Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336030 | XP_003625987.2 | 92.872 | 491 | 3 | 1 | 1 | 459 | 1 | 491 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336030 | sp|Q6GQT9|NOMO1_MOUSE | 33.198 | 491 | 259 | 13 | 19 | 459 | 21 | 492 | 4.68e-75 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336030 | G7KTM5 | 92.872 | 491 | 3 | 1 | 1 | 459 | 1 | 491 | 0.0 | 920 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa1336030 | 0.888426 | 5.967211e-73 | -8.615850e-47 |
| Msa0047000 | Msa1336030 | 0.801794 | 7.609870e-49 | -8.615850e-47 |
| Msa0116270 | Msa1336030 | 0.803976 | 2.696123e-49 | -8.615850e-47 |
| Msa0705500 | Msa1336030 | 0.800722 | 1.261068e-48 | -8.615850e-47 |
| Msa0816900 | Msa1336030 | 0.807403 | 5.142785e-50 | -8.615850e-47 |
| Msa0140880 | Msa1336030 | 0.812871 | 3.408427e-51 | -8.615850e-47 |
| Msa1255890 | Msa1336030 | 0.803381 | 3.581847e-49 | -8.615850e-47 |
| Msa1267040 | Msa1336030 | 0.854426 | 1.241022e-61 | -8.615850e-47 |
| Msa1267170 | Msa1336030 | 0.847946 | 8.382274e-60 | -8.615850e-47 |
| Msa1306310 | Msa1336030 | 0.828943 | 6.787956e-55 | -8.615850e-47 |
| Msa1336030 | Msa1353550 | 0.821323 | 4.292781e-53 | -8.615850e-47 |
| Msa1336030 | Msa1377810 | 0.896327 | 4.103887e-76 | -8.615850e-47 |
| Msa1336030 | Msa1401510 | 0.882638 | 8.811226e-71 | -8.615850e-47 |
| Msa1336030 | Msa1439750 | 0.810597 | 1.065240e-50 | -8.615850e-47 |
| Msa1336030 | Msa1440900 | 0.817246 | 3.641663e-52 | -8.615850e-47 |
| Msa1336030 | Msa1457470 | 0.823715 | 1.193024e-53 | -8.615850e-47 |
| Msa1336030 | Msa1464370 | 0.822638 | 2.128049e-53 | -8.615850e-47 |
| Msa1336030 | Msa1465150 | 0.815793 | 7.705479e-52 | -8.615850e-47 |
| Msa0369420 | Msa1336030 | 0.807991 | 3.857017e-50 | -8.615850e-47 |
| Msa0438670 | Msa1336030 | 0.805547 | 1.266188e-49 | -8.615850e-47 |
| Msa0463530 | Msa1336030 | 0.843630 | 1.245368e-58 | -8.615850e-47 |
| Msa0467310 | Msa1336030 | 0.824531 | 7.675565e-54 | -8.615850e-47 |
| Msa1027780 | Msa1336030 | 0.831825 | 1.340336e-55 | -8.615850e-47 |
| Msa1055200 | Msa1336030 | 0.808176 | 3.522346e-50 | -8.615850e-47 |
| Msa0268110 | Msa1336030 | 0.890716 | 7.662636e-74 | -8.615850e-47 |
| Msa1111060 | Msa1336030 | 0.804201 | 2.420156e-49 | -8.615850e-47 |
| Msa1219830 | Msa1336030 | 0.841708 | 4.034337e-58 | -8.615850e-47 |
| Msa0573110 | Msa1336030 | 0.822684 | 2.076206e-53 | -8.615850e-47 |
| Msa0586450 | Msa1336030 | 0.828930 | 6.834388e-55 | -8.615850e-47 |
| Msa0969780 | Msa1336030 | 0.801263 | 9.779653e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336030 | MtrunA17_Chr7g0270141 | 92.872 | 491 | 3 | 1 | 1 | 459 | 1 | 491 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336030 | AT3G62360.2 | 66.461 | 486 | 129 | 2 | 8 | 459 | 11 | 496 | 0.0 | 670 |
| Msa1336030 | AT3G62360.1 | 62.597 | 516 | 129 | 3 | 8 | 459 | 11 | 526 | 0.0 | 655 |
Find 113 sgRNAs with CRISPR-Local
Find 493 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGTAATTAAAGTTAA+TGG | 0.170602 | tig0000790:-7107 | Msa1336030:CDS |
| GAGCTAGACAATTGGGTTTA+TGG | 0.171435 | tig0000790:+8214 | None:intergenic |
| TGTTGATGCTTAACATTAAC+TGG | 0.181984 | tig0000790:+4121 | None:intergenic |
| GCATTACAAGTTCAAGAAAT+TGG | 0.201593 | tig0000790:-1504 | Msa1336030:CDS |
| GTTATTCTTGTAGGTGGAAT+TGG | 0.221904 | tig0000790:-5188 | Msa1336030:intron |
| TTTGGCATCCGTTTGTTTCC+TGG | 0.227971 | tig0000790:+7779 | None:intergenic |
| ATGCTTCTTCCTTGCTTCTA+TGG | 0.234325 | tig0000790:+1523 | None:intergenic |
| GCTTCTGCTGATTCCATCTA+TGG | 0.268002 | tig0000790:-8015 | Msa1336030:CDS |
| TTCCAGGGAAACCCTATATT+AGG | 0.283328 | tig0000790:-4766 | Msa1336030:intron |
| CAAGAAATTGGAGAATTATA+TGG | 0.286191 | tig0000790:-1492 | Msa1336030:intron |
| AGCTAGACAATTGGGTTTAT+GGG | 0.295434 | tig0000790:+8215 | None:intergenic |
| TGTTAACTGTTACAGGTAAC+TGG | 0.308644 | tig0000790:-2436 | Msa1336030:intron |
| GAAACAAACGGATGCCAAAT+TGG | 0.314612 | tig0000790:-7775 | Msa1336030:CDS |
| TGGAATTGGGCTTTGGAAAT+GGG | 0.315488 | tig0000790:-5174 | Msa1336030:CDS |
| CTCTGTAGGTTCTCTATATC+TGG | 0.316967 | tig0000790:-6694 | Msa1336030:intron |
| TTTAATGTCTAGGTTCTTCC+TGG | 0.320833 | tig0000790:-396 | Msa1336030:intron |
| GTGGAATTGGGCTTTGGAAA+TGG | 0.325253 | tig0000790:-5175 | Msa1336030:CDS |
| AATATATGGACTCCTAATAT+AGG | 0.326208 | tig0000790:+4754 | None:intergenic |
| GACATGTGAATAATCCAATT+TGG | 0.330019 | tig0000790:+7761 | None:intergenic |
| TGAACTAGTGCCCTACTATA+AGG | 0.331374 | tig0000790:-4182 | Msa1336030:CDS |
| CCTCTGAATACAAGAATATA+TGG | 0.332768 | tig0000790:+4740 | None:intergenic |
| GATATGAAAGTTGAAGTTAA+AGG | 0.347337 | tig0000790:-5357 | Msa1336030:CDS |
| CATGAGTCCAGCAGCATTAT+CGG | 0.352438 | tig0000790:+341 | None:intergenic |
| ATCGCAGGCGAGTTCATCTT+TGG | 0.358289 | tig0000790:-7808 | Msa1336030:intron |
| CGACATTTCCGATCTGAGAT+TGG | 0.362445 | tig0000790:+8092 | None:intergenic |
| AAGAAACAAACAGATGGAAA+TGG | 0.362628 | tig0000790:-1099 | Msa1336030:CDS |
| TTATTCTTGTAGGTGGAATT+GGG | 0.367599 | tig0000790:-5187 | Msa1336030:intron |
| GTTGAACTATTGTCTCCTTC+TGG | 0.372002 | tig0000790:-6604 | Msa1336030:CDS |
| CAAATCAAACCAGATCTTAG+AGG | 0.375784 | tig0000790:+8129 | None:intergenic |
| ACATTAACTGGGACACTAGA+TGG | 0.394404 | tig0000790:+4133 | None:intergenic |
| TCTATATCTGGTAGAGTTGT+GGG | 0.404597 | tig0000790:-6682 | Msa1336030:CDS |
| TTGTTTACAAATGTAATTCC+AGG | 0.405641 | tig0000790:-6538 | Msa1336030:intron |
| AAATGGGAATTTCTGCTTTG+AGG | 0.407460 | tig0000790:-1082 | Msa1336030:intron |
| GAATCCACCGCAGCCATAGA+TGG | 0.409957 | tig0000790:+8002 | None:intergenic |
| AAGAAATAACAAACCTTCTC+AGG | 0.410403 | tig0000790:+7062 | None:intergenic |
| TGTTTGCAAGGTTCTGCTAA+TGG | 0.419182 | tig0000790:-4700 | Msa1336030:CDS |
| TTGTAGGTGGAATTGGGCTT+TGG | 0.422980 | tig0000790:-5181 | Msa1336030:intron |
| ATATATGGACTCCTAATATA+GGG | 0.425298 | tig0000790:+4755 | None:intergenic |
| TGGCTGCGGTGGATTCGTTC+AGG | 0.426968 | tig0000790:-7995 | Msa1336030:intron |
| CTCTATATCTGGTAGAGTTG+TGG | 0.428279 | tig0000790:-6683 | Msa1336030:CDS |
| TATTAGGTGGCTTTGACTCA+TGG | 0.446176 | tig0000790:-1144 | Msa1336030:intron |
| GACATTTCCGATCTGAGATT+GGG | 0.447835 | tig0000790:+8093 | None:intergenic |
| GAACTAGTGCCCTACTATAA+GGG | 0.463860 | tig0000790:-4181 | Msa1336030:CDS |
| TTGTACGAGCCTCTAAGATC+TGG | 0.465913 | tig0000790:-8138 | Msa1336030:five_prime_UTR |
| GGTAGAGTTGTGGGAGCTGC+AGG | 0.467417 | tig0000790:-6673 | Msa1336030:CDS |
| AGAAACAAACAGATGGAAAT+GGG | 0.467802 | tig0000790:-1098 | Msa1336030:CDS |
| ATGGACCTGATGGGTGGTCA+TGG | 0.468727 | tig0000790:-7088 | Msa1336030:CDS |
| GAGAGTGAGAGCTAGACAAT+TGG | 0.475534 | tig0000790:+8206 | None:intergenic |
| AGGTTATTACAAGCTTGATC+AGG | 0.485867 | tig0000790:-2314 | Msa1336030:intron |
| GGAATTGGGCTTTGGAAATG+GGG | 0.493886 | tig0000790:-5173 | Msa1336030:CDS |
| GGAATAAAATAGTACCCGTT+AGG | 0.496115 | tig0000790:+7304 | None:intergenic |
| AGAGTGAGAGCTAGACAATT+GGG | 0.496547 | tig0000790:+8207 | None:intergenic |
| GCTTCAAACCGTGGATGGAT+TGG | 0.500914 | tig0000790:-7350 | Msa1336030:CDS |
| ATGAGTCCAGCAGCATTATC+GGG | 0.503144 | tig0000790:+342 | None:intergenic |
| CAGTGGGTCTGTTGTTGCAC+AGG | 0.503400 | tig0000790:-5113 | Msa1336030:intron |
| TCCATTAACTTTAATTACAA+AGG | 0.504858 | tig0000790:+7106 | None:intergenic |
| ATCGCAACATCAATATAAGA+TGG | 0.506969 | tig0000790:+312 | None:intergenic |
| AACCGTGGATGGATTGGTAA+AGG | 0.509918 | tig0000790:-7344 | Msa1336030:CDS |
| GAACACAATGTGCTCCTAAC+GGG | 0.513649 | tig0000790:-7318 | Msa1336030:CDS |
| GGATCCCATGACCACCCATC+AGG | 0.514368 | tig0000790:+7083 | None:intergenic |
| GCTACTCCCGATAATGCTGC+TGG | 0.517169 | tig0000790:-348 | Msa1336030:CDS |
| GGTGTCAAGATCATAGTTGA+TGG | 0.525320 | tig0000790:-2364 | Msa1336030:CDS |
| GTCCCTGGGTATAGTATCAG+TGG | 0.533507 | tig0000790:-5130 | Msa1336030:CDS |
| GTTCATCTTTGGTGAAGTCC+AGG | 0.533922 | tig0000790:-7797 | Msa1336030:CDS |
| GTTGAGCTTCAAACCGTGGA+TGG | 0.535663 | tig0000790:-7355 | Msa1336030:CDS |
| GGTGAAGTCCAGGAAACAAA+CGG | 0.538937 | tig0000790:-7787 | Msa1336030:CDS |
| ATCCTTTACCAATCCATCCA+CGG | 0.540905 | tig0000790:+7342 | None:intergenic |
| TGATGGAAACGACATGGGAG+TGG | 0.550160 | tig0000790:-2389 | Msa1336030:CDS |
| CCACAAAAGAAACAAACAGA+TGG | 0.556619 | tig0000790:-1105 | Msa1336030:CDS |
| AGGTCTATTACTGACAATCA+AGG | 0.558543 | tig0000790:-2334 | Msa1336030:CDS |
| ATTAAAGTTAATGGACCTGA+TGG | 0.563941 | tig0000790:-7098 | Msa1336030:CDS |
| TGGACCTGATGGGTGGTCAT+GGG | 0.566074 | tig0000790:-7087 | Msa1336030:CDS |
| TCCCTGGGTATAGTATCAGT+GGG | 0.570104 | tig0000790:-5129 | Msa1336030:CDS |
| CCATATATTCTTGTATTCAG+AGG | 0.578070 | tig0000790:-4740 | Msa1336030:CDS |
| GCTGATTCCATCTATGGCTG+CGG | 0.580408 | tig0000790:-8009 | Msa1336030:CDS |
| TTGTGAGGAATAGTAAACAT+AGG | 0.582720 | tig0000790:+8055 | None:intergenic |
| CCTGTGGTAGTTGACAATCA+AGG | 0.585283 | tig0000790:-6860 | Msa1336030:CDS |
| GATTCCATCTATGGCTGCGG+TGG | 0.592582 | tig0000790:-8006 | Msa1336030:CDS |
| AGAACACAATGTGCTCCTAA+CGG | 0.592633 | tig0000790:-7319 | Msa1336030:CDS |
| TGCTTCTATGGTATAGTGTG+TGG | 0.593669 | tig0000790:+1535 | None:intergenic |
| ATTGAATGCGAACTTTCCAT+CGG | 0.594509 | tig0000790:+4636 | None:intergenic |
| GAAAATTCAACGTTCAACAA+TGG | 0.594837 | tig0000790:+282 | None:intergenic |
| CCTTGATTGTCAACTACCAC+AGG | 0.598295 | tig0000790:+6860 | None:intergenic |
| AGAGTTGTGGGAGCTGCAGG+CGG | 0.599360 | tig0000790:-6670 | Msa1336030:CDS |
| GTGGTCATGGGATCCTGAGA+AGG | 0.604450 | tig0000790:-7075 | Msa1336030:intron |
| GCATTCAATTCAATACCTTG+TGG | 0.608043 | tig0000790:-4622 | Msa1336030:intron |
| CACGCTGTATCAGATGCCGA+TGG | 0.609383 | tig0000790:-4652 | Msa1336030:CDS |
| TGGAAACGACATGGGAGTGG+AGG | 0.611254 | tig0000790:-2386 | Msa1336030:CDS |
| CTCAGATCGGAAATGTCGAT+CGG | 0.614098 | tig0000790:-8087 | Msa1336030:exon |
| GGAAACGACATGGGAGTGGA+GGG | 0.615099 | tig0000790:-2385 | Msa1336030:CDS |
| CTTATCTGTATAGGTTCCTG+TGG | 0.615542 | tig0000790:-6876 | Msa1336030:intron |
| TGTAGTTGATGGAAACGACA+TGG | 0.619360 | tig0000790:-2395 | Msa1336030:CDS |
| CTGAAATTGAATAAGTTGTG+AGG | 0.620052 | tig0000790:+8040 | None:intergenic |
| TACACTGACTCACTCCTCGT+GGG | 0.622987 | tig0000790:+8182 | None:intergenic |
| TCATAGTTGATGGTCATGAA+AGG | 0.623919 | tig0000790:-2354 | Msa1336030:CDS |
| TGAAGTTAAAGGTTCAACAC+AGG | 0.625903 | tig0000790:-5346 | Msa1336030:intron |
| TCCGAGGTAGAATGTTTGCA+AGG | 0.626426 | tig0000790:-4712 | Msa1336030:CDS |
| TTAAAGTTAATGGACCTGAT+GGG | 0.630255 | tig0000790:-7097 | Msa1336030:CDS |
| GTTGATGCTTAACATTAACT+GGG | 0.634397 | tig0000790:+4122 | None:intergenic |
| ACCTTGCAAACATTCTACCT+CGG | 0.635423 | tig0000790:+4711 | None:intergenic |
| TTCATCGCCCAATCTCAGAT+CGG | 0.635686 | tig0000790:-8100 | Msa1336030:five_prime_UTR |
| ACCCACTGATACTATACCCA+GGG | 0.642433 | tig0000790:+5128 | None:intergenic |
| GCTGACAAGCGATATTCACC+AGG | 0.644183 | tig0000790:+378 | None:intergenic |
| CTACACTGACTCACTCCTCG+TGG | 0.645120 | tig0000790:+8181 | None:intergenic |
| GACCCACTGATACTATACCC+AGG | 0.649163 | tig0000790:+5127 | None:intergenic |
| CAGAGAGCTACTTCTTGTCG+TGG | 0.655387 | tig0000790:+4676 | None:intergenic |
| CACACTATACCATAGAAGCA+AGG | 0.657779 | tig0000790:-1532 | Msa1336030:CDS |
| GTAGGTTGAGCTTCAAACCG+TGG | 0.663440 | tig0000790:-7359 | Msa1336030:intron |
| GTAGTTGATGGAAACGACAT+GGG | 0.665582 | tig0000790:-2394 | Msa1336030:CDS |
| AAGTTAATGGACCTGATGGG+TGG | 0.666461 | tig0000790:-7094 | Msa1336030:CDS |
| GATGACACAAGATCGCCAGA+AGG | 0.666773 | tig0000790:+6589 | None:intergenic |
| GTATTCAGAGGATGTGTCCG+AGG | 0.678153 | tig0000790:-4728 | Msa1336030:CDS |
| AGCTCTCACTCTCACCCACG+AGG | 0.714312 | tig0000790:-8196 | Msa1336030:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+AGG | - | tig0000790:1309-1328 | Msa1336030:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | tig0000790:1274-1293 | Msa1336030:intron | 0.0% |
| !!! | TATTTATTTTAATTACTATC+GGG | - | tig0000790:623-642 | Msa1336030:intron | 10.0% |
| !! | TATCATATCTAATTAATAAT+AGG | + | tig0000790:1069-1088 | None:intergenic | 10.0% |
| !!! | ATTTGATTTATTTCAAAATT+GGG | + | tig0000790:5629-5648 | None:intergenic | 10.0% |
| !!! | TATTTGATTTATTTCAAAAT+TGG | + | tig0000790:5630-5649 | None:intergenic | 10.0% |
| !! | TTAAAAATGTTATTATTTAG+AGG | - | tig0000790:7833-7852 | Msa1336030:intron | 10.0% |
| !!! | TGATTTTATATCAAATATTT+TGG | - | tig0000790:7919-7938 | Msa1336030:intron | 10.0% |
| !!! | ATTTATTTTAATTACTATCG+GGG | - | tig0000790:624-643 | Msa1336030:intron | 15.0% |
| !!! | GTTTATTATTTGATACTTTT+TGG | - | tig0000790:998-1017 | Msa1336030:intron | 15.0% |
| !! | ATATATATATATATTAGGTG+TGG | - | tig0000790:1314-1333 | Msa1336030:intron | 15.0% |
| !! | AATTAGAAATACAATCATTA+GGG | - | tig0000790:2685-2704 | Msa1336030:intron | 15.0% |
| !!! | TTCATTTAACATTCTTTTTT+GGG | - | tig0000790:3563-3582 | Msa1336030:intron | 15.0% |
| !! | AGAATTAATTAAATACAATG+GGG | + | tig0000790:4165-4184 | None:intergenic | 15.0% |
| !! | GAGAATTAATTAAATACAAT+GGG | + | tig0000790:4166-4185 | None:intergenic | 15.0% |
| !! | AGAGAATTAATTAAATACAA+TGG | + | tig0000790:4167-4186 | None:intergenic | 15.0% |
| !!! | TTTTTATGAAATGGAAATAT+TGG | + | tig0000790:6753-6772 | None:intergenic | 15.0% |
| !! | TATTTCCATTTCATAAAAAA+TGG | - | tig0000790:6754-6773 | Msa1336030:intron | 15.0% |
| !!! | TTTTACAGTTTAAACTTTAA+AGG | - | tig0000790:6812-6831 | Msa1336030:intron | 15.0% |
| !! | AAACTGAATTTATAACAATA+GGG | + | tig0000790:6846-6865 | None:intergenic | 15.0% |
| !! | AAAACTGAATTTATAACAAT+AGG | + | tig0000790:6847-6866 | None:intergenic | 15.0% |
| !!! | TATTTTGATTGTTAAGCATT+CGG | - | tig0000790:567-586 | Msa1336030:intron | 20.0% |
| !! | TCCTTTGTAATTAAAGTTAA+TGG | - | tig0000790:1384-1403 | Msa1336030:intron | 20.0% |
| !! | TCCATTAACTTTAATTACAA+AGG | + | tig0000790:1388-1407 | None:intergenic | 20.0% |
| !!! | ATATAAATTTTCGTTTCACA+GGG | - | tig0000790:1671-1690 | Msa1336030:intron | 20.0% |
| !! | ACAACTACTAATGTTATATT+TGG | + | tig0000790:2039-2058 | None:intergenic | 20.0% |
| !! | ATATATATATGCATGAATCT+TGG | + | tig0000790:2062-2081 | None:intergenic | 20.0% |
| !! | AAACTGTATAAACAATACAA+TGG | - | tig0000790:2128-2147 | Msa1336030:intron | 20.0% |
| !! | GAATTAGAAATACAATCATT+AGG | - | tig0000790:2684-2703 | Msa1336030:intron | 20.0% |
| !! | TTATTCTTCTTTCAAACAAA+TGG | - | tig0000790:3062-3081 | Msa1336030:intron | 20.0% |
| !! | AAAAAGAATGTTAAATGAAG+CGG | + | tig0000790:3562-3581 | None:intergenic | 20.0% |
| !!! | CTTCATTTAACATTCTTTTT+TGG | - | tig0000790:3562-3581 | Msa1336030:intron | 20.0% |
| !!! | TCATTTAACATTCTTTTTTG+GGG | - | tig0000790:3564-3583 | Msa1336030:intron | 20.0% |
| !! | AAAGGAAAAACCATAATAAA+AGG | + | tig0000790:3705-3724 | None:intergenic | 20.0% |
| !! | GATGTGAAAAAAAAAACTAT+AGG | + | tig0000790:3973-3992 | None:intergenic | 20.0% |
| !! | TGAATTGAATATTATCTTTC+TGG | - | tig0000790:4193-4212 | Msa1336030:intron | 20.0% |
| !!! | ACATTTCTTAAAAGTCATTT+TGG | - | tig0000790:4602-4621 | Msa1336030:intron | 20.0% |
| !! | CATCTCTCTATAAAAAAAAA+GGG | + | tig0000790:5385-5404 | None:intergenic | 20.0% |
| !! | TTTATTTCAAAATTGGGATT+GGG | + | tig0000790:5623-5642 | None:intergenic | 20.0% |
| !! | ATTTATTTCAAAATTGGGAT+TGG | + | tig0000790:5624-5643 | None:intergenic | 20.0% |
| !! | ATATAGTGTAGGTTTAAAAA+TGG | - | tig0000790:5696-5715 | Msa1336030:intron | 20.0% |
| !! | GTTTAAAAATGGTTTATCAT+GGG | - | tig0000790:5707-5726 | Msa1336030:intron | 20.0% |
| !! | ATCTTTATAAATGTTCAAAC+AGG | + | tig0000790:5944-5963 | None:intergenic | 20.0% |
| !! | GTTTGTGTTGAATTTATTAT+AGG | - | tig0000790:6927-6946 | Msa1336030:intron | 20.0% |
| !!! | TACCTTTTGTTAATTGTATT+AGG | - | tig0000790:7331-7350 | Msa1336030:CDS | 20.0% |
| !! | AAAAATCAATCTATTGTGAA+GGG | - | tig0000790:7878-7897 | Msa1336030:intron | 20.0% |
| !!! | GAAATGGATTTTTCTATTGT+AGG | - | tig0000790:1114-1133 | Msa1336030:CDS | 25.0% |
| !! | GTGTATATATAAGCATTTTC+TGG | - | tig0000790:1240-1259 | Msa1336030:intron | 25.0% |
| !!! | GTTTGTTATTTCTTTGTCAT+TGG | - | tig0000790:1438-1457 | Msa1336030:intron | 25.0% |
| !! | TCATTGGTGAAATTTTATCA+TGG | - | tig0000790:1454-1473 | Msa1336030:intron | 25.0% |
| ! | CAGAAAAAATAATGACACAT+AGG | + | tig0000790:1529-1548 | None:intergenic | 25.0% |
| !!! | GTCATTATTTTTTCTGAATC+TGG | - | tig0000790:1533-1552 | Msa1336030:CDS | 25.0% |
| !! | GATATAAATTTTCGTTTCAC+AGG | - | tig0000790:1670-1689 | Msa1336030:intron | 25.0% |
| !! | AGTTCAACTTTTACATTTGA+AGG | + | tig0000790:1875-1894 | None:intergenic | 25.0% |
| ! | TTGTTTACAAATGTAATTCC+AGG | - | tig0000790:1953-1972 | Msa1336030:intron | 25.0% |
| ! | TTTCGACAATACAAATGATA+TGG | - | tig0000790:2173-2192 | Msa1336030:intron | 25.0% |
| ! | TGATTAATATTACACCGTTT+AGG | - | tig0000790:2255-2274 | Msa1336030:intron | 25.0% |
| ! | ATAAAACACAAGTTTAGCAA+AGG | - | tig0000790:2324-2343 | Msa1336030:CDS | 25.0% |
| ! | AATATTCACCTCTACATAAT+AGG | + | tig0000790:2358-2377 | None:intergenic | 25.0% |
| ! | TATTATGTAGAGGTGAATAT+TGG | - | tig0000790:2357-2376 | Msa1336030:CDS | 25.0% |
| ! | AATTACTTCTCAAGTTTGAA+AGG | - | tig0000790:2520-2539 | Msa1336030:intron | 25.0% |
| ! | GGTTCAAGAGAAAATATTAT+TGG | - | tig0000790:2834-2853 | Msa1336030:intron | 25.0% |
| ! | AAAAGAGGTTTAGATGTAAA+AGG | - | tig0000790:2875-2894 | Msa1336030:intron | 25.0% |
| !! | TGGTATATTGTCTAGAATTA+TGG | - | tig0000790:2946-2965 | Msa1336030:intron | 25.0% |
| ! | GATATGAAAGTTGAAGTTAA+AGG | - | tig0000790:3134-3153 | Msa1336030:intron | 25.0% |
| ! | AATGTATTGTGAGACTAAAT+AGG | + | tig0000790:3240-3259 | None:intergenic | 25.0% |
| ! | TCTAATCATGTTATTCTTGT+AGG | - | tig0000790:3294-3313 | Msa1336030:intron | 25.0% |
| ! | CAAAGAATGTGATAATATAG+TGG | + | tig0000790:3455-3474 | None:intergenic | 25.0% |
| ! | ATTGCGTTCTAATTTAGTTA+AGG | - | tig0000790:3481-3500 | Msa1336030:intron | 25.0% |
| ! | TTGCGTTCTAATTTAGTTAA+GGG | - | tig0000790:3482-3501 | Msa1336030:intron | 25.0% |
| !!! | CATTTAACATTCTTTTTTGG+GGG | - | tig0000790:3565-3584 | Msa1336030:intron | 25.0% |
| !! | TGTAGTTATGCCTTTTATTA+TGG | - | tig0000790:3692-3711 | Msa1336030:intron | 25.0% |
| ! | ATATATGGACTCCTAATATA+GGG | + | tig0000790:3739-3758 | None:intergenic | 25.0% |
| ! | AATATATGGACTCCTAATAT+AGG | + | tig0000790:3740-3759 | None:intergenic | 25.0% |
| !! | CATCCTTTTTGTTAATTTAC+AGG | - | tig0000790:4280-4299 | Msa1336030:intron | 25.0% |
| ! | CTTCCTGTAAATTAACAAAA+AGG | + | tig0000790:4286-4305 | None:intergenic | 25.0% |
| !!! | TCATTTTTATTGAATGCCAT+GGG | + | tig0000790:4476-4495 | None:intergenic | 25.0% |
| ! | ATGAGTTTATTCTATCAATG+TGG | - | tig0000790:4492-4511 | Msa1336030:intron | 25.0% |
| ! | CATTTATTGAAAATTTCACG+TGG | + | tig0000790:4561-4580 | None:intergenic | 25.0% |
| !! | CACGTGAAATTTTCAATAAA+TGG | - | tig0000790:4559-4578 | Msa1336030:intron | 25.0% |
| ! | TTTCAATAAATGGATGCAAA+TGG | - | tig0000790:4569-4588 | Msa1336030:intron | 25.0% |
| ! | TATATACATAGATAGAGAGA+TGG | - | tig0000790:5170-5189 | Msa1336030:CDS | 25.0% |
| ! | CCATCTCTCTATAAAAAAAA+AGG | + | tig0000790:5386-5405 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTATAGAGAGA+TGG | - | tig0000790:5383-5402 | Msa1336030:CDS | 25.0% |
| ! | GGTTTAAAAATGGTTTATCA+TGG | - | tig0000790:5706-5725 | Msa1336030:intron | 25.0% |
| ! | TAACAACTGCAAGTTAATAT+TGG | - | tig0000790:5863-5882 | Msa1336030:intron | 25.0% |
| ! | TTATCAATGTTAACTGTTAC+AGG | - | tig0000790:6048-6067 | Msa1336030:intron | 25.0% |
| ! | ATAACCAATTTACAGAAACA+AGG | + | tig0000790:6340-6359 | None:intergenic | 25.0% |
| !!! | AATTGGTTATTTCTGTCATT+TGG | - | tig0000790:6350-6369 | Msa1336030:intron | 25.0% |
| !!! | ATTTTTAAAATCCCTCCAAA+AGG | - | tig0000790:6540-6559 | Msa1336030:CDS | 25.0% |
| ! | TGTTTACATTCTGAATCATT+TGG | + | tig0000790:6567-6586 | None:intergenic | 25.0% |
| ! | TAACACTCGAATGTTAAATT+TGG | - | tig0000790:6680-6699 | Msa1336030:CDS | 25.0% |
| ! | AACACTCGAATGTTAAATTT+GGG | - | tig0000790:6681-6700 | Msa1336030:CDS | 25.0% |
| !!! | TTCTGCCATTTTTTATGAAA+TGG | + | tig0000790:6762-6781 | None:intergenic | 25.0% |
| ! | CAAGAAATTGGAGAATTATA+TGG | - | tig0000790:6999-7018 | Msa1336030:intron | 25.0% |
| ! | CACCTAATACAATTAACAAA+AGG | + | tig0000790:7336-7355 | None:intergenic | 25.0% |
| !! | CTTTTGTTAATTGTATTAGG+TGG | - | tig0000790:7334-7353 | Msa1336030:CDS | 25.0% |
| !!! | TTTTGTGGTTTTACATTATC+AGG | + | tig0000790:7374-7393 | None:intergenic | 25.0% |
| !! | TTTTATCTCGTAGTGATTAT+TGG | - | tig0000790:7475-7494 | Msa1336030:intron | 25.0% |
| ! | AAATAGCATATTCTACTACA+TGG | - | tig0000790:7546-7565 | Msa1336030:intron | 25.0% |
| ! | AATAGCATATTCTACTACAT+GGG | - | tig0000790:7547-7566 | Msa1336030:intron | 25.0% |
| !! | AATTTTGCTTTAATTGCAGT+TGG | - | tig0000790:7575-7594 | Msa1336030:intron | 25.0% |
| ! | ATATAGTCTCAAACTTTAAC+AGG | - | tig0000790:7652-7671 | Msa1336030:intron | 25.0% |
| !!! | GATGATATTTTTATGCATAC+TGG | - | tig0000790:7707-7726 | Msa1336030:intron | 25.0% |
| ! | ATTTCTGTATGAACTCAAAT+TGG | - | tig0000790:7736-7755 | Msa1336030:intron | 25.0% |
| ! | GAAAAATCAATCTATTGTGA+AGG | - | tig0000790:7877-7896 | Msa1336030:intron | 25.0% |
| ! | AAAATCAATCTATTGTGAAG+GGG | - | tig0000790:7879-7898 | Msa1336030:intron | 25.0% |
| ! | TAAGTTTGATTGTTCCTTAT+CGG | - | tig0000790:8056-8075 | Msa1336030:CDS | 25.0% |
| ! | AATAAGATAGAATACCGATA+AGG | + | tig0000790:8073-8092 | None:intergenic | 25.0% |
| ! | TTATCGGTATTCTATCTTAT+TGG | - | tig0000790:8072-8091 | Msa1336030:CDS | 25.0% |
| !!! | ATCTTATTGGTTTAATGTCT+AGG | - | tig0000790:8085-8104 | Msa1336030:exon | 25.0% |
| TTGTGAGGAATAGTAAACAT+AGG | + | tig0000790:439-458 | None:intergenic | 30.0% | |
| CTGAAATTGAATAAGTTGTG+AGG | + | tig0000790:454-473 | None:intergenic | 30.0% | |
| GACATGTGAATAATCCAATT+TGG | + | tig0000790:733-752 | None:intergenic | 30.0% | |
| GCTTCAGAATAAAATTGCAT+AGG | + | tig0000790:868-887 | None:intergenic | 30.0% | |
| TATAGAAACAACTTATTCGC+AGG | - | tig0000790:958-977 | Msa1336030:intron | 30.0% | |
| ATTCACAACTTGTGTTGAAA+TGG | - | tig0000790:1098-1117 | Msa1336030:CDS | 30.0% | |
| !! | TAACGGGTACTATTTTATTC+CGG | - | tig0000790:1189-1208 | Msa1336030:intron | 30.0% |
| ! | AATTTTACCTTGTCGTAAAC+CGG | + | tig0000790:1211-1230 | None:intergenic | 30.0% |
| ! | ACGACAAGGTAAAATTTTCA+TGG | - | tig0000790:1215-1234 | Msa1336030:intron | 30.0% |
| !!! | ACGCATTTATTTTTTGTCGT+AGG | - | tig0000790:1359-1378 | Msa1336030:intron | 30.0% |
| !!! | CGCATTTATTTTTTGTCGTA+GGG | - | tig0000790:1360-1379 | Msa1336030:intron | 30.0% |
| ! | ATTAAAGTTAATGGACCTGA+TGG | - | tig0000790:1393-1412 | Msa1336030:intron | 30.0% |
| ! | TTAAAGTTAATGGACCTGAT+GGG | - | tig0000790:1394-1413 | Msa1336030:intron | 30.0% |
| AAGAAATAACAAACCTTCTC+AGG | + | tig0000790:1432-1451 | None:intergenic | 30.0% | |
| ! | TGGTATACTTTTGCTTAATC+TGG | - | tig0000790:1745-1764 | Msa1336030:intron | 30.0% |
| TACAGAAATTTGTACTCTGT+AGG | - | tig0000790:1783-1802 | Msa1336030:intron | 30.0% | |
| TTACAAATGTAATTCCAGGT+AGG | - | tig0000790:1957-1976 | Msa1336030:intron | 30.0% | |
| TACAAATGTAATTCCAGGTA+GGG | - | tig0000790:1958-1977 | Msa1336030:intron | 30.0% | |
| ! | GGGAAGTTTATGTTTACTTT+TGG | - | tig0000790:1978-1997 | Msa1336030:intron | 30.0% |
| GTATTGTCGAAACATGATAT+CGG | + | tig0000790:2165-2184 | None:intergenic | 30.0% | |
| GACAATACAAATGATATGGT+TGG | - | tig0000790:2177-2196 | Msa1336030:intron | 30.0% | |
| TTAGACATATCTTGCATTTC+TGG | + | tig0000790:2231-2250 | None:intergenic | 30.0% | |
| TGGGTAGAAAAAATCCTAAA+CGG | + | tig0000790:2272-2291 | None:intergenic | 30.0% | |
| ! | TATACCTTGTTGTACTTCTT+AGG | + | tig0000790:2305-2324 | None:intergenic | 30.0% |
| !!! | TGTCATGTTTTTAGTATCTC+AGG | - | tig0000790:2400-2419 | Msa1336030:CDS | 30.0% |
| CATGCATAACATGAAGATAT+AGG | - | tig0000790:2428-2447 | Msa1336030:intron | 30.0% | |
| TCAATACCACACAAAATTGT+GGG | + | tig0000790:2570-2589 | None:intergenic | 30.0% | |
| TTCAATACCACACAAAATTG+TGG | + | tig0000790:2571-2590 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTATTGGCTTTTTC+CGG | + | tig0000790:2601-2620 | None:intergenic | 30.0% |
| !!! | CACTAACTTCGCTTTTTTAT+TGG | + | tig0000790:2611-2630 | None:intergenic | 30.0% |
| AGATAGTAGAATCTCATCTT+AGG | - | tig0000790:2723-2742 | Msa1336030:intron | 30.0% | |
| !!! | CTCATTTCTAGTGCTTTTAT+AGG | + | tig0000790:2773-2792 | None:intergenic | 30.0% |
| AATGGACAATGTAACTCAAT+CGG | + | tig0000790:2923-2942 | None:intergenic | 30.0% | |
| CTAGACAATATACCAAGTAA+TGG | + | tig0000790:2941-2960 | None:intergenic | 30.0% | |
| GATTAGACAAAACATAGCAA+GGG | + | tig0000790:3281-3300 | None:intergenic | 30.0% | |
| TGATTAGACAAAACATAGCA+AGG | + | tig0000790:3282-3301 | None:intergenic | 30.0% | |
| AATCATGTTATTCTTGTAGG+TGG | - | tig0000790:3297-3316 | Msa1336030:intron | 30.0% | |
| TTATTCTTGTAGGTGGAATT+GGG | - | tig0000790:3304-3323 | Msa1336030:intron | 30.0% | |
| ! | ATGATATTTTCTTTGTCCCT+GGG | - | tig0000790:3347-3366 | Msa1336030:intron | 30.0% |
| ! | TTATGGTTTTTCCTTTTTCC+AGG | - | tig0000790:3709-3728 | Msa1336030:intron | 30.0% |
| ! | TATGGTTTTTCCTTTTTCCA+GGG | - | tig0000790:3710-3729 | Msa1336030:intron | 30.0% |
| CCTCTGAATACAAGAATATA+TGG | + | tig0000790:3754-3773 | None:intergenic | 30.0% | |
| CCATATATTCTTGTATTCAG+AGG | - | tig0000790:3751-3770 | Msa1336030:intron | 30.0% | |
| TTCAGAATGAAATTACCACA+AGG | + | tig0000790:3887-3906 | None:intergenic | 30.0% | |
| !! | GAATTAGTCTTCAAGATTCT+AGG | - | tig0000790:4043-4062 | Msa1336030:intron | 30.0% |
| ! | ATACTGCAATTTTTCTCTCT+TGG | - | tig0000790:4085-4104 | Msa1336030:intron | 30.0% |
| ! | GTATTTTCACCCTTATAGTA+GGG | + | tig0000790:4322-4341 | None:intergenic | 30.0% |
| ! | TGTATTTTCACCCTTATAGT+AGG | + | tig0000790:4323-4342 | None:intergenic | 30.0% |
| GTTGATGCTTAACATTAACT+GGG | + | tig0000790:4372-4391 | None:intergenic | 30.0% | |
| TGTTGATGCTTAACATTAAC+TGG | + | tig0000790:4373-4392 | None:intergenic | 30.0% | |
| AAAATTCCAGGTACACTATA+TGG | - | tig0000790:4408-4427 | Msa1336030:intron | 30.0% | |
| ACACTATATGGTTAAACATG+TGG | - | tig0000790:4420-4439 | Msa1336030:intron | 30.0% | |
| !!! | CTTCATTTTTTTTTCTCCCA+TGG | - | tig0000790:4457-4476 | Msa1336030:intron | 30.0% |
| !! | CTCATTTTTATTGAATGCCA+TGG | + | tig0000790:4477-4496 | None:intergenic | 30.0% |
| GTCAAGTGCAAAATGAATAT+TGG | + | tig0000790:4959-4978 | None:intergenic | 30.0% | |
| TATAAAAAAAAAGGGCAACC+CGG | + | tig0000790:5377-5396 | None:intergenic | 30.0% | |
| ! | GGAAATAATCTTAGTTCTTG+AGG | - | tig0000790:5425-5444 | Msa1336030:intron | 30.0% |
| ! | AATAATCTTAGTTCTTGAGG+AGG | - | tig0000790:5428-5447 | Msa1336030:intron | 30.0% |
| !! | GTTTTAGTAGTGTTGTAGTT+GGG | - | tig0000790:5474-5493 | Msa1336030:intron | 30.0% |
| ! | AATTGTTACTTGTGAGACAA+CGG | + | tig0000790:5510-5529 | None:intergenic | 30.0% |
| AAATAGACCTTCATTGATGA+TGG | - | tig0000790:5645-5664 | Msa1336030:intron | 30.0% | |
| TTTGTTTCCATCATCAATGA+AGG | + | tig0000790:5655-5674 | None:intergenic | 30.0% | |
| TCATTTATTACAAGACCTTG+TGG | - | tig0000790:5740-5759 | Msa1336030:intron | 30.0% | |
| !!! | TTTTCACGTGTTTTTTCAGA+GGG | + | tig0000790:5821-5840 | None:intergenic | 30.0% |
| !!! | TTTTTCACGTGTTTTTTCAG+AGG | + | tig0000790:5822-5841 | None:intergenic | 30.0% |
| ATTGGAATTCCATTACATCT+AGG | - | tig0000790:5881-5900 | Msa1336030:intron | 30.0% | |
| CATAGACAATGCATTCTTTA+TGG | - | tig0000790:6235-6254 | Msa1336030:intron | 30.0% | |
| CTCAGTTAACTTTCAGTATA+GGG | - | tig0000790:6275-6294 | Msa1336030:intron | 30.0% | |
| TCAGTTAACTTTCAGTATAG+GGG | - | tig0000790:6276-6295 | Msa1336030:intron | 30.0% | |
| TTTACAGAAACAAGGAAAGT+GGG | + | tig0000790:6332-6351 | None:intergenic | 30.0% | |
| ATTTACAGAAACAAGGAAAG+TGG | + | tig0000790:6333-6352 | None:intergenic | 30.0% | |
| !! | CTTTCCTTGTTTCTGTAAAT+TGG | - | tig0000790:6333-6352 | Msa1336030:intron | 30.0% |
| AATAAATCAAGTGATCAAGC+AGG | + | tig0000790:6512-6531 | None:intergenic | 30.0% | |
| AGAATGTAAACATAATCGTC+AGG | - | tig0000790:6575-6594 | Msa1336030:CDS | 30.0% | |
| ATTTAGAAACATACCCAACA+AGG | + | tig0000790:6885-6904 | None:intergenic | 30.0% | |
| GCATTACAAGTTCAAGAAAT+TGG | - | tig0000790:6987-7006 | Msa1336030:intron | 30.0% | |
| TTGTGAAAAGCTTGGAATTT+AGG | - | tig0000790:7106-7125 | Msa1336030:CDS | 30.0% | |
| TCTTCTATTGAAGCCATATT+TGG | + | tig0000790:7185-7204 | None:intergenic | 30.0% | |
| ACCACAAAGATCATATGAAA+CGG | + | tig0000790:7216-7235 | None:intergenic | 30.0% | |
| ATGATCTTTGTGGTTTAGTT+AGG | - | tig0000790:7222-7241 | Msa1336030:intron | 30.0% | |
| TACCAAGAAAACTACAGAAA+GGG | + | tig0000790:7286-7305 | None:intergenic | 30.0% | |
| TTACCAAGAAAACTACAGAA+AGG | + | tig0000790:7287-7306 | None:intergenic | 30.0% | |
| AAGAAACAAACAGATGGAAA+TGG | - | tig0000790:7392-7411 | Msa1336030:intron | 30.0% | |
| AGAAACAAACAGATGGAAAT+GGG | - | tig0000790:7393-7412 | Msa1336030:intron | 30.0% | |
| ACTACGAGATAAAACAAAAG+GGG | + | tig0000790:7469-7488 | None:intergenic | 30.0% | |
| CACTACGAGATAAAACAAAA+GGG | + | tig0000790:7470-7489 | None:intergenic | 30.0% | |
| TCACTACGAGATAAAACAAA+AGG | + | tig0000790:7471-7490 | None:intergenic | 30.0% | |
| ! | AAGCAAAAGCACAAAATTTG+TGG | - | tig0000790:7787-7806 | Msa1336030:CDS | 30.0% |
| CTTAGAAGATCATTTAGAAG+CGG | + | tig0000790:8040-8059 | None:intergenic | 30.0% | |
| ATCGCAACATCAATATAAGA+TGG | + | tig0000790:8182-8201 | None:intergenic | 30.0% | |
| GAAAATTCAACGTTCAACAA+TGG | + | tig0000790:8212-8231 | None:intergenic | 30.0% | |
| CAAATCAAACCAGATCTTAG+AGG | + | tig0000790:365-384 | None:intergenic | 35.0% | |
| ! | GATATTTTCGTTGTTATCGC+AGG | - | tig0000790:668-687 | Msa1336030:intron | 35.0% |
| CAGAATAAAATTGCATAGGC+TGG | + | tig0000790:864-883 | None:intergenic | 35.0% | |
| !! | TATTCTGAAGCTCTTGAAGA+TGG | - | tig0000790:877-896 | Msa1336030:intron | 35.0% |
| GGAATAAAATAGTACCCGTT+AGG | + | tig0000790:1190-1209 | None:intergenic | 35.0% | |
| ! | TTTTATTCCGGTTTACGACA+AGG | - | tig0000790:1201-1220 | Msa1336030:intron | 35.0% |
| !! | AAGCATTTTCTGGTCAACTT+TGG | - | tig0000790:1250-1269 | Msa1336030:intron | 35.0% |
| ! | TTTTCTGAATCTGGACATAG+TGG | - | tig0000790:1542-1561 | Msa1336030:CDS | 35.0% |
| ACAGGAACCTATACAGATAA+GGG | + | tig0000790:1616-1635 | None:intergenic | 35.0% | |
| ! | AAATTTTCGTTTCACAGGGT+TGG | - | tig0000790:1675-1694 | Msa1336030:intron | 35.0% |
| TCTATATCTGGTAGAGTTGT+GGG | - | tig0000790:1809-1828 | Msa1336030:intron | 35.0% | |
| GAAAGCTGTCCAGTTAAAAA+TGG | - | tig0000790:1845-1864 | Msa1336030:intron | 35.0% | |
| !!! | TCAGTTTTGACTTCATCATC+AGG | - | tig0000790:1923-1942 | Msa1336030:intron | 35.0% |
| TAAACATAAACTTCCCTACC+TGG | + | tig0000790:1974-1993 | None:intergenic | 35.0% | |
| ! | CTCTTTCACTTGCACTATTT+TGG | - | tig0000790:2004-2023 | Msa1336030:intron | 35.0% |
| TGGAAAGTAGCTGTGTATAA+AGG | - | tig0000790:2197-2216 | Msa1336030:intron | 35.0% | |
| ! | TCATCCTAAGAAGTACAACA+AGG | - | tig0000790:2298-2317 | Msa1336030:intron | 35.0% |
| ACATCCAACCTATTATGTAG+AGG | - | tig0000790:2347-2366 | Msa1336030:CDS | 35.0% | |
| TTCACCTCTACATAATAGGT+TGG | + | tig0000790:2354-2373 | None:intergenic | 35.0% | |
| TCTATTGTATATCACACCCA+AGG | + | tig0000790:2499-2518 | None:intergenic | 35.0% | |
| ! | CACAAAATTGTGGGTCTTAT+AGG | + | tig0000790:2561-2580 | None:intergenic | 35.0% |
| ! | ATAAGACCCACAATTTTGTG+TGG | - | tig0000790:2561-2580 | Msa1336030:intron | 35.0% |
| TAGAGGTGGAAATGTTACAA+TGG | - | tig0000790:2634-2653 | Msa1336030:intron | 35.0% | |
| GAAATGTTACAATGGATGAG+TGG | - | tig0000790:2642-2661 | Msa1336030:intron | 35.0% | |
| AATCTCATCTTAGGTAGTCT+GGG | - | tig0000790:2732-2751 | Msa1336030:intron | 35.0% | |
| ACTAGAAATGAGTGTAGACT+AGG | - | tig0000790:2781-2800 | Msa1336030:intron | 35.0% | |
| GAGTTACATTGTCCATTACT+TGG | - | tig0000790:2926-2945 | Msa1336030:intron | 35.0% | |
| TGAAGTTAAAGGTTCAACAC+AGG | - | tig0000790:3145-3164 | Msa1336030:intron | 35.0% | |
| ATAGGATGTAGGAAAGACAA+GGG | + | tig0000790:3222-3241 | None:intergenic | 35.0% | |
| AATAGGATGTAGGAAAGACA+AGG | + | tig0000790:3223-3242 | None:intergenic | 35.0% | |
| TGTGAGACTAAATAGGATGT+AGG | + | tig0000790:3233-3252 | None:intergenic | 35.0% | |
| GTTATTCTTGTAGGTGGAAT+TGG | - | tig0000790:3303-3322 | Msa1336030:intron | 35.0% | |
| ! | GATGATATTTTCTTTGTCCC+TGG | - | tig0000790:3346-3365 | Msa1336030:intron | 35.0% |
| ! | AGGATATTTTCGCTCTCAAT+CGG | - | tig0000790:3594-3613 | Msa1336030:intron | 35.0% |
| CTTAAACTTCCAAACTAGCA+TGG | - | tig0000790:3617-3636 | Msa1336030:intron | 35.0% | |
| AAGGCATAACTACAAGAGAA+AGG | + | tig0000790:3686-3705 | None:intergenic | 35.0% | |
| ATTGAATGCGAACTTTCCAT+CGG | + | tig0000790:3858-3877 | None:intergenic | 35.0% | |
| GCATTCAATTCAATACCTTG+TGG | - | tig0000790:3869-3888 | Msa1336030:intron | 35.0% | |
| TTATCTTGATTACATGCTGC+TGG | - | tig0000790:4232-4251 | Msa1336030:intron | 35.0% | |
| AGCTCTCAATTCAAGCAAAT+AGG | + | tig0000790:4260-4279 | None:intergenic | 35.0% | |
| ! | TAGTGTACCTGGAATTTTTG+AGG | + | tig0000790:4406-4425 | None:intergenic | 35.0% |
| GTTTAACCATATAGTGTACC+TGG | + | tig0000790:4417-4436 | None:intergenic | 35.0% | |
| !! | TGTCATGTATTGACTAGCAA+TGG | + | tig0000790:4901-4920 | None:intergenic | 35.0% |
| !! | AGATGGAGAGTTTTGTAAAG+AGG | - | tig0000790:5187-5206 | Msa1336030:intron | 35.0% |
| !! | GATGGAGAGTTTTGTAAAGA+GGG | - | tig0000790:5188-5207 | Msa1336030:intron | 35.0% |
| !! | ATGGAGAGTTTTGTAAAGAG+GGG | - | tig0000790:5189-5208 | Msa1336030:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | - | tig0000790:5280-5299 | Msa1336030:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | tig0000790:5285-5304 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | - | tig0000790:5285-5304 | Msa1336030:intron | 35.0% | |
| TTATAGAGAGATGGAGAGTT+TGG | - | tig0000790:5392-5411 | Msa1336030:intron | 35.0% | |
| TATAGAGAGATGGAGAGTTT+GGG | - | tig0000790:5393-5412 | Msa1336030:intron | 35.0% | |
| !! | CGTTTTAGTAGTGTTGTAGT+TGG | - | tig0000790:5473-5492 | Msa1336030:intron | 35.0% |
| ! | ATTGTTACTTGTGAGACAAC+GGG | + | tig0000790:5509-5528 | None:intergenic | 35.0% |
| CACTTGCGTATATATAGTGT+AGG | - | tig0000790:5685-5704 | Msa1336030:intron | 35.0% | |
| AAAGTCTTCTTCGACTAAGT+GGG | + | tig0000790:5789-5808 | None:intergenic | 35.0% | |
| TAAAGTCTTCTTCGACTAAG+TGG | + | tig0000790:5790-5809 | None:intergenic | 35.0% | |
| TGTTAACTGTTACAGGTAAC+TGG | - | tig0000790:6055-6074 | Msa1336030:intron | 35.0% | |
| !! | TCATAGTTGATGGTCATGAA+AGG | - | tig0000790:6137-6156 | Msa1336030:intron | 35.0% |
| AGGTCTATTACTGACAATCA+AGG | - | tig0000790:6157-6176 | Msa1336030:intron | 35.0% | |
| AGGTTATTACAAGCTTGATC+AGG | - | tig0000790:6177-6196 | Msa1336030:intron | 35.0% | |
| CTTGATCAGGTATTAGTATG+AGG | - | tig0000790:6190-6209 | Msa1336030:intron | 35.0% | |
| CCTATACTGAAAGTTAACTG+AGG | + | tig0000790:6277-6296 | None:intergenic | 35.0% | |
| CCTCAGTTAACTTTCAGTAT+AGG | - | tig0000790:6274-6293 | Msa1336030:intron | 35.0% | |
| !! | TGGTGTTATAAAACTCAGAC+CGG | - | tig0000790:6370-6389 | Msa1336030:intron | 35.0% |
| TTATAAAACTCAGACCGGAT+CGG | - | tig0000790:6375-6394 | Msa1336030:intron | 35.0% | |
| GCATCCTTACTAATATGAAC+CGG | - | tig0000790:6461-6480 | Msa1336030:intron | 35.0% | |
| TTACTAATATGAACCGGTCT+CGG | - | tig0000790:6467-6486 | Msa1336030:intron | 35.0% | |
| ! | AATCATTTGGACCTTTTGGA+GGG | + | tig0000790:6554-6573 | None:intergenic | 35.0% |
| ! | TCTGAATCATTTGGACCTTT+TGG | + | tig0000790:6558-6577 | None:intergenic | 35.0% |
| TCTTTGTGGTTTAGTTAGGA+TGG | - | tig0000790:7226-7245 | Msa1336030:intron | 35.0% | |
| TTAGTTAGGATGGTTAGTAG+CGG | - | tig0000790:7236-7255 | Msa1336030:intron | 35.0% | |
| ACCAAGAAAACTACAGAAAG+GGG | + | tig0000790:7285-7304 | None:intergenic | 35.0% | |
| !! | CCATCTGTTTGTTTCTTTTG+TGG | + | tig0000790:7389-7408 | None:intergenic | 35.0% |
| CCACAAAAGAAACAAACAGA+TGG | - | tig0000790:7386-7405 | Msa1336030:intron | 35.0% | |
| AAATGGGAATTTCTGCTTTG+AGG | - | tig0000790:7409-7428 | Msa1336030:intron | 35.0% | |
| CTACGAGATAAAACAAAAGG+GGG | + | tig0000790:7468-7487 | None:intergenic | 35.0% | |
| TATCTCGTAGTGATTATTGG+AGG | - | tig0000790:7478-7497 | Msa1336030:intron | 35.0% | |
| AGTCTCAAACTTTAACAGGA+AGG | - | tig0000790:7656-7675 | Msa1336030:intron | 35.0% | |
| TTTAATGTCTAGGTTCTTCC+TGG | - | tig0000790:8095-8114 | Msa1336030:exon | 35.0% | |
| AGAGTGAGAGCTAGACAATT+GGG | + | tig0000790:287-306 | None:intergenic | 40.0% | |
| ! | GACATTTCCGATCTGAGATT+GGG | + | tig0000790:401-420 | None:intergenic | 40.0% |
| AATCGCAGAAGAGAAAGAGT+AGG | + | tig0000790:545-564 | None:intergenic | 40.0% | |
| GAAACAAACGGATGCCAAAT+TGG | - | tig0000790:716-735 | Msa1336030:intron | 40.0% | |
| !! | GGTATCTTGCTGTTCATACT+CGG | - | tig0000790:1019-1038 | Msa1336030:intron | 40.0% |
| ATCCTTTACCAATCCATCCA+CGG | + | tig0000790:1152-1171 | None:intergenic | 40.0% | |
| AGAACACAATGTGCTCCTAA+CGG | - | tig0000790:1172-1191 | Msa1336030:intron | 40.0% | |
| GCATACAGGTGTGACATAAA+AGG | + | tig0000790:1494-1513 | None:intergenic | 40.0% | |
| GGTCATGCATAATTGCATAC+AGG | + | tig0000790:1508-1527 | None:intergenic | 40.0% | |
| AGGAACCTATACAGATAAGG+GGG | + | tig0000790:1614-1633 | None:intergenic | 40.0% | |
| CAGGAACCTATACAGATAAG+GGG | + | tig0000790:1615-1634 | None:intergenic | 40.0% | |
| CACAGGAACCTATACAGATA+AGG | + | tig0000790:1617-1636 | None:intergenic | 40.0% | |
| CTTATCTGTATAGGTTCCTG+TGG | - | tig0000790:1615-1634 | Msa1336030:intron | 40.0% | |
| CTACTTTATGTCCTACTGCA+TGG | - | tig0000790:1725-1744 | Msa1336030:intron | 40.0% | |
| ! | GCAAAAGTATACCATGCAGT+AGG | + | tig0000790:1739-1758 | None:intergenic | 40.0% |
| CTCTGTAGGTTCTCTATATC+TGG | - | tig0000790:1797-1816 | Msa1336030:intron | 40.0% | |
| CTCTATATCTGGTAGAGTTG+TGG | - | tig0000790:1808-1827 | Msa1336030:intron | 40.0% | |
| AGCTGTCCAGTTAAAAATGG+AGG | - | tig0000790:1848-1867 | Msa1336030:intron | 40.0% | |
| !! | GAAGGACCTCCATTTTTAAC+TGG | + | tig0000790:1857-1876 | None:intergenic | 40.0% |
| GTTGAACTATTGTCTCCTTC+TGG | - | tig0000790:1887-1906 | Msa1336030:intron | 40.0% | |
| CTTCTTAGGATGAACTGTGT+GGG | + | tig0000790:2291-2310 | None:intergenic | 40.0% | |
| ACTTCTTAGGATGAACTGTG+TGG | + | tig0000790:2292-2311 | None:intergenic | 40.0% | |
| ATGTCAACGTGAATCCAAGT+AGG | - | tig0000790:2454-2473 | Msa1336030:intron | 40.0% | |
| TGTCAACGTGAATCCAAGTA+GGG | - | tig0000790:2455-2474 | Msa1336030:intron | 40.0% | |
| TCCAAGTAGGGTGAATGAAA+TGG | - | tig0000790:2467-2486 | Msa1336030:intron | 40.0% | |
| TCCATTTCATTCACCCTACT+TGG | + | tig0000790:2471-2490 | None:intergenic | 40.0% | |
| AATGAAATGGAGAACGCCTT+GGG | - | tig0000790:2480-2499 | Msa1336030:intron | 40.0% | |
| ! | TGTGGTATTGAATGTTGAGC+CGG | - | tig0000790:2579-2598 | Msa1336030:intron | 40.0% |
| AAGCGAAGTTAGTGTCATAG+AGG | - | tig0000790:2617-2636 | Msa1336030:intron | 40.0% | |
| ATCATTAGGGTTGACGCAAT+AGG | - | tig0000790:2698-2717 | Msa1336030:intron | 40.0% | |
| GAATCTCATCTTAGGTAGTC+TGG | - | tig0000790:2731-2750 | Msa1336030:intron | 40.0% | |
| AGAAATGAGTGTAGACTAGG+TGG | - | tig0000790:2784-2803 | Msa1336030:intron | 40.0% | |
| GCTTCTGTTGTGTAGTTGAT+AGG | - | tig0000790:3005-3024 | Msa1336030:intron | 40.0% | |
| ! | GCTCATATTTTCCTGCACAT+TGG | + | tig0000790:3097-3116 | None:intergenic | 40.0% |
| ATCAACACATGGCAAAATGC+TGG | + | tig0000790:3198-3217 | None:intergenic | 40.0% | |
| !! | AAGACAAGGGTATCAACACA+TGG | + | tig0000790:3209-3228 | None:intergenic | 40.0% |
| !! | TGGAATTGGGCTTTGGAAAT+GGG | - | tig0000790:3317-3336 | Msa1336030:intron | 40.0% |
| TATAGGGTTTCCCTGGAAAA+AGG | + | tig0000790:3723-3742 | None:intergenic | 40.0% | |
| TTCCAGGGAAACCCTATATT+AGG | - | tig0000790:3725-3744 | Msa1336030:intron | 40.0% | |
| ACCTTGCAAACATTCTACCT+CGG | + | tig0000790:3783-3802 | None:intergenic | 40.0% | |
| TGTTTGCAAGGTTCTGCTAA+TGG | - | tig0000790:3791-3810 | Msa1336030:intron | 40.0% | |
| ! | TCGCTAGTCTGTTGAATTTC+TGG | - | tig0000790:3914-3933 | Msa1336030:intron | 40.0% |
| TGAACTAGTGCCCTACTATA+AGG | - | tig0000790:4309-4328 | Msa1336030:intron | 40.0% | |
| GAACTAGTGCCCTACTATAA+GGG | - | tig0000790:4310-4329 | Msa1336030:intron | 40.0% | |
| ACATTAACTGGGACACTAGA+TGG | + | tig0000790:4361-4380 | None:intergenic | 40.0% | |
| AACAGTGCCTCAAAAATTCC+AGG | - | tig0000790:4396-4415 | Msa1336030:intron | 40.0% | |
| ACATATTTCACTTCCTGCAC+TGG | - | tig0000790:4680-4699 | Msa1336030:CDS | 40.0% | |
| TTTGTAAAGAGGGGTAACCT+TGG | - | tig0000790:5198-5217 | Msa1336030:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | tig0000790:5279-5298 | Msa1336030:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | tig0000790:5311-5330 | Msa1336030:intron | 40.0% | |
| ATAGAGAGATGGAGAGTTTG+GGG | - | tig0000790:5394-5413 | Msa1336030:intron | 40.0% | |
| CAAATCTAGGAGTGAAGTAC+AGG | + | tig0000790:5545-5564 | None:intergenic | 40.0% | |
| CCATGTCACAGAACAAATCT+AGG | + | tig0000790:5558-5577 | None:intergenic | 40.0% | |
| ! | CCTAGATTTGTTCTGTGACA+TGG | - | tig0000790:5555-5574 | Msa1336030:intron | 40.0% |
| AAGTCTTCTTCGACTAAGTG+GGG | + | tig0000790:5788-5807 | None:intergenic | 40.0% | |
| CGTGTGATACCTAGATGTAA+TGG | + | tig0000790:5893-5912 | None:intergenic | 40.0% | |
| ! | CAGGTAACTGGATTTTCTGT+CGG | - | tig0000790:6067-6086 | Msa1336030:intron | 40.0% |
| ! | AGGTAACTGGATTTTCTGTC+GGG | - | tig0000790:6068-6087 | Msa1336030:intron | 40.0% |
| !! | TGTAGTTGATGGAAACGACA+TGG | - | tig0000790:6096-6115 | Msa1336030:intron | 40.0% |
| !! | GTAGTTGATGGAAACGACAT+GGG | - | tig0000790:6097-6116 | Msa1336030:intron | 40.0% |
| GGTGTCAAGATCATAGTTGA+TGG | - | tig0000790:6127-6146 | Msa1336030:intron | 40.0% | |
| ATCAGTCAAATTGACCGATC+CGG | + | tig0000790:6392-6411 | None:intergenic | 40.0% | |
| ATTTGACTGATTAACCAGCC+AGG | - | tig0000790:6401-6420 | Msa1336030:intron | 40.0% | |
| TAACCAGCCAGGTGATTAAT+TGG | - | tig0000790:6412-6431 | Msa1336030:intron | 40.0% | |
| ! | GAGACCGGTTCATATTAGTA+AGG | + | tig0000790:6468-6487 | None:intergenic | 40.0% |
| ! | GAATCATTTGGACCTTTTGG+AGG | + | tig0000790:6555-6574 | None:intergenic | 40.0% |
| AGTGAATTTAGTGTCAACGC+AGG | - | tig0000790:6616-6635 | Msa1336030:CDS | 40.0% | |
| GAAACATACCCAACAAGGTA+AGG | + | tig0000790:6880-6899 | None:intergenic | 40.0% | |
| TGCTTCTATGGTATAGTGTG+TGG | + | tig0000790:6959-6978 | None:intergenic | 40.0% | |
| CACACTATACCATAGAAGCA+AGG | - | tig0000790:6959-6978 | Msa1336030:intron | 40.0% | |
| ATGCTTCTTCCTTGCTTCTA+TGG | + | tig0000790:6971-6990 | None:intergenic | 40.0% | |
| TTCAGTCGTTGTGAAAAGCT+TGG | - | tig0000790:7098-7117 | Msa1336030:CDS | 40.0% | |
| TATTTGGCAATACCTGAGCA+AGG | + | tig0000790:7169-7188 | None:intergenic | 40.0% | |
| ! | TGCTCAGGTATTGCCAAATA+TGG | - | tig0000790:7169-7188 | Msa1336030:intron | 40.0% |
| GCCGTTTCATATGATCTTTG+TGG | - | tig0000790:7212-7231 | Msa1336030:intron | 40.0% | |
| CCAAGAAAACTACAGAAAGG+GGG | + | tig0000790:7284-7303 | None:intergenic | 40.0% | |
| !! | TATTAGGTGGCTTTGACTCA+TGG | - | tig0000790:7347-7366 | Msa1336030:CDS | 40.0% |
| ! | TATTGGAGGACAATTTGCTC+AGG | - | tig0000790:7492-7511 | Msa1336030:intron | 40.0% |
| CTCAGGCTTAAAGAGAAATG+TGG | - | tig0000790:7509-7528 | Msa1336030:intron | 40.0% | |
| AGGCTTAAAGAGAAATGTGG+CGG | - | tig0000790:7512-7531 | Msa1336030:intron | 40.0% | |
| !! | AAAGAGAAATGTGGCGGATT+AGG | - | tig0000790:7518-7537 | Msa1336030:intron | 40.0% |
| TAATTGCAGTTGGCATGTCT+AGG | - | tig0000790:7585-7604 | Msa1336030:intron | 40.0% | |
| AATTGCAGTTGGCATGTCTA+GGG | - | tig0000790:7586-7605 | Msa1336030:intron | 40.0% | |
| GTACATGATCACTGCTTTCA+GGG | + | tig0000790:7765-7784 | None:intergenic | 40.0% | |
| TGTACATGATCACTGCTTTC+AGG | + | tig0000790:7766-7785 | None:intergenic | 40.0% | |
| AATCTATTGTGAAGGGGTTC+AGG | - | tig0000790:7885-7904 | Msa1336030:intron | 40.0% | |
| GAAGCGGTACTAAAGAAAGT+AGG | + | tig0000790:8024-8043 | None:intergenic | 40.0% | |
| GAGAGTGAGAGCTAGACAAT+TGG | + | tig0000790:288-307 | None:intergenic | 45.0% | |
| !! | TTGTACGAGCCTCTAAGATC+TGG | - | tig0000790:353-372 | Msa1336030:CDS | 45.0% |
| TTCATCGCCCAATCTCAGAT+CGG | - | tig0000790:391-410 | Msa1336030:intron | 45.0% | |
| ! | CGACATTTCCGATCTGAGAT+TGG | + | tig0000790:402-421 | None:intergenic | 45.0% |
| CTCAGATCGGAAATGTCGAT+CGG | - | tig0000790:404-423 | Msa1336030:intron | 45.0% | |
| !! | GCTTCTGCTGATTCCATCTA+TGG | - | tig0000790:476-495 | Msa1336030:intron | 45.0% |
| GTTCATCTTTGGTGAAGTCC+AGG | - | tig0000790:694-713 | Msa1336030:intron | 45.0% | |
| GGTGAAGTCCAGGAAACAAA+CGG | - | tig0000790:704-723 | Msa1336030:intron | 45.0% | |
| TTTGGCATCCGTTTGTTTCC+TGG | + | tig0000790:715-734 | None:intergenic | 45.0% | |
| !! | ATCTTGCTGTTCATACTCGG+AGG | - | tig0000790:1022-1041 | Msa1336030:intron | 45.0% |
| !! | AACCGTGGATGGATTGGTAA+AGG | - | tig0000790:1147-1166 | Msa1336030:intron | 45.0% |
| GAACACAATGTGCTCCTAAC+GGG | - | tig0000790:1173-1192 | Msa1336030:intron | 45.0% | |
| ! | AAGTTAATGGACCTGATGGG+TGG | - | tig0000790:1397-1416 | Msa1336030:intron | 45.0% |
| TTGTCCCCCCTTATCTGTAT+AGG | - | tig0000790:1606-1625 | Msa1336030:intron | 45.0% | |
| GGAACCTATACAGATAAGGG+GGG | + | tig0000790:1613-1632 | None:intergenic | 45.0% | |
| CCTTGATTGTCAACTACCAC+AGG | + | tig0000790:1634-1653 | None:intergenic | 45.0% | |
| CCTGTGGTAGTTGACAATCA+AGG | - | tig0000790:1631-1650 | Msa1336030:intron | 45.0% | |
| GAATGAAATGGAGAACGCCT+TGG | - | tig0000790:2479-2498 | Msa1336030:intron | 45.0% | |
| CGAAGTTAGTGTCATAGAGG+TGG | - | tig0000790:2620-2639 | Msa1336030:intron | 45.0% | |
| TTAGGTAGTCTGGGCATGTA+TGG | - | tig0000790:2741-2760 | Msa1336030:intron | 45.0% | |
| TAGGTAGTCTGGGCATGTAT+GGG | - | tig0000790:2742-2761 | Msa1336030:intron | 45.0% | |
| AATGAGTGTAGACTAGGTGG+AGG | - | tig0000790:2787-2806 | Msa1336030:intron | 45.0% | |
| TTGTAGGTGGAATTGGGCTT+TGG | - | tig0000790:3310-3329 | Msa1336030:intron | 45.0% | |
| !! | GTGGAATTGGGCTTTGGAAA+TGG | - | tig0000790:3316-3335 | Msa1336030:intron | 45.0% |
| !! | GGAATTGGGCTTTGGAAATG+GGG | - | tig0000790:3318-3337 | Msa1336030:intron | 45.0% |
| TCCCTGGGTATAGTATCAGT+GGG | - | tig0000790:3362-3381 | Msa1336030:intron | 45.0% | |
| ACCCACTGATACTATACCCA+GGG | + | tig0000790:3366-3385 | None:intergenic | 45.0% | |
| CATGTCATGCCATGCTAGTT+TGG | + | tig0000790:3629-3648 | None:intergenic | 45.0% | |
| CTCCTAATATAGGGTTTCCC+TGG | + | tig0000790:3730-3749 | None:intergenic | 45.0% | |
| TCCGAGGTAGAATGTTTGCA+AGG | - | tig0000790:3779-3798 | Msa1336030:intron | 45.0% | |
| GTTGTTGTCATGTGACCGAA+AGG | - | tig0000790:5234-5253 | Msa1336030:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | tig0000790:5307-5326 | Msa1336030:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | tig0000790:5310-5329 | Msa1336030:intron | 45.0% | |
| ! | GGTAACTGGATTTTCTGTCG+GGG | - | tig0000790:6069-6088 | Msa1336030:intron | 45.0% |
| ! | GTAACTGGATTTTCTGTCGG+GGG | - | tig0000790:6070-6089 | Msa1336030:intron | 45.0% |
| AGACCAATTAATCACCTGGC+TGG | + | tig0000790:6418-6437 | None:intergenic | 45.0% | |
| GCTCAGACCAATTAATCACC+TGG | + | tig0000790:6422-6441 | None:intergenic | 45.0% | |
| ! | GTCTGAGCATCGTACTAGAT+TGG | - | tig0000790:6434-6453 | Msa1336030:intron | 45.0% |
| ATAAAGTAACCAGCCGAGAC+CGG | + | tig0000790:6483-6502 | None:intergenic | 45.0% | |
| TCAGCAGTTCCTTACCTTGT+TGG | - | tig0000790:6868-6887 | Msa1336030:intron | 45.0% | |
| CAGCAGTTCCTTACCTTGTT+GGG | - | tig0000790:6869-6888 | Msa1336030:intron | 45.0% | |
| TAGTAGCGGTCAGAAAGCAA+CGG | - | tig0000790:7250-7269 | Msa1336030:intron | 45.0% | |
| ! | CCCCCTTTCTGTAGTTTTCT+TGG | - | tig0000790:7281-7300 | Msa1336030:intron | 45.0% |
| GCATATTCTACTACATGGGC+TGG | - | tig0000790:7551-7570 | Msa1336030:intron | 45.0% | |
| ! | ATTGTGAAGGGGTTCAGGTT+AGG | - | tig0000790:7890-7909 | Msa1336030:intron | 45.0% |
| ATGAGTCCAGCAGCATTATC+GGG | + | tig0000790:8152-8171 | None:intergenic | 45.0% | |
| CATGAGTCCAGCAGCATTAT+CGG | + | tig0000790:8153-8172 | None:intergenic | 45.0% | |
| !!! | TTATTTATTTTAATTACTAT+CGG | - | tig0000790:622-641 | Msa1336030:intron | 5.0% |
| !! | AAATATTATATAATTAAAAG+AGG | - | tig0000790:2860-2879 | Msa1336030:intron | 5.0% |
| !! | TACACTGACTCACTCCTCGT+GGG | + | tig0000790:312-331 | None:intergenic | 50.0% |
| ! | GCTGATTCCATCTATGGCTG+CGG | - | tig0000790:482-501 | Msa1336030:intron | 50.0% |
| ATCGCAGGCGAGTTCATCTT+TGG | - | tig0000790:683-702 | Msa1336030:intron | 50.0% | |
| ! | TTGCTGTTCATACTCGGAGG+AGG | - | tig0000790:1025-1044 | Msa1336030:intron | 50.0% |
| ! | GTAGGTTGAGCTTCAAACCG+TGG | - | tig0000790:1132-1151 | Msa1336030:CDS | 50.0% |
| GTTGAGCTTCAAACCGTGGA+TGG | - | tig0000790:1136-1155 | Msa1336030:CDS | 50.0% | |
| GCTTCAAACCGTGGATGGAT+TGG | - | tig0000790:1141-1160 | Msa1336030:CDS | 50.0% | |
| CAGATAAGGGGGGACAAAGA+AGG | + | tig0000790:1603-1622 | None:intergenic | 50.0% | |
| GATGACACAAGATCGCCAGA+AGG | + | tig0000790:1905-1924 | None:intergenic | 50.0% | |
| AGGTAGTCTGGGCATGTATG+GGG | - | tig0000790:2743-2762 | Msa1336030:intron | 50.0% | |
| AGTGTAGACTAGGTGGAGGA+TGG | - | tig0000790:2791-2810 | Msa1336030:intron | 50.0% | |
| GAGGATGGTCCAGTAGTTAG+AGG | - | tig0000790:2806-2825 | Msa1336030:intron | 50.0% | |
| TGGTCCAGTAGTTAGAGGTG+TGG | - | tig0000790:2811-2830 | Msa1336030:intron | 50.0% | |
| ! | GGTCCAGTAGTTAGAGGTGT+GGG | - | tig0000790:2812-2831 | Msa1336030:intron | 50.0% |
| ! | GTCCAGTAGTTAGAGGTGTG+GGG | - | tig0000790:2813-2832 | Msa1336030:intron | 50.0% |
| AACCCCACACCTCTAACTAC+TGG | + | tig0000790:2818-2837 | None:intergenic | 50.0% | |
| GTCCCTGGGTATAGTATCAG+TGG | - | tig0000790:3361-3380 | Msa1336030:intron | 50.0% | |
| GACCCACTGATACTATACCC+AGG | + | tig0000790:3367-3386 | None:intergenic | 50.0% | |
| CGAGATGTCACAGACACAAG+TGG | + | tig0000790:3510-3529 | None:intergenic | 50.0% | |
| !!! | TTCTTTTTTGGGGGCGTCAG+AGG | - | tig0000790:3574-3593 | Msa1336030:intron | 50.0% |
| GTATTCAGAGGATGTGTCCG+AGG | - | tig0000790:3763-3782 | Msa1336030:intron | 50.0% | |
| CAGAGAGCTACTTCTTGTCG+TGG | + | tig0000790:3818-3837 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | tig0000790:5218-5237 | None:intergenic | 50.0% | |
| GTCATGTGACCGAAAGGTCA+CGG | - | tig0000790:5240-5259 | Msa1336030:intron | 50.0% | |
| TCATGTGACCGAAAGGTCAC+GGG | - | tig0000790:5241-5260 | Msa1336030:intron | 50.0% | |
| GACTTGAACCCGTGACCTTT+CGG | + | tig0000790:5252-5271 | None:intergenic | 50.0% | |
| ! | AGAGATGGAGAGTTTGGGGT+AGG | - | tig0000790:5398-5417 | Msa1336030:intron | 50.0% |
| ! | TGGAGAGTTTGGGGTAGGAT+AGG | - | tig0000790:5403-5422 | Msa1336030:intron | 50.0% |
| ! | GGAGAGTTTGGGGTAGGATA+GGG | - | tig0000790:5404-5423 | Msa1336030:intron | 50.0% |
| TTGTGAGACAACGGGACAAC+TGG | + | tig0000790:5501-5520 | None:intergenic | 50.0% | |
| CATGCTTCAACAGCACCACA+AGG | + | tig0000790:5758-5777 | None:intergenic | 50.0% | |
| !! | GTGGTGCTGTTGAAGCATGT+AGG | - | tig0000790:5759-5778 | Msa1336030:intron | 50.0% |
| TGATGGAAACGACATGGGAG+TGG | - | tig0000790:6102-6121 | Msa1336030:intron | 50.0% | |
| TAATATGAACCGGTCTCGGC+TGG | - | tig0000790:6471-6490 | Msa1336030:intron | 50.0% | |
| ! | GGTCTCGGCTGGTTACTTTA+TGG | - | tig0000790:6482-6501 | Msa1336030:intron | 50.0% |
| TCAAACTCTGCTCCTTGCTC+AGG | - | tig0000790:7154-7173 | Msa1336030:intron | 50.0% | |
| GCTGACAAGCGATATTCACC+AGG | + | tig0000790:8116-8135 | None:intergenic | 50.0% | |
| !! | CTACACTGACTCACTCCTCG+TGG | + | tig0000790:313-332 | None:intergenic | 55.0% |
| GATTCCATCTATGGCTGCGG+TGG | - | tig0000790:485-504 | Msa1336030:intron | 55.0% | |
| GAATCCACCGCAGCCATAGA+TGG | + | tig0000790:492-511 | None:intergenic | 55.0% | |
| ! | ATGGACCTGATGGGTGGTCA+TGG | - | tig0000790:1403-1422 | Msa1336030:intron | 55.0% |
| ! | TGGACCTGATGGGTGGTCAT+GGG | - | tig0000790:1404-1423 | Msa1336030:intron | 55.0% |
| GTGGTCATGGGATCCTGAGA+AGG | - | tig0000790:1416-1435 | Msa1336030:intron | 55.0% | |
| TAGTCTGGGCATGTATGGGG+AGG | - | tig0000790:2746-2765 | Msa1336030:intron | 55.0% | |
| GGACGATACTGCCAATGTGC+AGG | - | tig0000790:3083-3102 | Msa1336030:intron | 55.0% | |
| CAGTGGGTCTGTTGTTGCAC+AGG | - | tig0000790:3378-3397 | Msa1336030:intron | 55.0% | |
| CACGCTGTATCAGATGCCGA+TGG | - | tig0000790:3839-3858 | Msa1336030:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | tig0000790:5253-5272 | Msa1336030:intron | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | tig0000790:5350-5369 | None:intergenic | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | tig0000790:5351-5370 | None:intergenic | 55.0% | |
| TGGAAACGACATGGGAGTGG+AGG | - | tig0000790:6105-6124 | Msa1336030:intron | 55.0% | |
| GGAAACGACATGGGAGTGGA+GGG | - | tig0000790:6106-6125 | Msa1336030:intron | 55.0% | |
| GCTACTCCCGATAATGCTGC+TGG | - | tig0000790:8143-8162 | Msa1336030:five_prime_UTR | 55.0% | |
| AGCTCTCACTCTCACCCACG+AGG | - | tig0000790:295-314 | Msa1336030:CDS | 60.0% | |
| ! | TGGCTGCGGTGGATTCGTTC+AGG | - | tig0000790:496-515 | Msa1336030:intron | 60.0% |
| GGATCCCATGACCACCCATC+AGG | + | tig0000790:1411-1430 | None:intergenic | 60.0% | |
| GGTAGAGTTGTGGGAGCTGC+AGG | - | tig0000790:1818-1837 | Msa1336030:intron | 60.0% | |
| AGAGTTGTGGGAGCTGCAGG+CGG | - | tig0000790:1821-1840 | Msa1336030:intron | 60.0% | |
| !! | CACTTCCTGCACTGGCTGTC+AGG | - | tig0000790:4688-4707 | Msa1336030:CDS | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | tig0000790:5207-5226 | Msa1336030:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | tig0000790:5323-5342 | Msa1336030:intron | 60.0% |
| CATATGCAGGGTCCGGGAAG+GGG | + | tig0000790:5338-5357 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | tig0000790:5339-5358 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | tig0000790:5338-5357 | Msa1336030:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | tig0000790:5339-5358 | Msa1336030:intron | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | tig0000790:5355-5374 | Msa1336030:CDS | 60.0% | |
| GTCGGGGGTCGTGTAGTTGA+TGG | - | tig0000790:6085-6104 | Msa1336030:intron | 60.0% | |
| ! | TTGGGTCACTTGCTGCGCTG+TGG | - | tig0000790:6699-6718 | Msa1336030:intron | 60.0% |
| ! | TGGGTCACTTGCTGCGCTGT+GGG | - | tig0000790:6700-6719 | Msa1336030:intron | 60.0% |
| CTGCTCCTGACAGCCAGTGC+AGG | + | tig0000790:4696-4715 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | tig0000790:5325-5344 | None:intergenic | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | tig0000790:5340-5359 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | tig0000790:5344-5363 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | tig0000790:5345-5364 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | tig0000790:5356-5375 | Msa1336030:CDS | 65.0% | |
| ! | GGGTCACTTGCTGCGCTGTG+GGG | - | tig0000790:6701-6720 | Msa1336030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000790 | gene | 278 | 8235 | 278 | ID=Msa1336030;Name=Msa1336030 |
| tig0000790 | mRNA | 278 | 8235 | 278 | ID=Msa1336030-mRNA-1;Parent=Msa1336030;Name=Msa1336030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=138|0.69|0.64|0.71|0.92|1|14|0|459 |
| tig0000790 | exon | 278 | 406 | 278 | ID=Msa1336030-mRNA-1:exon:547;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 1083 | 1160 | 1083 | ID=Msa1336030-mRNA-1:exon:546;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 1493 | 1564 | 1493 | ID=Msa1336030-mRNA-1:exon:545;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 2315 | 2443 | 2315 | ID=Msa1336030-mRNA-1:exon:544;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 4096 | 4211 | 4096 | ID=Msa1336030-mRNA-1:exon:543;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 4623 | 4782 | 4623 | ID=Msa1336030-mRNA-1:exon:542;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 5114 | 5197 | 5114 | ID=Msa1336030-mRNA-1:exon:541;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 5347 | 5408 | 5347 | ID=Msa1336030-mRNA-1:exon:540;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 6539 | 6708 | 6539 | ID=Msa1336030-mRNA-1:exon:539;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 6821 | 6885 | 6821 | ID=Msa1336030-mRNA-1:exon:538;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 7076 | 7132 | 7076 | ID=Msa1336030-mRNA-1:exon:537;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 7291 | 7377 | 7291 | ID=Msa1336030-mRNA-1:exon:536;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 7758 | 7823 | 7758 | ID=Msa1336030-mRNA-1:exon:535;Parent=Msa1336030-mRNA-1 |
| tig0000790 | exon | 7996 | 8235 | 7996 | ID=Msa1336030-mRNA-1:exon:534;Parent=Msa1336030-mRNA-1 |
| tig0000790 | five_prime_UTR | 8098 | 8235 | 8098 | ID=Msa1336030-mRNA-1:five_prime_utr;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 7996 | 8097 | 7996 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 7758 | 7823 | 7758 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 7291 | 7377 | 7291 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 7076 | 7132 | 7076 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 6821 | 6885 | 6821 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 6539 | 6708 | 6539 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 5347 | 5408 | 5347 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 5114 | 5197 | 5114 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 4623 | 4782 | 4623 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 4096 | 4211 | 4096 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 2315 | 2443 | 2315 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 1493 | 1564 | 1493 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 1083 | 1160 | 1083 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| tig0000790 | CDS | 278 | 406 | 278 | ID=Msa1336030-mRNA-1:cds;Parent=Msa1336030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
