Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439290 | XP_013458343.1 | 97.561 | 574 | 14 | 0 | 1 | 574 | 69 | 642 | 0.0 | 1167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439290 | sp|Q9ASW1|B3GTG_ARATH | 58.087 | 575 | 222 | 5 | 4 | 574 | 60 | 619 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439290 | A0A072URG8 | 97.561 | 574 | 14 | 0 | 1 | 574 | 69 | 642 | 0.0 | 1167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1439290 | Msa1451470 | 0.981569 | 6.556211e-153 | -8.615850e-47 |
| Msa1204290 | Msa1439290 | 0.893285 | 7.247339e-75 | -8.615850e-47 |
| Msa1204310 | Msa1439290 | 0.913526 | 5.558232e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439290 | MtrunA17_Chr4g0068981 | 97.561 | 574 | 14 | 0 | 1 | 574 | 69 | 642 | 0.0 | 1167 |
| Msa1439290 | MtrunA17_Chr5g0417441 | 53.737 | 562 | 253 | 5 | 17 | 573 | 75 | 634 | 0.0 | 615 |
| Msa1439290 | MtrunA17_Chr2g0285521 | 36.460 | 565 | 316 | 12 | 42 | 573 | 132 | 686 | 2.28e-112 | 350 |
| Msa1439290 | MtrunA17_Chr4g0059801 | 37.477 | 539 | 304 | 15 | 52 | 573 | 90 | 612 | 8.43e-111 | 344 |
| Msa1439290 | MtrunA17_Chr5g0415331 | 35.727 | 557 | 320 | 14 | 48 | 573 | 91 | 640 | 5.30e-107 | 335 |
| Msa1439290 | MtrunA17_Chr8g0363761 | 34.532 | 556 | 322 | 15 | 48 | 573 | 106 | 649 | 1.65e-102 | 323 |
| Msa1439290 | MtrunA17_Chr8g0360581 | 25.954 | 262 | 173 | 9 | 323 | 573 | 80 | 331 | 3.95e-12 | 67.8 |
| Msa1439290 | MtrunA17_Chr2g0316241 | 25.670 | 261 | 175 | 9 | 323 | 573 | 74 | 325 | 3.50e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439290 | AT3G06440.1 | 58.087 | 575 | 222 | 5 | 4 | 574 | 60 | 619 | 0.0 | 684 |
| Msa1439290 | AT3G06440.2 | 55.052 | 574 | 212 | 6 | 4 | 574 | 60 | 590 | 0.0 | 630 |
| Msa1439290 | AT1G26810.2 | 51.418 | 564 | 259 | 5 | 20 | 573 | 82 | 640 | 0.0 | 573 |
| Msa1439290 | AT1G26810.1 | 51.418 | 564 | 259 | 5 | 20 | 573 | 82 | 640 | 0.0 | 573 |
| Msa1439290 | AT5G62620.1 | 38.372 | 516 | 280 | 10 | 89 | 573 | 170 | 678 | 1.19e-113 | 353 |
| Msa1439290 | AT1G74800.1 | 37.205 | 551 | 315 | 13 | 45 | 573 | 128 | 669 | 7.82e-111 | 346 |
| Msa1439290 | AT1G27120.2 | 36.502 | 526 | 301 | 11 | 71 | 573 | 124 | 639 | 4.04e-108 | 338 |
| Msa1439290 | AT1G27120.1 | 36.742 | 528 | 297 | 11 | 71 | 573 | 155 | 670 | 8.54e-108 | 338 |
| Msa1439290 | AT4G21060.2 | 35.110 | 544 | 315 | 13 | 60 | 573 | 146 | 681 | 7.88e-103 | 325 |
| Msa1439290 | AT4G21060.1 | 35.110 | 544 | 315 | 13 | 60 | 573 | 203 | 738 | 4.81e-102 | 325 |
| Msa1439290 | AT5G62620.2 | 36.080 | 449 | 249 | 10 | 89 | 506 | 170 | 611 | 7.48e-82 | 268 |
| Msa1439290 | AT2G26100.1 | 26.641 | 259 | 175 | 6 | 323 | 573 | 107 | 358 | 1.42e-16 | 82.0 |
| Msa1439290 | AT3G14960.1 | 27.969 | 261 | 173 | 7 | 321 | 573 | 79 | 332 | 3.42e-16 | 80.5 |
| Msa1439290 | AT1G53290.1 | 26.899 | 316 | 195 | 11 | 284 | 573 | 29 | 334 | 1.46e-15 | 79.0 |
| Msa1439290 | AT2G26100.2 | 26.106 | 226 | 155 | 3 | 323 | 542 | 107 | 326 | 1.90e-15 | 78.6 |
Find 136 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAATTGCAATTTGCATTT+TGG | 0.096764 | tig0028741:+21234 | Msa1439290:CDS |
| AATACATGGACTAGTGATTT+TGG | 0.137369 | tig0028741:+19846 | Msa1439290:CDS |
| TTTCTACTGTACAGTCTTAA+AGG | 0.188302 | tig0028741:+19181 | Msa1439290:five_prime_UTR |
| GAAACGGTTATATTTATTTC+AGG | 0.207606 | tig0028741:+19096 | Msa1439290:intron |
| AATCAACAAAAGGCATTAAT+TGG | 0.212309 | tig0028741:-21189 | None:intergenic |
| TTTAACTCCTTGAGCTATTT+CGG | 0.214747 | tig0028741:-19484 | None:intergenic |
| TTTACTCAAACATTTGAATT+AGG | 0.219468 | tig0028741:+18276 | Msa1439290:five_prime_UTR |
| TGCAAGATAATTGGAGGATT+TGG | 0.247383 | tig0028741:-19768 | None:intergenic |
| AAAGGATTAGCCTCAGAAAA+AGG | 0.248836 | tig0028741:-20406 | None:intergenic |
| GCATATGGATTGAACAATTT+AGG | 0.250872 | tig0028741:+22526 | Msa1439290:CDS |
| TTAACTCCTTGAGCTATTTC+GGG | 0.251324 | tig0028741:-19483 | None:intergenic |
| TTTAAGTCTGTTATCAGTTC+TGG | 0.251836 | tig0028741:+20637 | Msa1439290:CDS |
| ATAGAGTTAATCTTGAATTA+TGG | 0.276791 | tig0028741:+21140 | Msa1439290:CDS |
| ATAGCAAAATTCGTTGTCTT+TGG | 0.279953 | tig0028741:+21768 | Msa1439290:CDS |
| GATATCTACTCACAACATTC+TGG | 0.289356 | tig0028741:-22687 | None:intergenic |
| CATTATAATGTGAGTCTTCC+TGG | 0.290225 | tig0028741:+19789 | Msa1439290:CDS |
| ACATTATAATGCAAGATAAT+TGG | 0.291182 | tig0028741:-19777 | None:intergenic |
| GGATTTCATATGACTGTAAA+TGG | 0.300607 | tig0028741:+20457 | Msa1439290:CDS |
| CTTCAGATGGCTTCCCTTTG+AGG | 0.308752 | tig0028741:-21492 | None:intergenic |
| TACCTAAAGCCATGATAAAA+AGG | 0.316882 | tig0028741:-19150 | None:intergenic |
| TAGGGATAGCTGGAGCCTTC+AGG | 0.328328 | tig0028741:-20712 | None:intergenic |
| CAATGAATGTTGTACTTGTT+TGG | 0.333423 | tig0028741:+19421 | Msa1439290:CDS |
| TGTCATTGTCTTGCCAAGTT+TGG | 0.340771 | tig0028741:-19616 | None:intergenic |
| CAAGGATGGTGTTATGCCTT+TGG | 0.341498 | tig0028741:+22640 | Msa1439290:CDS |
| TCGGCGCTCAAAGTTATTTC+CGG | 0.341737 | tig0028741:-20771 | None:intergenic |
| CTCCAGCTATCCCTAGAAAA+AGG | 0.342285 | tig0028741:+20720 | Msa1439290:CDS |
| CTTCTAAGTCATCTCCTGAT+AGG | 0.344437 | tig0028741:+21536 | Msa1439290:CDS |
| TAATAACTCTGTTGATTATG+AGG | 0.354468 | tig0028741:+22729 | Msa1439290:three_prime_UTR |
| TCACTGCCACATTGTGGGTT+GGG | 0.361190 | tig0028741:+20428 | Msa1439290:CDS |
| ATATCATTATCTTCCGTAAC+AGG | 0.362656 | tig0028741:-20671 | None:intergenic |
| TTGCTGTCCTTATCCCTATC+AGG | 0.368376 | tig0028741:-21550 | None:intergenic |
| ACTGGATCTCCCTTGTGGTT+TGG | 0.371403 | tig0028741:+19653 | Msa1439290:CDS |
| TTTCGATGCAGATCAGAAAA+TGG | 0.377851 | tig0028741:+19314 | Msa1439290:exon |
| CCAAGTTTGGTCACAGAGAA+TGG | 0.379786 | tig0028741:-19603 | None:intergenic |
| CCATTCTCTGTGACCAAACT+TGG | 0.381533 | tig0028741:+19603 | Msa1439290:CDS |
| TCCTTTCACTGCCACATTGT+GGG | 0.385409 | tig0028741:+20423 | Msa1439290:CDS |
| GGCTAAAGGTTTACCTGTTA+CGG | 0.394794 | tig0028741:+20658 | Msa1439290:CDS |
| TTCACTGCCACATTGTGGGT+TGG | 0.395199 | tig0028741:+20427 | Msa1439290:CDS |
| AAGGATGGTGTTATGCCTTT+GGG | 0.400443 | tig0028741:+22641 | Msa1439290:CDS |
| CTGTTATCAGTTCTGGCTAA+AGG | 0.403419 | tig0028741:+20644 | Msa1439290:CDS |
| CTTTCTGAGGAAATATTAGA+AGG | 0.408472 | tig0028741:-20361 | None:intergenic |
| CCAGCTCCAGCTCCAGCTCC+AGG | 0.411454 | tig0028741:-18182 | None:intergenic |
| ACACTGATCGGCATCCCTAA+TGG | 0.427912 | tig0028741:+19693 | Msa1439290:CDS |
| TTCACACCTGGAGCTGGAGC+TGG | 0.428081 | tig0028741:+18176 | Msa1439290:five_prime_UTR |
| AAGATGTTGCCATGGGCATA+TGG | 0.431266 | tig0028741:+22511 | Msa1439290:CDS |
| TAGAATCATTTGGTGGTGAA+TGG | 0.435315 | tig0028741:-19258 | None:intergenic |
| CCACCATGGGCACATGGTCC+TGG | 0.440633 | tig0028741:+21726 | Msa1439290:CDS |
| AGATGGCTTCCCTTTGAGGC+TGG | 0.441178 | tig0028741:-21488 | None:intergenic |
| CAAAGGCATAACACCATCCT+TGG | 0.450169 | tig0028741:-22639 | None:intergenic |
| TTAAAGAGGCTTCTGTAGCT+TGG | 0.451470 | tig0028741:+19502 | Msa1439290:CDS |
| GAATGGCTCTGAGGAGGTCC+TGG | 0.454334 | tig0028741:+20792 | Msa1439290:CDS |
| TGGACGGAAGCTCAAGCATA+TGG | 0.456280 | tig0028741:+21160 | Msa1439290:CDS |
| TTGAAAATGAAGAAGTGGTA+TGG | 0.458715 | tig0028741:+19124 | Msa1439290:five_prime_UTR |
| CAGATGATGATGCTTTCATA+AGG | 0.464275 | tig0028741:+21449 | Msa1439290:CDS |
| GTCATCTCCTGATAGGGATA+AGG | 0.468655 | tig0028741:+21543 | Msa1439290:CDS |
| CTTTCTGCAGTTTCTCCCAA+AGG | 0.470786 | tig0028741:-22656 | None:intergenic |
| CAATATGAGGCTGTACGTTC+TGG | 0.471244 | tig0028741:+20818 | Msa1439290:CDS |
| AAACGGTTATATTTATTTCA+GGG | 0.474514 | tig0028741:+19097 | Msa1439290:five_prime_UTR |
| CCTGGAGCTGGAGCTGGAGC+TGG | 0.475482 | tig0028741:+18182 | Msa1439290:five_prime_UTR |
| ATCCTTTCACTGCCACATTG+TGG | 0.477470 | tig0028741:+20422 | Msa1439290:CDS |
| GTCTATCTTACTAATCTTCG+AGG | 0.478025 | tig0028741:-19559 | None:intergenic |
| ATTCGTTGTCTTTGGCCACC+AGG | 0.479400 | tig0028741:+21776 | Msa1439290:CDS |
| TTATGAATATGGTGGTGAAT+AGG | 0.483953 | tig0028741:+18144 | None:intergenic |
| GTCAGCACGATTAAAGTAGC+AGG | 0.484951 | tig0028741:+20611 | Msa1439290:CDS |
| AGCTTTCAGATTGAGCTAGC+TGG | 0.485254 | tig0028741:+19726 | Msa1439290:CDS |
| ATTGAACAATTTAGGAATGG+TGG | 0.485712 | tig0028741:+22534 | Msa1439290:CDS |
| AAACTATAATAATCAACAAA+AGG | 0.494113 | tig0028741:-21199 | None:intergenic |
| TTTCTGATCTGCATCGAAAG+AGG | 0.495941 | tig0028741:-19310 | None:intergenic |
| GAGTGTTTCACACCTGGAGC+TGG | 0.501124 | tig0028741:+18170 | Msa1439290:five_prime_UTR |
| TTCTAAGTCATCTCCTGATA+GGG | 0.503233 | tig0028741:+21537 | Msa1439290:CDS |
| TTGATCGGAGTATTCTCTAC+CGG | 0.508883 | tig0028741:+20752 | Msa1439290:CDS |
| AGGACCTCCTCAGAGCCATT+CGG | 0.510477 | tig0028741:-20790 | None:intergenic |
| CTCTTTCAAATTCACATATG+CGG | 0.510976 | tig0028741:+18239 | Msa1439290:five_prime_UTR |
| TCATGCTAAATATACCTTTG+CGG | 0.511523 | tig0028741:-19914 | None:intergenic |
| CGTATATTGTTCAAAATACA+TGG | 0.517784 | tig0028741:+19832 | Msa1439290:CDS |
| ACATTGTGGGTTGGGTCAGA+AGG | 0.519182 | tig0028741:+20436 | Msa1439290:CDS |
| TCGCGAGATATGACATATCC+AGG | 0.523922 | tig0028741:-21744 | None:intergenic |
| GAAGTGCTTTCCAGCCTCAA+AGG | 0.527978 | tig0028741:+21478 | Msa1439290:CDS |
| ATGTTAGCAGAACCATGAGC+AGG | 0.528160 | tig0028741:-19891 | None:intergenic |
| ACCCACAATGTGGCAGTGAA+AGG | 0.532066 | tig0028741:-20424 | None:intergenic |
| GATTCTTCTATTACACTGAT+CGG | 0.533821 | tig0028741:+19681 | Msa1439290:CDS |
| TAAATTAGAAGATGTTGCCA+TGG | 0.541216 | tig0028741:+22503 | Msa1439290:CDS |
| TTCTTAATAGAATCATTTGG+TGG | 0.542201 | tig0028741:-19265 | None:intergenic |
| GTTTATTCAGCACAACATCA+AGG | 0.542401 | tig0028741:+18298 | Msa1439290:five_prime_UTR |
| TGGCACCAAAACCAACAAAA+CGG | 0.544787 | tig0028741:+19334 | Msa1439290:CDS |
| AAATAACTTTGAGCGCCGAA+TGG | 0.546477 | tig0028741:+20775 | Msa1439290:CDS |
| AAGTGCTTTCCAGCCTCAAA+GGG | 0.551248 | tig0028741:+21479 | Msa1439290:CDS |
| AGTTCTATGTGCACTTTCTG+AGG | 0.553560 | tig0028741:-20374 | None:intergenic |
| AAATTAGAAGATGTTGCCAT+GGG | 0.554916 | tig0028741:+22504 | Msa1439290:CDS |
| CCACATTTGATACATGTCAC+AGG | 0.555339 | tig0028741:+19357 | Msa1439290:CDS |
| CCATCTGAAGGCCTCTTGTA+CGG | 0.556208 | tig0028741:+21505 | Msa1439290:CDS |
| TGGATTGAACAATTTAGGAA+TGG | 0.558371 | tig0028741:+22531 | Msa1439290:CDS |
| TTATAATGCAAGATAATTGG+AGG | 0.560890 | tig0028741:-19774 | None:intergenic |
| GTTTATTGAAAATGAAGAAG+TGG | 0.561747 | tig0028741:+19119 | Msa1439290:five_prime_UTR |
| GAGGAAAGATGCCCTGCTCA+TGG | 0.566659 | tig0028741:+19879 | Msa1439290:CDS |
| CTCAAAGGGAAGCCATCTGA+AGG | 0.569898 | tig0028741:+21493 | Msa1439290:CDS |
| CACATGATACGTACCCACCA+TGG | 0.571594 | tig0028741:+21712 | Msa1439290:CDS |
| TTCATATGACTGTAAATGGA+AGG | 0.574417 | tig0028741:+20461 | Msa1439290:CDS |
| ATTTACGTTTGTTGCTGTCG+AGG | 0.575180 | tig0028741:+19448 | Msa1439290:CDS |
| AATAGCTCAAGGAGTTAAAG+AGG | 0.578574 | tig0028741:+19488 | Msa1439290:CDS |
| AGGTATGAGTGTTTCACACC+TGG | 0.578684 | tig0028741:+18164 | Msa1439290:five_prime_UTR |
| CGATGCAGAATCTTGAACCA+TGG | 0.589458 | tig0028741:+20585 | Msa1439290:intron |
| ACATGATACGTACCCACCAT+GGG | 0.589834 | tig0028741:+21713 | Msa1439290:CDS |
| CAGGACCATGTGCCCATGGT+GGG | 0.590057 | tig0028741:-21725 | None:intergenic |
| TATCCAGGACCATGTGCCCA+TGG | 0.590642 | tig0028741:-21729 | None:intergenic |
| TACAGCCTCATATTGCATCC+AGG | 0.592681 | tig0028741:-20810 | None:intergenic |
| TTCATTATGAGAATGATGAG+AGG | 0.592883 | tig0028741:+22565 | Msa1439290:CDS |
| ATCACACTGGATCTCCCTTG+TGG | 0.593261 | tig0028741:+19648 | Msa1439290:CDS |
| TTGCGCATTATCAAAATCCA+AGG | 0.595140 | tig0028741:+22622 | Msa1439290:CDS |
| ACGTACCCACCATGGGCACA+TGG | 0.599828 | tig0028741:+21720 | Msa1439290:CDS |
| GAGCAGTACTTCAGAAACAA+AGG | 0.602118 | tig0028741:-18212 | None:intergenic |
| CACATTTGATACATGTCACA+GGG | 0.607371 | tig0028741:+19358 | Msa1439290:CDS |
| TTAATCGTGCTGACTAACCA+TGG | 0.610947 | tig0028741:-20602 | None:intergenic |
| AAGATATTAGACCGTACAAG+AGG | 0.616932 | tig0028741:-21516 | None:intergenic |
| AAAATGAAGAAGTGGTATGG+AGG | 0.619161 | tig0028741:+19127 | Msa1439290:five_prime_UTR |
| AGTTAATCTTGAATTATGGA+CGG | 0.620195 | tig0028741:+21144 | Msa1439290:CDS |
| AGCTGGACAAGAGCTAGAAG+AGG | 0.621403 | tig0028741:+19743 | Msa1439290:CDS |
| CCAGGACCATGTGCCCATGG+TGG | 0.623499 | tig0028741:-21726 | None:intergenic |
| CCGTACAAGAGGCCTTCAGA+TGG | 0.626770 | tig0028741:-21505 | None:intergenic |
| GAATCTACGACCAAACCACA+AGG | 0.628470 | tig0028741:-19663 | None:intergenic |
| TTGTTCAATCCATATGCCCA+TGG | 0.632568 | tig0028741:-22520 | None:intergenic |
| AGCGCCGAATGGCTCTGAGG+AGG | 0.634744 | tig0028741:+20786 | Msa1439290:CDS |
| GCATTATCAAAATCCAAGGA+TGG | 0.638592 | tig0028741:+22626 | Msa1439290:CDS |
| TCGAAGATTAGTAAGATAGA+CGG | 0.641292 | tig0028741:+19561 | Msa1439290:CDS |
| GACAGATAGTGAAATCACAC+TGG | 0.646133 | tig0028741:+19635 | Msa1439290:CDS |
| GGTTCTGCTAACATCCGCAA+AGG | 0.648279 | tig0028741:+19900 | Msa1439290:CDS |
| TGTTAGCAGAACCATGAGCA+GGG | 0.651531 | tig0028741:-19890 | None:intergenic |
| GAGGTCCTGGATGCAATATG+AGG | 0.652896 | tig0028741:+20805 | Msa1439290:CDS |
| TTGAGCGCCGAATGGCTCTG+AGG | 0.661301 | tig0028741:+20783 | Msa1439290:CDS |
| GCTTTGCCCGAAATAGCTCA+AGG | 0.661971 | tig0028741:+19477 | Msa1439290:CDS |
| ATAGGGATAAGGACAGCAAG+TGG | 0.679605 | tig0028741:+21554 | Msa1439290:CDS |
| TTCTGACCCAACCCACAATG+TGG | 0.693365 | tig0028741:-20434 | None:intergenic |
| TGTTGATGTTGAGAACCTGA+AGG | 0.697040 | tig0028741:+20697 | Msa1439290:CDS |
| CCTGTGACATGTATCAAATG+TGG | 0.710894 | tig0028741:-19357 | None:intergenic |
| CAAGTGGTACATCAGTGACG+AGG | 0.722140 | tig0028741:+21570 | Msa1439290:CDS |
| AATCTACGACCAAACCACAA+GGG | 0.735183 | tig0028741:-19662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTTAAGAAAATAGA+AGG | + | tig0028741:18944-18963 | Msa1439290:intron | 10.0% |
| !! | TAAAAATTAAATAATTGGAA+TGG | + | tig0028741:20537-20556 | Msa1439290:intron | 10.0% |
| !!! | TTATTTTCTATCTATTTTTC+TGG | + | tig0028741:18465-18484 | Msa1439290:intron | 15.0% |
| !!! | CATATTACATTTTCAATATT+TGG | + | tig0028741:18515-18534 | Msa1439290:intron | 15.0% |
| !! | ACTGCTAAAAATTAAATAAT+TGG | + | tig0028741:20532-20551 | Msa1439290:intron | 15.0% |
| !!! | ATTTTTTTAGCACAATAAAA+TGG | + | tig0028741:20937-20956 | Msa1439290:intron | 15.0% |
| !! | AAACTATAATAATCAACAAA+AGG | - | tig0028741:21202-21221 | None:intergenic | 15.0% |
| !!! | CATTATCTTATTGTTATTTT+AGG | + | tig0028741:21683-21702 | Msa1439290:intron | 15.0% |
| !! | TTAATGTCATCTTAAAATTT+GGG | - | tig0028741:22061-22080 | None:intergenic | 15.0% |
| !! | TTTAATGTCATCTTAAAATT+TGG | - | tig0028741:22062-22081 | None:intergenic | 15.0% |
| !! | TTTACTCAAACATTTGAATT+AGG | + | tig0028741:18276-18295 | Msa1439290:five_prime_UTR | 20.0% |
| !! | TTATTGAATCTTAATTGACA+TGG | - | tig0028741:18420-18439 | None:intergenic | 20.0% |
| !!! | ATTACATTTTCAATATTTGG+AGG | + | tig0028741:18518-18537 | Msa1439290:intron | 20.0% |
| !!! | ATAATGCCTTATTATGATAT+AGG | + | tig0028741:18694-18713 | Msa1439290:intron | 20.0% |
| !! | AATGAATAAAAAAGTCATCT+AGG | - | tig0028741:19043-19062 | None:intergenic | 20.0% |
| !! | AAACGGTTATATTTATTTCA+GGG | + | tig0028741:19097-19116 | Msa1439290:five_prime_UTR | 20.0% |
| !!! | GTTTTCTTAATAGAATCATT+TGG | - | tig0028741:19271-19290 | None:intergenic | 20.0% |
| !! | ACATTATAATGCAAGATAAT+TGG | - | tig0028741:19780-19799 | None:intergenic | 20.0% |
| !!! | CATGTATTTTGAACAATATA+CGG | - | tig0028741:19834-19853 | None:intergenic | 20.0% |
| !!! | AAAAATCACATATTTCTAGT+TGG | - | tig0028741:20044-20063 | None:intergenic | 20.0% |
| !! | TCGACAAAAATATAAAATGT+TGG | - | tig0028741:20568-20587 | None:intergenic | 20.0% |
| !! | ATAGAGTTAATCTTGAATTA+TGG | + | tig0028741:21140-21159 | Msa1439290:CDS | 20.0% |
| !!! | TTTTCATGATGTATTTAGAA+GGG | - | tig0028741:21429-21448 | None:intergenic | 20.0% |
| !! | GAAAAATAAAAATTTATGGG+AGG | - | tig0028741:21656-21675 | None:intergenic | 20.0% |
| !!! | TCTTATTGTTATTTTAGGAA+TGG | + | tig0028741:21688-21707 | Msa1439290:intron | 20.0% |
| !! | TTATAACAAAACTTCATGAT+GGG | - | tig0028741:21836-21855 | None:intergenic | 20.0% |
| !! | ATTATAACAAAACTTCATGA+TGG | - | tig0028741:21837-21856 | None:intergenic | 20.0% |
| !!! | GAAGTTTTGTTATAATCTTT+CGG | + | tig0028741:21841-21860 | Msa1439290:intron | 20.0% |
| !! | TATTTCAAGGATATATCTTA+AGG | + | tig0028741:21865-21884 | Msa1439290:intron | 20.0% |
| !! | ATTTCAAGGATATATCTTAA+GGG | + | tig0028741:21866-21885 | Msa1439290:intron | 20.0% |
| !! | TCTGAAAATGAACTTATAAA+TGG | + | tig0028741:22199-22218 | Msa1439290:intron | 20.0% |
| !! | CTGAAAATGAACTTATAAAT+GGG | + | tig0028741:22200-22219 | Msa1439290:intron | 20.0% |
| !! | TGAAAATGAACTTATAAATG+GGG | + | tig0028741:22201-22220 | Msa1439290:intron | 20.0% |
| !! | ATTTGATTCCTCTTAAAATT+TGG | - | tig0028741:22272-22291 | None:intergenic | 20.0% |
| !!! | TTAATATCACAAATTTTCCT+GGG | + | tig0028741:22297-22316 | Msa1439290:intron | 20.0% |
| !! | TAAAAGAATTGGAACTTAAA+TGG | + | tig0028741:22332-22351 | Msa1439290:intron | 20.0% |
| !! | ATAGAATAAAAATGCAATGA+TGG | - | tig0028741:22407-22426 | None:intergenic | 20.0% |
| !! | AAATAAAATTCAGCAGTTAA+TGG | - | tig0028741:22462-22481 | None:intergenic | 20.0% |
| !! | ATTCAAACTTTCTTGTTTCT+TGG | + | tig0028741:18389-18408 | Msa1439290:intron | 25.0% |
| !! | ATTTTCAATATTTGGAGGTT+GGG | + | tig0028741:18523-18542 | Msa1439290:intron | 25.0% |
| !! | AAAAGTATGTGAAGTAGAAT+AGG | + | tig0028741:18662-18681 | Msa1439290:intron | 25.0% |
| ! | TTGCAAAATGCAACAAATAA+TGG | - | tig0028741:18765-18784 | None:intergenic | 25.0% |
| !!! | ATTTGTTGCATTTTGCAAAA+AGG | + | tig0028741:18767-18786 | Msa1439290:intron | 25.0% |
| !! | TTGCAAAAAGGCATAAAATT+AGG | + | tig0028741:18779-18798 | Msa1439290:intron | 25.0% |
| !! | TGCAAAAAGGCATAAAATTA+GGG | + | tig0028741:18780-18799 | Msa1439290:intron | 25.0% |
| ! | ATTTAACATGATCTAATGTG+TGG | - | tig0028741:18827-18846 | None:intergenic | 25.0% |
| ! | GAAACGGTTATATTTATTTC+AGG | + | tig0028741:19096-19115 | Msa1439290:intron | 25.0% |
| ! | GTTTATTGAAAATGAAGAAG+TGG | + | tig0028741:19119-19138 | Msa1439290:five_prime_UTR | 25.0% |
| ! | TTCTTAATAGAATCATTTGG+TGG | - | tig0028741:19268-19287 | None:intergenic | 25.0% |
| ! | TTATAATGCAAGATAATTGG+AGG | - | tig0028741:19777-19796 | None:intergenic | 25.0% |
| ! | CGTATATTGTTCAAAATACA+TGG | + | tig0028741:19832-19851 | Msa1439290:CDS | 25.0% |
| !!! | ATGCAATTATAATGGACAAA+AGG | + | tig0028741:20013-20032 | Msa1439290:intron | 25.0% |
| !! | AATATGTGATTTTTATGTCG+AGG | + | tig0028741:20050-20069 | Msa1439290:intron | 25.0% |
| !! | ATGAAACATCTTTTGCATAT+AGG | + | tig0028741:20485-20504 | Msa1439290:CDS | 25.0% |
| !! | TGAAACATCTTTTGCATATA+GGG | + | tig0028741:20486-20505 | Msa1439290:CDS | 25.0% |
| ! | TTGCTATAATATTGAATGCA+TGG | - | tig0028741:21038-21057 | None:intergenic | 25.0% |
| ! | ACAAGAGAGGAATAATTTAA+AGG | - | tig0028741:21070-21089 | None:intergenic | 25.0% |
| ! | AGTTAATCTTGAATTATGGA+CGG | + | tig0028741:21144-21163 | Msa1439290:CDS | 25.0% |
| !!! | AATCAACAAAAGGCATTAAT+TGG | - | tig0028741:21192-21211 | None:intergenic | 25.0% |
| !! | ACAATTGCAATTTGCATTTT+GGG | + | tig0028741:21235-21254 | Msa1439290:CDS | 25.0% |
| !! | GTTTATTTGTTAGTTAATGC+TGG | + | tig0028741:21306-21325 | Msa1439290:intron | 25.0% |
| !!! | AAGCAGTGATTTTTATTTAG+TGG | + | tig0028741:21334-21353 | Msa1439290:intron | 25.0% |
| !! | GTTTTCATGATGTATTTAGA+AGG | - | tig0028741:21430-21449 | None:intergenic | 25.0% |
| ! | ATAATCTTTCGGATATTTCA+AGG | + | tig0028741:21852-21871 | Msa1439290:intron | 25.0% |
| ! | ATTAAGAGTCTCAAATTGAT+TGG | + | tig0028741:22167-22186 | Msa1439290:intron | 25.0% |
| ! | GAAAATGAACTTATAAATGG+GGG | + | tig0028741:22202-22221 | Msa1439290:intron | 25.0% |
| ! | ATTCCTCTTAAAATTTGGAT+CGG | - | tig0028741:22267-22286 | None:intergenic | 25.0% |
| !! | CTTAATATCACAAATTTTCC+TGG | + | tig0028741:22296-22315 | Msa1439290:intron | 25.0% |
| ! | ACCACTTATGTTAAAAGAAT+TGG | + | tig0028741:22321-22340 | Msa1439290:intron | 25.0% |
| !! | TCCAATTCTTTTAACATAAG+TGG | - | tig0028741:22325-22344 | None:intergenic | 25.0% |
| ! | CTTAAATATGTATTCGCAAA+AGG | + | tig0028741:22373-22392 | Msa1439290:intron | 25.0% |
| !! | ATTCTATTCATCTTGCTATA+TGG | + | tig0028741:22420-22439 | Msa1439290:intron | 25.0% |
| !! | TAATAACTCTGTTGATTATG+AGG | + | tig0028741:22729-22748 | Msa1439290:three_prime_UTR | 25.0% |
| CTCTTTCAAATTCACATATG+CGG | + | tig0028741:18239-18258 | Msa1439290:five_prime_UTR | 30.0% | |
| ! | CATTTTCAATATTTGGAGGT+TGG | + | tig0028741:18522-18541 | Msa1439290:intron | 30.0% |
| ATCCTAGATTCAATCAAACT+CGG | + | tig0028741:18585-18604 | Msa1439290:intron | 30.0% | |
| AGGTTTGAATATCCTAGAAA+TGG | + | tig0028741:18730-18749 | Msa1439290:intron | 30.0% | |
| CAAAATGCAACAAATAATGG+AGG | - | tig0028741:18762-18781 | None:intergenic | 30.0% | |
| AAATTCTTTGTCTGCAGAAA+CGG | + | tig0028741:19080-19099 | Msa1439290:intron | 30.0% | |
| TTGAAAATGAAGAAGTGGTA+TGG | + | tig0028741:19124-19143 | Msa1439290:five_prime_UTR | 30.0% | |
| TACCTAAAGCCATGATAAAA+AGG | - | tig0028741:19153-19172 | None:intergenic | 30.0% | |
| TTTCTACTGTACAGTCTTAA+AGG | + | tig0028741:19181-19200 | Msa1439290:five_prime_UTR | 30.0% | |
| CAATGAATGTTGTACTTGTT+TGG | + | tig0028741:19421-19440 | Msa1439290:CDS | 30.0% | |
| TTTAACTCCTTGAGCTATTT+CGG | - | tig0028741:19487-19506 | None:intergenic | 30.0% | |
| TCGAAGATTAGTAAGATAGA+CGG | + | tig0028741:19561-19580 | Msa1439290:CDS | 30.0% | |
| !!! | ATGGACAGTTTTGATTTTCT+GGG | - | tig0028741:19587-19606 | None:intergenic | 30.0% |
| !!! | AATGGACAGTTTTGATTTTC+TGG | - | tig0028741:19588-19607 | None:intergenic | 30.0% |
| GATTCTTCTATTACACTGAT+CGG | + | tig0028741:19681-19700 | Msa1439290:CDS | 30.0% | |
| !!! | AATACATGGACTAGTGATTT+TGG | + | tig0028741:19846-19865 | Msa1439290:CDS | 30.0% |
| !!! | ATACATGGACTAGTGATTTT+GGG | + | tig0028741:19847-19866 | Msa1439290:CDS | 30.0% |
| TCATGCTAAATATACCTTTG+CGG | - | tig0028741:19917-19936 | None:intergenic | 30.0% | |
| TCGTTTGCATGCAATTATAA+TGG | + | tig0028741:20005-20024 | Msa1439290:intron | 30.0% | |
| TTTATAATTCGAACCTAGCT+TGG | + | tig0028741:20088-20107 | Msa1439290:intron | 30.0% | |
| AAACTGCACTCAAGAATAAA+AGG | - | tig0028741:20200-20219 | None:intergenic | 30.0% | |
| !!! | TTGAGTGCAGTTTTTTATGA+GGG | + | tig0028741:20207-20226 | Msa1439290:intron | 30.0% |
| ! | CTTTCTGAGGAAATATTAGA+AGG | - | tig0028741:20364-20383 | None:intergenic | 30.0% |
| GGATTTCATATGACTGTAAA+TGG | + | tig0028741:20457-20476 | Msa1439290:CDS | 30.0% | |
| TTCATATGACTGTAAATGGA+AGG | + | tig0028741:20461-20480 | Msa1439290:CDS | 30.0% | |
| TTTAAGTCTGTTATCAGTTC+TGG | + | tig0028741:20637-20656 | Msa1439290:CDS | 30.0% | |
| ATATCATTATCTTCCGTAAC+AGG | - | tig0028741:20674-20693 | None:intergenic | 30.0% | |
| ! | ACAAAACAAGCCTTTTTCTA+GGG | - | tig0028741:20733-20752 | None:intergenic | 30.0% |
| ! | AACAAAACAAGCCTTTTTCT+AGG | - | tig0028741:20734-20753 | None:intergenic | 30.0% |
| !!! | AAAAGGCTTGTTTTGTTGAT+CGG | + | tig0028741:20737-20756 | Msa1439290:CDS | 30.0% |
| TAGCACAATAAAATGGCAAT+AGG | + | tig0028741:20944-20963 | Msa1439290:intron | 30.0% | |
| ! | AGAACAGTTTTTAACAAGAG+AGG | - | tig0028741:21083-21102 | None:intergenic | 30.0% |
| ! | GACAATTGCAATTTGCATTT+TGG | + | tig0028741:21234-21253 | Msa1439290:CDS | 30.0% |
| ! | CAATTGCAATTTGCATTTTG+GGG | + | tig0028741:21236-21255 | Msa1439290:CDS | 30.0% |
| ! | AATTGCAATTTGCATTTTGG+GGG | + | tig0028741:21237-21256 | Msa1439290:CDS | 30.0% |
| ATAGCAAAATTCGTTGTCTT+TGG | + | tig0028741:21768-21787 | Msa1439290:CDS | 30.0% | |
| !! | TTACTTTGAGTTTTCTTTCC+TGG | - | tig0028741:21797-21816 | None:intergenic | 30.0% |
| CAACAATCAAGTAAAGTATG+CGG | - | tig0028741:21922-21941 | None:intergenic | 30.0% | |
| GCATACTTTACTTGATTGTT+GGG | + | tig0028741:21921-21940 | Msa1439290:intron | 30.0% | |
| CACAAAATGAGTTCATAAGT+GGG | + | tig0028741:21985-22004 | Msa1439290:intron | 30.0% | |
| ACAAAATGAGTTCATAAGTG+GGG | + | tig0028741:21986-22005 | Msa1439290:intron | 30.0% | |
| TAACTCAACCATTACAAATC+TGG | - | tig0028741:22031-22050 | None:intergenic | 30.0% | |
| AGATTTGTAATGGTTGAGTT+AGG | + | tig0028741:22030-22049 | Msa1439290:intron | 30.0% | |
| ! | GTCATCTTAAAATTTGGGTT+GGG | - | tig0028741:22056-22075 | None:intergenic | 30.0% |
| TGTCATCTTAAAATTTGGGT+TGG | - | tig0028741:22057-22076 | None:intergenic | 30.0% | |
| AAAACCTAACAAAAACCCAT+TGG | + | tig0028741:22079-22098 | Msa1439290:intron | 30.0% | |
| AAACCTAACAAAAACCCATT+GGG | + | tig0028741:22080-22099 | Msa1439290:intron | 30.0% | |
| TTCCTCTTAAAATTTGGATC+GGG | - | tig0028741:22266-22285 | None:intergenic | 30.0% | |
| AAAATTCAGCAGTTAATGGA+AGG | - | tig0028741:22458-22477 | None:intergenic | 30.0% | |
| TAAATTAGAAGATGTTGCCA+TGG | + | tig0028741:22503-22522 | Msa1439290:CDS | 30.0% | |
| AAATTAGAAGATGTTGCCAT+GGG | + | tig0028741:22504-22523 | Msa1439290:CDS | 30.0% | |
| ! | GCATATGGATTGAACAATTT+AGG | + | tig0028741:22526-22545 | Msa1439290:CDS | 30.0% |
| TGGATTGAACAATTTAGGAA+TGG | + | tig0028741:22531-22550 | Msa1439290:CDS | 30.0% | |
| ATTGAACAATTTAGGAATGG+TGG | + | tig0028741:22534-22553 | Msa1439290:CDS | 30.0% | |
| TTCATTATGAGAATGATGAG+AGG | + | tig0028741:22565-22584 | Msa1439290:CDS | 30.0% | |
| GTTTATTCAGCACAACATCA+AGG | + | tig0028741:18298-18317 | Msa1439290:five_prime_UTR | 35.0% | |
| !! | AGCTCAACTGATTTGAGTTA+AGG | + | tig0028741:18547-18566 | Msa1439290:intron | 35.0% |
| GGGACTCCTATATCATAATA+AGG | - | tig0028741:18703-18722 | None:intergenic | 35.0% | |
| AGGATATTCAAACCTCACAA+CGG | - | tig0028741:18725-18744 | None:intergenic | 35.0% | |
| ! | ATGCAACAAATAATGGAGGA+AGG | - | tig0028741:18758-18777 | None:intergenic | 35.0% |
| GTAACAACATGTGTTAGTGT+TGG | + | tig0028741:18974-18993 | Msa1439290:intron | 35.0% | |
| AAAATGAAGAAGTGGTATGG+AGG | + | tig0028741:19127-19146 | Msa1439290:five_prime_UTR | 35.0% | |
| !! | TAGAATCATTTGGTGGTGAA+TGG | - | tig0028741:19261-19280 | None:intergenic | 35.0% |
| TTTCGATGCAGATCAGAAAA+TGG | + | tig0028741:19314-19333 | Msa1439290:exon | 35.0% | |
| CACATTTGATACATGTCACA+GGG | + | tig0028741:19358-19377 | Msa1439290:CDS | 35.0% | |
| ! | TTAACTCCTTGAGCTATTTC+GGG | - | tig0028741:19486-19505 | None:intergenic | 35.0% |
| AATAGCTCAAGGAGTTAAAG+AGG | + | tig0028741:19488-19507 | Msa1439290:CDS | 35.0% | |
| GTCTATCTTACTAATCTTCG+AGG | - | tig0028741:19562-19581 | None:intergenic | 35.0% | |
| ! | AGCTACTGTTTTGTCCATTA+GGG | - | tig0028741:19710-19729 | None:intergenic | 35.0% |
| ! | AAGCTACTGTTTTGTCCATT+AGG | - | tig0028741:19711-19730 | None:intergenic | 35.0% |
| TGCAAGATAATTGGAGGATT+TGG | - | tig0028741:19771-19790 | None:intergenic | 35.0% | |
| CATTATAATGTGAGTCTTCC+TGG | + | tig0028741:19789-19808 | Msa1439290:CDS | 35.0% | |
| AACAAGACATAATCCAAGCT+AGG | - | tig0028741:20104-20123 | None:intergenic | 35.0% | |
| TACCATCTTCATTCCTTAGT+AGG | + | tig0028741:20128-20147 | Msa1439290:intron | 35.0% | |
| !!! | CTTGAGTGCAGTTTTTTATG+AGG | + | tig0028741:20206-20225 | Msa1439290:intron | 35.0% |
| ! | TTTATGAGGGAAGCTTTTAG+TGG | + | tig0028741:20220-20239 | Msa1439290:intron | 35.0% |
| CATCAACTACATCATAGAGT+TGG | - | tig0028741:20261-20280 | None:intergenic | 35.0% | |
| ! | TGCTAATTTCCCTTTTTCTG+AGG | + | tig0028741:20396-20415 | Msa1439290:CDS | 35.0% |
| !! | AAGGATTAGCCTCAGAAAAA+GGG | - | tig0028741:20408-20427 | None:intergenic | 35.0% |
| !! | AAAGGATTAGCCTCAGAAAA+AGG | - | tig0028741:20409-20428 | None:intergenic | 35.0% |
| ! | AACATCTTTTGCATATAGGG+AGG | + | tig0028741:20489-20508 | Msa1439290:CDS | 35.0% |
| ! | CATATAGGGAGGTATGATAT+AGG | + | tig0028741:20500-20519 | Msa1439290:intron | 35.0% |
| ! | GTTGCTGTCAGATTTTTCAT+TGG | + | tig0028741:20845-20864 | Msa1439290:CDS | 35.0% |
| ! | CAGATGATGATGCTTTCATA+AGG | + | tig0028741:21449-21468 | Msa1439290:CDS | 35.0% |
| AAGATATTAGACCGTACAAG+AGG | - | tig0028741:21519-21538 | None:intergenic | 35.0% | |
| TTCTAAGTCATCTCCTGATA+GGG | + | tig0028741:21537-21556 | Msa1439290:CDS | 35.0% | |
| ! | ACAAAACTTCATGATGGGAA+AGG | - | tig0028741:21831-21850 | None:intergenic | 35.0% |
| !! | CTCGTATTAGAAGTGTCAAA+AGG | + | tig0028741:21893-21912 | Msa1439290:intron | 35.0% |
| CGCATACTTTACTTGATTGT+TGG | + | tig0028741:21920-21939 | Msa1439290:intron | 35.0% | |
| TTTACTTGATTGTTGGGACT+GGG | + | tig0028741:21927-21946 | Msa1439290:intron | 35.0% | |
| GGACTTATCTCATCAAATGT+GGG | - | tig0028741:21966-21985 | None:intergenic | 35.0% | |
| TGGACTTATCTCATCAAATG+TGG | - | tig0028741:21967-21986 | None:intergenic | 35.0% | |
| ! | CCACTTATGAACTCATTTTG+TGG | - | tig0028741:21987-22006 | None:intergenic | 35.0% |
| CCACAAAATGAGTTCATAAG+TGG | + | tig0028741:21984-22003 | Msa1439290:intron | 35.0% | |
| CAAAATGAGTTCATAAGTGG+GGG | + | tig0028741:21987-22006 | Msa1439290:intron | 35.0% | |
| ! | CATTACAAATCTGGCTTGTA+AGG | - | tig0028741:22022-22041 | None:intergenic | 35.0% |
| CTTACAAGCCAGATTTGTAA+TGG | + | tig0028741:22020-22039 | Msa1439290:intron | 35.0% | |
| CTCAAATTGATTGGATGAGA+AGG | + | tig0028741:22176-22195 | Msa1439290:intron | 35.0% | |
| TCAATCCTTACAAAACCGTA+AGG | - | tig0028741:22237-22256 | None:intergenic | 35.0% | |
| !! | GGTTTTGTAAGGATTGAGTT+AGG | + | tig0028741:22240-22259 | Msa1439290:intron | 35.0% |
| ! | TTTTAACATAAGTGGTTCCC+AGG | - | tig0028741:22317-22336 | None:intergenic | 35.0% |
| TTGCGCATTATCAAAATCCA+AGG | + | tig0028741:22622-22641 | Msa1439290:CDS | 35.0% | |
| GCATTATCAAAATCCAAGGA+TGG | + | tig0028741:22626-22645 | Msa1439290:CDS | 35.0% | |
| GATATCTACTCACAACATTC+TGG | - | tig0028741:22690-22709 | None:intergenic | 35.0% | |
| GAGCAGTACTTCAGAAACAA+AGG | - | tig0028741:18215-18234 | None:intergenic | 40.0% | |
| TGAGTTAAGGAATACGAAGC+TGG | + | tig0028741:18560-18579 | Msa1439290:intron | 40.0% | |
| GTCCGAGTTTGATTGAATCT+AGG | - | tig0028741:18590-18609 | None:intergenic | 40.0% | |
| GATATTCAAACCTCACAACG+GGG | - | tig0028741:18723-18742 | None:intergenic | 40.0% | |
| GGATATTCAAACCTCACAAC+GGG | - | tig0028741:18724-18743 | None:intergenic | 40.0% | |
| ! | CTTGAGATTGAAAGCGTGTT+CGG | - | tig0028741:19003-19022 | None:intergenic | 40.0% |
| ACGCTTTCAATCTCAAGTGT+CGG | + | tig0028741:19006-19025 | Msa1439290:intron | 40.0% | |
| ! | GTATGGAGGCCTTTTTATCA+TGG | + | tig0028741:19141-19160 | Msa1439290:five_prime_UTR | 40.0% |
| ! | GGCCTTTTTATCATGGCTTT+AGG | + | tig0028741:19148-19167 | Msa1439290:five_prime_UTR | 40.0% |
| !! | TGTTTTGCTGACTGCTTTTG+TGG | - | tig0028741:19214-19233 | None:intergenic | 40.0% |
| TTTCTGATCTGCATCGAAAG+AGG | - | tig0028741:19313-19332 | None:intergenic | 40.0% | |
| TGGCACCAAAACCAACAAAA+CGG | + | tig0028741:19334-19353 | Msa1439290:CDS | 40.0% | |
| !! | ATCAAATGTGGCCGTTTTGT+TGG | - | tig0028741:19348-19367 | None:intergenic | 40.0% |
| CCTGTGACATGTATCAAATG+TGG | - | tig0028741:19360-19379 | None:intergenic | 40.0% | |
| CCACATTTGATACATGTCAC+AGG | + | tig0028741:19357-19376 | Msa1439290:CDS | 40.0% | |
| ! | ATTTACGTTTGTTGCTGTCG+AGG | + | tig0028741:19448-19467 | Msa1439290:CDS | 40.0% |
| TTAAAGAGGCTTCTGTAGCT+TGG | + | tig0028741:19502-19521 | Msa1439290:CDS | 40.0% | |
| TGTCATTGTCTTGCCAAGTT+TGG | - | tig0028741:19619-19638 | None:intergenic | 40.0% | |
| GACAGATAGTGAAATCACAC+TGG | + | tig0028741:19635-19654 | Msa1439290:CDS | 40.0% | |
| AATCTACGACCAAACCACAA+GGG | - | tig0028741:19665-19684 | None:intergenic | 40.0% | |
| ! | ATCTCTGTCATGTTTTCTCC+AGG | - | tig0028741:19810-19829 | None:intergenic | 40.0% |
| !!! | ATGGACTAGTGATTTTGGGT+GGG | + | tig0028741:19851-19870 | Msa1439290:CDS | 40.0% |
| AGCCTACTAAGGAATGAAGA+TGG | - | tig0028741:20133-20152 | None:intergenic | 40.0% | |
| GTAGTTACTACAGCCTACTA+AGG | - | tig0028741:20144-20163 | None:intergenic | 40.0% | |
| AACTACATTAGCAACACCTC+AGG | + | tig0028741:20158-20177 | Msa1439290:intron | 40.0% | |
| AAGCAAGATAGCATAACCTG+AGG | - | tig0028741:20177-20196 | None:intergenic | 40.0% | |
| AGTTCTATGTGCACTTTCTG+AGG | - | tig0028741:20377-20396 | None:intergenic | 40.0% | |
| !! | TTAATCGTGCTGACTAACCA+TGG | - | tig0028741:20605-20624 | None:intergenic | 40.0% |
| ! | CTGTTATCAGTTCTGGCTAA+AGG | + | tig0028741:20644-20663 | Msa1439290:CDS | 40.0% |
| GGCTAAAGGTTTACCTGTTA+CGG | + | tig0028741:20658-20677 | Msa1439290:CDS | 40.0% | |
| TGTTGATGTTGAGAACCTGA+AGG | + | tig0028741:20697-20716 | Msa1439290:CDS | 40.0% | |
| ! | TTGATCGGAGTATTCTCTAC+CGG | + | tig0028741:20752-20771 | Msa1439290:CDS | 40.0% |
| !! | AAATAACTTTGAGCGCCGAA+TGG | + | tig0028741:20775-20794 | Msa1439290:CDS | 40.0% |
| GGGTTAAGACTGTTAGAGTA+TGG | - | tig0028741:20990-21009 | None:intergenic | 40.0% | |
| TTAGTCCACACTACAGCATT+TGG | - | tig0028741:21014-21033 | None:intergenic | 40.0% | |
| CTTCTAAGTCATCTCCTGAT+AGG | + | tig0028741:21536-21555 | Msa1439290:CDS | 40.0% | |
| !! | CTTTGAGTTTTCTTTCCTGG+TGG | - | tig0028741:21794-21813 | None:intergenic | 40.0% |
| ! | AAACTTCATGATGGGAAAGG+AGG | - | tig0028741:21828-21847 | None:intergenic | 40.0% |
| CTTTACTTGATTGTTGGGAC+TGG | + | tig0028741:21926-21945 | Msa1439290:intron | 40.0% | |
| CACTCACTATTGGAACACTT+GGG | + | tig0028741:22104-22123 | Msa1439290:intron | 40.0% | |
| !! | TCTCACCTTACGGTTTTGTA+AGG | + | tig0028741:22229-22248 | Msa1439290:intron | 40.0% |
| TTGTTCAATCCATATGCCCA+TGG | - | tig0028741:22523-22542 | None:intergenic | 40.0% | |
| ! | GATGAGAGGTTTTACAATGC+TGG | + | tig0028741:22579-22598 | Msa1439290:CDS | 40.0% |
| !! | AAGGATGGTGTTATGCCTTT+GGG | + | tig0028741:22641-22660 | Msa1439290:CDS | 40.0% |
| AGGTATGAGTGTTTCACACC+TGG | + | tig0028741:18164-18183 | Msa1439290:five_prime_UTR | 45.0% | |
| CGCTTTCAATCTCAAGTGTC+GGG | + | tig0028741:19007-19026 | Msa1439290:intron | 45.0% | |
| ! | GCTTTCAATCTCAAGTGTCG+GGG | + | tig0028741:19008-19027 | Msa1439290:intron | 45.0% |
| !!! | TGTGGCCGTTTTGTTGGTTT+TGG | - | tig0028741:19342-19361 | None:intergenic | 45.0% |
| CCAAGTTTGGTCACAGAGAA+TGG | - | tig0028741:19606-19625 | None:intergenic | 45.0% | |
| CCATTCTCTGTGACCAAACT+TGG | + | tig0028741:19603-19622 | Msa1439290:CDS | 45.0% | |
| GAATCTACGACCAAACCACA+AGG | - | tig0028741:19666-19685 | None:intergenic | 45.0% | |
| AGCTTTCAGATTGAGCTAGC+TGG | + | tig0028741:19726-19745 | Msa1439290:CDS | 45.0% | |
| !!! | CATGGACTAGTGATTTTGGG+TGG | + | tig0028741:19850-19869 | Msa1439290:CDS | 45.0% |
| !!! | TGGACTAGTGATTTTGGGTG+GGG | + | tig0028741:19852-19871 | Msa1439290:CDS | 45.0% |
| TGTTAGCAGAACCATGAGCA+GGG | - | tig0028741:19893-19912 | None:intergenic | 45.0% | |
| ATGTTAGCAGAACCATGAGC+AGG | - | tig0028741:19894-19913 | None:intergenic | 45.0% | |
| ATCCTTTCACTGCCACATTG+TGG | + | tig0028741:20422-20441 | Msa1439290:CDS | 45.0% | |
| TCCTTTCACTGCCACATTGT+GGG | + | tig0028741:20423-20442 | Msa1439290:CDS | 45.0% | |
| CGATGCAGAATCTTGAACCA+TGG | + | tig0028741:20585-20604 | Msa1439290:intron | 45.0% | |
| GTCAGCACGATTAAAGTAGC+AGG | + | tig0028741:20611-20630 | Msa1439290:CDS | 45.0% | |
| CTCCAGCTATCCCTAGAAAA+AGG | + | tig0028741:20720-20739 | Msa1439290:CDS | 45.0% | |
| !! | AGCCTTTTTCTAGGGATAGC+TGG | - | tig0028741:20725-20744 | None:intergenic | 45.0% |
| ! | TCGGCGCTCAAAGTTATTTC+CGG | - | tig0028741:20774-20793 | None:intergenic | 45.0% |
| TACAGCCTCATATTGCATCC+AGG | - | tig0028741:20813-20832 | None:intergenic | 45.0% | |
| CAATATGAGGCTGTACGTTC+TGG | + | tig0028741:20818-20837 | Msa1439290:CDS | 45.0% | |
| TCCACACTACAGCATTTGGT+GGG | - | tig0028741:21010-21029 | None:intergenic | 45.0% | |
| AAGTGCTTTCCAGCCTCAAA+GGG | + | tig0028741:21479-21498 | Msa1439290:CDS | 45.0% | |
| GTCATCTCCTGATAGGGATA+AGG | + | tig0028741:21543-21562 | Msa1439290:CDS | 45.0% | |
| TTGCTGTCCTTATCCCTATC+AGG | - | tig0028741:21553-21572 | None:intergenic | 45.0% | |
| ATAGGGATAAGGACAGCAAG+TGG | + | tig0028741:21554-21573 | Msa1439290:CDS | 45.0% | |
| ACATGATACGTACCCACCAT+GGG | + | tig0028741:21713-21732 | Msa1439290:CDS | 45.0% | |
| TCGCGAGATATGACATATCC+AGG | - | tig0028741:21747-21766 | None:intergenic | 45.0% | |
| CTCATCAAATGTGGGACTCT+TGG | - | tig0028741:21958-21977 | None:intergenic | 45.0% | |
| !! | TGGCCCAATGGGTTTTTGTT+AGG | - | tig0028741:22086-22105 | None:intergenic | 45.0% |
| CCAAGTGTTCCAATAGTGAG+TGG | - | tig0028741:22106-22125 | None:intergenic | 45.0% | |
| CCACTCACTATTGGAACACT+TGG | + | tig0028741:22103-22122 | Msa1439290:intron | 45.0% | |
| ACACTCCATATGTCCAGTCT+TGG | + | tig0028741:22129-22148 | Msa1439290:intron | 45.0% | |
| CACTCCATATGTCCAGTCTT+GGG | + | tig0028741:22130-22149 | Msa1439290:intron | 45.0% | |
| ATATGTCATACGCCCAAGAC+TGG | - | tig0028741:22145-22164 | None:intergenic | 45.0% | |
| ! | GGCCCGATCCAAATTTTAAG+AGG | + | tig0028741:22261-22280 | Msa1439290:intron | 45.0% |
| AAGATGTTGCCATGGGCATA+TGG | + | tig0028741:22511-22530 | Msa1439290:CDS | 45.0% | |
| ! | CAAAGGCATAACACCATCCT+TGG | - | tig0028741:22642-22661 | None:intergenic | 45.0% |
| !! | CAAGGATGGTGTTATGCCTT+TGG | + | tig0028741:22640-22659 | Msa1439290:CDS | 45.0% |
| CTTTCTGCAGTTTCTCCCAA+AGG | - | tig0028741:22659-22678 | None:intergenic | 45.0% | |
| !! | TAAAAAATAAATAACAAATA+AGG | - | tig0028741:21388-21407 | None:intergenic | 5.0% |
| !! | ATAGAAAAATAAAAATTTAT+GGG | - | tig0028741:21659-21678 | None:intergenic | 5.0% |
| !! | AATAGAAAAATAAAAATTTA+TGG | - | tig0028741:21660-21679 | None:intergenic | 5.0% |
| ATATAGGAGTCCCCGTTGTG+AGG | + | tig0028741:18710-18729 | Msa1439290:intron | 50.0% | |
| TGGAGGAAGGAGCCATTTCT+AGG | - | tig0028741:18745-18764 | None:intergenic | 50.0% | |
| GCTTTGCCCGAAATAGCTCA+AGG | + | tig0028741:19477-19496 | Msa1439290:CDS | 50.0% | |
| ATCACACTGGATCTCCCTTG+TGG | + | tig0028741:19648-19667 | Msa1439290:CDS | 50.0% | |
| ACTGGATCTCCCTTGTGGTT+TGG | + | tig0028741:19653-19672 | Msa1439290:CDS | 50.0% | |
| ACACTGATCGGCATCCCTAA+TGG | + | tig0028741:19693-19712 | Msa1439290:CDS | 50.0% | |
| AGCTGGACAAGAGCTAGAAG+AGG | + | tig0028741:19743-19762 | Msa1439290:CDS | 50.0% | |
| !! | GGACTAGTGATTTTGGGTGG+GGG | + | tig0028741:19853-19872 | Msa1439290:CDS | 50.0% |
| !! | TGATTTTGGGTGGGGGAAAG+AGG | + | tig0028741:19860-19879 | Msa1439290:CDS | 50.0% |
| GGTTCTGCTAACATCCGCAA+AGG | + | tig0028741:19900-19919 | Msa1439290:CDS | 50.0% | |
| ACCCACAATGTGGCAGTGAA+AGG | - | tig0028741:20427-20446 | None:intergenic | 50.0% | |
| TTCACTGCCACATTGTGGGT+TGG | + | tig0028741:20427-20446 | Msa1439290:CDS | 50.0% | |
| TCACTGCCACATTGTGGGTT+GGG | + | tig0028741:20428-20447 | Msa1439290:CDS | 50.0% | |
| TTCTGACCCAACCCACAATG+TGG | - | tig0028741:20437-20456 | None:intergenic | 50.0% | |
| !! | ACATTGTGGGTTGGGTCAGA+AGG | + | tig0028741:20436-20455 | Msa1439290:CDS | 50.0% |
| GAGGTCCTGGATGCAATATG+AGG | + | tig0028741:20805-20824 | Msa1439290:CDS | 50.0% | |
| ACCCACCAAATGCTGTAGTG+TGG | + | tig0028741:21006-21025 | Msa1439290:intron | 50.0% | |
| GTCCACACTACAGCATTTGG+TGG | - | tig0028741:21011-21030 | None:intergenic | 50.0% | |
| TGGACGGAAGCTCAAGCATA+TGG | + | tig0028741:21160-21179 | Msa1439290:CDS | 50.0% | |
| ! | GAAGTGCTTTCCAGCCTCAA+AGG | + | tig0028741:21478-21497 | Msa1439290:CDS | 50.0% |
| CTTCAGATGGCTTCCCTTTG+AGG | - | tig0028741:21495-21514 | None:intergenic | 50.0% | |
| CTCAAAGGGAAGCCATCTGA+AGG | + | tig0028741:21493-21512 | Msa1439290:CDS | 50.0% | |
| CCATCTGAAGGCCTCTTGTA+CGG | + | tig0028741:21505-21524 | Msa1439290:CDS | 50.0% | |
| CAAGTGGTACATCAGTGACG+AGG | + | tig0028741:21570-21589 | Msa1439290:CDS | 50.0% | |
| ACACACACACACACACACAG+AGG | - | tig0028741:21602-21621 | None:intergenic | 50.0% | |
| CACATGATACGTACCCACCA+TGG | + | tig0028741:21712-21731 | Msa1439290:CDS | 50.0% | |
| ATTCGTTGTCTTTGGCCACC+AGG | + | tig0028741:21776-21795 | Msa1439290:CDS | 50.0% | |
| CCAATAGTGAGTGGCCCAAT+GGG | - | tig0028741:22097-22116 | None:intergenic | 50.0% | |
| TCCAATAGTGAGTGGCCCAA+TGG | - | tig0028741:22098-22117 | None:intergenic | 50.0% | |
| TACGCCCAAGACTGGACATA+TGG | - | tig0028741:22137-22156 | None:intergenic | 50.0% | |
| GAGTGTTTCACACCTGGAGC+TGG | + | tig0028741:18170-18189 | Msa1439290:five_prime_UTR | 55.0% | |
| GAGGAAAGATGCCCTGCTCA+TGG | + | tig0028741:19879-19898 | Msa1439290:CDS | 55.0% | |
| TAGGGATAGCTGGAGCCTTC+AGG | - | tig0028741:20715-20734 | None:intergenic | 55.0% | |
| AGGACCTCCTCAGAGCCATT+CGG | - | tig0028741:20793-20812 | None:intergenic | 55.0% | |
| !! | AGATGGCTTCCCTTTGAGGC+TGG | - | tig0028741:21491-21510 | None:intergenic | 55.0% |
| CCGTACAAGAGGCCTTCAGA+TGG | - | tig0028741:21508-21527 | None:intergenic | 55.0% | |
| TATCCAGGACCATGTGCCCA+TGG | - | tig0028741:21732-21751 | None:intergenic | 55.0% | |
| CCCATTGGGCCACTCACTAT+TGG | + | tig0028741:22094-22113 | Msa1439290:intron | 55.0% | |
| TGGGGGCAGTTCTCACCTTA+CGG | + | tig0028741:22219-22238 | Msa1439290:intron | 55.0% | |
| TTCACACCTGGAGCTGGAGC+TGG | + | tig0028741:18176-18195 | Msa1439290:five_prime_UTR | 60.0% | |
| !! | TTGAGCGCCGAATGGCTCTG+AGG | + | tig0028741:20783-20802 | Msa1439290:CDS | 60.0% |
| !! | GAATGGCTCTGAGGAGGTCC+TGG | + | tig0028741:20792-20811 | Msa1439290:CDS | 60.0% |
| ACGTACCCACCATGGGCACA+TGG | + | tig0028741:21720-21739 | Msa1439290:CDS | 60.0% | |
| CAGGACCATGTGCCCATGGT+GGG | - | tig0028741:21728-21747 | None:intergenic | 60.0% | |
| !! | AGCGCCGAATGGCTCTGAGG+AGG | + | tig0028741:20786-20805 | Msa1439290:CDS | 65.0% |
| CCAGGACCATGTGCCCATGG+TGG | - | tig0028741:21729-21748 | None:intergenic | 65.0% | |
| CCACCATGGGCACATGGTCC+TGG | + | tig0028741:21726-21745 | Msa1439290:CDS | 65.0% | |
| CCAGCTCCAGCTCCAGCTCC+AGG | - | tig0028741:18185-18204 | None:intergenic | 70.0% | |
| CCTGGAGCTGGAGCTGGAGC+TGG | + | tig0028741:18182-18201 | Msa1439290:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028741 | gene | 18159 | 22846 | 18159 | ID=Msa1439290;Name=Msa1439290 |
| tig0028741 | mRNA | 18159 | 22846 | 18159 | ID=Msa1439290-mRNA-1;Parent=Msa1439290;Name=Msa1439290-mRNA-1;_AED=0.20;_eAED=0.20;_QI=397|1|1|1|0.85|0.75|8|142|574 |
| tig0028741 | exon | 18159 | 18319 | 18159 | ID=Msa1439290-mRNA-1:exon:11704;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 19097 | 19921 | 19097 | ID=Msa1439290-mRNA-1:exon:11705;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 20275 | 20510 | 20275 | ID=Msa1439290-mRNA-1:exon:11706;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 20593 | 20871 | 20593 | ID=Msa1439290-mRNA-1:exon:11707;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 21130 | 21258 | 21130 | ID=Msa1439290-mRNA-1:exon:11708;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 21415 | 21591 | 21415 | ID=Msa1439290-mRNA-1:exon:11709;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 21705 | 21812 | 21705 | ID=Msa1439290-mRNA-1:exon:11710;Parent=Msa1439290-mRNA-1 |
| tig0028741 | exon | 22498 | 22846 | 22498 | ID=Msa1439290-mRNA-1:exon:11711;Parent=Msa1439290-mRNA-1 |
| tig0028741 | five_prime_UTR | 18159 | 18319 | 18159 | ID=Msa1439290-mRNA-1:five_prime_utr;Parent=Msa1439290-mRNA-1 |
| tig0028741 | five_prime_UTR | 19097 | 19332 | 19097 | ID=Msa1439290-mRNA-1:five_prime_utr;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 19333 | 19921 | 19333 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 20275 | 20510 | 20275 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 20593 | 20871 | 20593 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 21130 | 21258 | 21130 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 21415 | 21591 | 21415 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 21705 | 21812 | 21705 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | CDS | 22498 | 22704 | 22498 | ID=Msa1439290-mRNA-1:cds;Parent=Msa1439290-mRNA-1 |
| tig0028741 | three_prime_UTR | 22705 | 22846 | 22705 | ID=Msa1439290-mRNA-1:three_prime_utr;Parent=Msa1439290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
