Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451470 | sp|Q9ASW1|B3GTG_ARATH | 53.715 | 646 | 250 | 8 | 1 | 642 | 19 | 619 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451470 | A0A072URG8 | 97.040 | 642 | 19 | 0 | 1 | 642 | 1 | 642 | 0.0 | 1300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1439290 | Msa1451470 | 0.981569 | 6.556211e-153 | -8.615850e-47 |
| Msa1204290 | Msa1451470 | 0.892057 | 2.253808e-74 | -8.615850e-47 |
| Msa1204310 | Msa1451470 | 0.939530 | 1.089392e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451470 | MtrunA17_Chr4g0068981 | 97.040 | 642 | 19 | 0 | 1 | 642 | 1 | 642 | 0.0 | 1300 |
| Msa1451470 | MtrunA17_Chr5g0417441 | 49.614 | 647 | 307 | 8 | 1 | 641 | 1 | 634 | 0.0 | 618 |
| Msa1451470 | MtrunA17_Chr2g0285521 | 36.460 | 565 | 316 | 12 | 110 | 641 | 132 | 686 | 8.25e-112 | 351 |
| Msa1451470 | MtrunA17_Chr4g0059801 | 37.477 | 539 | 304 | 15 | 120 | 641 | 90 | 612 | 3.19e-110 | 344 |
| Msa1451470 | MtrunA17_Chr5g0415331 | 35.907 | 557 | 319 | 14 | 116 | 641 | 91 | 640 | 2.52e-106 | 335 |
| Msa1451470 | MtrunA17_Chr8g0363761 | 34.532 | 556 | 322 | 15 | 116 | 641 | 106 | 649 | 8.88e-102 | 323 |
| Msa1451470 | MtrunA17_Chr8g0360581 | 25.954 | 262 | 173 | 9 | 391 | 641 | 80 | 331 | 3.88e-12 | 68.2 |
| Msa1451470 | MtrunA17_Chr2g0316241 | 25.670 | 261 | 175 | 9 | 391 | 641 | 74 | 325 | 5.05e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451470 | AT3G06440.1 | 53.715 | 646 | 250 | 8 | 1 | 642 | 19 | 619 | 0.0 | 686 |
| Msa1451470 | AT3G06440.2 | 51.008 | 645 | 240 | 9 | 1 | 642 | 19 | 590 | 0.0 | 633 |
| Msa1451470 | AT1G26810.2 | 47.005 | 651 | 324 | 7 | 1 | 641 | 1 | 640 | 0.0 | 582 |
| Msa1451470 | AT1G26810.1 | 47.005 | 651 | 324 | 7 | 1 | 641 | 1 | 640 | 0.0 | 582 |
| Msa1451470 | AT5G62620.1 | 38.372 | 516 | 280 | 10 | 157 | 641 | 170 | 678 | 9.90e-113 | 353 |
| Msa1451470 | AT1G74800.1 | 37.024 | 551 | 316 | 13 | 113 | 641 | 128 | 669 | 2.65e-110 | 347 |
| Msa1451470 | AT1G27120.2 | 36.502 | 526 | 301 | 11 | 139 | 641 | 124 | 639 | 2.14e-107 | 338 |
| Msa1451470 | AT1G27120.1 | 36.742 | 528 | 297 | 11 | 139 | 641 | 155 | 670 | 3.62e-107 | 338 |
| Msa1451470 | AT4G21060.2 | 35.110 | 544 | 315 | 13 | 128 | 641 | 146 | 681 | 5.80e-102 | 325 |
| Msa1451470 | AT4G21060.1 | 35.110 | 544 | 315 | 13 | 128 | 641 | 203 | 738 | 2.25e-101 | 325 |
| Msa1451470 | AT5G62620.2 | 36.080 | 449 | 249 | 10 | 157 | 574 | 170 | 611 | 3.12e-81 | 269 |
| Msa1451470 | AT2G26100.1 | 26.641 | 259 | 175 | 6 | 391 | 641 | 107 | 358 | 1.68e-16 | 82.0 |
| Msa1451470 | AT3G14960.1 | 27.969 | 261 | 173 | 7 | 389 | 641 | 79 | 332 | 3.26e-16 | 80.9 |
| Msa1451470 | AT1G53290.1 | 26.899 | 316 | 195 | 11 | 352 | 641 | 29 | 334 | 1.90e-15 | 78.6 |
| Msa1451470 | AT2G26100.2 | 26.106 | 226 | 155 | 3 | 391 | 610 | 107 | 326 | 2.11e-15 | 78.6 |
Find 136 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAATTGCAATTTGCATTT+TGG | 0.096764 | tig0033426:+20199 | Msa1451470:CDS |
| AATACATGGACTAGTGATTT+TGG | 0.137369 | tig0033426:+18811 | Msa1451470:CDS |
| TTTCTACTGTACAGTCTTAA+AGG | 0.188302 | tig0033426:+18145 | Msa1451470:CDS |
| GAAACGGTTATATTTATTTC+AGG | 0.207606 | tig0033426:+18060 | Msa1451470:intron |
| AATCAACAAAAGGCATTAAT+TGG | 0.212309 | tig0033426:-20154 | Msa1451470:intergenic |
| TTTAACTCCTTGAGCTATTT+CGG | 0.214747 | tig0033426:-18449 | Msa1451470:intergenic |
| TTTACTCAAACATTTGAATT+AGG | 0.219468 | tig0033426:+17238 | Msa1451470:five_prime_UTR |
| TGCAAGATAATTGGAGGATT+TGG | 0.247383 | tig0033426:-18733 | Msa1451470:intergenic |
| AAAGGATTAGCCTCAGAAAA+AGG | 0.248836 | tig0033426:-19371 | Msa1451470:intergenic |
| GCATATGGATTGAACAATTT+AGG | 0.250872 | tig0033426:+21491 | Msa1451470:CDS |
| TTAACTCCTTGAGCTATTTC+GGG | 0.251324 | tig0033426:-18448 | Msa1451470:intergenic |
| TTTAAGTCTGTTATCAGTTC+TGG | 0.251836 | tig0033426:+19602 | Msa1451470:CDS |
| ATAGAGTTAATCTTGAATTA+TGG | 0.276791 | tig0033426:+20105 | Msa1451470:CDS |
| ATAGCAAAATTCGTTGTCTT+TGG | 0.279953 | tig0033426:+20733 | Msa1451470:CDS |
| GATATCTACTCACAACATTC+TGG | 0.289356 | tig0033426:-21652 | Msa1451470:intergenic |
| CATTATAATGTGAGTCTTCC+TGG | 0.290225 | tig0033426:+18754 | Msa1451470:CDS |
| ACATTATAATGCAAGATAAT+TGG | 0.291182 | tig0033426:-18742 | Msa1451470:intergenic |
| GGATTTCATATGACTGTAAA+TGG | 0.300607 | tig0033426:+19422 | Msa1451470:CDS |
| CTTCAGATGGCTTCCCTTTG+AGG | 0.308752 | tig0033426:-20457 | Msa1451470:intergenic |
| TACCTAAAGCCATGATAAAA+AGG | 0.316882 | tig0033426:-18114 | Msa1451470:intergenic |
| TAGGGATAGCTGGAGCCTTC+AGG | 0.328328 | tig0033426:-19677 | Msa1451470:intergenic |
| CAATGAATGTTGTACTTGTT+TGG | 0.333423 | tig0033426:+18386 | Msa1451470:CDS |
| TGTCATTGTCTTGCCAAGTT+TGG | 0.340771 | tig0033426:-18581 | Msa1451470:intergenic |
| CAAGGATGGTGTTATGCCTT+TGG | 0.341498 | tig0033426:+21605 | Msa1451470:CDS |
| TCGGCGCTCAAAGTTATTTC+CGG | 0.341737 | tig0033426:-19736 | Msa1451470:intergenic |
| CTCCAGCTATCCCTAGAAAA+AGG | 0.342285 | tig0033426:+19685 | Msa1451470:CDS |
| CTTCTAAGTCATCTCCTGAT+AGG | 0.344437 | tig0033426:+20501 | Msa1451470:CDS |
| TAATAACTCTGTTGATTATG+AGG | 0.354468 | tig0033426:+21694 | Msa1451470:three_prime_UTR |
| TCACTGCCACATTGTGGGTT+GGG | 0.361190 | tig0033426:+19393 | Msa1451470:CDS |
| ATATCATTATCTTCCGTAAC+AGG | 0.362656 | tig0033426:-19636 | Msa1451470:intergenic |
| TTGCTGTCCTTATCCCTATC+AGG | 0.368376 | tig0033426:-20515 | Msa1451470:intergenic |
| ACTGGATCTCCCTTGTGGTT+TGG | 0.371403 | tig0033426:+18618 | Msa1451470:CDS |
| TTTCGATGCAGATCAGAAAA+TGG | 0.377851 | tig0033426:+18279 | Msa1451470:CDS |
| CCAAGTTTGGTCACAGAGAA+TGG | 0.379786 | tig0033426:-18568 | Msa1451470:intergenic |
| CCATTCTCTGTGACCAAACT+TGG | 0.381533 | tig0033426:+18568 | Msa1451470:CDS |
| TCCTTTCACTGCCACATTGT+GGG | 0.385409 | tig0033426:+19388 | Msa1451470:CDS |
| GGCTAAAGGTTTACCTGTTA+CGG | 0.394794 | tig0033426:+19623 | Msa1451470:CDS |
| TTCACTGCCACATTGTGGGT+TGG | 0.395199 | tig0033426:+19392 | Msa1451470:CDS |
| AAGGATGGTGTTATGCCTTT+GGG | 0.400443 | tig0033426:+21606 | Msa1451470:CDS |
| CTGTTATCAGTTCTGGCTAA+AGG | 0.403419 | tig0033426:+19609 | Msa1451470:CDS |
| CTTTCTGAGGAAATATTAGA+AGG | 0.408472 | tig0033426:-19326 | Msa1451470:intergenic |
| CCAGCTCCAGCTCCAGCTCC+AGG | 0.411454 | tig0033426:-17144 | Msa1451470:intergenic |
| ACACTGATCGGCATCCCTAA+TGG | 0.427912 | tig0033426:+18658 | Msa1451470:CDS |
| TTCACACCTGGAGCTGGAGC+TGG | 0.428081 | tig0033426:+17138 | Msa1451470:five_prime_UTR |
| AAGATGTTGCCATGGGCATA+TGG | 0.431266 | tig0033426:+21476 | Msa1451470:CDS |
| TAGAATCATTTGGTGGTGAA+TGG | 0.435315 | tig0033426:-18222 | Msa1451470:intergenic |
| CCACCATGGGCACATGGTCC+TGG | 0.440633 | tig0033426:+20691 | Msa1451470:CDS |
| AGATGGCTTCCCTTTGAGGC+TGG | 0.441178 | tig0033426:-20453 | Msa1451470:intergenic |
| CAAAGGCATAACACCATCCT+TGG | 0.450169 | tig0033426:-21604 | Msa1451470:intergenic |
| TTAAAGAGGCTTCTGTAGCT+TGG | 0.451470 | tig0033426:+18467 | Msa1451470:CDS |
| GAATGGCTCTGAGGAGGTCC+TGG | 0.454334 | tig0033426:+19757 | Msa1451470:CDS |
| TGGACGGAAGCTCAAGCATA+TGG | 0.456280 | tig0033426:+20125 | Msa1451470:CDS |
| TTGAAAATGAAGAAGTGGTA+TGG | 0.458715 | tig0033426:+18088 | Msa1451470:exon |
| CAGATGATGATGCTTTCATA+AGG | 0.464275 | tig0033426:+20414 | Msa1451470:CDS |
| GTCATCTCCTGATAGGGATA+AGG | 0.468655 | tig0033426:+20508 | Msa1451470:CDS |
| CTTTCTGCAGTTTCTCCCAA+AGG | 0.470786 | tig0033426:-21621 | Msa1451470:intergenic |
| CAATATGAGGCTGTACGTTC+TGG | 0.471244 | tig0033426:+19783 | Msa1451470:CDS |
| AAACGGTTATATTTATTTCA+GGG | 0.474514 | tig0033426:+18061 | Msa1451470:five_prime_UTR |
| CCTGGAGCTGGAGCTGGAGC+TGG | 0.475482 | tig0033426:+17144 | Msa1451470:five_prime_UTR |
| ATCCTTTCACTGCCACATTG+TGG | 0.477470 | tig0033426:+19387 | Msa1451470:CDS |
| GTCTATCTTACTAATCTTCG+AGG | 0.478025 | tig0033426:-18524 | Msa1451470:intergenic |
| ATTCGTTGTCTTTGGCCACC+AGG | 0.479400 | tig0033426:+20741 | Msa1451470:CDS |
| TTATGAATATGGTGGTGAAT+AGG | 0.483953 | tig0033426:+17106 | None:intergenic |
| GTCAGCACGATTAAAGTAGC+AGG | 0.484951 | tig0033426:+19576 | Msa1451470:CDS |
| AGCTTTCAGATTGAGCTAGC+TGG | 0.485254 | tig0033426:+18691 | Msa1451470:CDS |
| ATTGAACAATTTAGGAATGG+TGG | 0.485712 | tig0033426:+21499 | Msa1451470:CDS |
| AAACTATAATAATCAACAAA+AGG | 0.494113 | tig0033426:-20164 | Msa1451470:intergenic |
| TTTCTGATCTGCATCGAAAG+AGG | 0.495941 | tig0033426:-18275 | Msa1451470:intergenic |
| GAGTGTTTCACACCTGGAGC+TGG | 0.501124 | tig0033426:+17132 | Msa1451470:five_prime_UTR |
| TTCTAAGTCATCTCCTGATA+GGG | 0.503233 | tig0033426:+20502 | Msa1451470:CDS |
| TTGATCGGAGTATTCTCTAC+CGG | 0.508883 | tig0033426:+19717 | Msa1451470:CDS |
| AGGACCTCCTCAGAGCCATT+CGG | 0.510477 | tig0033426:-19755 | Msa1451470:intergenic |
| CTCTTTCAAATTCACATATG+CGG | 0.510976 | tig0033426:+17201 | Msa1451470:five_prime_UTR |
| TCATGCTAAATATACCTTTG+CGG | 0.511523 | tig0033426:-18879 | Msa1451470:intergenic |
| CGTATATTGTTCAAAATACA+TGG | 0.517784 | tig0033426:+18797 | Msa1451470:CDS |
| ACATTGTGGGTTGGGTCAGA+AGG | 0.519182 | tig0033426:+19401 | Msa1451470:CDS |
| TCGCGAGATATGACATATCC+AGG | 0.523922 | tig0033426:-20709 | Msa1451470:intergenic |
| GAAGTGCTTTCCAGCCTCAA+AGG | 0.527978 | tig0033426:+20443 | Msa1451470:CDS |
| ATGTTAGCAGAACCATGAGC+AGG | 0.528160 | tig0033426:-18856 | Msa1451470:intergenic |
| ACCCACAATGTGGCAGTGAA+AGG | 0.532066 | tig0033426:-19389 | Msa1451470:intergenic |
| GATTCTTCTATTACACTGAT+CGG | 0.533821 | tig0033426:+18646 | Msa1451470:CDS |
| TAAATTAGAAGATGTTGCCA+TGG | 0.541216 | tig0033426:+21468 | Msa1451470:CDS |
| GTTTATTCAGCACAACATCA+AGG | 0.542401 | tig0033426:+17260 | Msa1451470:five_prime_UTR |
| TGGCACCAAAACCAACAAAA+CGG | 0.544787 | tig0033426:+18299 | Msa1451470:CDS |
| AAATAACTTTGAGCGCCGAA+TGG | 0.546477 | tig0033426:+19740 | Msa1451470:CDS |
| AAGTGCTTTCCAGCCTCAAA+GGG | 0.551248 | tig0033426:+20444 | Msa1451470:CDS |
| AGTTCTATGTGCACTTTCTG+AGG | 0.553560 | tig0033426:-19339 | Msa1451470:intergenic |
| AAATTAGAAGATGTTGCCAT+GGG | 0.554916 | tig0033426:+21469 | Msa1451470:CDS |
| CCACATTTGATACATGTCAC+AGG | 0.555339 | tig0033426:+18322 | Msa1451470:CDS |
| CCATCTGAAGGCCTCTTGTA+CGG | 0.556208 | tig0033426:+20470 | Msa1451470:CDS |
| TCTTTAATAGAATCATTTGG+TGG | 0.557042 | tig0033426:-18229 | Msa1451470:intergenic |
| TGGATTGAACAATTTAGGAA+TGG | 0.558371 | tig0033426:+21496 | Msa1451470:CDS |
| TTATAATGCAAGATAATTGG+AGG | 0.560890 | tig0033426:-18739 | Msa1451470:intergenic |
| GTTTATTGAAAATGAAGAAG+TGG | 0.561747 | tig0033426:+18083 | Msa1451470:exon |
| GAGGAAAGATGCCCTGCTCA+TGG | 0.566659 | tig0033426:+18844 | Msa1451470:CDS |
| CTCAAAGGGAAGCCATCTGA+AGG | 0.569898 | tig0033426:+20458 | Msa1451470:CDS |
| CACATGATACGTACCCACCA+TGG | 0.571594 | tig0033426:+20677 | Msa1451470:CDS |
| TTCATATGACTGTAAATGGA+AGG | 0.574417 | tig0033426:+19426 | Msa1451470:CDS |
| ATTTACGTTTGTTGCTGTCG+AGG | 0.575180 | tig0033426:+18413 | Msa1451470:CDS |
| AATAGCTCAAGGAGTTAAAG+AGG | 0.578574 | tig0033426:+18453 | Msa1451470:CDS |
| AGGTATGAGTGTTTCACACC+TGG | 0.578684 | tig0033426:+17126 | Msa1451470:five_prime_UTR |
| CGATGCAGAATCTTGAACCA+TGG | 0.589458 | tig0033426:+19550 | Msa1451470:intron |
| ACATGATACGTACCCACCAT+GGG | 0.589834 | tig0033426:+20678 | Msa1451470:CDS |
| CAGGACCATGTGCCCATGGT+GGG | 0.590057 | tig0033426:-20690 | Msa1451470:intergenic |
| TATCCAGGACCATGTGCCCA+TGG | 0.590642 | tig0033426:-20694 | Msa1451470:intergenic |
| TACAGCCTCATATTGCATCC+AGG | 0.592681 | tig0033426:-19775 | Msa1451470:intergenic |
| TTCATTATGAGAATGATGAG+AGG | 0.592883 | tig0033426:+21530 | Msa1451470:CDS |
| ATCACACTGGATCTCCCTTG+TGG | 0.593261 | tig0033426:+18613 | Msa1451470:CDS |
| TTGCGCATTATCAAAATCCA+AGG | 0.595140 | tig0033426:+21587 | Msa1451470:CDS |
| ACGTACCCACCATGGGCACA+TGG | 0.599828 | tig0033426:+20685 | Msa1451470:CDS |
| GAGCAGTACTTCAGAAACAA+AGG | 0.602118 | tig0033426:-17174 | Msa1451470:intergenic |
| CACATTTGATACATGTCACA+GGG | 0.607371 | tig0033426:+18323 | Msa1451470:CDS |
| TTAATCGTGCTGACTAACCA+TGG | 0.610947 | tig0033426:-19567 | Msa1451470:intergenic |
| AAGATATTAGACCGTACAAG+AGG | 0.616932 | tig0033426:-20481 | Msa1451470:intergenic |
| AAAATGAAGAAGTGGTATGG+AGG | 0.619161 | tig0033426:+18091 | Msa1451470:exon |
| AGTTAATCTTGAATTATGGA+CGG | 0.620195 | tig0033426:+20109 | Msa1451470:CDS |
| AGCTGGACAAGAGCTAGAAG+AGG | 0.621403 | tig0033426:+18708 | Msa1451470:CDS |
| CCAGGACCATGTGCCCATGG+TGG | 0.623499 | tig0033426:-20691 | Msa1451470:intergenic |
| CCGTACAAGAGGCCTTCAGA+TGG | 0.626770 | tig0033426:-20470 | Msa1451470:intergenic |
| GAATCTACGACCAAACCACA+AGG | 0.628470 | tig0033426:-18628 | Msa1451470:intergenic |
| TTGTTCAATCCATATGCCCA+TGG | 0.632568 | tig0033426:-21485 | Msa1451470:intergenic |
| AGCGCCGAATGGCTCTGAGG+AGG | 0.634744 | tig0033426:+19751 | Msa1451470:CDS |
| GCATTATCAAAATCCAAGGA+TGG | 0.638592 | tig0033426:+21591 | Msa1451470:CDS |
| TCGAAGATTAGTAAGATAGA+CGG | 0.641292 | tig0033426:+18526 | Msa1451470:CDS |
| GACAGATAGTGAAATCACAC+TGG | 0.646133 | tig0033426:+18600 | Msa1451470:CDS |
| GGTTCTGCTAACATCCGCAA+AGG | 0.648279 | tig0033426:+18865 | Msa1451470:CDS |
| TGTTAGCAGAACCATGAGCA+GGG | 0.651531 | tig0033426:-18855 | Msa1451470:intergenic |
| GAGGTCCTGGATGCAATATG+AGG | 0.652896 | tig0033426:+19770 | Msa1451470:CDS |
| TTGAGCGCCGAATGGCTCTG+AGG | 0.661301 | tig0033426:+19748 | Msa1451470:CDS |
| GCTTTGCCCGAAATAGCTCA+AGG | 0.661971 | tig0033426:+18442 | Msa1451470:CDS |
| ATAGGGATAAGGACAGCAAG+TGG | 0.679605 | tig0033426:+20519 | Msa1451470:CDS |
| TTCTGACCCAACCCACAATG+TGG | 0.693365 | tig0033426:-19399 | Msa1451470:intergenic |
| TGTTGATGTTGAGAACCTGA+AGG | 0.697040 | tig0033426:+19662 | Msa1451470:CDS |
| CCTGTGACATGTATCAAATG+TGG | 0.710894 | tig0033426:-18322 | Msa1451470:intergenic |
| CAAGTGGTACATCAGTGACG+AGG | 0.722140 | tig0033426:+20535 | Msa1451470:CDS |
| AATCTACGACCAAACCACAA+GGG | 0.735183 | tig0033426:-18627 | Msa1451460:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTTAAGAAAATAGA+AGG | + | tig0033426:17907-17926 | Msa1451470:intron | 10.0% |
| !! | AATAATTTAAGAAAATAGAA+GGG | + | tig0033426:17908-17927 | Msa1451470:intron | 10.0% |
| !! | TAAAAATTAAATAATTGGAA+TGG | + | tig0033426:19502-19521 | Msa1451470:intron | 10.0% |
| !!! | TTATTTTCTATCTATTTTTC+TGG | + | tig0033426:17427-17446 | Msa1451470:intron | 15.0% |
| !!! | CATATTACATTTTCAATATT+TGG | + | tig0033426:17477-17496 | Msa1451470:intron | 15.0% |
| !!! | TTTTCTTTAATAGAATCATT+TGG | - | tig0033426:18235-18254 | Msa1451470:intergenic | 15.0% |
| !! | ACTGCTAAAAATTAAATAAT+TGG | + | tig0033426:19497-19516 | Msa1451470:intron | 15.0% |
| !!! | ATTTTTTTAGCACAATAAAA+TGG | + | tig0033426:19902-19921 | Msa1451470:intron | 15.0% |
| !! | AAACTATAATAATCAACAAA+AGG | - | tig0033426:20167-20186 | Msa1451470:intergenic | 15.0% |
| !!! | CATTATCTTATTGTTATTTT+AGG | + | tig0033426:20648-20667 | Msa1451470:intron | 15.0% |
| !! | TTAATGTCATCTTAAAATTT+GGG | - | tig0033426:21026-21045 | Msa1451470:intergenic | 15.0% |
| !! | TTTAATGTCATCTTAAAATT+TGG | - | tig0033426:21027-21046 | Msa1451470:intergenic | 15.0% |
| !! | TTTACTCAAACATTTGAATT+AGG | + | tig0033426:17238-17257 | Msa1451470:five_prime_UTR | 20.0% |
| !! | TTATTGAATCTTAATTGACA+TGG | - | tig0033426:17382-17401 | Msa1451470:intergenic | 20.0% |
| !!! | ATTACATTTTCAATATTTGG+AGG | + | tig0033426:17480-17499 | Msa1451470:intron | 20.0% |
| !!! | ATAATGCCTTATTATGATAT+AGG | + | tig0033426:17656-17675 | Msa1451470:intron | 20.0% |
| !! | AATGAATAAAAAAGTCATCT+AGG | - | tig0033426:18007-18026 | Msa1451470:intergenic | 20.0% |
| !! | AAACGGTTATATTTATTTCA+GGG | + | tig0033426:18061-18080 | Msa1451470:five_prime_UTR | 20.0% |
| !! | ACATTATAATGCAAGATAAT+TGG | - | tig0033426:18745-18764 | Msa1451470:intergenic | 20.0% |
| !!! | CATGTATTTTGAACAATATA+CGG | - | tig0033426:18799-18818 | Msa1451470:intergenic | 20.0% |
| !!! | AAAAATCACATATTTCTAGT+TGG | - | tig0033426:19009-19028 | Msa1451470:intergenic | 20.0% |
| !! | TCGACAAAAATATAAAATGT+TGG | - | tig0033426:19533-19552 | Msa1451470:intergenic | 20.0% |
| !! | ATAGAGTTAATCTTGAATTA+TGG | + | tig0033426:20105-20124 | Msa1451470:CDS | 20.0% |
| !!! | TTTTCATGATGTATTTAGAA+GGG | - | tig0033426:20394-20413 | Msa1451470:intergenic | 20.0% |
| !! | GAAAAATAAAAATTTATGGG+AGG | - | tig0033426:20621-20640 | Msa1451470:intergenic | 20.0% |
| !!! | TCTTATTGTTATTTTAGGAA+TGG | + | tig0033426:20653-20672 | Msa1451470:intron | 20.0% |
| !! | TTATAACAAAACTTCATGAT+GGG | - | tig0033426:20801-20820 | Msa1451470:intergenic | 20.0% |
| !! | ATTATAACAAAACTTCATGA+TGG | - | tig0033426:20802-20821 | Msa1451470:intergenic | 20.0% |
| !!! | GAAGTTTTGTTATAATCTTT+CGG | + | tig0033426:20806-20825 | Msa1451470:intron | 20.0% |
| !! | TATTTCAAGGATATATCTTA+AGG | + | tig0033426:20830-20849 | Msa1451470:intron | 20.0% |
| !! | ATTTCAAGGATATATCTTAA+GGG | + | tig0033426:20831-20850 | Msa1451470:intron | 20.0% |
| !! | TCTGAAAATGAACTTATAAA+TGG | + | tig0033426:21164-21183 | Msa1451470:intron | 20.0% |
| !! | CTGAAAATGAACTTATAAAT+GGG | + | tig0033426:21165-21184 | Msa1451470:intron | 20.0% |
| !! | TGAAAATGAACTTATAAATG+GGG | + | tig0033426:21166-21185 | Msa1451470:intron | 20.0% |
| !! | ATTTGATTCCTCTTAAAATT+TGG | - | tig0033426:21237-21256 | Msa1451470:intergenic | 20.0% |
| !!! | TTAATATCACAAATTTTCCT+GGG | + | tig0033426:21262-21281 | Msa1451470:intron | 20.0% |
| !! | TAAAAGAATTGGAACTTAAA+TGG | + | tig0033426:21297-21316 | Msa1451470:intron | 20.0% |
| !! | ATAGAATAAAAATGCAATGA+TGG | - | tig0033426:21372-21391 | Msa1451470:intergenic | 20.0% |
| !! | AAATAAAATTCAGCAGTTAA+TGG | - | tig0033426:21427-21446 | Msa1451470:intergenic | 20.0% |
| !! | ATTCAAACTTTCTTGTTTCT+TGG | + | tig0033426:17351-17370 | Msa1451470:intron | 25.0% |
| !! | ATTTTCAATATTTGGAGGTT+GGG | + | tig0033426:17485-17504 | Msa1451470:intron | 25.0% |
| !! | AAAAGTATGTGAAGTAGAAT+AGG | + | tig0033426:17624-17643 | Msa1451470:intron | 25.0% |
| ! | TTGCAAAATGCAACAAATAA+TGG | - | tig0033426:17727-17746 | Msa1451470:intergenic | 25.0% |
| !!! | ATTTGTTGCATTTTGCAAAA+AGG | + | tig0033426:17729-17748 | Msa1451470:intron | 25.0% |
| !! | TTGCAAAAAGGCATAAAATT+AGG | + | tig0033426:17741-17760 | Msa1451470:intron | 25.0% |
| !! | TGCAAAAAGGCATAAAATTA+GGG | + | tig0033426:17742-17761 | Msa1451470:intron | 25.0% |
| ! | ATTTAACATGATCTAATGTG+TGG | - | tig0033426:17789-17808 | Msa1451470:intergenic | 25.0% |
| ! | GAAACGGTTATATTTATTTC+AGG | + | tig0033426:18060-18079 | Msa1451470:intron | 25.0% |
| ! | GTTTATTGAAAATGAAGAAG+TGG | + | tig0033426:18083-18102 | Msa1451470:exon | 25.0% |
| ! | TCTTTAATAGAATCATTTGG+TGG | - | tig0033426:18232-18251 | Msa1451470:intergenic | 25.0% |
| ! | TTATAATGCAAGATAATTGG+AGG | - | tig0033426:18742-18761 | Msa1451470:intergenic | 25.0% |
| ! | CGTATATTGTTCAAAATACA+TGG | + | tig0033426:18797-18816 | Msa1451470:CDS | 25.0% |
| !!! | ATGCAATTATAATGGACAAA+AGG | + | tig0033426:18978-18997 | Msa1451470:intron | 25.0% |
| !! | AATATGTGATTTTTATGTCG+AGG | + | tig0033426:19015-19034 | Msa1451470:intron | 25.0% |
| !! | ATGAAACATCTTTTGCATAT+AGG | + | tig0033426:19450-19469 | Msa1451470:CDS | 25.0% |
| !! | TGAAACATCTTTTGCATATA+GGG | + | tig0033426:19451-19470 | Msa1451470:CDS | 25.0% |
| ! | TTGCTATAATATTGAATGCA+TGG | - | tig0033426:20003-20022 | Msa1451470:intergenic | 25.0% |
| ! | ACAAGAGAGGAATAATTTAA+AGG | - | tig0033426:20035-20054 | Msa1451470:intergenic | 25.0% |
| ! | AGTTAATCTTGAATTATGGA+CGG | + | tig0033426:20109-20128 | Msa1451470:CDS | 25.0% |
| !!! | AATCAACAAAAGGCATTAAT+TGG | - | tig0033426:20157-20176 | Msa1451470:intergenic | 25.0% |
| !! | ACAATTGCAATTTGCATTTT+GGG | + | tig0033426:20200-20219 | Msa1451470:CDS | 25.0% |
| !! | GTTTATTTGTTAGTTAATGC+TGG | + | tig0033426:20271-20290 | Msa1451470:intron | 25.0% |
| !!! | AAGCAGTGATTTTTATTTAG+TGG | + | tig0033426:20299-20318 | Msa1451470:intron | 25.0% |
| !! | GTTTTCATGATGTATTTAGA+AGG | - | tig0033426:20395-20414 | Msa1451470:intergenic | 25.0% |
| ! | ATAATCTTTCGGATATTTCA+AGG | + | tig0033426:20817-20836 | Msa1451470:intron | 25.0% |
| ! | ATTAAGAGTCTCAAATTGAT+TGG | + | tig0033426:21132-21151 | Msa1451470:intron | 25.0% |
| ! | GAAAATGAACTTATAAATGG+GGG | + | tig0033426:21167-21186 | Msa1451470:intron | 25.0% |
| ! | ATTCCTCTTAAAATTTGGAT+CGG | - | tig0033426:21232-21251 | Msa1451470:intergenic | 25.0% |
| !! | CTTAATATCACAAATTTTCC+TGG | + | tig0033426:21261-21280 | Msa1451470:intron | 25.0% |
| ! | ACCACTTATGTTAAAAGAAT+TGG | + | tig0033426:21286-21305 | Msa1451470:intron | 25.0% |
| !! | TCCAATTCTTTTAACATAAG+TGG | - | tig0033426:21290-21309 | Msa1451470:intergenic | 25.0% |
| ! | CTTAAATATGTATTCGCAAA+AGG | + | tig0033426:21338-21357 | Msa1451470:intron | 25.0% |
| !! | ATTCTATTCATCTTGCTATA+TGG | + | tig0033426:21385-21404 | Msa1451470:intron | 25.0% |
| !! | TAATAACTCTGTTGATTATG+AGG | + | tig0033426:21694-21713 | Msa1451470:three_prime_UTR | 25.0% |
| CTCTTTCAAATTCACATATG+CGG | + | tig0033426:17201-17220 | Msa1451470:five_prime_UTR | 30.0% | |
| ! | CATTTTCAATATTTGGAGGT+TGG | + | tig0033426:17484-17503 | Msa1451470:intron | 30.0% |
| ATCCTAGATTCAATCAAACT+CGG | + | tig0033426:17547-17566 | Msa1451470:intron | 30.0% | |
| AGGTTTGAATATCCTAGAAA+TGG | + | tig0033426:17692-17711 | Msa1451470:intron | 30.0% | |
| CAAAATGCAACAAATAATGG+AGG | - | tig0033426:17724-17743 | Msa1451470:intergenic | 30.0% | |
| AAATTCTTTGTCTGCAGAAA+CGG | + | tig0033426:18044-18063 | Msa1451470:intron | 30.0% | |
| TTGAAAATGAAGAAGTGGTA+TGG | + | tig0033426:18088-18107 | Msa1451470:exon | 30.0% | |
| TACCTAAAGCCATGATAAAA+AGG | - | tig0033426:18117-18136 | Msa1451470:intergenic | 30.0% | |
| TTTCTACTGTACAGTCTTAA+AGG | + | tig0033426:18145-18164 | Msa1451470:CDS | 30.0% | |
| CAATGAATGTTGTACTTGTT+TGG | + | tig0033426:18386-18405 | Msa1451470:CDS | 30.0% | |
| TTTAACTCCTTGAGCTATTT+CGG | - | tig0033426:18452-18471 | Msa1451470:intergenic | 30.0% | |
| TCGAAGATTAGTAAGATAGA+CGG | + | tig0033426:18526-18545 | Msa1451470:CDS | 30.0% | |
| !!! | ATGGACAGTTTTGATTTTCT+GGG | - | tig0033426:18552-18571 | Msa1451470:intergenic | 30.0% |
| !!! | AATGGACAGTTTTGATTTTC+TGG | - | tig0033426:18553-18572 | Msa1451470:intergenic | 30.0% |
| GATTCTTCTATTACACTGAT+CGG | + | tig0033426:18646-18665 | Msa1451470:CDS | 30.0% | |
| !!! | AATACATGGACTAGTGATTT+TGG | + | tig0033426:18811-18830 | Msa1451470:CDS | 30.0% |
| !!! | ATACATGGACTAGTGATTTT+GGG | + | tig0033426:18812-18831 | Msa1451470:CDS | 30.0% |
| TCATGCTAAATATACCTTTG+CGG | - | tig0033426:18882-18901 | Msa1451470:intergenic | 30.0% | |
| TCGTTTGCATGCAATTATAA+TGG | + | tig0033426:18970-18989 | Msa1451470:intron | 30.0% | |
| TTTATAATTCGAACCTAGCT+TGG | + | tig0033426:19053-19072 | Msa1451470:intron | 30.0% | |
| AAACTGCACTCAAGAATAAA+AGG | - | tig0033426:19165-19184 | Msa1451470:intergenic | 30.0% | |
| !!! | TTGAGTGCAGTTTTTTATGA+GGG | + | tig0033426:19172-19191 | Msa1451470:intron | 30.0% |
| ! | CTTTCTGAGGAAATATTAGA+AGG | - | tig0033426:19329-19348 | Msa1451470:intergenic | 30.0% |
| GGATTTCATATGACTGTAAA+TGG | + | tig0033426:19422-19441 | Msa1451470:CDS | 30.0% | |
| TTCATATGACTGTAAATGGA+AGG | + | tig0033426:19426-19445 | Msa1451470:CDS | 30.0% | |
| TTTAAGTCTGTTATCAGTTC+TGG | + | tig0033426:19602-19621 | Msa1451470:CDS | 30.0% | |
| ATATCATTATCTTCCGTAAC+AGG | - | tig0033426:19639-19658 | Msa1451470:intergenic | 30.0% | |
| ! | ACAAAACAAGCCTTTTTCTA+GGG | - | tig0033426:19698-19717 | Msa1451470:intergenic | 30.0% |
| ! | AACAAAACAAGCCTTTTTCT+AGG | - | tig0033426:19699-19718 | Msa1451470:intergenic | 30.0% |
| !!! | AAAAGGCTTGTTTTGTTGAT+CGG | + | tig0033426:19702-19721 | Msa1451470:CDS | 30.0% |
| TAGCACAATAAAATGGCAAT+AGG | + | tig0033426:19909-19928 | Msa1451470:intron | 30.0% | |
| ! | AGAACAGTTTTTAACAAGAG+AGG | - | tig0033426:20048-20067 | Msa1451470:intergenic | 30.0% |
| ! | GACAATTGCAATTTGCATTT+TGG | + | tig0033426:20199-20218 | Msa1451470:CDS | 30.0% |
| ! | CAATTGCAATTTGCATTTTG+GGG | + | tig0033426:20201-20220 | Msa1451470:CDS | 30.0% |
| ! | AATTGCAATTTGCATTTTGG+GGG | + | tig0033426:20202-20221 | Msa1451470:CDS | 30.0% |
| ATAGCAAAATTCGTTGTCTT+TGG | + | tig0033426:20733-20752 | Msa1451470:CDS | 30.0% | |
| !! | TTACTTTGAGTTTTCTTTCC+TGG | - | tig0033426:20762-20781 | Msa1451470:intergenic | 30.0% |
| CAACAATCAAGTAAAGTATG+CGG | - | tig0033426:20887-20906 | Msa1451470:intergenic | 30.0% | |
| GCATACTTTACTTGATTGTT+GGG | + | tig0033426:20886-20905 | Msa1451470:intron | 30.0% | |
| CACAAAATGAGTTCATAAGT+GGG | + | tig0033426:20950-20969 | Msa1451470:intron | 30.0% | |
| ACAAAATGAGTTCATAAGTG+GGG | + | tig0033426:20951-20970 | Msa1451470:intron | 30.0% | |
| TAACTCAACCATTACAAATC+TGG | - | tig0033426:20996-21015 | Msa1451470:intergenic | 30.0% | |
| AGATTTGTAATGGTTGAGTT+AGG | + | tig0033426:20995-21014 | Msa1451470:intron | 30.0% | |
| ! | GTCATCTTAAAATTTGGGTT+GGG | - | tig0033426:21021-21040 | Msa1451470:intergenic | 30.0% |
| TGTCATCTTAAAATTTGGGT+TGG | - | tig0033426:21022-21041 | Msa1451470:intergenic | 30.0% | |
| AAAACCTAACAAAAACCCAT+TGG | + | tig0033426:21044-21063 | Msa1451470:intron | 30.0% | |
| AAACCTAACAAAAACCCATT+GGG | + | tig0033426:21045-21064 | Msa1451470:intron | 30.0% | |
| TTCCTCTTAAAATTTGGATC+GGG | - | tig0033426:21231-21250 | Msa1451470:intergenic | 30.0% | |
| AAAATTCAGCAGTTAATGGA+AGG | - | tig0033426:21423-21442 | Msa1451470:intergenic | 30.0% | |
| TAAATTAGAAGATGTTGCCA+TGG | + | tig0033426:21468-21487 | Msa1451470:CDS | 30.0% | |
| AAATTAGAAGATGTTGCCAT+GGG | + | tig0033426:21469-21488 | Msa1451470:CDS | 30.0% | |
| ! | GCATATGGATTGAACAATTT+AGG | + | tig0033426:21491-21510 | Msa1451470:CDS | 30.0% |
| TGGATTGAACAATTTAGGAA+TGG | + | tig0033426:21496-21515 | Msa1451470:CDS | 30.0% | |
| ATTGAACAATTTAGGAATGG+TGG | + | tig0033426:21499-21518 | Msa1451470:CDS | 30.0% | |
| TTCATTATGAGAATGATGAG+AGG | + | tig0033426:21530-21549 | Msa1451470:CDS | 30.0% | |
| GTTTATTCAGCACAACATCA+AGG | + | tig0033426:17260-17279 | Msa1451470:five_prime_UTR | 35.0% | |
| !! | AGCTCAACTGATTTGAGTTA+AGG | + | tig0033426:17509-17528 | Msa1451470:intron | 35.0% |
| GGGACTCCTATATCATAATA+AGG | - | tig0033426:17665-17684 | Msa1451470:intergenic | 35.0% | |
| AGGATATTCAAACCTCACAA+CGG | - | tig0033426:17687-17706 | Msa1451470:intergenic | 35.0% | |
| ! | ATGCAACAAATAATGGAGGA+AGG | - | tig0033426:17720-17739 | Msa1451470:intergenic | 35.0% |
| AGAACGAAAGCTAATTGACA+AGG | - | tig0033426:17815-17834 | Msa1451470:intergenic | 35.0% | |
| GTAACAACATGTGTTAGTGT+TGG | + | tig0033426:17938-17957 | Msa1451470:intron | 35.0% | |
| AAAATGAAGAAGTGGTATGG+AGG | + | tig0033426:18091-18110 | Msa1451470:exon | 35.0% | |
| !! | TAGAATCATTTGGTGGTGAA+TGG | - | tig0033426:18225-18244 | Msa1451470:intergenic | 35.0% |
| TTTCGATGCAGATCAGAAAA+TGG | + | tig0033426:18279-18298 | Msa1451470:CDS | 35.0% | |
| CACATTTGATACATGTCACA+GGG | + | tig0033426:18323-18342 | Msa1451470:CDS | 35.0% | |
| ! | TTAACTCCTTGAGCTATTTC+GGG | - | tig0033426:18451-18470 | Msa1451470:intergenic | 35.0% |
| AATAGCTCAAGGAGTTAAAG+AGG | + | tig0033426:18453-18472 | Msa1451470:CDS | 35.0% | |
| GTCTATCTTACTAATCTTCG+AGG | - | tig0033426:18527-18546 | Msa1451470:intergenic | 35.0% | |
| ! | AGCTACTGTTTTGTCCATTA+GGG | - | tig0033426:18675-18694 | Msa1451470:intergenic | 35.0% |
| ! | AAGCTACTGTTTTGTCCATT+AGG | - | tig0033426:18676-18695 | Msa1451470:intergenic | 35.0% |
| TGCAAGATAATTGGAGGATT+TGG | - | tig0033426:18736-18755 | Msa1451470:intergenic | 35.0% | |
| CATTATAATGTGAGTCTTCC+TGG | + | tig0033426:18754-18773 | Msa1451470:CDS | 35.0% | |
| AACAAGACATAATCCAAGCT+AGG | - | tig0033426:19069-19088 | Msa1451470:intergenic | 35.0% | |
| TACCATCTTCATTCCTTAGT+AGG | + | tig0033426:19093-19112 | Msa1451470:intron | 35.0% | |
| !!! | CTTGAGTGCAGTTTTTTATG+AGG | + | tig0033426:19171-19190 | Msa1451470:intron | 35.0% |
| ! | TTTATGAGGGAAGCTTTTAG+TGG | + | tig0033426:19185-19204 | Msa1451470:intron | 35.0% |
| CATCAACTACATCATAGAGT+TGG | - | tig0033426:19226-19245 | Msa1451470:intergenic | 35.0% | |
| ! | TGCTAATTTCCCTTTTTCTG+AGG | + | tig0033426:19361-19380 | Msa1451470:CDS | 35.0% |
| !! | AAGGATTAGCCTCAGAAAAA+GGG | - | tig0033426:19373-19392 | Msa1451470:intergenic | 35.0% |
| !! | AAAGGATTAGCCTCAGAAAA+AGG | - | tig0033426:19374-19393 | Msa1451470:intergenic | 35.0% |
| ! | AACATCTTTTGCATATAGGG+AGG | + | tig0033426:19454-19473 | Msa1451470:CDS | 35.0% |
| ! | CATATAGGGAGGTATGATAT+AGG | + | tig0033426:19465-19484 | Msa1451470:intron | 35.0% |
| ! | GTTGCTGTCAGATTTTTCAT+TGG | + | tig0033426:19810-19829 | Msa1451470:CDS | 35.0% |
| ! | CAGATGATGATGCTTTCATA+AGG | + | tig0033426:20414-20433 | Msa1451470:CDS | 35.0% |
| AAGATATTAGACCGTACAAG+AGG | - | tig0033426:20484-20503 | Msa1451470:intergenic | 35.0% | |
| TTCTAAGTCATCTCCTGATA+GGG | + | tig0033426:20502-20521 | Msa1451470:CDS | 35.0% | |
| ! | ACAAAACTTCATGATGGGAA+AGG | - | tig0033426:20796-20815 | Msa1451470:intergenic | 35.0% |
| !! | CTCGTATTAGAAGTGTCAAA+AGG | + | tig0033426:20858-20877 | Msa1451470:intron | 35.0% |
| CGCATACTTTACTTGATTGT+TGG | + | tig0033426:20885-20904 | Msa1451470:intron | 35.0% | |
| TTTACTTGATTGTTGGGACT+GGG | + | tig0033426:20892-20911 | Msa1451470:intron | 35.0% | |
| GGACTTATCTCATCAAATGT+GGG | - | tig0033426:20931-20950 | Msa1451470:intergenic | 35.0% | |
| TGGACTTATCTCATCAAATG+TGG | - | tig0033426:20932-20951 | Msa1451470:intergenic | 35.0% | |
| ! | CCACTTATGAACTCATTTTG+TGG | - | tig0033426:20952-20971 | Msa1451470:intergenic | 35.0% |
| CCACAAAATGAGTTCATAAG+TGG | + | tig0033426:20949-20968 | Msa1451470:intron | 35.0% | |
| CAAAATGAGTTCATAAGTGG+GGG | + | tig0033426:20952-20971 | Msa1451470:intron | 35.0% | |
| ! | CATTACAAATCTGGCTTGTA+AGG | - | tig0033426:20987-21006 | Msa1451470:intergenic | 35.0% |
| CTTACAAGCCAGATTTGTAA+TGG | + | tig0033426:20985-21004 | Msa1451470:intron | 35.0% | |
| CTCAAATTGATTGGATGAGA+AGG | + | tig0033426:21141-21160 | Msa1451470:intron | 35.0% | |
| TCAATCCTTACAAAACCGTA+AGG | - | tig0033426:21202-21221 | Msa1451470:intergenic | 35.0% | |
| !! | GGTTTTGTAAGGATTGAGTT+AGG | + | tig0033426:21205-21224 | Msa1451470:intron | 35.0% |
| ! | TTTTAACATAAGTGGTTCCC+AGG | - | tig0033426:21282-21301 | Msa1451470:intergenic | 35.0% |
| TTGCGCATTATCAAAATCCA+AGG | + | tig0033426:21587-21606 | Msa1451470:CDS | 35.0% | |
| GCATTATCAAAATCCAAGGA+TGG | + | tig0033426:21591-21610 | Msa1451470:CDS | 35.0% | |
| GATATCTACTCACAACATTC+TGG | - | tig0033426:21655-21674 | Msa1451470:intergenic | 35.0% | |
| GAGCAGTACTTCAGAAACAA+AGG | - | tig0033426:17177-17196 | Msa1451470:intergenic | 40.0% | |
| TGAGTTAAGGAATACGAAGC+TGG | + | tig0033426:17522-17541 | Msa1451470:intron | 40.0% | |
| GTCCGAGTTTGATTGAATCT+AGG | - | tig0033426:17552-17571 | Msa1451470:intergenic | 40.0% | |
| GATATTCAAACCTCACAACG+GGG | - | tig0033426:17685-17704 | Msa1451470:intergenic | 40.0% | |
| GGATATTCAAACCTCACAAC+GGG | - | tig0033426:17686-17705 | Msa1451470:intergenic | 40.0% | |
| ! | CTTGAGATTGAAAGCGTGTT+CGG | - | tig0033426:17967-17986 | Msa1451470:intergenic | 40.0% |
| ACGCTTTCAATCTCAAGTGT+CGG | + | tig0033426:17970-17989 | Msa1451470:intron | 40.0% | |
| ! | GTATGGAGGCCTTTTTATCA+TGG | + | tig0033426:18105-18124 | Msa1451470:CDS | 40.0% |
| ! | GGCCTTTTTATCATGGCTTT+AGG | + | tig0033426:18112-18131 | Msa1451470:CDS | 40.0% |
| !! | TGTTTTGCTGACTGCTTTTG+TGG | - | tig0033426:18178-18197 | Msa1451470:intergenic | 40.0% |
| TTTCTGATCTGCATCGAAAG+AGG | - | tig0033426:18278-18297 | Msa1451470:intergenic | 40.0% | |
| TGGCACCAAAACCAACAAAA+CGG | + | tig0033426:18299-18318 | Msa1451470:CDS | 40.0% | |
| !! | ATCAAATGTGGCCGTTTTGT+TGG | - | tig0033426:18313-18332 | Msa1451470:intergenic | 40.0% |
| CCTGTGACATGTATCAAATG+TGG | - | tig0033426:18325-18344 | Msa1451470:intergenic | 40.0% | |
| CCACATTTGATACATGTCAC+AGG | + | tig0033426:18322-18341 | Msa1451470:CDS | 40.0% | |
| ! | ATTTACGTTTGTTGCTGTCG+AGG | + | tig0033426:18413-18432 | Msa1451470:CDS | 40.0% |
| TTAAAGAGGCTTCTGTAGCT+TGG | + | tig0033426:18467-18486 | Msa1451470:CDS | 40.0% | |
| TGTCATTGTCTTGCCAAGTT+TGG | - | tig0033426:18584-18603 | Msa1451470:intergenic | 40.0% | |
| GACAGATAGTGAAATCACAC+TGG | + | tig0033426:18600-18619 | Msa1451470:CDS | 40.0% | |
| AATCTACGACCAAACCACAA+GGG | - | tig0033426:18630-18649 | Msa1451470:intergenic | 40.0% | |
| ! | ATCTCTGTCATGTTTTCTCC+AGG | - | tig0033426:18775-18794 | Msa1451470:intergenic | 40.0% |
| !!! | ATGGACTAGTGATTTTGGGT+GGG | + | tig0033426:18816-18835 | Msa1451470:CDS | 40.0% |
| AGCCTACTAAGGAATGAAGA+TGG | - | tig0033426:19098-19117 | Msa1451470:intergenic | 40.0% | |
| GTAGTTACTACAGCCTACTA+AGG | - | tig0033426:19109-19128 | Msa1451470:intergenic | 40.0% | |
| AACTACATTAGCAACACCTC+AGG | + | tig0033426:19123-19142 | Msa1451470:intron | 40.0% | |
| AAGCAAGATAGCATAACCTG+AGG | - | tig0033426:19142-19161 | Msa1451470:intergenic | 40.0% | |
| AGTTCTATGTGCACTTTCTG+AGG | - | tig0033426:19342-19361 | Msa1451470:intergenic | 40.0% | |
| !! | TTAATCGTGCTGACTAACCA+TGG | - | tig0033426:19570-19589 | Msa1451470:intergenic | 40.0% |
| ! | CTGTTATCAGTTCTGGCTAA+AGG | + | tig0033426:19609-19628 | Msa1451470:CDS | 40.0% |
| GGCTAAAGGTTTACCTGTTA+CGG | + | tig0033426:19623-19642 | Msa1451470:CDS | 40.0% | |
| TGTTGATGTTGAGAACCTGA+AGG | + | tig0033426:19662-19681 | Msa1451470:CDS | 40.0% | |
| ! | TTGATCGGAGTATTCTCTAC+CGG | + | tig0033426:19717-19736 | Msa1451470:CDS | 40.0% |
| !! | AAATAACTTTGAGCGCCGAA+TGG | + | tig0033426:19740-19759 | Msa1451470:CDS | 40.0% |
| GGGTTAAGACTGTTAGAGTA+TGG | - | tig0033426:19955-19974 | Msa1451470:intergenic | 40.0% | |
| TTAGTCCACACTACAGCATT+TGG | - | tig0033426:19979-19998 | Msa1451470:intergenic | 40.0% | |
| CTTCTAAGTCATCTCCTGAT+AGG | + | tig0033426:20501-20520 | Msa1451470:CDS | 40.0% | |
| !! | CTTTGAGTTTTCTTTCCTGG+TGG | - | tig0033426:20759-20778 | Msa1451470:intergenic | 40.0% |
| ! | AAACTTCATGATGGGAAAGG+AGG | - | tig0033426:20793-20812 | Msa1451470:intergenic | 40.0% |
| CTTTACTTGATTGTTGGGAC+TGG | + | tig0033426:20891-20910 | Msa1451470:intron | 40.0% | |
| CACTCACTATTGGAACACTT+GGG | + | tig0033426:21069-21088 | Msa1451470:intron | 40.0% | |
| !! | TCTCACCTTACGGTTTTGTA+AGG | + | tig0033426:21194-21213 | Msa1451470:intron | 40.0% |
| TTGTTCAATCCATATGCCCA+TGG | - | tig0033426:21488-21507 | Msa1451470:intergenic | 40.0% | |
| ! | GATGAGAGGTTTTACAATGC+TGG | + | tig0033426:21544-21563 | Msa1451470:CDS | 40.0% |
| !! | AAGGATGGTGTTATGCCTTT+GGG | + | tig0033426:21606-21625 | Msa1451470:CDS | 40.0% |
| AGGTATGAGTGTTTCACACC+TGG | + | tig0033426:17126-17145 | Msa1451470:five_prime_UTR | 45.0% | |
| CGCTTTCAATCTCAAGTGTC+GGG | + | tig0033426:17971-17990 | Msa1451470:intron | 45.0% | |
| ! | GCTTTCAATCTCAAGTGTCG+GGG | + | tig0033426:17972-17991 | Msa1451470:intron | 45.0% |
| !!! | TGTGGCCGTTTTGTTGGTTT+TGG | - | tig0033426:18307-18326 | Msa1451470:intergenic | 45.0% |
| CCAAGTTTGGTCACAGAGAA+TGG | - | tig0033426:18571-18590 | Msa1451470:intergenic | 45.0% | |
| CCATTCTCTGTGACCAAACT+TGG | + | tig0033426:18568-18587 | Msa1451470:CDS | 45.0% | |
| GAATCTACGACCAAACCACA+AGG | - | tig0033426:18631-18650 | Msa1451470:intergenic | 45.0% | |
| AGCTTTCAGATTGAGCTAGC+TGG | + | tig0033426:18691-18710 | Msa1451470:CDS | 45.0% | |
| !!! | CATGGACTAGTGATTTTGGG+TGG | + | tig0033426:18815-18834 | Msa1451470:CDS | 45.0% |
| !!! | TGGACTAGTGATTTTGGGTG+GGG | + | tig0033426:18817-18836 | Msa1451470:CDS | 45.0% |
| TGTTAGCAGAACCATGAGCA+GGG | - | tig0033426:18858-18877 | Msa1451470:intergenic | 45.0% | |
| ATGTTAGCAGAACCATGAGC+AGG | - | tig0033426:18859-18878 | Msa1451470:intergenic | 45.0% | |
| ATCCTTTCACTGCCACATTG+TGG | + | tig0033426:19387-19406 | Msa1451470:CDS | 45.0% | |
| TCCTTTCACTGCCACATTGT+GGG | + | tig0033426:19388-19407 | Msa1451470:CDS | 45.0% | |
| CGATGCAGAATCTTGAACCA+TGG | + | tig0033426:19550-19569 | Msa1451470:intron | 45.0% | |
| GTCAGCACGATTAAAGTAGC+AGG | + | tig0033426:19576-19595 | Msa1451470:CDS | 45.0% | |
| CTCCAGCTATCCCTAGAAAA+AGG | + | tig0033426:19685-19704 | Msa1451470:CDS | 45.0% | |
| !! | AGCCTTTTTCTAGGGATAGC+TGG | - | tig0033426:19690-19709 | Msa1451470:intergenic | 45.0% |
| ! | TCGGCGCTCAAAGTTATTTC+CGG | - | tig0033426:19739-19758 | Msa1451470:intergenic | 45.0% |
| TACAGCCTCATATTGCATCC+AGG | - | tig0033426:19778-19797 | Msa1451470:intergenic | 45.0% | |
| CAATATGAGGCTGTACGTTC+TGG | + | tig0033426:19783-19802 | Msa1451470:CDS | 45.0% | |
| TCCACACTACAGCATTTGGT+GGG | - | tig0033426:19975-19994 | Msa1451470:intergenic | 45.0% | |
| AAGTGCTTTCCAGCCTCAAA+GGG | + | tig0033426:20444-20463 | Msa1451470:CDS | 45.0% | |
| GTCATCTCCTGATAGGGATA+AGG | + | tig0033426:20508-20527 | Msa1451470:CDS | 45.0% | |
| TTGCTGTCCTTATCCCTATC+AGG | - | tig0033426:20518-20537 | Msa1451470:intergenic | 45.0% | |
| ATAGGGATAAGGACAGCAAG+TGG | + | tig0033426:20519-20538 | Msa1451470:CDS | 45.0% | |
| ACATGATACGTACCCACCAT+GGG | + | tig0033426:20678-20697 | Msa1451470:CDS | 45.0% | |
| TCGCGAGATATGACATATCC+AGG | - | tig0033426:20712-20731 | Msa1451470:intergenic | 45.0% | |
| CTCATCAAATGTGGGACTCT+TGG | - | tig0033426:20923-20942 | Msa1451470:intergenic | 45.0% | |
| !! | TGGCCCAATGGGTTTTTGTT+AGG | - | tig0033426:21051-21070 | Msa1451470:intergenic | 45.0% |
| CCAAGTGTTCCAATAGTGAG+TGG | - | tig0033426:21071-21090 | Msa1451470:intergenic | 45.0% | |
| CCACTCACTATTGGAACACT+TGG | + | tig0033426:21068-21087 | Msa1451470:intron | 45.0% | |
| ACACTCCATATGTCCAGTCT+TGG | + | tig0033426:21094-21113 | Msa1451470:intron | 45.0% | |
| CACTCCATATGTCCAGTCTT+GGG | + | tig0033426:21095-21114 | Msa1451470:intron | 45.0% | |
| ATATGTCATACGCCCAAGAC+TGG | - | tig0033426:21110-21129 | Msa1451470:intergenic | 45.0% | |
| ! | GGCCCGATCCAAATTTTAAG+AGG | + | tig0033426:21226-21245 | Msa1451470:intron | 45.0% |
| AAGATGTTGCCATGGGCATA+TGG | + | tig0033426:21476-21495 | Msa1451470:CDS | 45.0% | |
| ! | CAAAGGCATAACACCATCCT+TGG | - | tig0033426:21607-21626 | Msa1451470:intergenic | 45.0% |
| !! | CAAGGATGGTGTTATGCCTT+TGG | + | tig0033426:21605-21624 | Msa1451470:CDS | 45.0% |
| CTTTCTGCAGTTTCTCCCAA+AGG | - | tig0033426:21624-21643 | Msa1451470:intergenic | 45.0% | |
| !! | TAAAAAATAAATAACAAATA+AGG | - | tig0033426:20353-20372 | Msa1451470:intergenic | 5.0% |
| !! | ATAGAAAAATAAAAATTTAT+GGG | - | tig0033426:20624-20643 | Msa1451470:intergenic | 5.0% |
| !! | AATAGAAAAATAAAAATTTA+TGG | - | tig0033426:20625-20644 | Msa1451470:intergenic | 5.0% |
| ATATAGGAGTCCCCGTTGTG+AGG | + | tig0033426:17672-17691 | Msa1451470:intron | 50.0% | |
| TGGAGGAAGGAGCCATTTCT+AGG | - | tig0033426:17707-17726 | Msa1451470:intergenic | 50.0% | |
| GCTTTGCCCGAAATAGCTCA+AGG | + | tig0033426:18442-18461 | Msa1451470:CDS | 50.0% | |
| ATCACACTGGATCTCCCTTG+TGG | + | tig0033426:18613-18632 | Msa1451470:CDS | 50.0% | |
| ACTGGATCTCCCTTGTGGTT+TGG | + | tig0033426:18618-18637 | Msa1451470:CDS | 50.0% | |
| ACACTGATCGGCATCCCTAA+TGG | + | tig0033426:18658-18677 | Msa1451470:CDS | 50.0% | |
| AGCTGGACAAGAGCTAGAAG+AGG | + | tig0033426:18708-18727 | Msa1451470:CDS | 50.0% | |
| !! | GGACTAGTGATTTTGGGTGG+GGG | + | tig0033426:18818-18837 | Msa1451470:CDS | 50.0% |
| !! | TGATTTTGGGTGGGGGAAAG+AGG | + | tig0033426:18825-18844 | Msa1451470:CDS | 50.0% |
| GGTTCTGCTAACATCCGCAA+AGG | + | tig0033426:18865-18884 | Msa1451470:CDS | 50.0% | |
| ACCCACAATGTGGCAGTGAA+AGG | - | tig0033426:19392-19411 | Msa1451470:intergenic | 50.0% | |
| TTCACTGCCACATTGTGGGT+TGG | + | tig0033426:19392-19411 | Msa1451470:CDS | 50.0% | |
| TCACTGCCACATTGTGGGTT+GGG | + | tig0033426:19393-19412 | Msa1451470:CDS | 50.0% | |
| TTCTGACCCAACCCACAATG+TGG | - | tig0033426:19402-19421 | Msa1451470:intergenic | 50.0% | |
| !! | ACATTGTGGGTTGGGTCAGA+AGG | + | tig0033426:19401-19420 | Msa1451470:CDS | 50.0% |
| GAGGTCCTGGATGCAATATG+AGG | + | tig0033426:19770-19789 | Msa1451470:CDS | 50.0% | |
| ACCCACCAAATGCTGTAGTG+TGG | + | tig0033426:19971-19990 | Msa1451470:intron | 50.0% | |
| GTCCACACTACAGCATTTGG+TGG | - | tig0033426:19976-19995 | Msa1451470:intergenic | 50.0% | |
| TGGACGGAAGCTCAAGCATA+TGG | + | tig0033426:20125-20144 | Msa1451470:CDS | 50.0% | |
| ! | GAAGTGCTTTCCAGCCTCAA+AGG | + | tig0033426:20443-20462 | Msa1451470:CDS | 50.0% |
| CTTCAGATGGCTTCCCTTTG+AGG | - | tig0033426:20460-20479 | Msa1451470:intergenic | 50.0% | |
| CTCAAAGGGAAGCCATCTGA+AGG | + | tig0033426:20458-20477 | Msa1451470:CDS | 50.0% | |
| CCATCTGAAGGCCTCTTGTA+CGG | + | tig0033426:20470-20489 | Msa1451470:CDS | 50.0% | |
| CAAGTGGTACATCAGTGACG+AGG | + | tig0033426:20535-20554 | Msa1451470:CDS | 50.0% | |
| ACACACACACACACACACAG+AGG | - | tig0033426:20567-20586 | Msa1451470:intergenic | 50.0% | |
| CACATGATACGTACCCACCA+TGG | + | tig0033426:20677-20696 | Msa1451470:CDS | 50.0% | |
| ATTCGTTGTCTTTGGCCACC+AGG | + | tig0033426:20741-20760 | Msa1451470:CDS | 50.0% | |
| CCAATAGTGAGTGGCCCAAT+GGG | - | tig0033426:21062-21081 | Msa1451470:intergenic | 50.0% | |
| TCCAATAGTGAGTGGCCCAA+TGG | - | tig0033426:21063-21082 | Msa1451470:intergenic | 50.0% | |
| TACGCCCAAGACTGGACATA+TGG | - | tig0033426:21102-21121 | Msa1451470:intergenic | 50.0% | |
| GAGTGTTTCACACCTGGAGC+TGG | + | tig0033426:17132-17151 | Msa1451470:five_prime_UTR | 55.0% | |
| GAGGAAAGATGCCCTGCTCA+TGG | + | tig0033426:18844-18863 | Msa1451470:CDS | 55.0% | |
| TAGGGATAGCTGGAGCCTTC+AGG | - | tig0033426:19680-19699 | Msa1451470:intergenic | 55.0% | |
| AGGACCTCCTCAGAGCCATT+CGG | - | tig0033426:19758-19777 | Msa1451470:intergenic | 55.0% | |
| !! | AGATGGCTTCCCTTTGAGGC+TGG | - | tig0033426:20456-20475 | Msa1451470:intergenic | 55.0% |
| CCGTACAAGAGGCCTTCAGA+TGG | - | tig0033426:20473-20492 | Msa1451470:intergenic | 55.0% | |
| TATCCAGGACCATGTGCCCA+TGG | - | tig0033426:20697-20716 | Msa1451470:intergenic | 55.0% | |
| CCCATTGGGCCACTCACTAT+TGG | + | tig0033426:21059-21078 | Msa1451470:intron | 55.0% | |
| TGGGGGCAGTTCTCACCTTA+CGG | + | tig0033426:21184-21203 | Msa1451470:intron | 55.0% | |
| TTCACACCTGGAGCTGGAGC+TGG | + | tig0033426:17138-17157 | Msa1451470:five_prime_UTR | 60.0% | |
| !! | TTGAGCGCCGAATGGCTCTG+AGG | + | tig0033426:19748-19767 | Msa1451470:CDS | 60.0% |
| !! | GAATGGCTCTGAGGAGGTCC+TGG | + | tig0033426:19757-19776 | Msa1451470:CDS | 60.0% |
| ACGTACCCACCATGGGCACA+TGG | + | tig0033426:20685-20704 | Msa1451470:CDS | 60.0% | |
| CAGGACCATGTGCCCATGGT+GGG | - | tig0033426:20693-20712 | Msa1451470:intergenic | 60.0% | |
| !! | AGCGCCGAATGGCTCTGAGG+AGG | + | tig0033426:19751-19770 | Msa1451470:CDS | 65.0% |
| CCAGGACCATGTGCCCATGG+TGG | - | tig0033426:20694-20713 | Msa1451470:intergenic | 65.0% | |
| CCACCATGGGCACATGGTCC+TGG | + | tig0033426:20691-20710 | Msa1451470:CDS | 65.0% | |
| CCAGCTCCAGCTCCAGCTCC+AGG | - | tig0033426:17147-17166 | Msa1451470:intergenic | 70.0% | |
| CCTGGAGCTGGAGCTGGAGC+TGG | + | tig0033426:17144-17163 | Msa1451470:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033426 | gene | 17121 | 21808 | 17121 | ID=Msa1451470;Name=Msa1451470 |
| tig0033426 | mRNA | 17121 | 21808 | 17121 | ID=Msa1451470-mRNA-1;Parent=Msa1451470;Name=Msa1451470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=194|1|1|1|0.85|0.75|8|139|642 |
| tig0033426 | exon | 17121 | 17281 | 17121 | ID=Msa1451470-mRNA-1:exon:18059;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 18061 | 18886 | 18061 | ID=Msa1451470-mRNA-1:exon:18060;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 19240 | 19475 | 19240 | ID=Msa1451470-mRNA-1:exon:18061;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 19558 | 19836 | 19558 | ID=Msa1451470-mRNA-1:exon:18062;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 20095 | 20223 | 20095 | ID=Msa1451470-mRNA-1:exon:18063;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 20380 | 20556 | 20380 | ID=Msa1451470-mRNA-1:exon:18064;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 20670 | 20777 | 20670 | ID=Msa1451470-mRNA-1:exon:18065;Parent=Msa1451470-mRNA-1 |
| tig0033426 | exon | 21463 | 21808 | 21463 | ID=Msa1451470-mRNA-1:exon:18066;Parent=Msa1451470-mRNA-1 |
| tig0033426 | five_prime_UTR | 17121 | 17281 | 17121 | ID=Msa1451470-mRNA-1:five_prime_utr;Parent=Msa1451470-mRNA-1 |
| tig0033426 | five_prime_UTR | 18061 | 18093 | 18061 | ID=Msa1451470-mRNA-1:five_prime_utr;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 18094 | 18886 | 18094 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 19240 | 19475 | 19240 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 19558 | 19836 | 19558 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 20095 | 20223 | 20095 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 20380 | 20556 | 20380 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 20670 | 20777 | 20670 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | CDS | 21463 | 21669 | 21463 | ID=Msa1451470-mRNA-1:cds;Parent=Msa1451470-mRNA-1 |
| tig0033426 | three_prime_UTR | 21670 | 21808 | 21670 | ID=Msa1451470-mRNA-1:three_prime_utr;Parent=Msa1451470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
