AlfalfaGEDB | Msa0125370

M. sativa cultivar zhongmu-4 / Msa0125370

KEGG: -
GO: GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0061919 GO:0071840 GO:0071944 GO:1905037
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125370	XP_013468656.1	83.955	804	22	4	2	726	356	1131	0.0	1251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125370	sp\|A8MQL1\|TRF1B_ARATH	34.668	799	358	28	2	725	372	1081	2.51e-78	275

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125370	A0A072VMM4	83.955	804	22	4	2	726	356	1131	0.0	1251

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0125370	0.820143	8.013547e-53	-8.615850e-47
Msa0125370	Msa0138970	0.804541	2.055845e-49	-8.615850e-47
Msa0125370	Msa0156650	0.816224	6.174976e-52	-8.615850e-47
Msa0125370	Msa0167640	0.815428	9.292770e-52	-8.615850e-47
Msa0125370	Msa0177700	0.827995	1.149767e-54	-8.615850e-47
Msa0125370	Msa0178030	0.848266	6.839970e-60	-8.615850e-47
Msa0125370	Msa0196020	0.878805	2.085932e-69	-8.615850e-47
Msa0125370	Msa0275400	0.846651	1.899759e-59	-8.615850e-47
Msa0125370	Msa0374250	-0.814060	1.867574e-51	-8.615850e-47
Msa0125370	Msa0377530	-0.803006	4.283300e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125370	MtrunA17_Chr1g0186411	83.955	804	22	4	2	726	356	1131	0.0	1251
Msa0125370	MtrunA17_Chr1g0168221	52.606	825	241	19	2	725	360	1135	0.0	714

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125370	AT1G04300.6	34.625	800	357	29	2	725	110	819	2.67e-81	276
Msa0125370	AT1G04300.2	34.668	799	358	28	2	725	287	996	1.15e-79	275
Msa0125370	AT1G04300.3	34.668	799	358	28	2	725	372	1081	2.56e-79	275
Msa0125370	AT1G04300.4	34.668	799	358	28	2	725	345	1054	2.94e-79	274
Msa0125370	AT1G04300.1	34.668	799	358	28	2	725	364	1073	3.40e-79	275
Msa0125370	AT1G04300.5	34.668	799	358	28	2	725	334	1043	3.97e-79	274
Msa0125370	AT5G43560.2	76.316	76	18	0	2	77	365	440	1.63e-24	110
Msa0125370	AT5G43560.1	76.316	76	18	0	2	77	365	440	1.63e-24	110

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Find 216 sgRNAs with CRISPR-Local

Find 731 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGGAGTCAATGAGA+GGG	0.644020	1_3:+53862880	Msa0125370:CDS
AAAAGAAGGCAAAGAAAAGC+AGG	0.510688	1_3:+53862903	Msa0125370:CDS
AAAATAGATGGTCGGCCATC+TGG	0.411364	1_3:+53866766	Msa0125370:CDS
AAACCAATGGCAGGTGGCCA+CGG	0.478223	1_3:+53869035	Msa0125370:CDS
AAAGACGGCCAGGGCAAGTT+TGG	0.292974	1_3:+53868759	Msa0125370:CDS
AAAGGCGTCTCACAGAATTA+GGG	0.494724	1_3:+53861264	Msa0125370:CDS
AACCAATGGCAGGTGGCCAC+GGG	0.514614	1_3:+53869036	Msa0125370:CDS
AACTGCTCCTGTGGTCTCAA+TGG	0.394649	1_3:+53868181	Msa0125370:CDS
AACTTGTGAGGCAGAGGTGA+AGG	0.498028	1_3:-53868036	None:intergenic
AAGAACTGGTCGAGGATCCG+CGG	0.659961	1_3:-53868861	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCATATTCTGAATTAGTGG+GGG	+	chr1_3:53860636-53860655	Msa0125370:intron	30.0%
AAGATAACATCTACGAGATA+TGG	-	chr1_3:53860974-53860993	None:intergenic	30.0%
ATTTGCACATATTAGGTATC+TGG	+	chr1_3:53861064-53861083	Msa0125370:intron	30.0%
GAATGTTATCTTCAATAACC+CGG	+	chr1_3:53861086-53861105	Msa0125370:intron	30.0%
TCAATATGAACCCTTTCTAT+TGG	+	chr1_3:53861792-53861811	Msa0125370:intron	30.0%
CAATATGAACCCTTTCTATT+GGG	+	chr1_3:53861793-53861812	Msa0125370:intron	30.0%
CCCATTATACAAACCTAATA+TGG	+	chr1_3:53861917-53861936	Msa0125370:intron	30.0%
TACAAACCTAATATGGTATC+AGG	+	chr1_3:53861924-53861943	Msa0125370:intron	30.0%
TGTTGCATGGATATAAATTG+TGG	-	chr1_3:53861967-53861986	None:intergenic	30.0%
TCTTTATTCTATGTGGAACT+GGG	-	chr1_3:53862032-53862051	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	53860304	53869188	53860304	ID=Msa0125370;Name=Msa0125370
chr1_3	mRNA	53860304	53869188	53860304	ID=Msa0125370-mRNA-1;Parent=Msa0125370;Name=Msa0125370-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0\|0\|0\|0.75\|1\|1\|8\|0\|726
chr1_3	exon	53860304	53860306	53860304	ID=Msa0125370-mRNA-1:exon:16491;Parent=Msa0125370-mRNA-1
chr1_3	exon	53861215	53861327	53861215	ID=Msa0125370-mRNA-1:exon:16492;Parent=Msa0125370-mRNA-1
chr1_3	exon	53862775	53862924	53862775	ID=Msa0125370-mRNA-1:exon:16493;Parent=Msa0125370-mRNA-1
chr1_3	exon	53863920	53864004	53863920	ID=Msa0125370-mRNA-1:exon:16494;Parent=Msa0125370-mRNA-1
chr1_3	exon	53866146	53866483	53866146	ID=Msa0125370-mRNA-1:exon:16495;Parent=Msa0125370-mRNA-1
chr1_3	exon	53866717	53866918	53866717	ID=Msa0125370-mRNA-1:exon:16496;Parent=Msa0125370-mRNA-1
chr1_3	exon	53867801	53868376	53867801	ID=Msa0125370-mRNA-1:exon:16497;Parent=Msa0125370-mRNA-1
chr1_3	exon	53868475	53869188	53868475	ID=Msa0125370-mRNA-1:exon:16498;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53860304	53860306	53860304	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53861215	53861327	53861215	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53862775	53862924	53862775	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53863920	53864004	53863920	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53866146	53866483	53866146	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53866717	53866918	53866717	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53867801	53868376	53867801	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1
chr1_3	CDS	53868475	53869188	53868475	ID=Msa0125370-mRNA-1:cds;Parent=Msa0125370-mRNA-1

Gene Sequence

>Msa0125370

ATGGATGTAAACTCTGGTGAGGATTTCAATAAAGATTCTATTGAGCGCGATGAAAGGCGTCTCACAGAATTAGGGCGTAGGACTTTGGAAATATTTGTCCTTGCTCATATATTCAGCAACAAAATTGAGGTTGCTTATCAGGAAGCTGTTGCTCTAAAGAGACAAGAAGAACTCATCCGTGAAGAAGAGGCATCATGGCAAGCTGAAGGTGATCAGAAAACAAAACGTGGAGTCAATGAGAGGGAAAAGAAGGCAAAGAAAAGCAGTTCATGGCTGAACATTACGGTGTCACTTGATCTTTGGAGTCCCTTGACCTATGTAACCGATTCCATCCAATGGGAAAAGCCTATGGCCAAACAAAAGCGGAACAATAAGAAAGTAAAGGACAAAGGGAGGGAGGAGAGGACTACTATGGCTGTGCATGGGACGAACCAAGAAGACAATGGTGTTGATGAGAAAATGGATTCTAATGAGGAAGCTCAAACTCTGTCTGAAAAGCCTGATACTATGGAAGATATTTCTGATGTGTCTGACTCTCTGGATGGAGTTACTGAAATGCTTCATCTGGATTCAGAAGACAGAGATACTAGTCCTGTTAATTGGGATACTGATGCATCAGAAGTTCATCCTCCAACTGAGGCTTGTAACAAAGGCATAGGTGATGTTTCATCCAGACAAAATGGAATAATAGGTAAGAACAGAGGCATAGCATCATGTGACACTGGTGGTTGGACAAATAAAATAGATGGTCGGCCATCTGGTGCTGCAGCAGATGCTGGGGTTATTAACAAAGAGTCTGGAAGTGGAAAGGCTGGAAAAAATGAGTCCGAGGGTGCTGTTGTCACATTGAAGGATCGGTTAAAGTGGGCTGAGAAGCATGTTGTCAGAAAGGACGAGGAGGTTGTTTCACTTCAAACGAAACCCAACATCAAAGACGAAGTTGGGATAGAAAGACTTACTGACAACGAATGTCTACATAAAGCTGTGCCATCTTCACCTGTCAGTCCTCCTAGTAGCTCGCCTGGTCAAATGTTAGTAAACAAGACAAGTGCTACTTTAGATCCTTTTCATGTCACTAAAACATCTTCAAATGGCTCCCAACAGACTGATAAAGATCCATCTCCCCCCTTCACCTCTGCCTCACAAGTTACAACTTCGTCCAAAACTGAGATCCAGAAGACTTCAACTGCAAGATTAACTGAAGGATCTGTATCACGAGTGCCTACTATCTCAAGACCTTCAAGTACTCCTTTGGTTTCTGGTCCCAGGCCAACTGCTCCTGTGGTCTCAATGGTTCAAACAGCTCTGCCACTTGCACGCTCAATGAGTGCAGCTGGCCGGTTAGGTCCTGATCCCTCACCCGCCACTCATAGTCATGTTCCTCAATCCTACAGAAATGCTATCATGGGGAACACTGTGACCTCAACTGCTGCCAGTCTGACCCATTCTAGCTCGTCGTGTTCAGGATGTGGTGTTCCCTTTGGCTTGAGAACACAGGATGTTTTACAGAATGGTTCCCAGTGGATTGAAAGTTCTCAAAGAGAATCGGCCAGAAGCATGTATGATCAGCCCGCTGGTCTTAATGATGATCAAAATCATGACTTGTACAGGCCACTACACAGTAGATCTATGGGCAACATGTTAACTGAGTTCCCAGCCTGCACATCCGGGCGTCAGAATCAAGCGTTGGTGGATGAGTTCCCTCACCTTGATATCATAAACGACCTGCTTGATGATGAGCATACTGTTGGAAAGACGGCCAGGGCAAGTTTGGGATTCGAGTGTCTGAGAAATGGGCCGCAATCGCTAAATCGACAATTCAGCTTTCCTGGAGACTTGGATGCAAATGATGACCGCGGATCCTCGACCAGTTCTTGCAGGCTCGAGCGTTCACAAAGTTACCATCATGATCATGGATTCCGAGGAGGGTATAGCTCATCCCATGGGCATTTTGATTCACTTAGGGATTACATCCCGCAAGTTACTAGCATGCCTTATGTCAATGGACAGGTTGATGGATTGATTACAAACCAATGGCAGGTGGCCACGGGTCCTGATCTATTGTATGCAGGCATGAGAAACACAGAGAATGATGGCTACCCATATTATCCAGATTATTACTCAAATATGGCATGTGGTGTCAATGGTTATACTGTATTCAGGCCCTCAAATGGTTCTTAG

Protein sequence

>Msa0125370

MDVNSGEDFNKDSIERDERRLTELGRRTLEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEASWQAEGDQKTKRGVNEREKKAKKSSSWLNITVSLDLWSPLTYVTDSIQWEKPMAKQKRNNKKVKDKGREERTTMAVHGTNQEDNGVDEKMDSNEEAQTLSEKPDTMEDISDVSDSLDGVTEMLHLDSEDRDTSPVNWDTDASEVHPPTEACNKGIGDVSSRQNGIIGKNRGIASCDTGGWTNKIDGRPSGAAADAGVINKESGSGKAGKNESEGAVVTLKDRLKWAEKHVVRKDEEVVSLQTKPNIKDEVGIERLTDNECLHKAVPSSPVSPPSSSPGQMLVNKTSATLDPFHVTKTSSNGSQQTDKDPSPPFTSASQVTTSSKTEIQKTSTARLTEGSVSRVPTISRPSSTPLVSGPRPTAPVVSMVQTALPLARSMSAAGRLGPDPSPATHSHVPQSYRNAIMGNTVTSTAASLTHSSSSCSGCGVPFGLRTQDVLQNGSQWIESSQRESARSMYDQPAGLNDDQNHDLYRPLHSRSMGNMLTEFPACTSGRQNQALVDEFPHLDIINDLLDDEHTVGKTARASLGFECLRNGPQSLNRQFSFPGDLDANDDRGSSTSSCRLERSQSYHHDHGFRGGYSSSHGHFDSLRDYIPQVTSMPYVNGQVDGLITNQWQVATGPDLLYAGMRNTENDGYPYYPDYYSNMACGVNGYTVFRPSNGS*