Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419090 | A0A396IFQ4 | 96.154 | 416 | 13 | 1 | 1 | 413 | 1 | 416 | 0.0 | 775 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa1419090 | 0.803214 | 3.878711e-49 | -8.615850e-47 |
| Msa0027540 | Msa1419090 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0059960 | Msa1419090 | -0.820037 | 8.473146e-53 | -8.615850e-47 |
| Msa1419090 | Msa1439210 | 0.973385 | 2.438780e-136 | -8.615850e-47 |
| Msa1419090 | Msa1456810 | 0.808160 | 3.550748e-50 | -8.615850e-47 |
| Msa0674220 | Msa1419090 | 0.802513 | 5.412973e-49 | -8.615850e-47 |
| Msa0685540 | Msa1419090 | 0.811161 | 8.040490e-51 | -8.615850e-47 |
| Msa0707780 | Msa1419090 | 0.810211 | 1.290069e-50 | -8.615850e-47 |
| Msa0780140 | Msa1419090 | 0.800675 | 1.289355e-48 | -8.615850e-47 |
| Msa0783340 | Msa1419090 | 0.822456 | 2.346212e-53 | -8.615850e-47 |
| Msa0123170 | Msa1419090 | 0.821730 | 3.456661e-53 | -8.615850e-47 |
| Msa0149500 | Msa1419090 | 0.806036 | 9.995140e-50 | -8.615850e-47 |
| Msa0159750 | Msa1419090 | 0.802046 | 6.754852e-49 | -8.615850e-47 |
| Msa1254770 | Msa1419090 | 0.803154 | 3.990773e-49 | -8.615850e-47 |
| Msa1254800 | Msa1419090 | 0.803969 | 2.704984e-49 | -8.615850e-47 |
| Msa0382560 | Msa1419090 | 0.810253 | 1.263458e-50 | -8.615850e-47 |
| Msa0427090 | Msa1419090 | 0.803170 | 3.960932e-49 | -8.615850e-47 |
| Msa1018720 | Msa1419090 | 0.802305 | 5.976672e-49 | -8.615850e-47 |
| Msa1024140 | Msa1419090 | 0.814660 | 1.375782e-51 | -8.615850e-47 |
| Msa0298940 | Msa1419090 | 0.832611 | 8.564584e-56 | -8.615850e-47 |
| Msa0298970 | Msa1419090 | 0.812449 | 4.215630e-51 | -8.615850e-47 |
| Msa0301180 | Msa1419090 | 0.807131 | 5.872579e-50 | -8.615850e-47 |
| Msa0320540 | Msa1419090 | 0.813265 | 2.794215e-51 | -8.615850e-47 |
| Msa1107970 | Msa1419090 | 0.805885 | 1.075527e-49 | -8.615850e-47 |
| Msa1218670 | Msa1419090 | 0.970239 | 2.574742e-131 | -8.615850e-47 |
| Msa1223460 | Msa1419090 | 0.807167 | 5.768997e-50 | -8.615850e-47 |
| Msa0524050 | Msa1419090 | 0.805049 | 1.610555e-49 | -8.615850e-47 |
| Msa0524120 | Msa1419090 | 0.800498 | 1.401046e-48 | -8.615850e-47 |
| Msa0525240 | Msa1419090 | 0.800348 | 1.503171e-48 | -8.615850e-47 |
| Msa0574170 | Msa1419090 | 0.803589 | 3.243356e-49 | -8.615850e-47 |
| Msa0575250 | Msa1419090 | 0.805583 | 1.244635e-49 | -8.615850e-47 |
| Msa0576420 | Msa1419090 | 0.824512 | 7.752359e-54 | -8.615850e-47 |
| Msa0846640 | Msa1419090 | 0.801897 | 7.249331e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419090 | MtrunA17_Chr4g0068311 | 96.154 | 416 | 13 | 1 | 1 | 413 | 1 | 416 | 0.0 | 775 |
| Msa1419090 | MtrunA17_Chr7g0270071 | 38.756 | 418 | 191 | 11 | 52 | 406 | 144 | 559 | 8.18e-65 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419090 | AT3G06660.1 | 42.318 | 371 | 180 | 11 | 55 | 407 | 66 | 420 | 8.58e-62 | 206 |
| Msa1419090 | AT2G47350.1 | 38.760 | 387 | 183 | 13 | 53 | 409 | 123 | 485 | 1.02e-55 | 191 |
| Msa1419090 | AT1G56460.1 | 62.676 | 142 | 53 | 0 | 262 | 403 | 359 | 500 | 1.02e-51 | 181 |
| Msa1419090 | AT1G56460.2 | 62.676 | 142 | 53 | 0 | 262 | 403 | 389 | 530 | 2.36e-51 | 181 |
| Msa1419090 | AT1G56460.3 | 49.194 | 124 | 63 | 0 | 262 | 385 | 359 | 482 | 1.07e-25 | 109 |
Find 102 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCAAGTATCTTCTTAA+TGG | 0.185993 | tig0024668:-59741 | None:intergenic |
| AAGAAGCTTAAACTCAAATT+TGG | 0.203722 | tig0024668:+56891 | Msa1419090:CDS |
| TTGAGACAAATAGGTCTATT+TGG | 0.207114 | tig0024668:-60398 | None:intergenic |
| TGCCTCCTTGATTGTCCTTA+TGG | 0.246866 | tig0024668:-57921 | None:intergenic |
| TCTTTCAAAGATGCGCTATC+TGG | 0.274602 | tig0024668:+58129 | Msa1419090:CDS |
| TAGTCCTTGTAAATAGTAAT+TGG | 0.287824 | tig0024668:+60311 | Msa1419090:exon |
| AAGCTTCCCCTTTGCAGTCT+TGG | 0.297324 | tig0024668:+60242 | Msa1419090:CDS |
| CAGTAACTCGCTTGCTCTTA+CGG | 0.297893 | tig0024668:-57801 | None:intergenic |
| AAACACTGTTCGATGGACTA+TGG | 0.302142 | tig0024668:+59931 | Msa1419090:CDS |
| TTGCGGGTGGAATGCTTTCT+TGG | 0.309324 | tig0024668:-58084 | None:intergenic |
| AAACCAACAGATTCCCTCTT+TGG | 0.309756 | tig0024668:-58054 | None:intergenic |
| GACTTGGAAGGTTTGTGATT+TGG | 0.321358 | tig0024668:+60350 | Msa1419090:three_prime_UTR |
| GAGAGGCCATGGGGACAAAT+TGG | 0.343442 | tig0024668:+57702 | Msa1419090:CDS |
| TCCTCTTTCTTCTTCCTAGC+AGG | 0.346247 | tig0024668:-59767 | None:intergenic |
| GCAATATTTCAGCATTACTT+TGG | 0.348288 | tig0024668:+56783 | Msa1419090:CDS |
| AGTGATGAATCAATATTAGA+AGG | 0.348762 | tig0024668:+58024 | Msa1419090:CDS |
| TGTACCTGTTAGACATTGTT+TGG | 0.357620 | tig0024668:-60009 | None:intergenic |
| CAATATTTCAGCATTACTTT+GGG | 0.379707 | tig0024668:+56784 | Msa1419090:CDS |
| TGAACAATTATGATTATTGC+GGG | 0.388645 | tig0024668:-58100 | None:intergenic |
| GATACAATTGTTGTTTCTGA+TGG | 0.391441 | tig0024668:+56846 | Msa1419090:CDS |
| TTGTAAGCATTAGTGCAGTT+TGG | 0.393740 | tig0024668:-60200 | None:intergenic |
| TCTTCCAAACAATGTCTAAC+AGG | 0.396325 | tig0024668:+60005 | Msa1419090:CDS |
| GACAAAGAATTGAGACAAAT+AGG | 0.409683 | tig0024668:-60407 | None:intergenic |
| AGTAACTCGCTTGCTCTTAC+GGG | 0.433532 | tig0024668:-57800 | None:intergenic |
| ATTGATTCATCACTTGATGT+AGG | 0.433917 | tig0024668:-58015 | None:intergenic |
| CCGGAAAATCAAAACTTAAC+CGG | 0.434773 | tig0024668:+56479 | Msa1419090:five_prime_UTR |
| CTGGACATCGTGGCTGTTTG+TGG | 0.450910 | tig0024668:-56526 | None:intergenic |
| GTAACAACCAAGACTGCAAA+GGG | 0.456962 | tig0024668:-60249 | None:intergenic |
| AAAAGTTACTACGGTTCCAT+TGG | 0.465504 | tig0024668:-59957 | None:intergenic |
| GCACTAATGCTTACAAGTAT+CGG | 0.471350 | tig0024668:+60207 | Msa1419090:CDS |
| CACTAATGCTTACAAGTATC+GGG | 0.471763 | tig0024668:+60208 | Msa1419090:CDS |
| GGAAGGTTTGTGATTTGGCC+AGG | 0.475821 | tig0024668:+60355 | Msa1419090:three_prime_UTR |
| AGTGTTTGATGCTAGATTGA+AGG | 0.479209 | tig0024668:-59915 | None:intergenic |
| CTTTCAAAGATGCGCTATCT+GGG | 0.481686 | tig0024668:+58130 | Msa1419090:CDS |
| AAGCTTAAACTCAAATTTGG+AGG | 0.488206 | tig0024668:+56894 | Msa1419090:CDS |
| GCAAGCATTATTGACATCTC+AGG | 0.488483 | tig0024668:+58159 | Msa1419090:CDS |
| AAATCCAATTACTATTTACA+AGG | 0.489122 | tig0024668:-60315 | None:intergenic |
| AAAGTTACTACGGTTCCATT+GGG | 0.491895 | tig0024668:-59956 | None:intergenic |
| GACATTGTTTGGAAGATACT+TGG | 0.494136 | tig0024668:-59998 | None:intergenic |
| GGAAAAGATGAATAAGCAAA+GGG | 0.498530 | tig0024668:+59787 | Msa1419090:CDS |
| GAAGGCAGCTAGGGAGGCCG+AGG | 0.498972 | tig0024668:+59581 | Msa1419090:CDS |
| TAGAAGGGAAGAAGCCAAAG+AGG | 0.498989 | tig0024668:+58040 | Msa1419090:CDS |
| AGGAAAGAACTATGAGGATC+GGG | 0.505453 | tig0024668:+57975 | Msa1419090:CDS |
| GTGTTTGATGCTAGATTGAA+GGG | 0.505698 | tig0024668:-59914 | None:intergenic |
| AACACTGTTCGATGGACTAT+GGG | 0.508722 | tig0024668:+59932 | Msa1419090:CDS |
| TCAAGCTGAGAAGGCAGCTA+GGG | 0.513394 | tig0024668:+59572 | Msa1419090:CDS |
| GCATTGCGAGGATCGGAAGA+AGG | 0.519451 | tig0024668:-56942 | None:intergenic |
| TGAGAGATGTGCCATGGATG+TGG | 0.520572 | tig0024668:+57822 | Msa1419090:CDS |
| AAGAGGAGTTAGTCGCCATA+AGG | 0.521573 | tig0024668:+57906 | Msa1419090:CDS |
| GCAAAGGGGAAGCTTTGACT+TGG | 0.523120 | tig0024668:-60234 | None:intergenic |
| TTGATTCATCACTTGATGTA+GGG | 0.523562 | tig0024668:-58014 | None:intergenic |
| TACCTTAGCATTGCGAGGAT+CGG | 0.526162 | tig0024668:-56949 | None:intergenic |
| GACATCGTGGCTGTTTGTGG+TGG | 0.526939 | tig0024668:-56523 | None:intergenic |
| AGGAAAAGATGAATAAGCAA+AGG | 0.527756 | tig0024668:+59786 | Msa1419090:CDS |
| ATGTCAATAATGCTTGCAAC+TGG | 0.529585 | tig0024668:-58153 | None:intergenic |
| GCGAGGATCGGAAGAAGGCT+TGG | 0.529979 | tig0024668:-56937 | None:intergenic |
| GACCTAAAATTAACTGGACA+TGG | 0.532237 | tig0024668:-60472 | None:intergenic |
| GGTGTTTGTAAAGATGCATC+AGG | 0.533508 | tig0024668:+57955 | Msa1419090:CDS |
| CACAAACAGCCACGATGTCC+AGG | 0.541779 | tig0024668:+56527 | Msa1419090:exon |
| TTCAAGCTGAGAAGGCAGCT+AGG | 0.542356 | tig0024668:+59571 | Msa1419090:CDS |
| ATTGCATCACAATTAACCCT+AGG | 0.545996 | tig0024668:-56765 | None:intergenic |
| TGTGGTGGGTTTCCTTGCTA+CGG | 0.547187 | tig0024668:-56508 | None:intergenic |
| TTCCGATCCTCGCAATGCTA+AGG | 0.547346 | tig0024668:+56947 | Msa1419090:CDS |
| CTGAACAATTATGATTATTG+CGG | 0.553988 | tig0024668:-58101 | None:intergenic |
| GCTTAACCAATTTGTCCCCA+TGG | 0.555543 | tig0024668:-57708 | None:intergenic |
| CAGGAAAGAACTATGAGGAT+CGG | 0.556559 | tig0024668:+57974 | Msa1419090:CDS |
| GAATCATTCACATAAAAGAA+AGG | 0.556754 | tig0024668:+57762 | Msa1419090:CDS |
| GTGATGAATCAATATTAGAA+GGG | 0.559877 | tig0024668:+58025 | Msa1419090:CDS |
| GCAGCCATTAAGAAGATACT+TGG | 0.560222 | tig0024668:+59737 | Msa1419090:CDS |
| ACATCGTGGCTGTTTGTGGT+GGG | 0.562752 | tig0024668:-56522 | None:intergenic |
| TCCTGCTAGGAAGAAGAAAG+AGG | 0.563807 | tig0024668:+59766 | Msa1419090:CDS |
| GATTTGGCCAGGAGGATATG+TGG | 0.565880 | tig0024668:+60366 | Msa1419090:three_prime_UTR |
| AGCTGAGAAGGCAGCTAGGG+AGG | 0.566469 | tig0024668:+59575 | Msa1419090:CDS |
| CGATGGACTATGGGTCCCAA+TGG | 0.570559 | tig0024668:+59941 | Msa1419090:CDS |
| GAGAGATGTGCCATGGATGT+GGG | 0.575263 | tig0024668:+57823 | Msa1419090:CDS |
| ATCGCTACACCCCACATCCA+TGG | 0.577901 | tig0024668:-57833 | None:intergenic |
| AAGGACTAACATGCAATCAC+AGG | 0.578464 | tig0024668:-60296 | None:intergenic |
| AGAAGGGAAGAAGCCAAAGA+GGG | 0.585885 | tig0024668:+58041 | Msa1419090:CDS |
| AGTCGCCATAAGGACAATCA+AGG | 0.586794 | tig0024668:+57916 | Msa1419090:CDS |
| TAGCATCAAACACTGTTCGA+TGG | 0.594632 | tig0024668:+59924 | Msa1419090:CDS |
| GTCGCAGTCCCACTGAACTC+CGG | 0.603946 | tig0024668:+56460 | Msa1419090:five_prime_UTR |
| GACTTGTTTGTGATACAAAG+AGG | 0.609154 | tig0024668:-56440 | None:intergenic |
| TGTAACAACCAAGACTGCAA+AGG | 0.609478 | tig0024668:-60250 | None:intergenic |
| ACAATTATGATTATTGCGGG+TGG | 0.613619 | tig0024668:-58097 | None:intergenic |
| TACTTGGTCAAGATCCTGCT+AGG | 0.618102 | tig0024668:+59753 | Msa1419090:CDS |
| AACCGGAAAACACCGTAGCA+AGG | 0.618481 | tig0024668:+56496 | Msa1419090:five_prime_UTR |
| ACTTGTTTGTGATACAAAGA+GGG | 0.621565 | tig0024668:-56439 | None:intergenic |
| GCAAAGGGATGAAATAGCCA+AGG | 0.623359 | tig0024668:+59802 | Msa1419090:CDS |
| ATTATTACCTTAGCATTGCG+AGG | 0.624163 | tig0024668:-56954 | None:intergenic |
| TGATGTGCCACGAAAACCTA+GGG | 0.628689 | tig0024668:+56749 | Msa1419090:CDS |
| AAGCCAAAGAGGGAATCTGT+TGG | 0.631087 | tig0024668:+58051 | Msa1419090:CDS |
| TGCATCAGGAAAGAACTATG+AGG | 0.633064 | tig0024668:+57969 | Msa1419090:CDS |
| GTGATGTGCCACGAAAACCT+AGG | 0.636600 | tig0024668:+56748 | Msa1419090:CDS |
| CAAGGAGGCACAACAATGCG+TGG | 0.648200 | tig0024668:+57934 | Msa1419090:CDS |
| ACCTAAAATTAACTGGACAT+GGG | 0.651447 | tig0024668:-60471 | None:intergenic |
| AGGTTTGTGATTTGGCCAGG+AGG | 0.665147 | tig0024668:+60358 | Msa1419090:three_prime_UTR |
| AGTTACTGAGAGATGTGCCA+TGG | 0.668595 | tig0024668:+57816 | Msa1419090:CDS |
| ACAGCTAATCAAGAAAGCTG+AGG | 0.671432 | tig0024668:+59530 | Msa1419090:CDS |
| AGAGATGTGCCATGGATGTG+GGG | 0.675260 | tig0024668:+57824 | Msa1419090:CDS |
| CGCCATAAGGACAATCAAGG+AGG | 0.690105 | tig0024668:+57919 | Msa1419090:CDS |
| AAAGGAAAACCTGGACATCG+TGG | 0.698714 | tig0024668:-56536 | None:intergenic |
| TAACAACCAAGACTGCAAAG+GGG | 0.763481 | tig0024668:-60248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATATTAAATGAAT+TGG | - | tig0024668:57262-57281 | None:intergenic | 10.0% |
| !! | ACAATTATTATAGATAAAAT+TGG | + | tig0024668:58707-58726 | Msa1419090:intron | 10.0% |
| !!! | ACTAAAGAAATTTTGATTAA+TGG | + | tig0024668:56669-56688 | Msa1419090:intron | 15.0% |
| !!! | GAAAAATATTTTGTGTATAT+AGG | + | tig0024668:56691-56710 | Msa1419090:intron | 15.0% |
| !! | AATATTGCAAATTGAAATTA+TGG | + | tig0024668:57323-57342 | Msa1419090:intron | 15.0% |
| !! | TATAGTTGCATTATTATATA+TGG | - | tig0024668:57579-57598 | None:intergenic | 15.0% |
| !!! | TTTTATCTTGTTTGATTTCA+TGG | - | tig0024668:56400-56419 | None:intergenic | 20.0% |
| !! | AAAAATCAACTTACGAAATT+AGG | - | tig0024668:56625-56644 | None:intergenic | 20.0% |
| !! | TTCTTTAGTAATTAGTACTA+TGG | - | tig0024668:56658-56677 | None:intergenic | 20.0% |
| !! | TTATGAATTAAGTGTATGTT+TGG | + | tig0024668:57030-57049 | Msa1419090:intron | 20.0% |
| !!! | TAGAAAAAAATTGATTCTAG+AGG | + | tig0024668:57074-57093 | Msa1419090:intron | 20.0% |
| !!! | ATTTTTTACGCATTTTTACA+AGG | + | tig0024668:57187-57206 | Msa1419090:intron | 20.0% |
| !!! | AATTATGGTTCTTCAATTTT+CGG | + | tig0024668:57338-57357 | Msa1419090:intron | 20.0% |
| !! | TACATACCATATAAATTTAG+TGG | + | tig0024668:57482-57501 | Msa1419090:intron | 20.0% |
| !! | ACATACCATATAAATTTAGT+GGG | + | tig0024668:57483-57502 | Msa1419090:intron | 20.0% |
| !! | TATATTTCCTTCAGATAAAT+TGG | + | tig0024668:57595-57614 | Msa1419090:intron | 20.0% |
| !! | AAGCAAATAAAATAAGATCA+AGG | - | tig0024668:58228-58247 | None:intergenic | 20.0% |
| !! | ATAAAATTGTGAGATCTATA+AGG | - | tig0024668:59214-59233 | None:intergenic | 20.0% |
| !! | TAAAGTTTGTAGTATAACAT+TGG | + | tig0024668:59642-59661 | Msa1419090:intron | 20.0% |
| !! | AAAGTTTGTAGTATAACATT+GGG | + | tig0024668:59643-59662 | Msa1419090:intron | 20.0% |
| !!! | CTTTAAAGTTGAAACAATAT+AGG | - | tig0024668:59857-59876 | None:intergenic | 20.0% |
| !! | AAATGTTTAGAAGAAAATCA+AGG | - | tig0024668:60087-60106 | None:intergenic | 20.0% |
| !! | AAATCCAATTACTATTTACA+AGG | - | tig0024668:60318-60337 | None:intergenic | 20.0% |
| !!! | ATTTTATATTTTGCAAGACT+TGG | + | tig0024668:60334-60353 | Msa1419090:three_prime_UTR | 20.0% |
| ! | GACAGATATAAAATACGAAA+AGG | - | tig0024668:56557-56576 | None:intergenic | 25.0% |
| ! | CAATATTTCAGCATTACTTT+GGG | + | tig0024668:56784-56803 | Msa1419090:CDS | 25.0% |
| ! | AAGAAGCTTAAACTCAAATT+TGG | + | tig0024668:56891-56910 | Msa1419090:CDS | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | tig0024668:57100-57119 | Msa1419090:intron | 25.0% |
| !!! | GAATTGATTTTGACATGTTT+GGG | + | tig0024668:57101-57120 | Msa1419090:intron | 25.0% |
| ! | AACTTTACAGAGTTATACAA+AGG | - | tig0024668:57402-57421 | None:intergenic | 25.0% |
| ! | TACACGATTGAAATTCAAAT+GGG | - | tig0024668:57510-57529 | None:intergenic | 25.0% |
| ! | ATACACGATTGAAATTCAAA+TGG | - | tig0024668:57511-57530 | None:intergenic | 25.0% |
| !! | GATTGAATATTTGAAGTTGA+GGG | - | tig0024668:57542-57561 | None:intergenic | 25.0% |
| !! | AGATTGAATATTTGAAGTTG+AGG | - | tig0024668:57543-57562 | None:intergenic | 25.0% |
| ! | GTTAATACCAATTTATCTGA+AGG | - | tig0024668:57605-57624 | None:intergenic | 25.0% |
| ! | GAATCATTCACATAAAAGAA+AGG | + | tig0024668:57762-57781 | Msa1419090:CDS | 25.0% |
| ! | AAAATCAATGCATCAAAAAG+AGG | + | tig0024668:57889-57908 | Msa1419090:CDS | 25.0% |
| ! | AGTGATGAATCAATATTAGA+AGG | + | tig0024668:58024-58043 | Msa1419090:CDS | 25.0% |
| ! | GTGATGAATCAATATTAGAA+GGG | + | tig0024668:58025-58044 | Msa1419090:CDS | 25.0% |
| ! | TGAACAATTATGATTATTGC+GGG | - | tig0024668:58103-58122 | None:intergenic | 25.0% |
| ! | CTGAACAATTATGATTATTG+CGG | - | tig0024668:58104-58123 | None:intergenic | 25.0% |
| !!! | AATCTAACTTTGAGATAATG+TGG | - | tig0024668:58196-58215 | None:intergenic | 25.0% |
| !! | TGTATACTCGATTTAACTTA+TGG | - | tig0024668:58346-58365 | None:intergenic | 25.0% |
| !! | TCAGTTTCATACAACATTTT+GGG | - | tig0024668:58578-58597 | None:intergenic | 25.0% |
| !! | TTCAGTTTCATACAACATTT+TGG | - | tig0024668:58579-58598 | None:intergenic | 25.0% |
| !!! | CACTGAATTTATTTTCTTCT+TGG | - | tig0024668:58619-58638 | None:intergenic | 25.0% |
| !! | TTTTTAATCACATCTTCTCT+TGG | - | tig0024668:58686-58705 | None:intergenic | 25.0% |
| !! | GGTTAGAATATTTTCTTAAG+TGG | + | tig0024668:58754-58773 | Msa1419090:intron | 25.0% |
| !! | GAGAATTTTCTCATAATTAG+AGG | + | tig0024668:58838-58857 | Msa1419090:intron | 25.0% |
| ! | GAGAGATTAAGAAAAACTAT+AGG | + | tig0024668:58865-58884 | Msa1419090:intron | 25.0% |
| !!! | TATCAGTGATTACTTTTACT+TGG | + | tig0024668:59042-59061 | Msa1419090:intron | 25.0% |
| !!! | GTAGTGCATATTACTTTTAA+TGG | + | tig0024668:59100-59119 | Msa1419090:intron | 25.0% |
| ! | TGATCTTAAGAAGAATTACT+CGG | - | tig0024668:59182-59201 | None:intergenic | 25.0% |
| ! | CACTTTCAATCAATATTTGA+TGG | - | tig0024668:59261-59280 | None:intergenic | 25.0% |
| !!! | ACTTTAAAGTTCTAACATGT+TGG | + | tig0024668:59868-59887 | Msa1419090:intron | 25.0% |
| ! | ATCATCAGAAAAAGTTACTA+CGG | - | tig0024668:59969-59988 | None:intergenic | 25.0% |
| !!! | GTAACTTTTTCTGATGATAT+TGG | + | tig0024668:59971-59990 | Msa1419090:CDS | 25.0% |
| !! | TTTTAGTACTTGATATGCTT+TGG | + | tig0024668:60105-60124 | Msa1419090:intron | 25.0% |
| ! | TAGTCCTTGTAAATAGTAAT+TGG | + | tig0024668:60311-60330 | Msa1419090:exon | 25.0% |
| !!! | ATGAGTGAGTTTTGTTGTTA+GGG | - | tig0024668:56370-56389 | None:intergenic | 30.0% |
| !!! | TATGAGTGAGTTTTGTTGTT+AGG | - | tig0024668:56371-56390 | None:intergenic | 30.0% |
| ACTTGTTTGTGATACAAAGA+GGG | - | tig0024668:56442-56461 | None:intergenic | 30.0% | |
| AAAATACGAAAAGGAAAACC+TGG | - | tig0024668:56548-56567 | None:intergenic | 30.0% | |
| ! | ACTTCTTTTTCTCTGCATAA+TGG | - | tig0024668:56730-56749 | None:intergenic | 30.0% |
| GCAATATTTCAGCATTACTT+TGG | + | tig0024668:56783-56802 | Msa1419090:CDS | 30.0% | |
| !! | GATACAATTGTTGTTTCTGA+TGG | + | tig0024668:56846-56865 | Msa1419090:CDS | 30.0% |
| AAGCTTAAACTCAAATTTGG+AGG | + | tig0024668:56894-56913 | Msa1419090:CDS | 30.0% | |
| !! | TTCTAAAGCTTCTCATCTAT+CGG | + | tig0024668:57625-57644 | Msa1419090:intron | 30.0% |
| ! | TCTCTTTTTATCATAAGAGC+GGG | - | tig0024668:57686-57705 | None:intergenic | 30.0% |
| ! | CTCTCTTTTTATCATAAGAG+CGG | - | tig0024668:57687-57706 | None:intergenic | 30.0% |
| TTGATTCATCACTTGATGTA+GGG | - | tig0024668:58017-58036 | None:intergenic | 30.0% | |
| ! | ATTGATTCATCACTTGATGT+AGG | - | tig0024668:58018-58037 | None:intergenic | 30.0% |
| ! | ACTCGATTTAACTTATGGTA+GGG | - | tig0024668:58341-58360 | None:intergenic | 30.0% |
| ! | TACTCGATTTAACTTATGGT+AGG | - | tig0024668:58342-58361 | None:intergenic | 30.0% |
| ! | ATTGGTGTAGCTTTTATAGT+AGG | + | tig0024668:58725-58744 | Msa1419090:intron | 30.0% |
| ! | TTGGTGTAGCTTTTATAGTA+GGG | + | tig0024668:58726-58745 | Msa1419090:intron | 30.0% |
| TACCTCTAAATCTCTTCTAA+TGG | - | tig0024668:58897-58916 | None:intergenic | 30.0% | |
| AGAAGAGATTTAGAGGTAAA+TGG | + | tig0024668:58899-58918 | Msa1419090:intron | 30.0% | |
| TTGTGTACAACTAATGTAAG+TGG | + | tig0024668:59234-59253 | Msa1419090:intron | 30.0% | |
| TGTGTACAACTAATGTAAGT+GGG | + | tig0024668:59235-59254 | Msa1419090:intron | 30.0% | |
| ! | TCTAAAACTAAGATGATCAG+AGG | - | tig0024668:59620-59639 | None:intergenic | 30.0% |
| TTGACCAAGTATCTTCTTAA+TGG | - | tig0024668:59744-59763 | None:intergenic | 30.0% | |
| AGGAAAAGATGAATAAGCAA+AGG | + | tig0024668:59786-59805 | Msa1419090:CDS | 30.0% | |
| GGAAAAGATGAATAAGCAAA+GGG | + | tig0024668:59787-59806 | Msa1419090:CDS | 30.0% | |
| AAACAATATAGGAAGAAGGT+TGG | - | tig0024668:59846-59865 | None:intergenic | 30.0% | |
| GTTGAAACAATATAGGAAGA+AGG | - | tig0024668:59850-59869 | None:intergenic | 30.0% | |
| ! | TATATTTTGCAAGACTTGGA+AGG | + | tig0024668:60338-60357 | Msa1419090:three_prime_UTR | 30.0% |
| TTGAGACAAATAGGTCTATT+TGG | - | tig0024668:60401-60420 | None:intergenic | 30.0% | |
| GACAAAGAATTGAGACAAAT+AGG | - | tig0024668:60410-60429 | None:intergenic | 30.0% | |
| ! | GACTTGTTTGTGATACAAAG+AGG | - | tig0024668:56443-56462 | None:intergenic | 35.0% |
| !!! | CCGGTTAAGTTTTGATTTTC+CGG | - | tig0024668:56482-56501 | None:intergenic | 35.0% |
| CCGGAAAATCAAAACTTAAC+CGG | + | tig0024668:56479-56498 | Msa1419090:five_prime_UTR | 35.0% | |
| ATTGCATCACAATTAACCCT+AGG | - | tig0024668:56768-56787 | None:intergenic | 35.0% | |
| ATTATTACCTTAGCATTGCG+AGG | - | tig0024668:56957-56976 | None:intergenic | 35.0% | |
| AATGCAAAGTGGTCTATGTT+CGG | - | tig0024668:57219-57238 | None:intergenic | 35.0% | |
| ! | AAAGTGAGTTGAATGCAAAG+TGG | - | tig0024668:57230-57249 | None:intergenic | 35.0% |
| AATTCATCCAAGTGCATGTT+TGG | - | tig0024668:57298-57317 | None:intergenic | 35.0% | |
| GTATTTGCAAGAGCTTCTAT+TGG | + | tig0024668:57373-57392 | Msa1419090:intron | 35.0% | |
| TGGTATGTACATGATTTCGT+GGG | - | tig0024668:57471-57490 | None:intergenic | 35.0% | |
| ATGGTATGTACATGATTTCG+TGG | - | tig0024668:57472-57491 | None:intergenic | 35.0% | |
| TGGGTCCCACTAAATTTATA+TGG | - | tig0024668:57491-57510 | None:intergenic | 35.0% | |
| CGCTCTTATGATAAAAAGAG+AGG | + | tig0024668:57685-57704 | Msa1419090:CDS | 35.0% | |
| TATGATAAAAAGAGAGGCCA+TGG | + | tig0024668:57691-57710 | Msa1419090:CDS | 35.0% | |
| ATGATAAAAAGAGAGGCCAT+GGG | + | tig0024668:57692-57711 | Msa1419090:CDS | 35.0% | |
| ACAATTATGATTATTGCGGG+TGG | - | tig0024668:58100-58119 | None:intergenic | 35.0% | |
| ATGTCAATAATGCTTGCAAC+TGG | - | tig0024668:58156-58175 | None:intergenic | 35.0% | |
| ! | CTCGATTTAACTTATGGTAG+GGG | - | tig0024668:58340-58359 | None:intergenic | 35.0% |
| ACAAAGTGCAAGTTTAGCAA+AGG | + | tig0024668:58363-58382 | Msa1419090:intron | 35.0% | |
| GGAGATATTAACCTTTGAGT+GGG | + | tig0024668:58456-58475 | Msa1419090:intron | 35.0% | |
| ATATTAACCTTTGAGTGGGA+TGG | + | tig0024668:58460-58479 | Msa1419090:intron | 35.0% | |
| ! | AGCTTTTATAGTAGGGAACA+TGG | + | tig0024668:58733-58752 | Msa1419090:intron | 35.0% |
| AGCCATTAGAAGAGATTTAG+AGG | + | tig0024668:58892-58911 | Msa1419090:intron | 35.0% | |
| !! | ATATAGGTAGGTTGGTTACA+TGG | - | tig0024668:58983-59002 | None:intergenic | 35.0% |
| ATGTAACCAACCTACCTATA+TGG | + | tig0024668:58982-59001 | Msa1419090:intron | 35.0% | |
| ACAACAAGCCATTAACCTAT+AGG | - | tig0024668:59014-59033 | None:intergenic | 35.0% | |
| TCATACTGAGTTACGAAACA+AGG | - | tig0024668:59374-59393 | None:intergenic | 35.0% | |
| TTGTTTCGTAACTCAGTATG+AGG | + | tig0024668:59373-59392 | Msa1419090:intron | 35.0% | |
| GACATTGTATGCATATCTCT+AGG | + | tig0024668:59444-59463 | Msa1419090:intron | 35.0% | |
| TAAAAAGAGCAAGTTGTCAG+AGG | + | tig0024668:59506-59525 | Msa1419090:CDS | 35.0% | |
| ACGAAAAATTCAAGCTGAGA+AGG | + | tig0024668:59563-59582 | Msa1419090:CDS | 35.0% | |
| CTCTCACATTGTGTTTATGT+AGG | + | tig0024668:59712-59731 | Msa1419090:intron | 35.0% | |
| GTGTTTGATGCTAGATTGAA+GGG | - | tig0024668:59917-59936 | None:intergenic | 35.0% | |
| AGTGTTTGATGCTAGATTGA+AGG | - | tig0024668:59918-59937 | None:intergenic | 35.0% | |
| AAAGTTACTACGGTTCCATT+GGG | - | tig0024668:59959-59978 | None:intergenic | 35.0% | |
| AAAAGTTACTACGGTTCCAT+TGG | - | tig0024668:59960-59979 | None:intergenic | 35.0% | |
| GACATTGTTTGGAAGATACT+TGG | - | tig0024668:60001-60020 | None:intergenic | 35.0% | |
| TCTTCCAAACAATGTCTAAC+AGG | + | tig0024668:60005-60024 | Msa1419090:CDS | 35.0% | |
| TGTACCTGTTAGACATTGTT+TGG | - | tig0024668:60012-60031 | None:intergenic | 35.0% | |
| TTGTAAGCATTAGTGCAGTT+TGG | - | tig0024668:60203-60222 | None:intergenic | 35.0% | |
| GCACTAATGCTTACAAGTAT+CGG | + | tig0024668:60207-60226 | Msa1419090:CDS | 35.0% | |
| CACTAATGCTTACAAGTATC+GGG | + | tig0024668:60208-60227 | Msa1419090:CDS | 35.0% | |
| ! | AATTTTTCCACATATCCTCC+TGG | - | tig0024668:60376-60395 | None:intergenic | 35.0% |
| ! | TTGATTTTCCGGAGTTCAGT+GGG | - | tig0024668:56471-56490 | None:intergenic | 40.0% |
| !! | TTTGATTTTCCGGAGTTCAG+TGG | - | tig0024668:56472-56491 | None:intergenic | 40.0% |
| ! | CAATTAACCCTAGGTTTTCG+TGG | - | tig0024668:56759-56778 | None:intergenic | 40.0% |
| ! | TATCGGTTATCAATGCATGC+AGG | + | tig0024668:57642-57661 | Msa1419090:intron | 40.0% |
| TGATAAAAAGAGAGGCCATG+GGG | + | tig0024668:57693-57712 | Msa1419090:CDS | 40.0% | |
| GGTGTTTGTAAAGATGCATC+AGG | + | tig0024668:57955-57974 | Msa1419090:CDS | 40.0% | |
| TGCATCAGGAAAGAACTATG+AGG | + | tig0024668:57969-57988 | Msa1419090:CDS | 40.0% | |
| CAGGAAAGAACTATGAGGAT+CGG | + | tig0024668:57974-57993 | Msa1419090:CDS | 40.0% | |
| AGGAAAGAACTATGAGGATC+GGG | + | tig0024668:57975-57994 | Msa1419090:CDS | 40.0% | |
| AAACCAACAGATTCCCTCTT+TGG | - | tig0024668:58057-58076 | None:intergenic | 40.0% | |
| TCTTTCAAAGATGCGCTATC+TGG | + | tig0024668:58129-58148 | Msa1419090:CDS | 40.0% | |
| CTTTCAAAGATGCGCTATCT+GGG | + | tig0024668:58130-58149 | Msa1419090:CDS | 40.0% | |
| GCAAGCATTATTGACATCTC+AGG | + | tig0024668:58159-58178 | Msa1419090:CDS | 40.0% | |
| AGCATTATTGACATCTCAGG+TGG | + | tig0024668:58162-58181 | Msa1419090:intron | 40.0% | |
| TATTGACATCTCAGGTGGTT+TGG | + | tig0024668:58167-58186 | Msa1419090:intron | 40.0% | |
| ! | GATTTAACTTATGGTAGGGG+CGG | - | tig0024668:58337-58356 | None:intergenic | 40.0% |
| AGTCACTTCGTATGGAATCA+AGG | - | tig0024668:58425-58444 | None:intergenic | 40.0% | |
| TGATTCCATACGAAGTGACT+AGG | + | tig0024668:58425-58444 | Msa1419090:intron | 40.0% | |
| TATCTCCTAGTCACTTCGTA+TGG | - | tig0024668:58433-58452 | None:intergenic | 40.0% | |
| GGGAGATATTAACCTTTGAG+TGG | + | tig0024668:58455-58474 | Msa1419090:intron | 40.0% | |
| ATTTCATCCATCCCACTCAA+AGG | - | tig0024668:58470-58489 | None:intergenic | 40.0% | |
| TTGAGTGGGATGGATGAAAT+AGG | + | tig0024668:58470-58489 | Msa1419090:intron | 40.0% | |
| CAGTGTCACAAAGATCTCAA+TGG | + | tig0024668:58634-58653 | Msa1419090:intron | 40.0% | |
| CAAAGATCTCAATGGTGCAA+TGG | + | tig0024668:58642-58661 | Msa1419090:intron | 40.0% | |
| ! | AGTGGATTTAGCAAGTTACG+AGG | + | tig0024668:58772-58791 | Msa1419090:intron | 40.0% |
| CTGATGAGGAAAATACTAGC+TGG | + | tig0024668:58816-58835 | Msa1419090:intron | 40.0% | |
| AGAGGTAAATGGTCTCATGT+TGG | + | tig0024668:58910-58929 | Msa1419090:intron | 40.0% | |
| TGAGATCCATATAGGTAGGT+TGG | - | tig0024668:58991-59010 | None:intergenic | 40.0% | |
| TAGGTGAGATCCATATAGGT+AGG | - | tig0024668:58995-59014 | None:intergenic | 40.0% | |
| CCTATAGGTGAGATCCATAT+AGG | - | tig0024668:58999-59018 | None:intergenic | 40.0% | |
| CCTATATGGATCTCACCTAT+AGG | + | tig0024668:58996-59015 | Msa1419090:intron | 40.0% | |
| GGATCTCACCTATAGGTTAA+TGG | + | tig0024668:59003-59022 | Msa1419090:intron | 40.0% | |
| ACTGAGTTACGAAACAAGGT+GGG | - | tig0024668:59370-59389 | None:intergenic | 40.0% | |
| TACTGAGTTACGAAACAAGG+TGG | - | tig0024668:59371-59390 | None:intergenic | 40.0% | |
| ACAGCTAATCAAGAAAGCTG+AGG | + | tig0024668:59530-59549 | Msa1419090:CDS | 40.0% | |
| GCAGCCATTAAGAAGATACT+TGG | + | tig0024668:59737-59756 | Msa1419090:CDS | 40.0% | |
| CGTAAACTGTATCAAGACCT+TGG | - | tig0024668:59822-59841 | None:intergenic | 40.0% | |
| ! | TTCTAACATGTTGGTTGTGC+AGG | + | tig0024668:59877-59896 | Msa1419090:intron | 40.0% |
| TAGCATCAAACACTGTTCGA+TGG | + | tig0024668:59924-59943 | Msa1419090:CDS | 40.0% | |
| !! | AAACACTGTTCGATGGACTA+TGG | + | tig0024668:59931-59950 | Msa1419090:CDS | 40.0% |
| !! | AACACTGTTCGATGGACTAT+GGG | + | tig0024668:59932-59951 | Msa1419090:CDS | 40.0% |
| TAACAACCAAGACTGCAAAG+GGG | - | tig0024668:60251-60270 | None:intergenic | 40.0% | |
| GTAACAACCAAGACTGCAAA+GGG | - | tig0024668:60252-60271 | None:intergenic | 40.0% | |
| TGTAACAACCAAGACTGCAA+AGG | - | tig0024668:60253-60272 | None:intergenic | 40.0% | |
| AAGGACTAACATGCAATCAC+AGG | - | tig0024668:60299-60318 | None:intergenic | 40.0% | |
| GACTTGGAAGGTTTGTGATT+TGG | + | tig0024668:60350-60369 | Msa1419090:three_prime_UTR | 40.0% | |
| ! | TTCCTTGCTACGGTGTTTTC+CGG | - | tig0024668:56501-56520 | None:intergenic | 45.0% |
| AAAGGAAAACCTGGACATCG+TGG | - | tig0024668:56539-56558 | None:intergenic | 45.0% | |
| TGATGTGCCACGAAAACCTA+GGG | + | tig0024668:56749-56768 | Msa1419090:CDS | 45.0% | |
| TACCTTAGCATTGCGAGGAT+CGG | - | tig0024668:56952-56971 | None:intergenic | 45.0% | |
| ! | TGTATGTTTGGTTCCACGTC+TGG | + | tig0024668:57042-57061 | Msa1419090:intron | 45.0% |
| ! | CAAGTGCATGTTTGGTTCAG+TGG | - | tig0024668:57290-57309 | None:intergenic | 45.0% |
| CACTGAACCAAACATGCACT+TGG | + | tig0024668:57288-57307 | Msa1419090:intron | 45.0% | |
| GCTTAACCAATTTGTCCCCA+TGG | - | tig0024668:57711-57730 | None:intergenic | 45.0% | |
| AGTAACTCGCTTGCTCTTAC+GGG | - | tig0024668:57803-57822 | None:intergenic | 45.0% | |
| CAGTAACTCGCTTGCTCTTA+CGG | - | tig0024668:57804-57823 | None:intergenic | 45.0% | |
| AGTTACTGAGAGATGTGCCA+TGG | + | tig0024668:57816-57835 | Msa1419090:CDS | 45.0% | |
| AAGAGGAGTTAGTCGCCATA+AGG | + | tig0024668:57906-57925 | Msa1419090:CDS | 45.0% | |
| AGTCGCCATAAGGACAATCA+AGG | + | tig0024668:57916-57935 | Msa1419090:CDS | 45.0% | |
| TGCCTCCTTGATTGTCCTTA+TGG | - | tig0024668:57924-57943 | None:intergenic | 45.0% | |
| TAGAAGGGAAGAAGCCAAAG+AGG | + | tig0024668:58040-58059 | Msa1419090:CDS | 45.0% | |
| AGAAGGGAAGAAGCCAAAGA+GGG | + | tig0024668:58041-58060 | Msa1419090:CDS | 45.0% | |
| AAGCCAAAGAGGGAATCTGT+TGG | + | tig0024668:58051-58070 | Msa1419090:CDS | 45.0% | |
| ACGAAGTGACTAGGAGATAG+AGG | + | tig0024668:58434-58453 | Msa1419090:intron | 45.0% | |
| CGAAGTGACTAGGAGATAGA+GGG | + | tig0024668:58435-58454 | Msa1419090:intron | 45.0% | |
| !! | TCAATGGTGCAATGGACTAG+TGG | + | tig0024668:58650-58669 | Msa1419090:intron | 45.0% |
| !! | CAGCGTTGAGCTGTTTCTAT+AGG | - | tig0024668:58799-58818 | None:intergenic | 45.0% |
| GGTCTCATGTTGGACCTAAT+AGG | + | tig0024668:58920-58939 | Msa1419090:intron | 45.0% | |
| CTAATAGGCTCGTGCATGTT+GGG | + | tig0024668:58935-58954 | Msa1419090:intron | 45.0% | |
| CTGAGTTACGAAACAAGGTG+GGG | - | tig0024668:59369-59388 | None:intergenic | 45.0% | |
| TACTTGGTCAAGATCCTGCT+AGG | + | tig0024668:59753-59772 | Msa1419090:CDS | 45.0% | |
| TCCTGCTAGGAAGAAGAAAG+AGG | + | tig0024668:59766-59785 | Msa1419090:CDS | 45.0% | |
| TCCTCTTTCTTCTTCCTAGC+AGG | - | tig0024668:59770-59789 | None:intergenic | 45.0% | |
| GCAAAGGGATGAAATAGCCA+AGG | + | tig0024668:59802-59821 | Msa1419090:CDS | 45.0% | |
| !!! | TACAAATTTTAAATTAATAA+TGG | + | tig0024668:59127-59146 | Msa1419090:intron | 5.0% |
| AACCGGAAAACACCGTAGCA+AGG | + | tig0024668:56496-56515 | Msa1419090:five_prime_UTR | 50.0% | |
| !! | TGTGGTGGGTTTCCTTGCTA+CGG | - | tig0024668:56511-56530 | None:intergenic | 50.0% |
| ACATCGTGGCTGTTTGTGGT+GGG | - | tig0024668:56525-56544 | None:intergenic | 50.0% | |
| GTGATGTGCCACGAAAACCT+AGG | + | tig0024668:56748-56767 | Msa1419090:CDS | 50.0% | |
| TTCCGATCCTCGCAATGCTA+AGG | + | tig0024668:56947-56966 | Msa1419090:CDS | 50.0% | |
| ! | ATGTTTGGTTCCACGTCTGG+TGG | + | tig0024668:57045-57064 | Msa1419090:intron | 50.0% |
| TCTATTGTCTCCACCAGACG+TGG | - | tig0024668:57058-57077 | None:intergenic | 50.0% | |
| TGAGAGATGTGCCATGGATG+TGG | + | tig0024668:57822-57841 | Msa1419090:CDS | 50.0% | |
| GAGAGATGTGCCATGGATGT+GGG | + | tig0024668:57823-57842 | Msa1419090:CDS | 50.0% | |
| AGAGATGTGCCATGGATGTG+GGG | + | tig0024668:57824-57843 | Msa1419090:CDS | 50.0% | |
| CGCCATAAGGACAATCAAGG+AGG | + | tig0024668:57919-57938 | Msa1419090:CDS | 50.0% | |
| TTGCGGGTGGAATGCTTTCT+TGG | - | tig0024668:58087-58106 | None:intergenic | 50.0% | |
| GAAACAGCTCAACGCTGATG+AGG | + | tig0024668:58802-58821 | Msa1419090:intron | 50.0% | |
| CCAACATGCACGAGCCTATT+AGG | - | tig0024668:58937-58956 | None:intergenic | 50.0% | |
| CCTAATAGGCTCGTGCATGT+TGG | + | tig0024668:58934-58953 | Msa1419090:intron | 50.0% | |
| AGTTACGAAACAAGGTGGGG+AGG | - | tig0024668:59366-59385 | None:intergenic | 50.0% | |
| TTCAAGCTGAGAAGGCAGCT+AGG | + | tig0024668:59571-59590 | Msa1419090:CDS | 50.0% | |
| TCAAGCTGAGAAGGCAGCTA+GGG | + | tig0024668:59572-59591 | Msa1419090:CDS | 50.0% | |
| GAGGAGTCACGTTCAAACCT+CGG | - | tig0024668:59601-59620 | None:intergenic | 50.0% | |
| ! | ACCTGCGCACTTTTCTCTTG+GGG | - | tig0024668:60180-60199 | None:intergenic | 50.0% |
| ! | GACCTGCGCACTTTTCTCTT+GGG | - | tig0024668:60181-60200 | None:intergenic | 50.0% |
| ! | GCAAAGGGGAAGCTTTGACT+TGG | - | tig0024668:60237-60256 | None:intergenic | 50.0% |
| AAGCTTCCCCTTTGCAGTCT+TGG | + | tig0024668:60242-60261 | Msa1419090:CDS | 50.0% | |
| ! | GGAAGGTTTGTGATTTGGCC+AGG | + | tig0024668:60355-60374 | Msa1419090:three_prime_UTR | 50.0% |
| ! | AGGTTTGTGATTTGGCCAGG+AGG | + | tig0024668:60358-60377 | Msa1419090:three_prime_UTR | 50.0% |
| GATTTGGCCAGGAGGATATG+TGG | + | tig0024668:60366-60385 | Msa1419090:three_prime_UTR | 50.0% | |
| GACATCGTGGCTGTTTGTGG+TGG | - | tig0024668:56526-56545 | None:intergenic | 55.0% | |
| CTGGACATCGTGGCTGTTTG+TGG | - | tig0024668:56529-56548 | None:intergenic | 55.0% | |
| CACAAACAGCCACGATGTCC+AGG | + | tig0024668:56527-56546 | Msa1419090:exon | 55.0% | |
| GCATTGCGAGGATCGGAAGA+AGG | - | tig0024668:56945-56964 | None:intergenic | 55.0% | |
| GAGAGGCCATGGGGACAAAT+TGG | + | tig0024668:57702-57721 | Msa1419090:CDS | 55.0% | |
| ATCGCTACACCCCACATCCA+TGG | - | tig0024668:57836-57855 | None:intergenic | 55.0% | |
| ! | CAAGGAGGCACAACAATGCG+TGG | + | tig0024668:57934-57953 | Msa1419090:CDS | 55.0% |
| ! | ATGTAATGCGAAGCACCCCC+CGG | + | tig0024668:59338-59357 | Msa1419090:intron | 55.0% |
| !! | CGATGGACTATGGGTCCCAA+TGG | + | tig0024668:59941-59960 | Msa1419090:CDS | 55.0% |
| ! | CCTGCGCACTTTTCTCTTGG+GGG | - | tig0024668:60179-60198 | None:intergenic | 55.0% |
| ! | GGACCTGCGCACTTTTCTCT+TGG | - | tig0024668:60182-60201 | None:intergenic | 55.0% |
| GTCGCAGTCCCACTGAACTC+CGG | + | tig0024668:56460-56479 | Msa1419090:five_prime_UTR | 60.0% | |
| GCGAGGATCGGAAGAAGGCT+TGG | - | tig0024668:56940-56959 | None:intergenic | 60.0% | |
| ! | TGTAATGCGAAGCACCCCCC+GGG | + | tig0024668:59339-59358 | Msa1419090:intron | 60.0% |
| AAACAAGGTGGGGAGGACCC+GGG | - | tig0024668:59359-59378 | None:intergenic | 60.0% | |
| GAAACAAGGTGGGGAGGACC+CGG | - | tig0024668:59360-59379 | None:intergenic | 60.0% | |
| AGCTGAGAAGGCAGCTAGGG+AGG | + | tig0024668:59575-59594 | Msa1419090:CDS | 60.0% | |
| ! | GCGCACTTTTCTCTTGGGGG+AGG | - | tig0024668:60176-60195 | None:intergenic | 60.0% |
| ! | CCCCCAAGAGAAAAGTGCGC+AGG | + | tig0024668:60176-60195 | Msa1419090:CDS | 60.0% |
| AACAAGGTGGGGAGGACCCG+GGG | - | tig0024668:59358-59377 | None:intergenic | 65.0% | |
| ACAAGGTGGGGAGGACCCGG+GGG | - | tig0024668:59357-59376 | None:intergenic | 70.0% | |
| GAAGGCAGCTAGGGAGGCCG+AGG | + | tig0024668:59581-59600 | Msa1419090:CDS | 70.0% | |
| CAAGGTGGGGAGGACCCGGG+GGG | - | tig0024668:59356-59375 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024668 | gene | 56346 | 60484 | 56346 | ID=Msa1419090;Name=Msa1419090 |
| tig0024668 | mRNA | 56346 | 60484 | 56346 | ID=Msa1419090-mRNA-1;Parent=Msa1419090;Name=Msa1419090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=195|1|1|1|1|1|7|171|413 |
| tig0024668 | exon | 56346 | 56548 | 56346 | ID=Msa1419090-mRNA-1:exon:709;Parent=Msa1419090-mRNA-1 |
| tig0024668 | exon | 56713 | 56968 | 56713 | ID=Msa1419090-mRNA-1:exon:710;Parent=Msa1419090-mRNA-1 |
| tig0024668 | exon | 57664 | 58180 | 57664 | ID=Msa1419090-mRNA-1:exon:711;Parent=Msa1419090-mRNA-1 |
| tig0024668 | exon | 59505 | 59602 | 59505 | ID=Msa1419090-mRNA-1:exon:712;Parent=Msa1419090-mRNA-1 |
| tig0024668 | exon | 59734 | 59823 | 59734 | ID=Msa1419090-mRNA-1:exon:713;Parent=Msa1419090-mRNA-1 |
| tig0024668 | exon | 59899 | 60026 | 59899 | ID=Msa1419090-mRNA-1:exon:714;Parent=Msa1419090-mRNA-1 |
| tig0024668 | exon | 60169 | 60484 | 60169 | ID=Msa1419090-mRNA-1:exon:715;Parent=Msa1419090-mRNA-1 |
| tig0024668 | five_prime_UTR | 56346 | 56540 | 56346 | ID=Msa1419090-mRNA-1:five_prime_utr;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 56541 | 56548 | 56541 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 56713 | 56968 | 56713 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 57664 | 58180 | 57664 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 59505 | 59602 | 59505 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 59734 | 59823 | 59734 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 59899 | 60026 | 59899 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | CDS | 60169 | 60313 | 60169 | ID=Msa1419090-mRNA-1:cds;Parent=Msa1419090-mRNA-1 |
| tig0024668 | three_prime_UTR | 60314 | 60484 | 60314 | ID=Msa1419090-mRNA-1:three_prime_utr;Parent=Msa1419090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
