Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439890 | XP_013469568.1 | 92.081 | 442 | 13 | 3 | 2 | 421 | 131 | 572 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439890 | sp|Q9M9G6|CTF64_ARATH | 36.342 | 421 | 187 | 14 | 2 | 418 | 114 | 457 | 2.13e-46 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439890 | A0A072VPL6 | 92.081 | 442 | 13 | 3 | 2 | 421 | 131 | 572 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1411400 | Msa1439890 | 0.995806 | 4.270113e-220 | -8.615850e-47 |
| Msa0125370 | Msa1439890 | 0.843520 | 1.332250e-58 | -8.615850e-47 |
| Msa0177700 | Msa1439890 | 0.800449 | 1.433707e-48 | -8.615850e-47 |
| Msa0178030 | Msa1439890 | 0.994339 | 1.894568e-206 | -8.615850e-47 |
| Msa0882440 | Msa1439890 | 0.821642 | 3.622346e-53 | -8.615850e-47 |
| Msa0947530 | Msa1439890 | 0.820380 | 7.072299e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439890 | MtrunA17_Chr1g0201001 | 92.081 | 442 | 13 | 3 | 2 | 421 | 131 | 572 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439890 | AT1G71800.1 | 36.342 | 421 | 187 | 14 | 2 | 418 | 114 | 457 | 2.17e-47 | 169 |
Find 171 sgRNAs with CRISPR-Local
Find 491 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTCCTCTAGATTTCA+TGG | 0.180877 | tig0028900:-46064 | Msa1439890:five_prime_UTR |
| CCTGCATTTGTTGTCATTCC+TGG | 0.191571 | tig0028900:+44556 | None:intergenic |
| TAGCTGACTCCTGGACATTT+TGG | 0.227036 | tig0028900:+44206 | None:intergenic |
| GATGGTCGTGTAAAGGATTC+TGG | 0.241286 | tig0028900:+41037 | None:intergenic |
| TTGGCCAGATGCAAAGTTAA+AGG | 0.247257 | tig0028900:+44225 | None:intergenic |
| CTTCAGGGTTATGAAATTAA+TGG | 0.257732 | tig0028900:-45585 | Msa1439890:five_prime_UTR |
| ATGCAGCAGCTATTTATTTC+CGG | 0.258112 | tig0028900:-39985 | Msa1439890:three_prime_UTR |
| ACTTGGCCTTCTTGAATATA+AGG | 0.269471 | tig0028900:+42060 | None:intergenic |
| CTCGCCAGCTGTTGCTTTCA+AGG | 0.272367 | tig0028900:-44052 | Msa1439890:CDS |
| AAGTGCTCGCAGGAATCTTC+AGG | 0.286972 | tig0028900:-45601 | Msa1439890:five_prime_UTR |
| TTTGATCTGAAACTTGTCTA+AGG | 0.312889 | tig0028900:+42196 | None:intergenic |
| TTAGTTACTGATAGAGAAAC+TGG | 0.317848 | tig0028900:-45675 | Msa1439890:five_prime_UTR |
| GGAATATTTACTACTACTTT+TGG | 0.323679 | tig0028900:+41105 | None:intergenic |
| TTCAATCTAGTGAGCTTTGA+TGG | 0.338386 | tig0028900:+41019 | None:intergenic |
| TCCCAACATCGCACTGTCTT+TGG | 0.343999 | tig0028900:-46030 | Msa1439890:intron |
| GATTTCGCGGAGAATGATAA+AGG | 0.353032 | tig0028900:-45546 | Msa1439890:five_prime_UTR |
| ATTAGCATTTGATGTAGATT+AGG | 0.355203 | tig0028900:-39891 | Msa1439890:three_prime_UTR |
| ATGACCTGTTGTTGCTGCTC+TGG | 0.359697 | tig0028900:+40078 | None:intergenic |
| GTTTCTGTCAAACCATCTTC+CGG | 0.360423 | tig0028900:+39932 | None:intergenic |
| GTGGCTGGTCTACCTCCTTA+TGG | 0.363208 | tig0028900:-42111 | Msa1439890:CDS |
| CCAACTCAATTTCCGGAAGA+TGG | 0.368592 | tig0028900:-39944 | Msa1439890:three_prime_UTR |
| GACGGAAGGGGTCTCTCTGC+TGG | 0.371801 | tig0028900:-40995 | Msa1439890:CDS |
| TGATCCTTTAACTTTGCATC+TGG | 0.378313 | tig0028900:-44229 | Msa1439890:CDS |
| GGCATCCCGTCAAATCAAAA+TGG | 0.382688 | tig0028900:-44279 | Msa1439890:CDS |
| GAGTGCCGCACATCTGCTTT+AGG | 0.383249 | tig0028900:+40899 | None:intergenic |
| TGAGATAATCTCAGAGCTTA+AGG | 0.385361 | tig0028900:-44181 | Msa1439890:intron |
| TGATCTCGTACACGCTCATT+TGG | 0.386751 | tig0028900:+39761 | None:intergenic |
| GCTGGCCCCTCCATGCCATC+TGG | 0.387717 | tig0028900:-41187 | Msa1439890:CDS |
| TTCCAACGCTCTTGAGGATT+GGG | 0.393799 | tig0028900:-41128 | Msa1439890:CDS |
| CTGCTCCAGGCTGTACAAAA+TGG | 0.394055 | tig0028900:+41938 | None:intergenic |
| CGTTAGGCCTCCATTTCAAC+AGG | 0.395720 | tig0028900:-41860 | Msa1439890:CDS |
| TCTGAAACTTGTCTAAGGTT+TGG | 0.398069 | tig0028900:+42201 | None:intergenic |
| GTTGAATTTGCCTGTTGAAA+TGG | 0.398282 | tig0028900:+41850 | None:intergenic |
| CTTCCAACGCTCTTGAGGAT+TGG | 0.405295 | tig0028900:-41129 | Msa1439890:CDS |
| GATCTCGCTTAAGCGCTTGT+TGG | 0.409240 | tig0028900:+40049 | None:intergenic |
| GAAACGAGGCATGCGGTTGC+TGG | 0.411669 | tig0028900:+41818 | None:intergenic |
| GGACAGAGCAAGTTGCAGTT+TGG | 0.411864 | tig0028900:-42090 | Msa1439890:CDS |
| GTAGTAAAGAGGAAGAAGAT+TGG | 0.428537 | tig0028900:-46102 | Msa1439890:five_prime_UTR |
| CATGACAGTTGCAGCTGTTA+CGG | 0.434365 | tig0028900:+44329 | None:intergenic |
| TGCTACAGAGGAACAGCTTA+AGG | 0.435110 | tig0028900:-45886 | Msa1439890:five_prime_UTR |
| TGGGATGATCCGTTGGAAAC+AGG | 0.435584 | tig0028900:+40959 | None:intergenic |
| TTACGGATTCTGTGAGTATA+CGG | 0.438452 | tig0028900:-45640 | Msa1439890:five_prime_UTR |
| CTACAACAACCAGTACTTGT+TGG | 0.440488 | tig0028900:-41796 | Msa1439890:CDS |
| CTAGGAACTGAAGGGTTATG+AGG | 0.441421 | tig0028900:+42027 | None:intergenic |
| TTCTCTTCTTCGTCGAAGAT+CGG | 0.441601 | tig0028900:-46159 | Msa1439890:five_prime_UTR |
| AGCAGCTCAACATCAACCTA+TGG | 0.442434 | tig0028900:-44364 | Msa1439890:CDS |
| GCGGATTCCCCTTGAACAGC+TGG | 0.443023 | tig0028900:+44390 | None:intergenic |
| GAAACAAAACATACCATTTG+AGG | 0.444720 | tig0028900:+42473 | None:intergenic |
| AGTTACCTAAAACTGATAAC+AGG | 0.450631 | tig0028900:+45843 | None:intergenic |
| AAAGCAACAGCTGGCGAGAC+AGG | 0.453850 | tig0028900:+44057 | None:intergenic |
| TGCAACTTGCTCTGTCCATA+AGG | 0.455902 | tig0028900:+42096 | None:intergenic |
| GCTCTAGGTGGTGCTCAGAC+TGG | 0.462210 | tig0028900:-44300 | Msa1439890:CDS |
| CTATTTATTTCCGGCGAATG+TGG | 0.469691 | tig0028900:-39976 | Msa1439890:three_prime_UTR |
| ACCAAAGACAGTGCGATGTT+GGG | 0.470255 | tig0028900:+46029 | None:intergenic |
| TTGCAGTCTTTAATGAATGA+AGG | 0.472823 | tig0028900:-42171 | Msa1439890:CDS |
| AAATTACTCTGCCCTGCTCC+AGG | 0.474984 | tig0028900:+41925 | None:intergenic |
| AATAATAATAATAATTATGC+TGG | 0.477702 | tig0028900:-39704 | Msa1439890:three_prime_UTR |
| GGAATTCTGGGCTGCAGAGG+AGG | 0.480025 | tig0028900:+41982 | None:intergenic |
| GCCACCAGAGCAGCAACAAC+AGG | 0.482149 | tig0028900:-40082 | Msa1439890:CDS |
| TATGAGGGAGAGTGCTGACT+TGG | 0.485477 | tig0028900:+42043 | None:intergenic |
| TACCAAAGACAGTGCGATGT+TGG | 0.485985 | tig0028900:+46028 | None:intergenic |
| TGTCTCACATAATATTCATA+TGG | 0.488387 | tig0028900:-41764 | Msa1439890:intron |
| GCAGGCATCCCAGCTGTTCA+AGG | 0.491886 | tig0028900:-44399 | Msa1439890:CDS |
| AACAGCTTAAGGAAATTTGT+CGG | 0.492117 | tig0028900:-45875 | Msa1439890:five_prime_UTR |
| TCACAGAATCCGTAACCCTT+AGG | 0.492474 | tig0028900:+45648 | None:intergenic |
| ACATTGGTTCCGACTGTGGC+TGG | 0.494341 | tig0028900:-42126 | Msa1439890:CDS |
| TAGAGAAACTGGGAAACCTA+AGG | 0.494630 | tig0028900:-45664 | Msa1439890:five_prime_UTR |
| ACCTGTTGTTGCTGCTCTGG+TGG | 0.497396 | tig0028900:+40081 | None:intergenic |
| ATTTCGCGGAGAATGATAAA+GGG | 0.497809 | tig0028900:-45545 | Msa1439890:five_prime_UTR |
| TATCTCAGATAGCTGACTCC+TGG | 0.499165 | tig0028900:+44197 | None:intergenic |
| GAATGATAGAAATAAAGATC+AGG | 0.504557 | tig0028900:-45523 | Msa1439890:intron |
| ACAGCTTAAGGAAATTTGTC+GGG | 0.507959 | tig0028900:-45874 | Msa1439890:five_prime_UTR |
| AGGGATGGTCAACCCTCAAA+TGG | 0.511686 | tig0028900:-42486 | Msa1439890:intron |
| CGGAACGGAGAGTGTGGTGG+TGG | 0.512595 | tig0028900:-46139 | Msa1439890:five_prime_UTR |
| ATGAGCTACTTCCGAGAACA+TGG | 0.512604 | tig0028900:+40939 | None:intergenic |
| GGCAAAGAACTCAATTGCTC+TGG | 0.513370 | tig0028900:+40102 | None:intergenic |
| AACGGATCATCCCATGTTCT+CGG | 0.513720 | tig0028900:-40950 | Msa1439890:CDS |
| GAGCTTTGATGGTCGTGTAA+AGG | 0.516650 | tig0028900:+41030 | None:intergenic |
| TTGCAGGCTCAGATAATGCT+AGG | 0.516928 | tig0028900:-42506 | Msa1439890:intron |
| AAACAAAACATACCATTTGA+GGG | 0.517549 | tig0028900:+42474 | None:intergenic |
| GCTTTAGGAACTACAGGTAC+AGG | 0.520667 | tig0028900:+40914 | None:intergenic |
| TCAATTACGTGTTGATTTCG+CGG | 0.523375 | tig0028900:-45559 | Msa1439890:five_prime_UTR |
| TTCATTCATTAAAGACTGCA+AGG | 0.524671 | tig0028900:+42173 | None:intergenic |
| TGCATCTGGCCAAAATGTCC+AGG | 0.526981 | tig0028900:-44215 | Msa1439890:CDS |
| TCTCAGTTATTTAGCAAGGA+AGG | 0.527111 | tig0028900:-41160 | Msa1439890:CDS |
| ACTGGGAAACCTAAGGGTTA+CGG | 0.530546 | tig0028900:-45657 | Msa1439890:five_prime_UTR |
| TGTCTAAACATTTATTGTTG+CGG | 0.530996 | tig0028900:-39793 | Msa1439890:three_prime_UTR |
| CTCTGATCAACAATCTTCAC+AGG | 0.531715 | tig0028900:-40879 | Msa1439890:intron |
| ACATCTGCTTTAGGAACTAC+AGG | 0.532755 | tig0028900:+40908 | None:intergenic |
| CCATCTTCCGGAAATTGAGT+TGG | 0.536318 | tig0028900:+39944 | None:intergenic |
| GTTGAGCTTCCAACAAGTAC+TGG | 0.536853 | tig0028900:+41787 | None:intergenic |
| TTCAAGGCCACAGTTGCCCA+AGG | 0.536874 | tig0028900:-44036 | Msa1439890:CDS |
| ACGGAAGGGGTCTCTCTGCT+GGG | 0.537514 | tig0028900:-40994 | Msa1439890:CDS |
| GAATTTACGGTCAATTGACT+AGG | 0.537953 | tig0028900:+42009 | None:intergenic |
| TGAGTATACGGATGAAGAAA+CGG | 0.542840 | tig0028900:-45628 | Msa1439890:five_prime_UTR |
| TTGACACCTTATATTCAAGA+AGG | 0.544580 | tig0028900:-42066 | Msa1439890:CDS |
| AAAACAGACTCCACATCAGA+TGG | 0.548177 | tig0028900:+40150 | None:intergenic |
| GGTGGTGGAACAAACGCTTA+TGG | 0.549732 | tig0028900:-46124 | Msa1439890:five_prime_UTR |
| GCAAAACAGACCACATTCGC+CGG | 0.550798 | tig0028900:+39966 | None:intergenic |
| GTAAAGAGGAAGAAGATTGG+AGG | 0.552792 | tig0028900:-46099 | Msa1439890:five_prime_UTR |
| AAGGAAATTTGTCGGGAGGT+TGG | 0.553535 | tig0028900:-45867 | Msa1439890:five_prime_UTR |
| GTCAATTGACTAGGAACTGA+AGG | 0.554552 | tig0028900:+42018 | None:intergenic |
| TAGACCTTCCAACGCTCTTG+AGG | 0.555033 | tig0028900:-41134 | Msa1439890:CDS |
| CAGGCATCCCAGCTGTTCAA+GGG | 0.559124 | tig0028900:-44398 | Msa1439890:CDS |
| CTGAGAAACACCAGATGGCA+TGG | 0.559268 | tig0028900:+41177 | None:intergenic |
| GATCTTCGACGAAGAAGAGA+AGG | 0.559351 | tig0028900:+46161 | None:intergenic |
| CGGATTCCCCTTGAACAGCT+GGG | 0.559565 | tig0028900:+44391 | None:intergenic |
| GTGGCCTTGAAAGCAACAGC+TGG | 0.561370 | tig0028900:+44048 | None:intergenic |
| AAAGATCCTCAGAAACAAGC+AGG | 0.562950 | tig0028900:-44417 | Msa1439890:intron |
| GGCCCAATCCTCAAGAGCGT+TGG | 0.563373 | tig0028900:+41126 | None:intergenic |
| CACTAGATTGAATGACGGAA+GGG | 0.565314 | tig0028900:-41008 | Msa1439890:CDS |
| GAAACACCAGATGGCATGGA+GGG | 0.566701 | tig0028900:+41181 | None:intergenic |
| GAGAACATGGGATGATCCGT+TGG | 0.567413 | tig0028900:+40952 | None:intergenic |
| ACTGTCATGACTGCAGCTCT+AGG | 0.569230 | tig0028900:-44315 | Msa1439890:CDS |
| TGGTTGCTTTGATGATGTTG+AGG | 0.572185 | tig0028900:+41958 | None:intergenic |
| GGTTGCTTTGATGATGTTGA+GGG | 0.575174 | tig0028900:+41959 | None:intergenic |
| TGTTCCTCTGTAGCATCATA+CGG | 0.577567 | tig0028900:+45894 | None:intergenic |
| TGCAGGCTCAGATAATGCTA+GGG | 0.580236 | tig0028900:-42505 | Msa1439890:intron |
| TTAATGAATGAAGGCCACCT+TGG | 0.580341 | tig0028900:-42162 | Msa1439890:CDS |
| GCAAACATTGGTTCCGACTG+TGG | 0.580561 | tig0028900:-42130 | Msa1439890:CDS |
| TAGGAACTGAAGGGTTATGA+GGG | 0.582212 | tig0028900:+42028 | None:intergenic |
| AGAGAAACTGGGAAACCTAA+GGG | 0.583753 | tig0028900:-45663 | Msa1439890:five_prime_UTR |
| CTGTTGAAATGGAGGCCTAA+CGG | 0.584880 | tig0028900:+41861 | None:intergenic |
| TAATATACAAGCGACAGACT+TGG | 0.586624 | tig0028900:+39910 | None:intergenic |
| ATTGCAGCTTCCATCTGATG+TGG | 0.588345 | tig0028900:-40160 | Msa1439890:intron |
| AAACGCTTATGGTAGTAAAG+AGG | 0.588404 | tig0028900:-46113 | Msa1439890:five_prime_UTR |
| AAAAGGGCCTTGGGCAACTG+TGG | 0.590501 | tig0028900:+44029 | None:intergenic |
| CCATGAAATCTAGAGGAAGA+AGG | 0.592393 | tig0028900:+46064 | None:intergenic |
| GGCTCAGATAATGCTAGGGA+TGG | 0.592888 | tig0028900:-42501 | Msa1439890:CDS |
| CCAGGAATGACAACAAATGC+AGG | 0.593867 | tig0028900:-44556 | Msa1439890:intron |
| GCAGCTCAACATCAACCTAT+GGG | 0.597807 | tig0028900:-44363 | Msa1439890:CDS |
| TGGAGTAGAGAATACAGGCA+TGG | 0.598088 | tig0028900:-41071 | Msa1439890:intron |
| TGTTTCTCAGTTATTTAGCA+AGG | 0.599326 | tig0028900:-41164 | Msa1439890:CDS |
| AGTGCTCGCAGGAATCTTCA+GGG | 0.600783 | tig0028900:-45600 | Msa1439890:five_prime_UTR |
| TTGCTTTGATGATGTTGAGG+GGG | 0.603891 | tig0028900:+41961 | None:intergenic |
| ACTAGATTGAATGACGGAAG+GGG | 0.604842 | tig0028900:-41007 | Msa1439890:CDS |
| TCACTAGATTGAATGACGGA+AGG | 0.606926 | tig0028900:-41009 | Msa1439890:CDS |
| AAACGGCGTTAAGTGCTCGC+AGG | 0.607116 | tig0028900:-45611 | Msa1439890:five_prime_UTR |
| AAACACCAGATGGCATGGAG+GGG | 0.611101 | tig0028900:+41182 | None:intergenic |
| ATCTTCGACGAAGAAGAGAA+GGG | 0.613914 | tig0028900:+46162 | None:intergenic |
| AGGCATCCCAGCTGTTCAAG+GGG | 0.622558 | tig0028900:-44397 | Msa1439890:CDS |
| GAATTTGCCTGTTGAAATGG+AGG | 0.624335 | tig0028900:+41853 | None:intergenic |
| TGGTCAGACTCAGCAAACAT+TGG | 0.627121 | tig0028900:-42142 | Msa1439890:CDS |
| ACAGTGCGATGTTGGGACTG+AGG | 0.628763 | tig0028900:+46036 | None:intergenic |
| GGAGGTAGACCAGCCACAGT+CGG | 0.632403 | tig0028900:+42117 | None:intergenic |
| CAATCCTCAAGAGCGTTGGA+AGG | 0.638608 | tig0028900:+41130 | None:intergenic |
| GCTTAAGGAAATTTGTCGGG+AGG | 0.640077 | tig0028900:-45871 | Msa1439890:five_prime_UTR |
| GGGAATGGCTACACACAACA+AGG | 0.640493 | tig0028900:-44081 | Msa1439890:CDS |
| ACGGCAATATGAAGACCCAT+AGG | 0.645378 | tig0028900:+44348 | None:intergenic |
| GAAGATCGGAACGGAGAGTG+TGG | 0.646474 | tig0028900:-46145 | Msa1439890:five_prime_UTR |
| AAGCTCACTAGATTGAATGA+CGG | 0.654821 | tig0028900:-41013 | Msa1439890:CDS |
| GGAGCAGCCATGAAATCTAG+AGG | 0.660272 | tig0028900:+46057 | None:intergenic |
| TCAGACGTACCTGTTTCCAA+CGG | 0.662727 | tig0028900:-40968 | Msa1439890:CDS |
| TTGATGTTGAGCTGCTTGAG+CGG | 0.668086 | tig0028900:+44371 | None:intergenic |
| GATCGGAACGGAGAGTGTGG+TGG | 0.668884 | tig0028900:-46142 | Msa1439890:five_prime_UTR |
| TCAATTGACTAGGAACTGAA+GGG | 0.671116 | tig0028900:+42019 | None:intergenic |
| AGAAACACCAGATGGCATGG+AGG | 0.671498 | tig0028900:+41180 | None:intergenic |
| TGAGCTACTTCCGAGAACAT+GGG | 0.671623 | tig0028900:+40940 | None:intergenic |
| AACTTGCTCTGTCCATAAGG+AGG | 0.678416 | tig0028900:+42099 | None:intergenic |
| TTCTTCGTCGAAGATCGGAA+CGG | 0.680244 | tig0028900:-46154 | Msa1439890:five_prime_UTR |
| ATGCAGCACTCATAACACAC+TGG | 0.680734 | tig0028900:-40024 | Msa1439890:exon |
| TACTGGTTGTTGTAGAAACG+AGG | 0.682430 | tig0028900:+41804 | None:intergenic |
| AATAACTGAGAAACACCAGA+TGG | 0.684873 | tig0028900:+41172 | None:intergenic |
| TGTTGTAGAAACGAGGCATG+CGG | 0.697168 | tig0028900:+41811 | None:intergenic |
| GTCATGACTGCAGCTCTAGG+TGG | 0.698596 | tig0028900:-44312 | Msa1439890:CDS |
| TAGTTACTGATAGAGAAACT+GGG | 0.706301 | tig0028900:-45674 | Msa1439890:five_prime_UTR |
| TAGTTCCTAAAGCAGATGTG+CGG | 0.707036 | tig0028900:-40904 | Msa1439890:CDS |
| GTTGCTTTGATGATGTTGAG+GGG | 0.707097 | tig0028900:+41960 | None:intergenic |
| CATACCGTATGATGCTACAG+AGG | 0.722663 | tig0028900:-45898 | Msa1439890:five_prime_UTR |
| TTTGCTGAGTCTGACCAAGG+TGG | 0.729027 | tig0028900:+42148 | None:intergenic |
| ATGTTTGCTGAGTCTGACCA+AGG | 0.742426 | tig0028900:+42145 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTATGTTAAAAAA+AGG | - | tig0028900:40079-40098 | Msa1439890:CDS | 10.0% |
| !!! | AAAAAATTGATTTTTTATGT+TGG | - | tig0028900:40144-40163 | Msa1439890:CDS | 10.0% |
| !!! | AAAAATTGATTTTTTATGTT+GGG | - | tig0028900:40145-40164 | Msa1439890:CDS | 10.0% |
| !! | AAACTAAATCATATATAAAT+AGG | + | tig0028900:43273-43292 | None:intergenic | 10.0% |
| !!! | TGTTAATCTTTTTAATAAAT+TGG | - | tig0028900:45108-45127 | Msa1439890:intron | 10.0% |
| !! | AATAATAATAATAATTATGC+TGG | - | tig0028900:46171-46190 | Msa1439890:five_prime_UTR | 10.0% |
| !!! | TATTGATAACTCAATTTAAT+TGG | + | tig0028900:41076-41095 | None:intergenic | 15.0% |
| !! | AAATTGAAAAATATGAACAA+AGG | + | tig0028900:42301-42320 | None:intergenic | 15.0% |
| !! | TAATACAATTTACATTTACT+AGG | - | tig0028900:42577-42596 | Msa1439890:intron | 15.0% |
| !! | AAAACTATTATATAGATAGA+TGG | + | tig0028900:42955-42974 | None:intergenic | 15.0% |
| !!! | TATATATGATTTAGTTTCAT+TGG | - | tig0028900:43276-43295 | Msa1439890:intron | 15.0% |
| !! | AAACATTAATCTCTAAATAT+AGG | + | tig0028900:43303-43322 | None:intergenic | 15.0% |
| !!! | TTTAATTTATATTTTAACCG+CGG | - | tig0028900:44298-44317 | Msa1439890:CDS | 15.0% |
| !!! | TTTTTTTTTTGAGAAAGTAA+TGG | - | tig0028900:44539-44558 | Msa1439890:intron | 15.0% |
| !! | TTACTACTACTTAAATAATT+AGG | - | tig0028900:45147-45166 | Msa1439890:intron | 15.0% |
| !! | TAAGAACAAAAACAAAAGAT+AGG | + | tig0028900:39887-39906 | None:intergenic | 20.0% |
| !!! | TGTTATAAATTCCTTTGTTT+GGG | + | tig0028900:40574-40593 | None:intergenic | 20.0% |
| !! | ATGTTATAAATTCCTTTGTT+TGG | + | tig0028900:40575-40594 | None:intergenic | 20.0% |
| !!! | TGAAGGATAATTATTTTGTA+AGG | + | tig0028900:40826-40845 | None:intergenic | 20.0% |
| !!! | ATATGAAATTGATTTCACAT+TGG | - | tig0028900:41014-41033 | Msa1439890:CDS | 20.0% |
| !! | TAACGGTAAAAAGAAAAAAA+AGG | + | tig0028900:41438-41457 | None:intergenic | 20.0% |
| !!! | ATAGTTTTATACCTGAAAAA+GGG | + | tig0028900:41865-41884 | None:intergenic | 20.0% |
| !!! | TATAGTTTTATACCTGAAAA+AGG | + | tig0028900:41866-41885 | None:intergenic | 20.0% |
| !! | CCTATATTTACAATAATCTT+GGG | + | tig0028900:42425-42444 | None:intergenic | 20.0% |
| !! | CCAAGATTATTGTAAATATA+GGG | - | tig0028900:42423-42442 | Msa1439890:intron | 20.0% |
| !! | TTGGAATTAGTATTAGTATT+GGG | + | tig0028900:42702-42721 | None:intergenic | 20.0% |
| !! | ATTCGTCTATTTATAGAATA+GGG | - | tig0028900:43109-43128 | Msa1439890:intron | 20.0% |
| !! | ATAACAACAAAATCTAACTT+GGG | + | tig0028900:43169-43188 | None:intergenic | 20.0% |
| !! | ACTTTATTGAATATAGAGTT+TGG | - | tig0028900:43215-43234 | Msa1439890:intron | 20.0% |
| !! | CTTTATTGAATATAGAGTTT+GGG | - | tig0028900:43216-43235 | Msa1439890:intron | 20.0% |
| !!! | TTACATTTTTTTGTAATTGC+AGG | - | tig0028900:43353-43372 | Msa1439890:intron | 20.0% |
| !! | TGGAATTTAATCAAGAAAAA+AGG | + | tig0028900:43432-43451 | None:intergenic | 20.0% |
| !!! | TTGATTAAATTCCATTTTCA+TGG | - | tig0028900:43438-43457 | Msa1439890:intron | 20.0% |
| !! | AAAATAACACAAGCAAAATT+TGG | + | tig0028900:44163-44182 | None:intergenic | 20.0% |
| !! | CTAACTAATAATTGTTATCT+TGG | - | tig0028900:45191-45210 | Msa1439890:intron | 20.0% |
| !! | GAGATATTAAATTCTAATGT+AGG | - | tig0028900:45276-45295 | Msa1439890:intron | 20.0% |
| !!! | GATATTTTGAATGAATGATT+TGG | - | tig0028900:45350-45369 | Msa1439890:intron | 20.0% |
| !! | CAGCTTATAAAAATTATAAG+TGG | + | tig0028900:45405-45424 | None:intergenic | 20.0% |
| !! | TTTACGACAATTTTTGTAGT+TGG | - | tig0028900:39951-39970 | Msa1439890:three_prime_UTR | 25.0% |
| !! | TTACGACAATTTTTGTAGTT+GGG | - | tig0028900:39952-39971 | Msa1439890:three_prime_UTR | 25.0% |
| !! | TTTTTATGTGTTTGTAGTTG+TGG | - | tig0028900:40103-40122 | Msa1439890:CDS | 25.0% |
| !! | TTTTATGTGTTTGTAGTTGT+GGG | - | tig0028900:40104-40123 | Msa1439890:CDS | 25.0% |
| ! | GAATGATAGAAATAAAGATC+AGG | - | tig0028900:40352-40371 | Msa1439890:intron | 25.0% |
| ! | ATAAAGATCAGGTATATTGT+TGG | - | tig0028900:40363-40382 | Msa1439890:intron | 25.0% |
| !! | ATCTTTGCATTGTTTTCTTT+TGG | - | tig0028900:40409-40428 | Msa1439890:intron | 25.0% |
| !! | TCTTTGCATTGTTTTCTTTT+GGG | - | tig0028900:40410-40429 | Msa1439890:intron | 25.0% |
| ! | GTATGTCTTTACAAAAAGTT+AGG | + | tig0028900:40657-40676 | None:intergenic | 25.0% |
| ! | ATCCTTCATTAAAGTTTCAA+TGG | - | tig0028900:40838-40857 | Msa1439890:intron | 25.0% |
| ! | TACCATTGAAACTTTAATGA+AGG | + | tig0028900:40843-40862 | None:intergenic | 25.0% |
| !!! | TCTATTATTTTGTAACAGCT+TGG | + | tig0028900:41105-41124 | None:intergenic | 25.0% |
| !!! | TTGTATGTTTTAGATTTCCT+TGG | - | tig0028900:41975-41994 | Msa1439890:CDS | 25.0% |
| ! | AATAACTAAGATAGTTGTAG+TGG | - | tig0028900:42160-42179 | Msa1439890:CDS | 25.0% |
| ! | ATAACTAAGATAGTTGTAGT+GGG | - | tig0028900:42161-42180 | Msa1439890:CDS | 25.0% |
| !!! | TATCTGTCTGGTTTTTTTTT+TGG | + | tig0028900:42231-42250 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACCAGACAGAT+AGG | - | tig0028900:42230-42249 | Msa1439890:intron | 25.0% |
| ! | AAAAAAAAACCAGACAGATA+GGG | - | tig0028900:42231-42250 | Msa1439890:intron | 25.0% |
| ! | CCCAAGATTATTGTAAATAT+AGG | - | tig0028900:42422-42441 | Msa1439890:intron | 25.0% |
| ! | CCCTATATTTACAATAATCT+TGG | + | tig0028900:42426-42445 | None:intergenic | 25.0% |
| ! | GTTGGAATTAGTATTAGTAT+TGG | + | tig0028900:42703-42722 | None:intergenic | 25.0% |
| ! | CTAGAAAAAAAAGCAACATT+TGG | + | tig0028900:42789-42808 | None:intergenic | 25.0% |
| !!! | CAAATGTTGCTTTTTTTTCT+AGG | - | tig0028900:42787-42806 | Msa1439890:intron | 25.0% |
| ! | CATTCGTCTATTTATAGAAT+AGG | - | tig0028900:43108-43127 | Msa1439890:intron | 25.0% |
| ! | CATAACAACAAAATCTAACT+TGG | + | tig0028900:43170-43189 | None:intergenic | 25.0% |
| ! | AAACAAAACATACCATTTGA+GGG | + | tig0028900:43404-43423 | None:intergenic | 25.0% |
| ! | ACAAAAATTTGCCATGAAAA+TGG | + | tig0028900:43452-43471 | None:intergenic | 25.0% |
| ! | TGTCTCACATAATATTCATA+TGG | - | tig0028900:44111-44130 | Msa1439890:intron | 25.0% |
| ! | CCTGTTTAATAAATGAAGTT+AGG | + | tig0028900:44669-44688 | None:intergenic | 25.0% |
| ! | CCTAACTTCATTTATTAAAC+AGG | - | tig0028900:44666-44685 | Msa1439890:intron | 25.0% |
| !! | GGAATATTTACTACTACTTT+TGG | + | tig0028900:44773-44792 | None:intergenic | 25.0% |
| !! | AAATATTCCAACGTATCTTT+TGG | - | tig0028900:44784-44803 | Msa1439890:intron | 25.0% |
| ! | CTACTACTTAAATAATTAGG+TGG | - | tig0028900:45150-45169 | Msa1439890:intron | 25.0% |
| !!! | TTTTTAAGAGCCAGTTTTTT+GGG | + | tig0028900:45251-45270 | None:intergenic | 25.0% |
| ! | TTCATTCAAAATATCAGATG+AGG | + | tig0028900:45345-45364 | None:intergenic | 25.0% |
| ! | TTTCACCATTAAAATGCATT+GGG | + | tig0028900:45433-45452 | None:intergenic | 25.0% |
| ! | ATTTCACCATTAAAATGCAT+TGG | + | tig0028900:45434-45453 | None:intergenic | 25.0% |
| ! | ATTGTGAAAAAAACTTGAGA+GGG | + | tig0028900:45468-45487 | None:intergenic | 25.0% |
| ! | AATTGTGAAAAAAACTTGAG+AGG | + | tig0028900:45469-45488 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTTCACAATTGAG+AGG | - | tig0028900:45472-45491 | Msa1439890:intron | 25.0% |
| !!! | ATGAGGAGAGTATTTAAAAA+TGG | - | tig0028900:45510-45529 | Msa1439890:intron | 25.0% |
| !!! | TGAGGAGAGTATTTAAAAAT+GGG | - | tig0028900:45511-45530 | Msa1439890:intron | 25.0% |
| ! | AGTATTTAAAAATGGGGAAT+AGG | - | tig0028900:45518-45537 | Msa1439890:intron | 25.0% |
| ! | ATGTTGAAAACAAAACATGA+GGG | + | tig0028900:45577-45596 | None:intergenic | 25.0% |
| !! | GAATGGTGATTTTATATATC+AGG | + | tig0028900:45679-45698 | None:intergenic | 25.0% |
| ! | TTGAGCAAAGATAATAAGAA+TGG | + | tig0028900:45696-45715 | None:intergenic | 25.0% |
| ! | ATTAGCATTTGATGTAGATT+AGG | - | tig0028900:45984-46003 | Msa1439890:intron | 25.0% |
| ! | TGTCTAAACATTTATTGTTG+CGG | - | tig0028900:46082-46101 | Msa1439890:five_prime_UTR | 25.0% |
| AACAGCTTAAGGAAATTTGT+CGG | - | tig0028900:40000-40019 | Msa1439890:three_prime_UTR | 30.0% | |
| AGTTACCTAAAACTGATAAC+AGG | + | tig0028900:40035-40054 | None:intergenic | 30.0% | |
| TTAGTTACTGATAGAGAAAC+TGG | - | tig0028900:40200-40219 | Msa1439890:intron | 30.0% | |
| TAGTTACTGATAGAGAAACT+GGG | - | tig0028900:40201-40220 | Msa1439890:intron | 30.0% | |
| CTTCAGGGTTATGAAATTAA+TGG | - | tig0028900:40290-40309 | Msa1439890:intron | 30.0% | |
| !!! | GTTTTCTTTTGGGTTTTGTT+AGG | - | tig0028900:40420-40439 | Msa1439890:intron | 30.0% |
| !!! | TTTTTAAAGCTCCCAAACAA+AGG | - | tig0028900:40560-40579 | Msa1439890:intron | 30.0% |
| ATTGTATTTACTATTCCCCA+TGG | - | tig0028900:40718-40737 | Msa1439890:intron | 30.0% | |
| CTCACATTGATCAATATGTT+TGG | + | tig0028900:40959-40978 | None:intergenic | 30.0% | |
| CTATACGAGCATGAAAAAAT+GGG | + | tig0028900:41215-41234 | None:intergenic | 30.0% | |
| !! | AGGAACATTTTAATCCATGA+TGG | + | tig0028900:41271-41290 | None:intergenic | 30.0% |
| ! | TTCCTTTTTCTTTTACTGCA+GGG | - | tig0028900:41286-41305 | Msa1439890:intron | 30.0% |
| AAAGGAGAAAATGAAAACAC+AGG | + | tig0028900:41420-41439 | None:intergenic | 30.0% | |
| !! | TGTTTCTGAGGATCTTTTAA+CGG | + | tig0028900:41455-41474 | None:intergenic | 30.0% |
| !!! | TGCAAACCATTTTGATTTGA+CGG | + | tig0028900:41605-41624 | None:intergenic | 30.0% |
| !!! | AAGCTAACTTCTTTTTTTCC+TGG | - | tig0028900:41730-41749 | Msa1439890:intron | 30.0% |
| AGTCAAGAAAAAGATTATCC+AGG | + | tig0028900:41751-41770 | None:intergenic | 30.0% | |
| !! | CTTGTTTGTTGTTGTTATGA+TGG | - | tig0028900:41769-41788 | Msa1439890:CDS | 30.0% |
| ATGCACAAAGGAATTGAAAT+GGG | + | tig0028900:41898-41917 | None:intergenic | 30.0% | |
| !! | TTGTATGTTTTAGATGTCCT+TGG | - | tig0028900:42059-42078 | Msa1439890:CDS | 30.0% |
| CAAACATATAGTCAGAATGA+AGG | + | tig0028900:42092-42111 | None:intergenic | 30.0% | |
| ! | TGATTTGAAATCAGACAGAT+AGG | - | tig0028900:42187-42206 | Msa1439890:CDS | 30.0% |
| ! | GATTTGAAATCAGACAGATA+GGG | - | tig0028900:42188-42207 | Msa1439890:CDS | 30.0% |
| GCAAAAGAAGAATGAATCAT+TGG | - | tig0028900:42271-42290 | Msa1439890:intron | 30.0% | |
| ATGTTGAAATCTGACCTTAA+AGG | - | tig0028900:42351-42370 | Msa1439890:intron | 30.0% | |
| TTGGATATTCTCTAGATTCA+TGG | - | tig0028900:42633-42652 | Msa1439890:intron | 30.0% | |
| TTTGAACACACAATTGTTCT+GGG | - | tig0028900:43021-43040 | Msa1439890:intron | 30.0% | |
| TATAAATAGACGAATGCTCA+AGG | + | tig0028900:43104-43123 | None:intergenic | 30.0% | |
| AGAGAGATCAGAAATAACTT+AGG | + | tig0028900:43144-43163 | None:intergenic | 30.0% | |
| GGTTAAAACTTTCAACTTAG+AGG | + | tig0028900:43252-43271 | None:intergenic | 30.0% | |
| GAAACAAAACATACCATTTG+AGG | + | tig0028900:43405-43424 | None:intergenic | 30.0% | |
| CTAAATCAAATCCTAAGTCA+CGG | + | tig0028900:43478-43497 | None:intergenic | 30.0% | |
| ! | GTGACTTAGGATTTGATTTA+GGG | - | tig0028900:43477-43496 | Msa1439890:intron | 30.0% |
| CAGAGGCAGTAATAAAATAT+TGG | + | tig0028900:43598-43617 | None:intergenic | 30.0% | |
| AAAACATATCTACTCTTCAG+AGG | + | tig0028900:43615-43634 | None:intergenic | 30.0% | |
| TTCATTCATTAAAGACTGCA+AGG | + | tig0028900:43705-43724 | None:intergenic | 30.0% | |
| TTGCAGTCTTTAATGAATGA+AGG | - | tig0028900:43704-43723 | Msa1439890:intron | 30.0% | |
| TTGACACCTTATATTCAAGA+AGG | - | tig0028900:43809-43828 | Msa1439890:intron | 30.0% | |
| TGTTCAAAACACTCAAATCT+AGG | + | tig0028900:44206-44225 | None:intergenic | 30.0% | |
| !! | TGAGTGTTTTGAACAATGTA+TGG | - | tig0028900:44211-44230 | Msa1439890:CDS | 30.0% |
| !! | GAGTGTTTTGAACAATGTAT+GGG | - | tig0028900:44212-44231 | Msa1439890:CDS | 30.0% |
| TTAGAATGTACTACGCATTT+AGG | - | tig0028900:44253-44272 | Msa1439890:CDS | 30.0% | |
| ACTTCATTTATTAAACAGGC+TGG | - | tig0028900:44670-44689 | Msa1439890:intron | 30.0% | |
| TGTTTCTCAGTTATTTAGCA+AGG | - | tig0028900:44711-44730 | Msa1439890:intron | 30.0% | |
| GAAAATTACTCATTGTCACT+TGG | + | tig0028900:45052-45071 | None:intergenic | 30.0% | |
| !! | CATGAATTTGTTAGATGCTT+TGG | - | tig0028900:45077-45096 | Msa1439890:intron | 30.0% |
| TTTGTTAGATGCTTTGGTAT+TGG | - | tig0028900:45083-45102 | Msa1439890:intron | 30.0% | |
| GTGAAAATTTCCCAAAAAAC+TGG | - | tig0028900:45238-45257 | Msa1439890:intron | 30.0% | |
| !! | CTTTTTAAGAGCCAGTTTTT+TGG | + | tig0028900:45252-45271 | None:intergenic | 30.0% |
| ! | AAAATATCAGATGAGGTGTT+GGG | + | tig0028900:45338-45357 | None:intergenic | 30.0% |
| TTCTCACCATTAAAATGCAT+TGG | - | tig0028900:45376-45395 | Msa1439890:intron | 30.0% | |
| TAAATACTCTCCTCATTCAA+CGG | + | tig0028900:45506-45525 | None:intergenic | 30.0% | |
| !! | GAGGAGAGTATTTAAAAATG+GGG | - | tig0028900:45512-45531 | Msa1439890:intron | 30.0% |
| ATTTAAAAATGGGGAATAGG+AGG | - | tig0028900:45521-45540 | Msa1439890:intron | 30.0% | |
| TGTTGAAAACAAAACATGAG+GGG | + | tig0028900:45576-45595 | None:intergenic | 30.0% | |
| CATGTTGAAAACAAAACATG+AGG | + | tig0028900:45578-45597 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTTCAACATGAG+AGG | - | tig0028900:45580-45599 | Msa1439890:five_prime_UTR | 30.0% |
| ACATGGATCAAATAAGATTG+TGG | + | tig0028900:45645-45664 | None:intergenic | 30.0% | |
| AAACGCTTATGGTAGTAAAG+AGG | - | tig0028900:39762-39781 | Msa1439890:three_prime_UTR | 35.0% | |
| GTAGTAAAGAGGAAGAAGAT+TGG | - | tig0028900:39773-39792 | Msa1439890:three_prime_UTR | 35.0% | |
| ACAGCTTAAGGAAATTTGTC+GGG | - | tig0028900:40001-40020 | Msa1439890:three_prime_UTR | 35.0% | |
| ! | TTGGTCCTGTTATCAGTTTT+AGG | - | tig0028900:40027-40046 | Msa1439890:exon | 35.0% |
| TTACGGATTCTGTGAGTATA+CGG | - | tig0028900:40235-40254 | Msa1439890:intron | 35.0% | |
| TGAGTATACGGATGAAGAAA+CGG | - | tig0028900:40247-40266 | Msa1439890:intron | 35.0% | |
| !! | TCAATTACGTGTTGATTTCG+CGG | - | tig0028900:40316-40335 | Msa1439890:intron | 35.0% |
| ATTTCGCGGAGAATGATAAA+GGG | - | tig0028900:40330-40349 | Msa1439890:intron | 35.0% | |
| CAGGTATATTGTTGGAACTT+CGG | - | tig0028900:40371-40390 | Msa1439890:intron | 35.0% | |
| ! | AAAGAAAAGGGAAGGGTTTT+TGG | - | tig0028900:40462-40481 | Msa1439890:intron | 35.0% |
| ! | AAGAAAAGGGAAGGGTTTTT+GGG | - | tig0028900:40463-40482 | Msa1439890:intron | 35.0% |
| !! | CTTTTAGGAGGGAAGAAAAA+TGG | + | tig0028900:40600-40619 | None:intergenic | 35.0% |
| ! | TCATCTACTGCACTTCTTTT+AGG | + | tig0028900:40615-40634 | None:intergenic | 35.0% |
| GCCAAAGTGACTTATCATTT+GGG | + | tig0028900:40744-40763 | None:intergenic | 35.0% | |
| TGCCAAAGTGACTTATCATT+TGG | + | tig0028900:40745-40764 | None:intergenic | 35.0% | |
| !! | AGACAACTTTTTCTCCCAAA+TGG | - | tig0028900:40887-40906 | Msa1439890:CDS | 35.0% |
| TCCCAAATGGCTCATAATTT+GGG | - | tig0028900:40900-40919 | Msa1439890:CDS | 35.0% | |
| TCCCAAATTATGAGCCATTT+GGG | + | tig0028900:40904-40923 | None:intergenic | 35.0% | |
| ATCCCAAATTATGAGCCATT+TGG | + | tig0028900:40905-40924 | None:intergenic | 35.0% | |
| AAATGGCTCATAATTTGGGA+TGG | - | tig0028900:40904-40923 | Msa1439890:CDS | 35.0% | |
| TTGATCAATGTGAGACCAAA+AGG | - | tig0028900:40965-40984 | Msa1439890:CDS | 35.0% | |
| ! | GAGTAGTAACTGTTTCCTTT+TGG | + | tig0028900:40983-41002 | None:intergenic | 35.0% |
| CCTATACGAGCATGAAAAAA+TGG | + | tig0028900:41216-41235 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTCATGCTCGTAT+AGG | - | tig0028900:41213-41232 | Msa1439890:intron | 35.0% |
| GCTTAATTTCAGTTCCATCA+TGG | - | tig0028900:41254-41273 | Msa1439890:intron | 35.0% | |
| ! | GTTCCTTTTTCTTTTACTGC+AGG | - | tig0028900:41285-41304 | Msa1439890:intron | 35.0% |
| !!! | GCAAACCATTTTGATTTGAC+GGG | + | tig0028900:41604-41623 | None:intergenic | 35.0% |
| ! | TGATCCTTTAACTTTGCATC+TGG | - | tig0028900:41646-41665 | Msa1439890:intron | 35.0% |
| TGAGATAATCTCAGAGCTTA+AGG | - | tig0028900:41694-41713 | Msa1439890:intron | 35.0% | |
| !! | TTTGTTGTTGTTATGATGGC+AGG | - | tig0028900:41773-41792 | Msa1439890:CDS | 35.0% |
| ! | TTGTTGTTGTTATGATGGCA+GGG | - | tig0028900:41774-41793 | Msa1439890:CDS | 35.0% |
| CATGCACAAAGGAATTGAAA+TGG | + | tig0028900:41899-41918 | None:intergenic | 35.0% | |
| AGAATGAAGGAATATAGCCA+AGG | + | tig0028900:42079-42098 | None:intergenic | 35.0% | |
| ! | TTGATCTTGTCAGACTTGTT+AGG | + | tig0028900:42377-42396 | None:intergenic | 35.0% |
| AATAATCTTGGGACTAACTG+TGG | + | tig0028900:42414-42433 | None:intergenic | 35.0% | |
| ! | ATATAGGGAGAGAGTTTTTC+TGG | - | tig0028900:42438-42457 | Msa1439890:intron | 35.0% |
| AGAATATCCAACATGCACTT+AGG | + | tig0028900:42624-42643 | None:intergenic | 35.0% | |
| GAGTTGCAGCAATTATATTC+AGG | + | tig0028900:42680-42699 | None:intergenic | 35.0% | |
| ATACTAATTCCAACTCTCCA+TGG | - | tig0028900:42709-42728 | Msa1439890:intron | 35.0% | |
| AGAGATGGACAGATAGTATT+GGG | + | tig0028900:42746-42765 | None:intergenic | 35.0% | |
| AAGAGATGGACAGATAGTAT+TGG | + | tig0028900:42747-42766 | None:intergenic | 35.0% | |
| TAACCTACTACAAGTCTCTA+AGG | + | tig0028900:42833-42852 | None:intergenic | 35.0% | |
| TAGAGACTTGTAGTAGGTTA+TGG | - | tig0028900:42833-42852 | Msa1439890:intron | 35.0% | |
| AGAGACTTGTAGTAGGTTAT+GGG | - | tig0028900:42834-42853 | Msa1439890:intron | 35.0% | |
| !! | GTTGTTCTAGGATCTATGTA+TGG | - | tig0028900:42872-42891 | Msa1439890:intron | 35.0% |
| GCTCAAGGAAGTCAATTATA+TGG | + | tig0028900:42930-42949 | None:intergenic | 35.0% | |
| TATAGATAGATGGATGCTCA+AGG | + | tig0028900:42945-42964 | None:intergenic | 35.0% | |
| !! | GAGATTGGTTTATATGCACA+AGG | + | tig0028900:42987-43006 | None:intergenic | 35.0% |
| AACCAATCTCATAATGTGAC+AGG | - | tig0028900:42997-43016 | Msa1439890:intron | 35.0% | |
| CTTTGAACACACAATTGTTC+TGG | - | tig0028900:43020-43039 | Msa1439890:intron | 35.0% | |
| !! | ATTGTTCTGGGATCTATGTA+TGG | - | tig0028900:43033-43052 | Msa1439890:intron | 35.0% |
| TATGTATGGTTCACAGCAAT+TGG | - | tig0028900:43047-43066 | Msa1439890:intron | 35.0% | |
| GCTCAAGGAAGTCAATTAAA+TGG | + | tig0028900:43089-43108 | None:intergenic | 35.0% | |
| ! | ATTTTTGTCATCCGTGACTT+AGG | - | tig0028900:43464-43483 | Msa1439890:intron | 35.0% |
| ! | CGTGACTTAGGATTTGATTT+AGG | - | tig0028900:43476-43495 | Msa1439890:intron | 35.0% |
| CAGTTAAAAGCTTCGGAAAT+TGG | + | tig0028900:43508-43527 | None:intergenic | 35.0% | |
| CCATGTTCAGTTAAAAGCTT+CGG | + | tig0028900:43515-43534 | None:intergenic | 35.0% | |
| ! | ACTTGGCCTTCTTGAATATA+AGG | + | tig0028900:43818-43837 | None:intergenic | 35.0% |
| TCAATTGACTAGGAACTGAA+GGG | + | tig0028900:43859-43878 | None:intergenic | 35.0% | |
| GAATTTACGGTCAATTGACT+AGG | + | tig0028900:43869-43888 | None:intergenic | 35.0% | |
| GTTGAATTTGCCTGTTGAAA+TGG | + | tig0028900:44028-44047 | None:intergenic | 35.0% | |
| !!! | TATTTTAACCGCGGTTTGTA+TGG | - | tig0028900:44307-44326 | Msa1439890:CDS | 35.0% |
| TCTCTCTTATACTATGCTAC+AGG | + | tig0028900:44346-44365 | None:intergenic | 35.0% | |
| GTGTGTATCAATCACATGTT+TGG | + | tig0028900:44378-44397 | None:intergenic | 35.0% | |
| AACTAAGAGCAATTCCAATG+TGG | - | tig0028900:44401-44420 | Msa1439890:CDS | 35.0% | |
| ACTAAGAGCAATTCCAATGT+GGG | - | tig0028900:44402-44421 | Msa1439890:CDS | 35.0% | |
| ! | TGGCTTTTACATGTAGTACT+TGG | + | tig0028900:44565-44584 | None:intergenic | 35.0% |
| AGAGTAGAATGAAGAGAGAT+TGG | + | tig0028900:44585-44604 | None:intergenic | 35.0% | |
| AATAACTGAGAAACACCAGA+TGG | + | tig0028900:44706-44725 | None:intergenic | 35.0% | |
| TCTCAGTTATTTAGCAAGGA+AGG | - | tig0028900:44715-44734 | Msa1439890:intron | 35.0% | |
| !!! | TCTTTTGGAGTAGAGAATAC+AGG | - | tig0028900:44799-44818 | Msa1439890:intron | 35.0% |
| ! | TTCAATCTAGTGAGCTTTGA+TGG | + | tig0028900:44859-44878 | None:intergenic | 35.0% |
| AAGCTCACTAGATTGAATGA+CGG | - | tig0028900:44862-44881 | Msa1439890:intron | 35.0% | |
| CAAAATATCAGATGAGGTGT+TGG | + | tig0028900:45339-45358 | None:intergenic | 35.0% | |
| ! | TGGTGTCCAATGCATTTTAA+TGG | + | tig0028900:45385-45404 | None:intergenic | 35.0% |
| ! | TAGAGCCCAATGCATTTTAA+TGG | - | tig0028900:45425-45444 | Msa1439890:intron | 35.0% |
| AAAAACTTGAGAGGGTTATG+TGG | + | tig0028900:45460-45479 | None:intergenic | 35.0% | |
| GTTGAAAACAAAACATGAGG+GGG | + | tig0028900:45575-45594 | None:intergenic | 35.0% | |
| ATCAGAATAGCAGCATTAGA+CGG | + | tig0028900:45614-45633 | None:intergenic | 35.0% | |
| ATGCAGCAGCTATTTATTTC+CGG | - | tig0028900:45890-45909 | Msa1439890:five_prime_UTR | 35.0% | |
| ! | TGTTTTGCCAACTCAATTTC+CGG | - | tig0028900:45924-45943 | Msa1439890:intron | 35.0% |
| TAATATACAAGCGACAGACT+TGG | + | tig0028900:45968-45987 | None:intergenic | 35.0% | |
| ATCTTCGACGAAGAAGAGAA+GGG | + | tig0028900:39716-39735 | None:intergenic | 40.0% | |
| TTCTCTTCTTCGTCGAAGAT+CGG | - | tig0028900:39716-39735 | Msa1439890:three_prime_UTR | 40.0% | |
| GTAAAGAGGAAGAAGATTGG+AGG | - | tig0028900:39776-39795 | Msa1439890:three_prime_UTR | 40.0% | |
| CCATGAAATCTAGAGGAAGA+AGG | + | tig0028900:39814-39833 | None:intergenic | 40.0% | |
| CCTTCTTCCTCTAGATTTCA+TGG | - | tig0028900:39811-39830 | Msa1439890:three_prime_UTR | 40.0% | |
| TGTTCCTCTGTAGCATCATA+CGG | + | tig0028900:39984-40003 | None:intergenic | 40.0% | |
| TAGAGAAACTGGGAAACCTA+AGG | - | tig0028900:40211-40230 | Msa1439890:intron | 40.0% | |
| AGAGAAACTGGGAAACCTAA+GGG | - | tig0028900:40212-40231 | Msa1439890:intron | 40.0% | |
| GATTTCGCGGAGAATGATAA+AGG | - | tig0028900:40329-40348 | Msa1439890:intron | 40.0% | |
| !!! | CTTTTGGGTTTTGTTAGGAC+TGG | - | tig0028900:40425-40444 | Msa1439890:intron | 40.0% |
| TTTGTTAGGACTGGATGTTG+AGG | - | tig0028900:40434-40453 | Msa1439890:intron | 40.0% | |
| TTGTTAGGACTGGATGTTGA+GGG | - | tig0028900:40435-40454 | Msa1439890:intron | 40.0% | |
| ! | AGAAAAGGGAAGGGTTTTTG+GGG | - | tig0028900:40464-40483 | Msa1439890:intron | 40.0% |
| !! | CTACTGCACTTCTTTTAGGA+GGG | + | tig0028900:40611-40630 | None:intergenic | 40.0% |
| ! | TCTACTGCACTTCTTTTAGG+AGG | + | tig0028900:40612-40631 | None:intergenic | 40.0% |
| ACCCTGAAAGTCATGCATTA+TGG | - | tig0028900:40679-40698 | Msa1439890:intron | 40.0% | |
| CCCATAATGCATGACTTTCA+GGG | + | tig0028900:40683-40702 | None:intergenic | 40.0% | |
| CCCTGAAAGTCATGCATTAT+GGG | - | tig0028900:40680-40699 | Msa1439890:intron | 40.0% | |
| ACCCATAATGCATGACTTTC+AGG | + | tig0028900:40684-40703 | None:intergenic | 40.0% | |
| TGACTTATCATTTGGGCCAT+GGG | + | tig0028900:40737-40756 | None:intergenic | 40.0% | |
| GCCCAAATGATAAGTCACTT+TGG | - | tig0028900:40740-40759 | Msa1439890:intron | 40.0% | |
| CTCCCAAATGGCTCATAATT+TGG | - | tig0028900:40899-40918 | Msa1439890:CDS | 40.0% | |
| !! | TGAAAAAATGGGTTGGAAGG+TGG | + | tig0028900:41204-41223 | None:intergenic | 40.0% |
| !! | GCATGAAAAAATGGGTTGGA+AGG | + | tig0028900:41207-41226 | None:intergenic | 40.0% |
| ACGAGCATGAAAAAATGGGT+TGG | + | tig0028900:41211-41230 | None:intergenic | 40.0% | |
| GACCCTGCAGTAAAAGAAAA+AGG | + | tig0028900:41291-41310 | None:intergenic | 40.0% | |
| AAAGATCCTCAGAAACAAGC+AGG | - | tig0028900:41458-41477 | Msa1439890:intron | 40.0% | |
| TTGGCCAGATGCAAAGTTAA+AGG | + | tig0028900:41653-41672 | None:intergenic | 40.0% | |
| TCAGAGCTTAAGGTAAGTAC+TGG | - | tig0028900:41704-41723 | Msa1439890:intron | 40.0% | |
| CAGAGCTTAAGGTAAGTACT+GGG | - | tig0028900:41705-41724 | Msa1439890:intron | 40.0% | |
| TATACCTGAAAAAGGGCCTT+GGG | + | tig0028900:41858-41877 | None:intergenic | 40.0% | |
| TTATACCTGAAAAAGGGCCT+TGG | + | tig0028900:41859-41878 | None:intergenic | 40.0% | |
| AGAATGAAGGGATATAGCCA+AGG | + | tig0028900:41995-42014 | None:intergenic | 40.0% | |
| TGTGCTTGTGTCAGAATGAA+GGG | + | tig0028900:42007-42026 | None:intergenic | 40.0% | |
| TTGTGCTTGTGTCAGAATGA+AGG | + | tig0028900:42008-42027 | None:intergenic | 40.0% | |
| TGATGTCTAACTGCATGATG+AGG | - | tig0028900:42110-42129 | Msa1439890:CDS | 40.0% | |
| GATGTCTAACTGCATGATGA+GGG | - | tig0028900:42111-42130 | Msa1439890:CDS | 40.0% | |
| ATGTCTAACTGCATGATGAG+GGG | - | tig0028900:42112-42131 | Msa1439890:CDS | 40.0% | |
| ATCTTTCAACCCTATCTGTC+TGG | + | tig0028900:42200-42219 | None:intergenic | 40.0% | |
| TTCAACATCCAGCAAACTCA+CGG | + | tig0028900:42339-42358 | None:intergenic | 40.0% | |
| !! | TCAGACTTGTTAGGCCTTTA+AGG | + | tig0028900:42368-42387 | None:intergenic | 40.0% |
| TCCAACATGCACTTAGGAAT+CGG | + | tig0028900:42618-42637 | None:intergenic | 40.0% | |
| TAATTCCAACTCTCCATGGA+AGG | - | tig0028900:42713-42732 | Msa1439890:intron | 40.0% | |
| AACATTTGGAGATGAGCACA+TGG | + | tig0028900:42775-42794 | None:intergenic | 40.0% | |
| AGGATTTCTATGTTACGCCT+TGG | - | tig0028900:42807-42826 | Msa1439890:intron | 40.0% | |
| TGATCACACACAGTTGTTCT+AGG | - | tig0028900:42860-42879 | Msa1439890:intron | 40.0% | |
| TATGTATGGTTCGCAGCAAT+TGG | - | tig0028900:42886-42905 | Msa1439890:intron | 40.0% | |
| ATGTATGGTTCGCAGCAATT+GGG | - | tig0028900:42887-42906 | Msa1439890:intron | 40.0% | |
| AGCCTGTCACATTATGAGAT+TGG | + | tig0028900:43002-43021 | None:intergenic | 40.0% | |
| !! | CCGAAGCTTTTAACTGAACA+TGG | - | tig0028900:43512-43531 | Msa1439890:intron | 40.0% |
| TTAATGAATGAAGGCCACCT+TGG | - | tig0028900:43713-43732 | Msa1439890:intron | 40.0% | |
| TAGGAACTGAAGGGTTATGA+GGG | + | tig0028900:43850-43869 | None:intergenic | 40.0% | |
| GTCAATTGACTAGGAACTGA+AGG | + | tig0028900:43860-43879 | None:intergenic | 40.0% | |
| !! | CAGAGGAGGCTTTGAATTTA+CGG | + | tig0028900:43882-43901 | None:intergenic | 40.0% |
| !! | TTGCTTTGATGATGTTGAGG+GGG | + | tig0028900:43917-43936 | None:intergenic | 40.0% |
| !! | GTTGCTTTGATGATGTTGAG+GGG | + | tig0028900:43918-43937 | None:intergenic | 40.0% |
| !! | GGTTGCTTTGATGATGTTGA+GGG | + | tig0028900:43919-43938 | None:intergenic | 40.0% |
| !! | TGGTTGCTTTGATGATGTTG+AGG | + | tig0028900:43920-43939 | None:intergenic | 40.0% |
| GAATTTGCCTGTTGAAATGG+AGG | + | tig0028900:44025-44044 | None:intergenic | 40.0% | |
| ! | TACTGGTTGTTGTAGAAACG+AGG | + | tig0028900:44074-44093 | None:intergenic | 40.0% |
| CTACAACAACCAGTACTTGT+TGG | - | tig0028900:44079-44098 | Msa1439890:CDS | 40.0% | |
| AATGCACAAAGCAAGACTGA+TGG | + | tig0028900:44280-44299 | None:intergenic | 40.0% | |
| CAATTCCAATGTGGGTTCTT+AGG | - | tig0028900:44410-44429 | Msa1439890:intron | 40.0% | |
| GGTTCTTAGGAGTTCTTAGA+CGG | - | tig0028900:44423-44442 | Msa1439890:intron | 40.0% | |
| ATTCTACTCTTCTGCTTAGC+TGG | - | tig0028900:44595-44614 | Msa1439890:intron | 40.0% | |
| CTCTACTCCAAAAGATACGT+TGG | + | tig0028900:44794-44813 | None:intergenic | 40.0% | |
| ! | TCACTAGATTGAATGACGGA+AGG | - | tig0028900:44866-44885 | Msa1439890:intron | 40.0% |
| ! | CACTAGATTGAATGACGGAA+GGG | - | tig0028900:44867-44886 | Msa1439890:intron | 40.0% |
| ! | ACTAGATTGAATGACGGAAG+GGG | - | tig0028900:44868-44887 | Msa1439890:intron | 40.0% |
| !! | ACATCTGCTTTAGGAACTAC+AGG | + | tig0028900:44970-44989 | None:intergenic | 40.0% |
| TAGTTCCTAAAGCAGATGTG+CGG | - | tig0028900:44971-44990 | Msa1439890:intron | 40.0% | |
| CTCTGATCAACAATCTTCAC+AGG | - | tig0028900:44996-45015 | Msa1439890:intron | 40.0% | |
| CTTGGCATCTATGAATCATC+AGG | + | tig0028900:45034-45053 | None:intergenic | 40.0% | |
| AAAACAGACTCCACATCAGA+TGG | + | tig0028900:45728-45747 | None:intergenic | 40.0% | |
| CTATTTATTTCCGGCGAATG+TGG | - | tig0028900:45899-45918 | Msa1439890:five_prime_UTR | 40.0% | |
| GTTTCTGTCAAACCATCTTC+CGG | + | tig0028900:45946-45965 | None:intergenic | 40.0% | |
| GATCTTCGACGAAGAAGAGA+AGG | + | tig0028900:39717-39736 | None:intergenic | 45.0% | |
| TTCTTCGTCGAAGATCGGAA+CGG | - | tig0028900:39721-39740 | Msa1439890:three_prime_UTR | 45.0% | |
| ACCAAAGACAGTGCGATGTT+GGG | + | tig0028900:39849-39868 | None:intergenic | 45.0% | |
| TACCAAAGACAGTGCGATGT+TGG | + | tig0028900:39850-39869 | None:intergenic | 45.0% | |
| CATACCGTATGATGCTACAG+AGG | - | tig0028900:39977-39996 | Msa1439890:three_prime_UTR | 45.0% | |
| TGCTACAGAGGAACAGCTTA+AGG | - | tig0028900:39989-40008 | Msa1439890:three_prime_UTR | 45.0% | |
| GCTTAAGGAAATTTGTCGGG+AGG | - | tig0028900:40004-40023 | Msa1439890:three_prime_UTR | 45.0% | |
| AAGGAAATTTGTCGGGAGGT+TGG | - | tig0028900:40008-40027 | Msa1439890:three_prime_UTR | 45.0% | |
| ACTGGGAAACCTAAGGGTTA+CGG | - | tig0028900:40218-40237 | Msa1439890:intron | 45.0% | |
| TCACAGAATCCGTAACCCTT+AGG | + | tig0028900:40230-40249 | None:intergenic | 45.0% | |
| TGTTGAGGGAGGGAAAGAAA+AGG | - | tig0028900:40449-40468 | Msa1439890:intron | 45.0% | |
| GTTGAGGGAGGGAAAGAAAA+GGG | - | tig0028900:40450-40469 | Msa1439890:intron | 45.0% | |
| !!! | GGAAGGGTTTTTGGGGTTAA+GGG | - | tig0028900:40471-40490 | Msa1439890:intron | 45.0% |
| TTAAGGGAGGGAAAGGAGAA+TGG | - | tig0028900:40487-40506 | Msa1439890:intron | 45.0% | |
| ! | TCCCACCTTGTTTGAGTGAA+GGG | - | tig0028900:40524-40543 | Msa1439890:intron | 45.0% |
| AAGTCCCCTTCACTCAAACA+AGG | + | tig0028900:40532-40551 | None:intergenic | 45.0% | |
| GACTTATCATTTGGGCCATG+GGG | + | tig0028900:40736-40755 | None:intergenic | 45.0% | |
| GTGACTTATCATTTGGGCCA+TGG | + | tig0028900:40738-40757 | None:intergenic | 45.0% | |
| ! | TGGCTCATAATTTGGGATGG+AGG | - | tig0028900:40907-40926 | Msa1439890:CDS | 45.0% |
| ! | TTTCTTTTACTGCAGGGTCG+CGG | - | tig0028900:41292-41311 | Msa1439890:intron | 45.0% |
| !! | CCTGCATTTGTTGTCATTCC+TGG | + | tig0028900:41322-41341 | None:intergenic | 45.0% |
| CCAGGAATGACAACAAATGC+AGG | - | tig0028900:41319-41338 | Msa1439890:intron | 45.0% | |
| TTGATGTTGAGCTGCTTGAG+CGG | + | tig0028900:41507-41526 | None:intergenic | 45.0% | |
| AGCAGCTCAACATCAACCTA+TGG | - | tig0028900:41511-41530 | Msa1439890:intron | 45.0% | |
| GCAGCTCAACATCAACCTAT+GGG | - | tig0028900:41512-41531 | Msa1439890:intron | 45.0% | |
| ACGGCAATATGAAGACCCAT+AGG | + | tig0028900:41530-41549 | None:intergenic | 45.0% | |
| CATGACAGTTGCAGCTGTTA+CGG | + | tig0028900:41549-41568 | None:intergenic | 45.0% | |
| GGCATCCCGTCAAATCAAAA+TGG | - | tig0028900:41596-41615 | Msa1439890:intron | 45.0% | |
| !! | TAGCTGACTCCTGGACATTT+TGG | + | tig0028900:41672-41691 | None:intergenic | 45.0% |
| ! | TATCTCAGATAGCTGACTCC+TGG | + | tig0028900:41681-41700 | None:intergenic | 45.0% |
| GTTGTTATGATGGCAGGGAA+TGG | - | tig0028900:41779-41798 | Msa1439890:CDS | 45.0% | |
| GTGCTTGCATACATGCACAA+AGG | + | tig0028900:41910-41929 | None:intergenic | 45.0% | |
| TGTCTAACTGCATGATGAGG+GGG | - | tig0028900:42113-42132 | Msa1439890:CDS | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0028900:42535-42554 | Msa1439890:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0028900:42536-42555 | Msa1439890:intron | 45.0% |
| !! | ACTACAAGTCTCTAAGGCCA+AGG | + | tig0028900:42827-42846 | None:intergenic | 45.0% |
| ! | TGGCCTTAGAGACTTGTAGT+AGG | - | tig0028900:42827-42846 | Msa1439890:intron | 45.0% |
| TGTATGGTTCGCAGCAATTG+GGG | - | tig0028900:42888-42907 | Msa1439890:intron | 45.0% | |
| TTGCAGGCTCAGATAATGCT+AGG | - | tig0028900:43369-43388 | Msa1439890:intron | 45.0% | |
| TGCAGGCTCAGATAATGCTA+GGG | - | tig0028900:43370-43389 | Msa1439890:intron | 45.0% | |
| ! | ATGTTTGCTGAGTCTGACCA+AGG | + | tig0028900:43733-43752 | None:intergenic | 45.0% |
| TGGTCAGACTCAGCAAACAT+TGG | - | tig0028900:43733-43752 | Msa1439890:intron | 45.0% | |
| ! | AACTTGCTCTGTCCATAAGG+AGG | + | tig0028900:43779-43798 | None:intergenic | 45.0% |
| ! | TGCAACTTGCTCTGTCCATA+AGG | + | tig0028900:43782-43801 | None:intergenic | 45.0% |
| CTAGGAACTGAAGGGTTATG+AGG | + | tig0028900:43851-43870 | None:intergenic | 45.0% | |
| TGATGTTGAGGGGGAATTCT+GGG | + | tig0028900:43908-43927 | None:intergenic | 45.0% | |
| ATGATGTTGAGGGGGAATTC+TGG | + | tig0028900:43909-43928 | None:intergenic | 45.0% | |
| ! | AGCAACCATTTTGTACAGCC+TGG | - | tig0028900:43932-43951 | Msa1439890:intron | 45.0% |
| ! | ATTTTGTACAGCCTGGAGCA+GGG | - | tig0028900:43939-43958 | Msa1439890:intron | 45.0% |
| CTGTTGAAATGGAGGCCTAA+CGG | + | tig0028900:44017-44036 | None:intergenic | 45.0% | |
| TGTTGTAGAAACGAGGCATG+CGG | + | tig0028900:44067-44086 | None:intergenic | 45.0% | |
| GTTGAGCTTCCAACAAGTAC+TGG | + | tig0028900:44091-44110 | None:intergenic | 45.0% | |
| TTCCTTCTCCATACAAACCG+CGG | + | tig0028900:44318-44337 | None:intergenic | 45.0% | |
| GAACTCCTAAGAACCCACAT+TGG | + | tig0028900:44418-44437 | None:intergenic | 45.0% | |
| ! | CACCATTAGAGTACTCTGCA+TGG | - | tig0028900:44448-44467 | Msa1439890:intron | 45.0% |
| ! | TGCCATGCAGAGTACTCTAA+TGG | + | tig0028900:44453-44472 | None:intergenic | 45.0% |
| AGTACTCTGCATGGCATTCA+GGG | - | tig0028900:44457-44476 | Msa1439890:intron | 45.0% | |
| TGGCATTCAGGGTGGAAAAT+AGG | - | tig0028900:44468-44487 | Msa1439890:intron | 45.0% | |
| TTCCAACGCTCTTGAGGATT+GGG | - | tig0028900:44747-44766 | Msa1439890:intron | 45.0% | |
| TGGAGTAGAGAATACAGGCA+TGG | - | tig0028900:44804-44823 | Msa1439890:intron | 45.0% | |
| GATGGTCGTGTAAAGGATTC+TGG | + | tig0028900:44841-44860 | None:intergenic | 45.0% | |
| ! | GAGCTTTGATGGTCGTGTAA+AGG | + | tig0028900:44848-44867 | None:intergenic | 45.0% |
| TCAGACGTACCTGTTTCCAA+CGG | - | tig0028900:44907-44926 | Msa1439890:intron | 45.0% | |
| AACGGATCATCCCATGTTCT+CGG | - | tig0028900:44925-44944 | Msa1439890:intron | 45.0% | |
| TGAGCTACTTCCGAGAACAT+GGG | + | tig0028900:44938-44957 | None:intergenic | 45.0% | |
| ATGAGCTACTTCCGAGAACA+TGG | + | tig0028900:44939-44958 | None:intergenic | 45.0% | |
| !! | GCTTTAGGAACTACAGGTAC+AGG | + | tig0028900:44964-44983 | None:intergenic | 45.0% |
| GGTGGCAATAAGTGTATGAG+TGG | - | tig0028900:45168-45187 | Msa1439890:intron | 45.0% | |
| GGATCCAAATCCGTTGAATG+AGG | - | tig0028900:45493-45512 | Msa1439890:intron | 45.0% | |
| ! | CTCTCCTCATTCAACGGATT+TGG | + | tig0028900:45500-45519 | None:intergenic | 45.0% |
| TGGGGAATAGGAGGATTGAA+CGG | - | tig0028900:45530-45549 | Msa1439890:five_prime_UTR | 45.0% | |
| ATCAGGAATCGCTCGTTACA+TGG | + | tig0028900:45662-45681 | None:intergenic | 45.0% | |
| ATTGCAGCTTCCATCTGATG+TGG | - | tig0028900:45715-45734 | Msa1439890:intron | 45.0% | |
| GGCAAAGAACTCAATTGCTC+TGG | + | tig0028900:45776-45795 | None:intergenic | 45.0% | |
| ATGCAGCACTCATAACACAC+TGG | - | tig0028900:45851-45870 | Msa1439890:five_prime_UTR | 45.0% | |
| CCATCTTCCGGAAATTGAGT+TGG | + | tig0028900:45934-45953 | None:intergenic | 45.0% | |
| CCAACTCAATTTCCGGAAGA+TGG | - | tig0028900:45931-45950 | Msa1439890:intron | 45.0% | |
| TGATCTCGTACACGCTCATT+TGG | + | tig0028900:46117-46136 | None:intergenic | 45.0% | |
| !! | AAATGTAAATATTTATTTAA+TGG | + | tig0028900:43341-43360 | None:intergenic | 5.0% |
| !!! | AAAAAAAAATTCTTAAATTT+TGG | + | tig0028900:44518-44537 | None:intergenic | 5.0% |
| !! | TATTATTATTATTATTCTTA+TGG | + | tig0028900:46164-46183 | None:intergenic | 5.0% |
| !! | GGTGGTGGAACAAACGCTTA+TGG | - | tig0028900:39751-39770 | Msa1439890:three_prime_UTR | 50.0% |
| GGAGCAGCCATGAAATCTAG+AGG | + | tig0028900:39821-39840 | None:intergenic | 50.0% | |
| TCCCAACATCGCACTGTCTT+TGG | - | tig0028900:39845-39864 | Msa1439890:three_prime_UTR | 50.0% | |
| AAGTGCTCGCAGGAATCTTC+AGG | - | tig0028900:40274-40293 | Msa1439890:intron | 50.0% | |
| AGTGCTCGCAGGAATCTTCA+GGG | - | tig0028900:40275-40294 | Msa1439890:intron | 50.0% | |
| TTAGGACTGGATGTTGAGGG+AGG | - | tig0028900:40438-40457 | Msa1439890:intron | 50.0% | |
| TAGGACTGGATGTTGAGGGA+GGG | - | tig0028900:40439-40458 | Msa1439890:intron | 50.0% | |
| AGGGAGGGAAAGAAAAGGGA+AGG | - | tig0028900:40454-40473 | Msa1439890:intron | 50.0% | |
| GGGAGGGAAAGAAAAGGGAA+GGG | - | tig0028900:40455-40474 | Msa1439890:intron | 50.0% | |
| !!! | GGGAAGGGTTTTTGGGGTTA+AGG | - | tig0028900:40470-40489 | Msa1439890:intron | 50.0% |
| !!! | AGGGTTTTTGGGGTTAAGGG+AGG | - | tig0028900:40474-40493 | Msa1439890:intron | 50.0% |
| !!! | GGGTTTTTGGGGTTAAGGGA+GGG | - | tig0028900:40475-40494 | Msa1439890:intron | 50.0% |
| ! | TTTGGGGTTAAGGGAGGGAA+AGG | - | tig0028900:40480-40499 | Msa1439890:intron | 50.0% |
| ! | CTCCCACCTTGTTTGAGTGA+AGG | - | tig0028900:40523-40542 | Msa1439890:intron | 50.0% |
| CCCCTTCACTCAAACAAGGT+GGG | + | tig0028900:40528-40547 | None:intergenic | 50.0% | |
| ! | CCCACCTTGTTTGAGTGAAG+GGG | - | tig0028900:40525-40544 | Msa1439890:intron | 50.0% |
| TCCCCTTCACTCAAACAAGG+TGG | + | tig0028900:40529-40548 | None:intergenic | 50.0% | |
| ! | TTCTTTTACTGCAGGGTCGC+GGG | - | tig0028900:41293-41312 | Msa1439890:intron | 50.0% |
| ACTGTCATGACTGCAGCTCT+AGG | - | tig0028900:41560-41579 | Msa1439890:intron | 50.0% | |
| TGCATCTGGCCAAAATGTCC+AGG | - | tig0028900:41660-41679 | Msa1439890:intron | 50.0% | |
| GGGAATGGCTACACACAACA+AGG | - | tig0028900:41794-41813 | Msa1439890:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0028900:42537-42556 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0028900:42534-42553 | Msa1439890:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | - | tig0028900:42540-42559 | Msa1439890:intron | 50.0% | |
| ! | GCCGATTCCTAAGTGCATGT+TGG | - | tig0028900:42614-42633 | Msa1439890:intron | 50.0% |
| TTCCAACTCTCCATGGAAGG+TGG | - | tig0028900:42716-42735 | Msa1439890:intron | 50.0% | |
| TTCCACCTTCCATGGAGAGT+TGG | + | tig0028900:42721-42740 | None:intergenic | 50.0% | |
| ATTGGGAGTTCCACCTTCCA+TGG | + | tig0028900:42729-42748 | None:intergenic | 50.0% | |
| AGCACATGGCTGTCAAGAGA+TGG | + | tig0028900:42761-42780 | None:intergenic | 50.0% | |
| GGCTCAGATAATGCTAGGGA+TGG | - | tig0028900:43374-43393 | Msa1439890:intron | 50.0% | |
| AGGGATGGTCAACCCTCAAA+TGG | - | tig0028900:43389-43408 | Msa1439890:intron | 50.0% | |
| TTTGCTGAGTCTGACCAAGG+TGG | + | tig0028900:43730-43749 | None:intergenic | 50.0% | |
| !! | GCAAACATTGGTTCCGACTG+TGG | - | tig0028900:43745-43764 | Msa1439890:intron | 50.0% |
| GGACAGAGCAAGTTGCAGTT+TGG | - | tig0028900:43785-43804 | Msa1439890:intron | 50.0% | |
| !! | TATGAGGGAGAGTGCTGACT+TGG | + | tig0028900:43835-43854 | None:intergenic | 50.0% |
| CTGCTCCAGGCTGTACAAAA+TGG | + | tig0028900:43940-43959 | None:intergenic | 50.0% | |
| ! | CATTTTGTACAGCCTGGAGC+AGG | - | tig0028900:43938-43957 | Msa1439890:intron | 50.0% |
| AAATTACTCTGCCCTGCTCC+AGG | + | tig0028900:43953-43972 | None:intergenic | 50.0% | |
| TTCCATACGTCCCCCAACTA+CGG | - | tig0028900:43982-44001 | Msa1439890:intron | 50.0% | |
| GAAAAACTGCCCGTAGTTGG+GGG | + | tig0028900:43995-44014 | None:intergenic | 50.0% | |
| GGAAAAACTGCCCGTAGTTG+GGG | + | tig0028900:43996-44015 | None:intergenic | 50.0% | |
| CGGAAAAACTGCCCGTAGTT+GGG | + | tig0028900:43997-44016 | None:intergenic | 50.0% | |
| ACGGAAAAACTGCCCGTAGT+TGG | + | tig0028900:43998-44017 | None:intergenic | 50.0% | |
| ! | CTACGGGCAGTTTTTCCGTT+AGG | - | tig0028900:43999-44018 | Msa1439890:intron | 50.0% |
| CGTTAGGCCTCCATTTCAAC+AGG | - | tig0028900:44015-44034 | Msa1439890:intron | 50.0% | |
| TCGTCCAGATGCAAGCTTTC+AGG | - | tig0028900:44135-44154 | Msa1439890:intron | 50.0% | |
| AACCGCGGTTTGTATGGAGA+AGG | - | tig0028900:44313-44332 | Msa1439890:CDS | 50.0% | |
| GAGTACTCTGCATGGCATTC+AGG | - | tig0028900:44456-44475 | Msa1439890:intron | 50.0% | |
| AAACACCAGATGGCATGGAG+GGG | + | tig0028900:44696-44715 | None:intergenic | 50.0% | |
| GAAACACCAGATGGCATGGA+GGG | + | tig0028900:44697-44716 | None:intergenic | 50.0% | |
| AGAAACACCAGATGGCATGG+AGG | + | tig0028900:44698-44717 | None:intergenic | 50.0% | |
| CTGAGAAACACCAGATGGCA+TGG | + | tig0028900:44701-44720 | None:intergenic | 50.0% | |
| TAGACCTTCCAACGCTCTTG+AGG | - | tig0028900:44741-44760 | Msa1439890:intron | 50.0% | |
| !! | CAATCCTCAAGAGCGTTGGA+AGG | + | tig0028900:44748-44767 | None:intergenic | 50.0% |
| CTTCCAACGCTCTTGAGGAT+TGG | - | tig0028900:44746-44765 | Msa1439890:intron | 50.0% | |
| TGGGATGATCCGTTGGAAAC+AGG | + | tig0028900:44919-44938 | None:intergenic | 50.0% | |
| GAGAACATGGGATGATCCGT+TGG | + | tig0028900:44926-44945 | None:intergenic | 50.0% | |
| GGAATAGGAGGATTGAACGG+TGG | - | tig0028900:45533-45552 | Msa1439890:five_prime_UTR | 50.0% | |
| ATGACCTGTTGTTGCTGCTC+TGG | + | tig0028900:45800-45819 | None:intergenic | 50.0% | |
| GATCTCGCTTAAGCGCTTGT+TGG | + | tig0028900:45829-45848 | None:intergenic | 50.0% | |
| GCAAAACAGACCACATTCGC+CGG | + | tig0028900:45912-45931 | None:intergenic | 50.0% | |
| GAAGATCGGAACGGAGAGTG+TGG | - | tig0028900:39730-39749 | Msa1439890:three_prime_UTR | 55.0% | |
| ACAGTGCGATGTTGGGACTG+AGG | + | tig0028900:39842-39861 | None:intergenic | 55.0% | |
| AAACGGCGTTAAGTGCTCGC+AGG | - | tig0028900:40264-40283 | Msa1439890:intron | 55.0% | |
| GGAGGGAAAGGAGAATGGCT+GGG | - | tig0028900:40492-40511 | Msa1439890:intron | 55.0% | |
| ! | TCTTTTACTGCAGGGTCGCG+GGG | - | tig0028900:41294-41313 | Msa1439890:intron | 55.0% |
| !! | GGGATGCCTGCTTGTTTCTG+AGG | + | tig0028900:41467-41486 | None:intergenic | 55.0% |
| CAGGCATCCCAGCTGTTCAA+GGG | - | tig0028900:41477-41496 | Msa1439890:intron | 55.0% | |
| AGGCATCCCAGCTGTTCAAG+GGG | - | tig0028900:41478-41497 | Msa1439890:intron | 55.0% | |
| CGGATTCCCCTTGAACAGCT+GGG | + | tig0028900:41487-41506 | None:intergenic | 55.0% | |
| !! | GTCATGACTGCAGCTCTAGG+TGG | - | tig0028900:41563-41582 | Msa1439890:intron | 55.0% |
| AAAGCAACAGCTGGCGAGAC+AGG | + | tig0028900:41821-41840 | None:intergenic | 55.0% | |
| !! | CTCGCCAGCTGTTGCTTTCA+AGG | - | tig0028900:41823-41842 | Msa1439890:CDS | 55.0% |
| ! | GTGGCCTTGAAAGCAACAGC+TGG | + | tig0028900:41830-41849 | None:intergenic | 55.0% |
| TTCAAGGCCACAGTTGCCCA+AGG | - | tig0028900:41839-41858 | Msa1439890:CDS | 55.0% | |
| AAAAGGGCCTTGGGCAACTG+TGG | + | tig0028900:41849-41868 | None:intergenic | 55.0% | |
| ! | GTTGCCCAAGGCCCTTTTTC+AGG | - | tig0028900:41851-41870 | Msa1439890:CDS | 55.0% |
| GCGATGATCCGTGAGTTTGC+TGG | - | tig0028900:42328-42347 | Msa1439890:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | tig0028900:42542-42561 | None:intergenic | 55.0% | |
| AGAAGCCGACCCCACTTAGT+GGG | + | tig0028900:42548-42567 | None:intergenic | 55.0% | |
| !! | ACATTGGTTCCGACTGTGGC+TGG | - | tig0028900:43749-43768 | Msa1439890:intron | 55.0% |
| !! | GTGGCTGGTCTACCTCCTTA+TGG | - | tig0028900:43764-43783 | Msa1439890:intron | 55.0% |
| GTAGTTGGGGGACGTATGGA+AGG | + | tig0028900:43983-44002 | None:intergenic | 55.0% | |
| TCCATACGTCCCCCAACTAC+GGG | - | tig0028900:43983-44002 | Msa1439890:intron | 55.0% | |
| GGCACCTGAAAGCTTGCATC+TGG | + | tig0028900:44142-44161 | None:intergenic | 55.0% | |
| ACTCTGCATGGCATTCAGGG+TGG | - | tig0028900:44460-44479 | Msa1439890:intron | 55.0% | |
| ! | GAGTGCCGCACATCTGCTTT+AGG | + | tig0028900:44979-44998 | None:intergenic | 55.0% |
| ACCTGTTGTTGCTGCTCTGG+TGG | + | tig0028900:45797-45816 | None:intergenic | 55.0% | |
| ! | GATCGGAACGGAGAGTGTGG+TGG | - | tig0028900:39733-39752 | Msa1439890:three_prime_UTR | 60.0% |
| GGGAGGGAAAGGAGAATGGC+TGG | - | tig0028900:40491-40510 | Msa1439890:intron | 60.0% | |
| GGGAAAGGAGAATGGCTGGG+AGG | - | tig0028900:40495-40514 | Msa1439890:intron | 60.0% | |
| ! | CTTTTACTGCAGGGTCGCGG+GGG | - | tig0028900:41295-41314 | Msa1439890:intron | 60.0% |
| GCAGGCATCCCAGCTGTTCA+AGG | - | tig0028900:41476-41495 | Msa1439890:intron | 60.0% | |
| GCGGATTCCCCTTGAACAGC+TGG | + | tig0028900:41488-41507 | None:intergenic | 60.0% | |
| ! | GCTCTAGGTGGTGCTCAGAC+TGG | - | tig0028900:41575-41594 | Msa1439890:intron | 60.0% |
| GAGAAGCCGACCCCACTTAG+TGG | + | tig0028900:42549-42568 | None:intergenic | 60.0% | |
| GGAGGTAGACCAGCCACAGT+CGG | + | tig0028900:43761-43780 | None:intergenic | 60.0% | |
| GGAATTCTGGGCTGCAGAGG+AGG | + | tig0028900:43896-43915 | None:intergenic | 60.0% | |
| GAAACGAGGCATGCGGTTGC+TGG | + | tig0028900:44060-44079 | None:intergenic | 60.0% | |
| ! | GGCCCAATCCTCAAGAGCGT+TGG | + | tig0028900:44752-44771 | None:intergenic | 60.0% |
| ACGGAAGGGGTCTCTCTGCT+GGG | - | tig0028900:44881-44900 | Msa1439890:intron | 60.0% | |
| GCCACCAGAGCAGCAACAAC+AGG | - | tig0028900:45793-45812 | Msa1439890:intron | 60.0% | |
| ! | CGGAACGGAGAGTGTGGTGG+TGG | - | tig0028900:39736-39755 | Msa1439890:three_prime_UTR | 65.0% |
| GGGGGAATTCTGGGCTGCAG+AGG | + | tig0028900:43899-43918 | None:intergenic | 65.0% | |
| GCCCGTAGTTGGGGGACGTA+TGG | + | tig0028900:43987-44006 | None:intergenic | 65.0% | |
| GACGGAAGGGGTCTCTCTGC+TGG | - | tig0028900:44880-44899 | Msa1439890:intron | 65.0% | |
| GCTGGCCCCTCCATGCCATC+TGG | - | tig0028900:44688-44707 | Msa1439890:intron | 70.0% | |
| ! | CTGCAGGGTCGCGGGGGACC+AGG | - | tig0028900:41301-41320 | Msa1439890:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028900 | gene | 39690 | 46207 | 39690 | ID=Msa1439890;Name=Msa1439890 |
| tig0028900 | mRNA | 39690 | 46207 | 39690 | ID=Msa1439890-mRNA-1;Parent=Msa1439890;Name=Msa1439890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=459|0.63|0.58|1|0.63|0.66|12|342|421 |
| tig0028900 | exon | 39690 | 40175 | 39690 | ID=Msa1439890-mRNA-1:exon:11985;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 40880 | 41085 | 40880 | ID=Msa1439890-mRNA-1:exon:11984;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 41116 | 41209 | 41116 | ID=Msa1439890-mRNA-1:exon:11983;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 41765 | 42004 | 41765 | ID=Msa1439890-mRNA-1:exon:11982;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 42017 | 42232 | 42017 | ID=Msa1439890-mRNA-1:exon:11981;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 42487 | 42522 | 42487 | ID=Msa1439890-mRNA-1:exon:11980;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 44025 | 44102 | 44025 | ID=Msa1439890-mRNA-1:exon:11979;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 44182 | 44427 | 44182 | ID=Msa1439890-mRNA-1:exon:11978;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 44557 | 44590 | 44557 | ID=Msa1439890-mRNA-1:exon:11977;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 45524 | 45698 | 45524 | ID=Msa1439890-mRNA-1:exon:11976;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 45849 | 45927 | 45849 | ID=Msa1439890-mRNA-1:exon:11975;Parent=Msa1439890-mRNA-1 |
| tig0028900 | exon | 46031 | 46207 | 46031 | ID=Msa1439890-mRNA-1:exon:11974;Parent=Msa1439890-mRNA-1 |
| tig0028900 | five_prime_UTR | 46031 | 46207 | 46031 | ID=Msa1439890-mRNA-1:five_prime_utr;Parent=Msa1439890-mRNA-1 |
| tig0028900 | five_prime_UTR | 45849 | 45927 | 45849 | ID=Msa1439890-mRNA-1:five_prime_utr;Parent=Msa1439890-mRNA-1 |
| tig0028900 | five_prime_UTR | 45524 | 45698 | 45524 | ID=Msa1439890-mRNA-1:five_prime_utr;Parent=Msa1439890-mRNA-1 |
| tig0028900 | five_prime_UTR | 44563 | 44590 | 44563 | ID=Msa1439890-mRNA-1:five_prime_utr;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 44557 | 44562 | 44557 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 44182 | 44427 | 44182 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 44025 | 44102 | 44025 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 42487 | 42522 | 42487 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 42017 | 42232 | 42017 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 41765 | 42004 | 41765 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 41116 | 41209 | 41116 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 40880 | 41085 | 40880 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | CDS | 40032 | 40175 | 40032 | ID=Msa1439890-mRNA-1:cds;Parent=Msa1439890-mRNA-1 |
| tig0028900 | three_prime_UTR | 39690 | 40031 | 39690 | ID=Msa1439890-mRNA-1:three_prime_utr;Parent=Msa1439890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
