.0% |
| ! | TATCGGTTATCAATGCATGC+AGG | + | tig0028725:31934-31953 | Msa1439210:intron | 40.0% |
| TGATAAAAAGAGAGGCCATG+GGG | + | tig0028725:31985-32004 | Msa1439210:CDS | 40.0% | |
| GGTGTTTGTAAAGATGCATC+AGG | + | tig0028725:32247-32266 | Msa1439210:CDS | 40.0% | |
| TGCATCAGGAAAGAACTATG+AGG | + | tig0028725:32261-32280 | Msa1439210:CDS | 40.0% | |
| CAGGAAAGAACTATGAGGAT+CGG | + | tig0028725:32266-32285 | Msa1439210:CDS | 40.0% | |
| AGGAAAGAACTATGAGGATC+GGG | + | tig0028725:32267-32286 | Msa1439210:CDS | 40.0% | |
| AAACCAACAGATTCCCTCTT+TGG | - | tig0028725:32349-32368 | None:intergenic | 40.0% | |
| TCTTTCAAAGATGCGCTATC+TGG | + | tig0028725:32421-32440 | Msa1439210:CDS | 40.0% | |
| CTTTCAAAGATGCGCTATCT+GGG | + | tig0028725:32422-32441 | Msa1439210:CDS | 40.0% | |
| GCAAGCATTATTGACATCTC+AGG | + | tig0028725:32451-32470 | Msa1439210:CDS | 40.0% | |
| AGCATTATTGACATCTCAGG+TGG | + | tig0028725:32454-32473 | Msa1439210:intron | 40.0% | |
| TATTGACATCTCAGGTGGTT+TGG | + | tig0028725:32459-32478 | Msa1439210:intron | 40.0% | |
| ! | GATTTAACTTATGGTAGGGG+CGG | - | tig0028725:32629-32648 | None:intergenic | 40.0% |
| AGTCACTTCGTATGGAATCA+AGG | - | tig0028725:32717-32736 | None:intergenic | 40.0% | |
| TGATTCCATACGAAGTGACT+AGG | + | tig0028725:32717-32736 | Msa1439210:intron | 40.0% | |
| TATCTCCTAGTCACTTCGTA+TGG | - | tig0028725:32725-32744 | None:intergenic | 40.0% | |
| GGGAGATATTAACCTTTGAG+TGG | + | tig0028725:32747-32766 | Msa1439210:intron | 40.0% | |
| ATTTCATCCATCCCACTCAA+AGG | - | tig0028725:32762-32781 | None:intergenic | 40.0% | |
| TTGAGTGGGATGGATGAAAT+AGG | + | tig0028725:32762-32781 | Msa1439210:intron | 40.0% | |
| CAGTGTCACAAAGATCTCAA+TGG | + | tig0028725:32926-32945 | Msa1439210:intron | 40.0% | |
| CAAAGATCTCAATGGTGCAA+TGG | + | tig0028725:32934-32953 | Msa1439210:intron | 40.0% | |
| ! | AGTGGATTTAGCAAGTTACG+AGG | + | tig0028725:33064-33083 | Msa1439210:intron | 40.0% |
| CTGATGAGGAAAATACTAGC+TGG | + | tig0028725:33108-33127 | Msa1439210:intron | 40.0% | |
| AGAGGTAAATGGTCTCATGT+TGG | + | tig0028725:33202-33221 | Msa1439210:intron | 40.0% | |
| TGAGATCCATATAGGTAGGT+TGG | - | tig0028725:33283-33302 | None:intergenic | 40.0% | |
| TAGGTGAGATCCATATAGGT+AGG | - | tig0028725:33287-33306 | None:intergenic | 40.0% | |
| CCTATAGGTGAGATCCATAT+AGG | - | tig0028725:33291-33310 | None:intergenic | 40.0% | |
| CCTATATGGATCTCACCTAT+AGG | + | tig0028725:33288-33307 | Msa1439210:intron | 40.0% | |
| GGATCTCACCTATAGGTTAA+TGG | + | tig0028725:33295-33314 | Msa1439210:intron | 40.0% | |
| ACTGAGTTACGAAACAAGGT+GGG | - | tig0028725:33662-33681 | None:intergenic | 40.0% | |
| TACTGAGTTACGAAACAAGG+TGG | - | tig0028725:33663-33682 | None:intergenic | 40.0% | |
| ACAGCTAATCAAGAAAGCTG+AGG | + | tig0028725:33822-33841 | Msa1439210:CDS | 40.0% | |
| GCAGCCATTAAGAAGATACT+TGG | + | tig0028725:34029-34048 | Msa1439210:CDS | 40.0% | |
| CGTAAACTGTATCAAGACCT+TGG | - | tig0028725:34114-34133 | None:intergenic | 40.0% | |
| ! | TTCTAACATGTTGGTTGTGC+AGG | + | tig0028725:34169-34188 | Msa1439210:intron | 40.0% |
| TAGCATCAAACACTGTTCGA+TGG | + | tig0028725:34216-34235 | Msa1439210:CDS | 40.0% | |
| !! | AAACACTGTTCGATGGACTA+TGG | + | tig0028725:34223-34242 | Msa1439210:CDS | 40.0% |
| !! | AACACTGTTCGATGGACTAT+GGG | + | tig0028725:34224-34243 | Msa1439210:CDS | 40.0% |
| TAACAACCAAGACTGCAAAG+GGG | - | tig0028725:34543-34562 | None:intergenic | 40.0% | |
| GTAACAACCAAGACTGCAAA+GGG | - | tig0028725:34544-34563 | None:intergenic | 40.0% | |
| TGTAACAACCAAGACTGCAA+AGG | - | tig0028725:34545-34564 | None:intergenic | 40.0% | |
| AAGGACTAACATGCAATCAC+AGG | - | tig0028725:34591-34610 | None:intergenic | 40.0% | |
| GACTTGGAAGGTTTGTGATT+TGG | + | tig0028725:34642-34661 | Msa1439210:three_prime_UTR | 40.0% | |
| ! | TTCCTTGCTACGGTGTTTTC+CGG | - | tig0028725:30793-30812 | None:intergenic | 45.0% |
| AAAGGAAAACCTGGACATCG+TGG | - | tig0028725:30831-30850 | None:intergenic | 45.0% | |
| TGATGTGCCACGAAAACCTA+GGG | + | tig0028725:31041-31060 | Msa1439210:CDS | 45.0% | |
| TACCTTAGCATTGCGAGGAT+CGG | - | tig0028725:31244-31263 | None:intergenic | 45.0% | |
| ! | TGTATGTTTGGTTCCACGTC+TGG | + | tig0028725:31334-31353 | Msa1439210:intron | 45.0% |
| ! | CAAGTGCATGTTTGGTTCAG+TGG | - | tig0028725:31582-31601 | None:intergenic | 45.0% |
| CACTGAACCAAACATGCACT+TGG | + | tig0028725:31580-31599 | Msa1439210:intron | 45.0% | |
| GCTTAACCAATTTGTCCCCA+TGG | - | tig0028725:32003-32022 | None:intergenic | 45.0% | |
| AGTAACTCGCTTGCTCTTAC+GGG | - | tig0028725:32095-32114 | None:intergenic | 45.0% | |
| CAGTAACTCGCTTGCTCTTA+CGG | - | tig0028725:32096-32115 | None:intergenic | 45.0% | |
| AGTTACTGAGAGATGTGCCA+TGG | + | tig0028725:32108-32127 | Msa1439210:CDS | 45.0% | |
| AAGAGGAGTTAGTCGCCATA+AGG | + | tig0028725:32198-32217 | Msa1439210:CDS | 45.0% | |
| AGTCGCCATAAGGACAATCA+AGG | + | tig0028725:32208-32227 | Msa1439210:CDS | 45.0% | |
| TGCCTCCTTGATTGTCCTTA+TGG | - | tig0028725:32216-32235 | None:intergenic | 45.0% | |
| TAGAAGGGAAGAAGCCAAAG+AGG | + | tig0028725:32332-32351 | Msa1439210:CDS | 45.0% | |
| AGAAGGGAAGAAGCCAAAGA+GGG | + | tig0028725:32333-32352 | Msa1439210:CDS | 45.0% | |
| AAGCCAAAGAGGGAATCTGT+TGG | + | tig0028725:32343-32362 | Msa1439210:CDS | 45.0% | |
| ACGAAGTGACTAGGAGATAG+AGG | + | tig0028725:32726-32745 | Msa1439210:intron | 45.0% | |
| CGAAGTGACTAGGAGATAGA+GGG | + | tig0028725:32727-32746 | Msa1439210:intron | 45.0% | |
| !! | TCAATGGTGCAATGGACTAG+TGG | + | tig0028725:32942-32961 | Msa1439210:intron | 45.0% |
| !! | CAGCGTTGAGCTGTTTCTAT+AGG | - | tig0028725:33091-33110 | None:intergenic | 45.0% |
| GGTCTCATGTTGGACCTAAT+AGG | + | tig0028725:33212-33231 | Msa1439210:intron | 45.0% | |
| CTAATAGGCTCGTGCATGTT+GGG | + | tig0028725:33227-33246 | Msa1439210:intron | 45.0% | |
| CTGAGTTACGAAACAAGGTG+GGG | - | tig0028725:33661-33680 | None:intergenic | 45.0% | |
| TACTTGGTCAAGATCCTGCT+AGG | + | tig0028725:34045-34064 | Msa1439210:CDS | 45.0% | |
| TCCTGCTAGGAAGAAGAAAG+AGG | + | tig0028725:34058-34077 | Msa1439210:CDS | 45.0% | |
| TCCTCTTTCTTCTTCCTAGC+AGG | - | tig0028725:34062-34081 | None:intergenic | 45.0% | |
| GCAAAGGGATGAAATAGCCA+AGG | + | tig0028725:34094-34113 | Msa1439210:CDS | 45.0% | |
| !!! | TACAAATTTTAAATTAATAA+TGG | + | tig0028725:33419-33438 | Msa1439210:intron | 5.0% |
| AACCGGAAAACACCGTAGCA+AGG | + | tig0028725:30788-30807 | Msa1439210:five_prime_UTR | 50.0% | |
| !! | TGTGGTGGGTTTCCTTGCTA+CGG | - | tig0028725:30803-30822 | None:intergenic | 50.0% |
| ACATCGTGGCTGTTTGTGGT+GGG | - | tig0028725:30817-30836 | None:intergenic | 50.0% | |
| GTGATGTGCCACGAAAACCT+AGG | + | tig0028725:31040-31059 | Msa1439210:CDS | 50.0% | |
| TTCCGATCCTCGCAATGCTA+AGG | + | tig0028725:31239-31258 | Msa1439210:CDS | 50.0% | |
| ! | ATGTTTGGTTCCACGTCTGG+TGG | + | tig0028725:31337-31356 | Msa1439210:intron | 50.0% |
| TCTATTGTCTCCACCAGACG+TGG | - | tig0028725:31350-31369 | None:intergenic | 50.0% | |
| TGAGAGATGTGCCATGGATG+TGG | + | tig0028725:32114-32133 | Msa1439210:CDS | 50.0% | |
| GAGAGATGTGCCATGGATGT+GGG | + | tig0028725:32115-32134 | Msa1439210:CDS | 50.0% | |
| AGAGATGTGCCATGGATGTG+GGG | + | tig0028725:32116-32135 | Msa1439210:CDS | 50.0% | |
| CGCCATAAGGACAATCAAGG+AGG | + | tig0028725:32211-32230 | Msa1439210:CDS | 50.0% | |
| TTGCGGGTGGAATGCTTTCT+TGG | - | tig0028725:32379-32398 | None:intergenic | 50.0% | |
| GAAACAGCTCAACGCTGATG+AGG | + | tig0028725:33094-33113 | Msa1439210:intron | 50.0% | |
| CCAACATGCACGAGCCTATT+AGG | - | tig0028725:33229-33248 | None:intergenic | 50.0% | |
| CCTAATAGGCTCGTGCATGT+TGG | + | tig0028725:33226-33245 | Msa1439210:intron | 50.0% | |
| AGTTACGAAACAAGGTGGGG+AGG | - | tig0028725:33658-33677 | None:intergenic | 50.0% | |
| TTCAAGCTGAGAAGGCAGCT+AGG | + | tig0028725:33863-33882 | Msa1439210:CDS | 50.0% | |
| TCAAGCTGAGAAGGCAGCTA+GGG | + | tig0028725:33864-33883 | Msa1439210:CDS | 50.0% | |
| GAGGAGTCACGTTCAAACCT+CGG | - | tig0028725:33893-33912 | None:intergenic | 50.0% | |
| ! | ACCTGCGCACTTTTCTCTTG+GGG | - | tig0028725:34472-34491 | None:intergenic | 50.0% |
| ! | GACCTGCGCACTTTTCTCTT+GGG | - | tig0028725:34473-34492 | None:intergenic | 50.0% |
| ! | GCAAAGGGGAAGCTTTGACT+TGG | - | tig0028725:34529-34548 | None:intergenic | 50.0% |
| AAGCTTCCCCTTTGCAGTCT+TGG | + | tig0028725:34534-34553 | Msa1439210:CDS | 50.0% | |
| ! | GGAAGGTTTGTGATTTGGCC+AGG | + | tig0028725:34647-34666 | Msa1439210:three_prime_UTR | 50.0% |
| ! | AGGTTTGTGATTTGGCCAGG+AGG | + | tig0028725:34650-34669 | Msa1439210:three_prime_UTR | 50.0% |
| GATTTGGCCAGGAGGATATG+TGG | + | tig0028725:34658-34677 | Msa1439210:three_prime_UTR | 50.0% | |
| GACATCGTGGCTGTTTGTGG+TGG | - | tig0028725:30818-30837 | None:intergenic | 55.0% | |
| CTGGACATCGTGGCTGTTTG+TGG | - | tig0028725:30821-30840 | None:intergenic | 55.0% | |
| CACAAACAGCCACGATGTCC+AGG | + | tig0028725:30819-30838 | Msa1439210:exon | 55.0% | |
| GCATTGCGAGGATCGGAAGA+AGG | - | tig0028725:31237-31256 | None:intergenic | 55.0% | |
| GAGAGGCCATGGGGACAAAT+TGG | + | tig0028725:31994-32013 | Msa1439210:CDS | 55.0% | |
| ATCGCTACACCCCACATCCA+TGG | - | tig0028725:32128-32147 | None:intergenic | 55.0% | |
| ! | CAAGGAGGCACAACAATGCG+TGG | + | tig0028725:32226-32245 | Msa1439210:CDS | 55.0% |
| ! | ATGTAATGCGAAGCACCCCC+CGG | + | tig0028725:33630-33649 | Msa1439210:intron | 55.0% |
| !! | CGATGGACTATGGGTCCCAA+TGG | + | tig0028725:34233-34252 | Msa1439210:CDS | 55.0% |
| ! | CCTGCGCACTTTTCTCTTGG+GGG | - | tig0028725:34471-34490 | None:intergenic | 55.0% |
| ! | GGACCTGCGCACTTTTCTCT+TGG | - | tig0028725:34474-34493 | None:intergenic | 55.0% |
| GTCGCAGTCCCACTGAACTC+CGG | + | tig0028725:30752-30771 | Msa1439210:five_prime_UTR | 60.0% | |
| GCGAGGATCGGAAGAAGGCT+TGG | - | tig0028725:31232-31251 | None:intergenic | 60.0% | |
| ! | TGTAATGCGAAGCACCCCCC+GGG | + | tig0028725:33631-33650 | Msa1439210:intron | 60.0% |
| AAACAAGGTGGGGAGGACCC+GGG | - | tig0028725:33651-33670 | None:intergenic | 60.0% | |
| GAAACAAGGTGGGGAGGACC+CGG | - | tig0028725:33652-33671 | None:intergenic | 60.0% | |
| AGCTGAGAAGGCAGCTAGGG+AGG | + | tig0028725:33867-33886 | Msa1439210:CDS | 60.0% | |
| ! | GCGCACTTTTCTCTTGGGGG+AGG | - | tig0028725:34468-34487 | None:intergenic | 60.0% |
| ! | CCCCCAAGAGAAAAGTGCGC+AGG | + | tig0028725:34468-34487 | Msa1439210:CDS | 60.0% |
| AACAAGGTGGGGAGGACCCG+GGG | - | tig0028725:33650-33669 | None:intergenic | 65.0% | |
| ACAAGGTGGGGAGGACCCGG+GGG | - | tig0028725:33649-33668 | None:intergenic | 70.0% | |
| GAAGGCAGCTAGGGAGGCCG+AGG | + | tig0028725:33873-33892 | Msa1439210:CDS | 70.0% | |
| CAAGGTGGGGAGGACCCGGG+GGG | - | tig0028725:33648-33667 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028725 | gene | 30638 | 34776 | 30638 | ID=Msa1439210;Name=Msa1439210 |
| tig0028725 | mRNA | 30638 | 34776 | 30638 | ID=Msa1439210-mRNA-1;Parent=Msa1439210;Name=Msa1439210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195|1|1|1|1|1|7|171|413 |
| tig0028725 | exon | 30638 | 30840 | 30638 | ID=Msa1439210-mRNA-1:exon:11630;Parent=Msa1439210-mRNA-1 |
| tig0028725 | exon | 31005 | 31260 | 31005 | ID=Msa1439210-mRNA-1:exon:11631;Parent=Msa1439210-mRNA-1 |
| tig0028725 | exon | 31956 | 32472 | 31956 | ID=Msa1439210-mRNA-1:exon:11632;Parent=Msa1439210-mRNA-1 |
| tig0028725 | exon | 33797 | 33894 | 33797 | ID=Msa1439210-mRNA-1:exon:11633;Parent=Msa1439210-mRNA-1 |
| tig0028725 | exon | 34026 | 34115 | 34026 | ID=Msa1439210-mRNA-1:exon:11634;Parent=Msa1439210-mRNA-1 |
| tig0028725 | exon | 34191 | 34318 | 34191 | ID=Msa1439210-mRNA-1:exon:11635;Parent=Msa1439210-mRNA-1 |
| tig0028725 | exon | 34461 | 34776 | 34461 | ID=Msa1439210-mRNA-1:exon:11636;Parent=Msa1439210-mRNA-1 |
| tig0028725 | five_prime_UTR | 30638 | 30832 | 30638 | ID=Msa1439210-mRNA-1:five_prime_utr;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 30833 | 30840 | 30833 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 31005 | 31260 | 31005 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 31956 | 32472 | 31956 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 33797 | 33894 | 33797 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 34026 | 34115 | 34026 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 34191 | 34318 | 34191 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | CDS | 34461 | 34605 | 34461 | ID=Msa1439210-mRNA-1:cds;Parent=Msa1439210-mRNA-1 |
| tig0028725 | three_prime_UTR | 34606 | 34776 | 34606 | ID=Msa1439210-mRNA-1:three_prime_utr;Parent=Msa1439210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
