Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444480 | G7IPZ8 | 74.745 | 392 | 57 | 3 | 1 | 357 | 1 | 385 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1444480 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1444480 | 0.800408 | 1.461622e-48 | -8.615850e-47 |
| Msa0157290 | Msa1444480 | 0.801403 | 9.154709e-49 | -8.615850e-47 |
| Msa0880140 | Msa1444480 | 0.805746 | 1.150176e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444480 | MtrunA17_Chr2g0286191 | 68.661 | 351 | 72 | 2 | 32 | 347 | 16 | 363 | 3.59e-158 | 456 |
| Msa1444480 | MtrunA17_Chr4g0067121 | 43.768 | 345 | 158 | 4 | 45 | 353 | 46 | 390 | 7.58e-88 | 276 |
| Msa1444480 | MtrunA17_Chr2g0295731 | 41.209 | 364 | 164 | 7 | 30 | 343 | 14 | 377 | 3.27e-78 | 251 |
| Msa1444480 | MtrunA17_Chr2g0295761 | 40.762 | 341 | 166 | 4 | 42 | 346 | 52 | 392 | 2.66e-77 | 249 |
| Msa1444480 | MtrunA17_Chr2g0295741 | 39.175 | 388 | 189 | 8 | 1 | 348 | 1 | 381 | 1.06e-75 | 245 |
| Msa1444480 | MtrunA17_Chr2g0286221 | 88.372 | 129 | 15 | 0 | 229 | 357 | 55 | 183 | 6.42e-75 | 236 |
| Msa1444480 | MtrunA17_Chr2g0296121 | 40.974 | 349 | 164 | 6 | 36 | 347 | 117 | 460 | 3.43e-74 | 243 |
| Msa1444480 | MtrunA17_Chr2g0296151 | 39.840 | 374 | 174 | 7 | 17 | 348 | 11 | 375 | 9.71e-71 | 232 |
| Msa1444480 | MtrunA17_Chr2g0296301 | 36.648 | 352 | 186 | 5 | 42 | 356 | 28 | 379 | 6.19e-68 | 225 |
| Msa1444480 | MtrunA17_Chr2g0296111 | 39.655 | 348 | 170 | 6 | 44 | 352 | 33 | 379 | 5.85e-66 | 219 |
| Msa1444480 | MtrunA17_Chr2g0296721 | 36.856 | 388 | 192 | 7 | 9 | 348 | 5 | 387 | 9.29e-64 | 214 |
| Msa1444480 | MtrunA17_Chr2g0315731 | 37.047 | 386 | 199 | 7 | 9 | 350 | 25 | 410 | 5.98e-63 | 213 |
| Msa1444480 | MtrunA17_Chr2g0296711 | 38.053 | 339 | 170 | 7 | 50 | 348 | 53 | 391 | 5.98e-62 | 210 |
| Msa1444480 | MtrunA17_Chr2g0296741 | 35.417 | 384 | 204 | 7 | 9 | 348 | 25 | 408 | 8.08e-60 | 204 |
| Msa1444480 | MtrunA17_Chr2g0296191 | 37.870 | 338 | 173 | 7 | 41 | 342 | 173 | 509 | 7.25e-58 | 209 |
| Msa1444480 | MtrunA17_Chr2g0296191 | 35.180 | 361 | 176 | 8 | 32 | 340 | 640 | 994 | 1.26e-50 | 187 |
| Msa1444480 | MtrunA17_Chr2g0296291 | 34.204 | 383 | 167 | 6 | 45 | 348 | 27 | 403 | 3.52e-57 | 197 |
| Msa1444480 | MtrunA17_Chr2g0296251 | 34.933 | 375 | 171 | 5 | 42 | 343 | 24 | 398 | 4.91e-57 | 196 |
| Msa1444480 | MtrunA17_Chr2g0296221 | 36.467 | 351 | 171 | 7 | 40 | 343 | 69 | 414 | 2.97e-56 | 195 |
| Msa1444480 | MtrunA17_Chr2g0296231 | 35.526 | 380 | 200 | 9 | 7 | 343 | 3 | 380 | 3.84e-56 | 194 |
| Msa1444480 | MtrunA17_Chr4g0067671 | 34.595 | 370 | 183 | 8 | 1 | 326 | 1 | 355 | 1.37e-55 | 191 |
| Msa1444480 | MtrunA17_Chr2g0296171 | 37.318 | 343 | 163 | 8 | 50 | 345 | 60 | 397 | 4.57e-55 | 191 |
| Msa1444480 | MtrunA17_Chr4g0067141 | 34.524 | 336 | 185 | 3 | 41 | 341 | 35 | 370 | 3.02e-52 | 182 |
| Msa1444480 | MtrunA17_Chr2g0296181 | 35.196 | 358 | 167 | 8 | 32 | 350 | 33 | 364 | 1.20e-50 | 179 |
| Msa1444480 | MtrunA17_Chr4g0001831 | 33.423 | 371 | 203 | 5 | 17 | 344 | 2 | 371 | 1.39e-48 | 172 |
| Msa1444480 | MtrunA17_Chr2g0296211 | 32.295 | 353 | 175 | 7 | 7 | 350 | 68 | 365 | 2.87e-42 | 155 |
| Msa1444480 | MtrunA17_Chr2g0295711 | 41.916 | 167 | 90 | 2 | 33 | 197 | 34 | 195 | 2.84e-33 | 126 |
| Msa1444480 | MtrunA17_Chr2g0295751 | 42.353 | 170 | 75 | 4 | 10 | 177 | 28 | 176 | 4.80e-30 | 123 |
| Msa1444480 | MtrunA17_Chr2g0296751 | 50.413 | 121 | 59 | 1 | 229 | 348 | 14 | 134 | 5.09e-29 | 113 |
| Msa1444480 | MtrunA17_Chr2g0296701 | 49.587 | 121 | 60 | 1 | 229 | 348 | 41 | 161 | 4.11e-28 | 110 |
| Msa1444480 | MtrunA17_Chr2g0296161 | 49.138 | 116 | 58 | 1 | 229 | 343 | 43 | 158 | 1.22e-27 | 109 |
| Msa1444480 | MtrunA17_Chr2g0296551 | 49.138 | 116 | 58 | 1 | 229 | 343 | 69 | 184 | 3.71e-27 | 108 |
| Msa1444480 | MtrunA17_Chr2g0296131 | 46.087 | 115 | 61 | 1 | 229 | 342 | 47 | 161 | 1.04e-26 | 106 |
| Msa1444480 | MtrunA17_Chr8g0377781 | 27.844 | 334 | 202 | 4 | 43 | 337 | 35 | 368 | 2.05e-26 | 111 |
| Msa1444480 | MtrunA17_Chr8g0377801 | 25.740 | 338 | 212 | 5 | 43 | 341 | 48 | 385 | 7.47e-23 | 100 |
| Msa1444480 | MtrunA17_Chr2g0296561 | 43.925 | 107 | 60 | 0 | 46 | 152 | 32 | 138 | 4.18e-22 | 92.8 |
| Msa1444480 | MtrunA17_Chr2g0295721 | 48.718 | 78 | 40 | 0 | 228 | 305 | 42 | 119 | 4.54e-19 | 83.2 |
| Msa1444480 | MtrunA17_Chr2g0287121 | 86.957 | 46 | 6 | 0 | 358 | 403 | 285 | 330 | 6.44e-18 | 85.9 |
| Msa1444480 | MtrunA17_Chr1g0212271 | 72.727 | 44 | 12 | 0 | 361 | 404 | 55 | 98 | 1.23e-16 | 77.4 |
| Msa1444480 | MtrunA17_Chr4g0067131 | 46.914 | 81 | 42 | 1 | 260 | 339 | 1 | 81 | 2.39e-16 | 74.3 |
| Msa1444480 | MtrunA17_Chr2g0287141 | 70.000 | 50 | 15 | 0 | 356 | 405 | 123 | 172 | 2.50e-16 | 78.2 |
| Msa1444480 | MtrunA17_Chr6g0472521 | 66.667 | 42 | 14 | 0 | 362 | 403 | 4 | 45 | 1.78e-13 | 65.9 |
| Msa1444480 | MtrunA17_Chr2g0287191 | 61.702 | 47 | 18 | 0 | 359 | 405 | 23 | 69 | 3.30e-13 | 66.2 |
| Msa1444480 | MtrunA17_Chr2g0292331 | 69.048 | 42 | 13 | 0 | 362 | 403 | 319 | 360 | 6.07e-13 | 70.9 |
| Msa1444480 | MtrunA17_Chr1g0212281 | 68.182 | 44 | 14 | 0 | 358 | 401 | 303 | 346 | 8.55e-13 | 70.5 |
| Msa1444480 | MtrunA17_Chr7g0215491 | 60.000 | 45 | 17 | 1 | 359 | 403 | 15 | 58 | 9.54e-13 | 64.7 |
| Msa1444480 | MtrunA17_Chr3g0121331 | 59.091 | 44 | 18 | 0 | 362 | 405 | 105 | 148 | 2.62e-12 | 65.9 |
| Msa1444480 | MtrunA17_Chr3g0080211 | 64.286 | 42 | 15 | 0 | 362 | 403 | 4 | 45 | 8.30e-12 | 62.0 |
| Msa1444480 | MtrunA17_Chr5g0409301 | 58.333 | 48 | 19 | 1 | 359 | 405 | 39 | 86 | 1.21e-11 | 62.4 |
| Msa1444480 | MtrunA17_Chr7g0228911 | 66.667 | 42 | 14 | 0 | 362 | 403 | 300 | 341 | 1.59e-11 | 66.2 |
| Msa1444480 | MtrunA17_Chr3g0078181 | 65.217 | 46 | 16 | 0 | 358 | 403 | 297 | 342 | 2.33e-11 | 65.9 |
| Msa1444480 | MtrunA17_Chr2g0317101 | 69.048 | 42 | 13 | 0 | 362 | 403 | 294 | 335 | 2.49e-11 | 65.5 |
| Msa1444480 | MtrunA17_Chr3g0086941 | 64.286 | 42 | 15 | 0 | 362 | 403 | 104 | 145 | 4.49e-11 | 62.4 |
| Msa1444480 | MtrunA17_Chr2g0287091 | 60.784 | 51 | 15 | 1 | 358 | 403 | 126 | 176 | 4.80e-11 | 62.8 |
| Msa1444480 | MtrunA17_Chr6g0453851 | 38.835 | 103 | 56 | 2 | 307 | 405 | 243 | 342 | 6.43e-11 | 64.3 |
| Msa1444480 | MtrunA17_Chr6g0454491 | 63.636 | 44 | 16 | 0 | 362 | 405 | 294 | 337 | 6.53e-11 | 64.3 |
| Msa1444480 | MtrunA17_Chr1g0212221 | 50.000 | 62 | 17 | 2 | 361 | 422 | 277 | 324 | 6.60e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444480 | AT5G07900.1 | 33.721 | 344 | 187 | 3 | 38 | 340 | 56 | 399 | 7.72e-59 | 201 |
| Msa1444480 | AT1G21150.1 | 32.121 | 330 | 183 | 4 | 50 | 338 | 55 | 384 | 2.30e-47 | 170 |
| Msa1444480 | AT1G21150.2 | 32.121 | 330 | 183 | 4 | 50 | 338 | 119 | 448 | 8.82e-47 | 170 |
| Msa1444480 | AT1G21150.3 | 31.902 | 326 | 181 | 4 | 54 | 338 | 23 | 348 | 7.25e-46 | 165 |
| Msa1444480 | AT1G61990.2 | 28.389 | 391 | 199 | 11 | 25 | 340 | 24 | 408 | 2.97e-33 | 132 |
| Msa1444480 | AT1G61990.1 | 28.389 | 391 | 199 | 11 | 25 | 340 | 24 | 408 | 2.97e-33 | 132 |
| Msa1444480 | AT1G62120.1 | 29.023 | 348 | 168 | 7 | 37 | 306 | 37 | 383 | 1.47e-31 | 127 |
| Msa1444480 | AT1G61970.2 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT1G61970.7 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT1G61970.6 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT1G61970.3 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT1G61970.5 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT1G61970.4 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT1G61970.1 | 27.344 | 384 | 197 | 11 | 37 | 340 | 34 | 415 | 5.79e-30 | 122 |
| Msa1444480 | AT3G46950.1 | 34.135 | 208 | 129 | 4 | 21 | 227 | 23 | 223 | 1.48e-29 | 122 |
| Msa1444480 | AT1G62085.1 | 36.413 | 184 | 105 | 3 | 30 | 202 | 26 | 208 | 1.01e-26 | 114 |
| Msa1444480 | AT1G62085.2 | 36.413 | 184 | 105 | 3 | 30 | 202 | 26 | 208 | 1.01e-26 | 114 |
| Msa1444480 | AT1G61980.3 | 38.462 | 156 | 92 | 2 | 48 | 201 | 49 | 202 | 3.79e-26 | 111 |
| Msa1444480 | AT1G61980.2 | 38.462 | 156 | 92 | 2 | 48 | 201 | 49 | 202 | 3.79e-26 | 111 |
| Msa1444480 | AT1G61980.1 | 38.462 | 156 | 92 | 2 | 48 | 201 | 49 | 202 | 3.79e-26 | 111 |
| Msa1444480 | AT1G61960.1 | 35.294 | 204 | 122 | 6 | 46 | 242 | 47 | 247 | 1.43e-25 | 110 |
| Msa1444480 | AT5G23930.1 | 30.565 | 301 | 174 | 11 | 48 | 338 | 52 | 327 | 1.38e-22 | 101 |
| Msa1444480 | AT1G62110.1 | 34.286 | 175 | 103 | 3 | 37 | 202 | 34 | 205 | 2.84e-22 | 100 |
| Msa1444480 | AT1G62110.1 | 24.468 | 188 | 133 | 3 | 148 | 326 | 252 | 439 | 2.98e-11 | 66.2 |
| Msa1444480 | AT1G62150.1 | 29.897 | 194 | 129 | 4 | 45 | 234 | 52 | 242 | 1.16e-20 | 95.5 |
| Msa1444480 | AT1G62010.1 | 25.581 | 301 | 152 | 5 | 76 | 306 | 63 | 361 | 7.48e-19 | 89.7 |
| Msa1444480 | AT1G56380.1 | 23.796 | 353 | 190 | 7 | 52 | 326 | 17 | 368 | 2.76e-18 | 87.4 |
| Msa1444480 | AT1G56380.2 | 25.141 | 354 | 184 | 9 | 52 | 326 | 28 | 379 | 2.79e-18 | 87.8 |
| Msa1444480 | AT5G64950.1 | 25.634 | 355 | 215 | 7 | 34 | 341 | 24 | 376 | 7.31e-18 | 86.3 |
| Msa1444480 | AT1G79220.1 | 29.151 | 271 | 174 | 8 | 87 | 346 | 119 | 382 | 6.65e-17 | 83.6 |
Find 100 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAAGATAGCAGGATTTC+TGG | 0.169200 | tig0030729:-30324 | None:intergenic |
| TGTCGTCCTCGGCTTGTTTC+CGG | 0.198431 | tig0030729:+34141 | Msa1444480:CDS |
| ATTCAAATCCTGCTTCAAAA+TGG | 0.214854 | tig0030729:+30476 | Msa1444480:CDS |
| GAGAGTTTGGAAGCAGTTTC+TGG | 0.219164 | tig0030729:-30095 | None:intergenic |
| CCTCTACGTGTATACTTTCT+AGG | 0.228711 | tig0030729:-34653 | None:intergenic |
| TTTGATTAAGGATGCTAAAT+TGG | 0.230774 | tig0030729:+30915 | Msa1444480:CDS |
| AACTATCTCATTCAAAATCT+TGG | 0.254769 | tig0030729:+30065 | Msa1444480:CDS |
| GAAACTGAATGTGAGGTTAT+TGG | 0.264454 | tig0030729:-29937 | None:intergenic |
| GTTTGGCTTATGAAGGAATA+TGG | 0.276457 | tig0030729:+32037 | Msa1444480:CDS |
| ATGAAGATTGTGTTACTGTT+AGG | 0.281001 | tig0030729:-29965 | None:intergenic |
| GTCGTCCTCGGCTTGTTTCC+GGG | 0.297036 | tig0030729:+34142 | Msa1444480:CDS |
| ACCAATTTCGAAACAAAATA+AGG | 0.302219 | tig0030729:-30517 | None:intergenic |
| TGGTTGTGAAAGTGTGATTT+TGG | 0.305443 | tig0030729:-30043 | None:intergenic |
| GCAAAGAAGCAGGAGGAAAA+AGG | 0.314178 | tig0030729:-33923 | None:intergenic |
| AAACTGAATGTGAGGTTATT+GGG | 0.314801 | tig0030729:-29936 | None:intergenic |
| GTGATACTTCTTCAGATGTT+TGG | 0.318377 | tig0030729:+32020 | Msa1444480:intron |
| TTCAAATCCTGCTTCAAAAT+GGG | 0.347056 | tig0030729:+30477 | Msa1444480:CDS |
| CGACTCTTTCCGAGCGGGCC+TGG | 0.349548 | tig0030729:+33875 | Msa1444480:CDS |
| AATATGGAAATAAAGATTCT+TGG | 0.353037 | tig0030729:+32053 | Msa1444480:CDS |
| GAGAGAAGAAAATTGAGTTT+TGG | 0.368041 | tig0030729:-30263 | None:intergenic |
| TTGAAATTTCTTGAGTCTAA+AGG | 0.377057 | tig0030729:+30892 | Msa1444480:CDS |
| TGAGTCTAAAGGTTTGATTA+AGG | 0.378829 | tig0030729:+30903 | Msa1444480:CDS |
| GTCCACACCTGTGCACTCTA+AGG | 0.399932 | tig0030729:+34550 | Msa1444480:CDS |
| GCTTCTCTGAGACCCTCATT+TGG | 0.401418 | tig0030729:-34520 | None:intergenic |
| AATAATGAAAGGACTGAGTC+TGG | 0.403254 | tig0030729:-30149 | None:intergenic |
| ACTATCTCATTCAAAATCTT+GGG | 0.413660 | tig0030729:+30066 | Msa1444480:CDS |
| GCTGCTCTTCGTCATGCTGC+TGG | 0.417285 | tig0030729:+33944 | Msa1444480:CDS |
| ATTAAGGATGCTAAATTGGC+TGG | 0.417571 | tig0030729:+30919 | Msa1444480:CDS |
| TTCAGATGTTTGGCTTATGA+AGG | 0.420224 | tig0030729:+32030 | Msa1444480:CDS |
| TGAAGATTGTGTTACTGTTA+GGG | 0.420451 | tig0030729:-29964 | None:intergenic |
| TTTGATGAGAGTTGATAGCT+GGG | 0.426496 | tig0030729:-30195 | None:intergenic |
| TTTGCTGAGTCTTGAGAAAA+GGG | 0.428056 | tig0030729:+30849 | Msa1444480:CDS |
| GACTCAGCAAAAGAAGTATT+GGG | 0.431337 | tig0030729:-30837 | None:intergenic |
| GCGCAATTTCAATGAAAGAT+AGG | 0.431403 | tig0030729:-35317 | None:intergenic |
| GCTGCTGGTCCGCTCTCTGC+TGG | 0.433259 | tig0030729:+33959 | Msa1444480:CDS |
| CTGCTTCATCTTCAATTCGA+AGG | 0.433473 | tig0030729:+34591 | Msa1444480:CDS |
| AGACTCAGCAAAAGAAGTAT+TGG | 0.433507 | tig0030729:-30838 | None:intergenic |
| AATGCCTTCTCAAATCTTGA+AGG | 0.433670 | tig0030729:-30560 | None:intergenic |
| TGCTTCATCTTCAATTCGAA+GGG | 0.435069 | tig0030729:+34592 | Msa1444480:CDS |
| ATTGTTATGTGTTCCTTACA+TGG | 0.472360 | tig0030729:+32081 | Msa1444480:CDS |
| GGATTCATTGTGGAGTTTCA+CGG | 0.474772 | tig0030729:+33896 | Msa1444480:CDS |
| TCCATTGGTTGCAGTGGAAG+GGG | 0.481383 | tig0030729:+35292 | Msa1444480:intron |
| AAGAAGAAGAAGAAAAGGGT+TGG | 0.484614 | tig0030729:-30004 | None:intergenic |
| TGCAGCCTTTGTGTCGTCCT+CGG | 0.491420 | tig0030729:+34130 | Msa1444480:CDS |
| TTCCATTGGTTGCAGTGGAA+GGG | 0.494354 | tig0030729:+35291 | Msa1444480:intron |
| ACGAAGAGCAGCAAAGAAGC+AGG | 0.504913 | tig0030729:-33933 | None:intergenic |
| GTATTTGTGCCGGGAAGAAA+AGG | 0.507804 | tig0030729:+34710 | Msa1444480:CDS |
| GTTCCTTACATGGGAGATGT+TGG | 0.507865 | tig0030729:+32091 | Msa1444480:CDS |
| GAAGTTTGTGTATTGCTTCG+AGG | 0.509974 | tig0030729:+30975 | Msa1444480:CDS |
| TGCTGCGACTCTTTCCGAGC+GGG | 0.514284 | tig0030729:+33870 | Msa1444480:CDS |
| TGAAACTCCACAATGAATCC+AGG | 0.514992 | tig0030729:-33893 | None:intergenic |
| TTCAAGATTTGAGAAGGCAT+TGG | 0.516289 | tig0030729:+30562 | Msa1444480:CDS |
| AAACACTCAGAAATTTGAAA+AGG | 0.519011 | tig0030729:-30943 | None:intergenic |
| TTCCTTACATGGGAGATGTT+GGG | 0.521607 | tig0030729:+32092 | Msa1444480:CDS |
| GACCCAACATCTCCCATGTA+AGG | 0.523350 | tig0030729:-32094 | None:intergenic |
| GGCATCTGTTCGTAAAATTG+AGG | 0.523840 | tig0030729:+30756 | Msa1444480:CDS |
| CTTTCATTATTCAAATCACA+TGG | 0.524934 | tig0030729:+30161 | Msa1444480:CDS |
| ATCTTTCATTGAAATTGCGC+AGG | 0.525160 | tig0030729:+35320 | Msa1444480:CDS |
| TACTTTCTAGGAAGAGTAGC+AGG | 0.526035 | tig0030729:-34641 | None:intergenic |
| AATGAGGGTCTCAGAGAAGC+TGG | 0.526173 | tig0030729:+34523 | Msa1444480:CDS |
| AAGATTTGAGAAGGCATTGG+TGG | 0.528058 | tig0030729:+30565 | Msa1444480:CDS |
| ATGGATTTAGCATCCAAATG+AGG | 0.533711 | tig0030729:+34507 | Msa1444480:intron |
| AAAGTATACACGTAGAGGCT+TGG | 0.536780 | tig0030729:+34658 | Msa1444480:CDS |
| TCAAATCCTGCTTCAAAATG+GGG | 0.541281 | tig0030729:+30478 | Msa1444480:CDS |
| CTCAGTAAGATAAAGTGCCT+TGG | 0.552845 | tig0030729:-32128 | None:intergenic |
| TTGTTATGTGTTCCTTACAT+GGG | 0.561059 | tig0030729:+32082 | Msa1444480:CDS |
| GAAGTATCCATGGTGTATGT+TGG | 0.562557 | tig0030729:+30735 | Msa1444480:CDS |
| GAGCGGGCCTGGATTCATTG+TGG | 0.569080 | tig0030729:+33886 | Msa1444480:CDS |
| AACTGAATGTGAGGTTATTG+GGG | 0.569321 | tig0030729:-29935 | None:intergenic |
| AGATAGAAGAGTATTTGTGC+CGG | 0.573160 | tig0030729:+34700 | Msa1444480:CDS |
| GATAGAAGAGTATTTGTGCC+GGG | 0.580180 | tig0030729:+34701 | Msa1444480:CDS |
| TTTGATAAAATGATAACAAG+GGG | 0.581767 | tig0030729:-30369 | None:intergenic |
| GATAGAACCTTAGAGTGCAC+AGG | 0.582549 | tig0030729:-34557 | None:intergenic |
| CATGTGATTTGAATAATGAA+AGG | 0.586958 | tig0030729:-30160 | None:intergenic |
| TTCTGGTGATGATTTGAACA+AGG | 0.591029 | tig0030729:-30307 | None:intergenic |
| AATTTCAAGACAAAAGCTCT+AGG | 0.592288 | tig0030729:-30877 | None:intergenic |
| AACCTTAGAGTGCACAGGTG+TGG | 0.593401 | tig0030729:-34552 | None:intergenic |
| TGGATTTAGCATCCAAATGA+GGG | 0.594447 | tig0030729:+34508 | Msa1444480:intron |
| CACAAATACTCTTCTATCTG+CGG | 0.598706 | tig0030729:-34696 | None:intergenic |
| AGAGGCTTGGCGTCAATGAG+AGG | 0.601015 | tig0030729:+34671 | Msa1444480:CDS |
| GAAGCCTTCAAGATTTGAGA+AGG | 0.601085 | tig0030729:+30556 | Msa1444480:CDS |
| ACAAGCCGAGGACGACACAA+AGG | 0.613718 | tig0030729:-34135 | None:intergenic |
| CCTAGAAAGTATACACGTAG+AGG | 0.622996 | tig0030729:+34653 | Msa1444480:CDS |
| AAGAGCAGCAAAGAAGCAGG+AGG | 0.626716 | tig0030729:-33930 | None:intergenic |
| GCTTCATCTTCAATTCGAAG+GGG | 0.627576 | tig0030729:+34593 | Msa1444480:CDS |
| AAAATAAGGACTTTAGACTC+AGG | 0.629406 | tig0030729:-30503 | None:intergenic |
| ACAATGAATCCAGGCCCGCT+CGG | 0.636577 | tig0030729:-33884 | None:intergenic |
| CAAGGCACTTTATCTTACTG+AGG | 0.645344 | tig0030729:+32129 | Msa1444480:CDS |
| ATTGATGTGTATAAGAAATG+GGG | 0.652614 | tig0030729:+30679 | Msa1444480:intron |
| GCCGGGAAGAAAAGGAGGAA+AGG | 0.658259 | tig0030729:+34718 | Msa1444480:CDS |
| GGGAAAATACCAGCAGAGAG+CGG | 0.666547 | tig0030729:-33968 | None:intergenic |
| TCGAATTGAAGATGAAGCAG+CGG | 0.670732 | tig0030729:-34588 | None:intergenic |
| ACAGATGCCAACATACACCA+TGG | 0.670800 | tig0030729:-30742 | None:intergenic |
| GATTTGAATATTCTGAGACG+TGG | 0.672392 | tig0030729:-30462 | None:intergenic |
| TTTGTGCCGGGAAGAAAAGG+AGG | 0.683202 | tig0030729:+34713 | Msa1444480:CDS |
| ATGTGTATAAGAAATGGGGT+TGG | 0.700509 | tig0030729:+30683 | Msa1444480:intron |
| TGGGTCGTATCTTTATACCA+AGG | 0.701695 | tig0030729:+32111 | Msa1444480:CDS |
| GAGTACCCGGAAACAAGCCG+AGG | 0.703564 | tig0030729:-34147 | None:intergenic |
| TTTCTAGGAAGAGTAGCAGG+TGG | 0.728231 | tig0030729:-34638 | None:intergenic |
| TTGCTGCGACTCTTTCCGAG+CGG | 0.739548 | tig0030729:+33869 | Msa1444480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAAAAAAATCCTT+TGG | + | tig0030729:30647-30666 | Msa1444480:intron | 10.0% |
| !! | AATTAATAAAAAAATCCTTT+GGG | + | tig0030729:30648-30667 | Msa1444480:intron | 10.0% |
| !!! | TTTTGATAAAATGATAACAA+GGG | - | tig0030729:30373-30392 | None:intergenic | 15.0% |
| !!! | TCAAAGTATAAATAATTTGT+AGG | + | tig0030729:33292-33311 | Msa1444480:intron | 15.0% |
| !! | AATTATATTTCAATACTTAC+TGG | + | tig0030729:33485-33504 | Msa1444480:intron | 15.0% |
| !!! | AAAATAAATTGGTGTTTTTA+TGG | + | tig0030729:34226-34245 | Msa1444480:intron | 15.0% |
| !! | AAAAAAAAAAAATGCAACAA+TGG | + | tig0030729:34488-34507 | Msa1444480:intron | 15.0% |
| !! | AAATACAGAATAGTTTAATA+GGG | - | tig0030729:34950-34969 | None:intergenic | 15.0% |
| !! | AAAATACAGAATAGTTTAAT+AGG | - | tig0030729:34951-34970 | None:intergenic | 15.0% |
| !! | TGCTATATATATATGATATT+AGG | + | tig0030729:35250-35269 | Msa1444480:intron | 15.0% |
| !! | TTTGATAAAATGATAACAAG+GGG | - | tig0030729:30372-30391 | None:intergenic | 20.0% |
| !!! | CTTTTGATAAAATGATAACA+AGG | - | tig0030729:30374-30393 | None:intergenic | 20.0% |
| !!! | GAAACATGAGTTATTTATTT+TGG | + | tig0030729:31578-31597 | Msa1444480:intron | 20.0% |
| !!! | AAGATGTCATATTTTTTATG+AGG | - | tig0030729:31958-31977 | None:intergenic | 20.0% |
| !! | AAAAATATGACATCTTGATT+TGG | + | tig0030729:31962-31981 | Msa1444480:intron | 20.0% |
| !! | AATATGGAAATAAAGATTCT+TGG | + | tig0030729:32053-32072 | Msa1444480:CDS | 20.0% |
| !! | CTGAAATTCAAAACATTAAT+GGG | + | tig0030729:32225-32244 | Msa1444480:intron | 20.0% |
| !!! | TAATACTTTAATTTAGTCGA+TGG | + | tig0030729:32497-32516 | Msa1444480:intron | 20.0% |
| !! | TAATTGTACACTTCATTATA+TGG | + | tig0030729:32540-32559 | Msa1444480:intron | 20.0% |
| !! | CATTTGAATAAAATTAGTGT+TGG | - | tig0030729:32953-32972 | None:intergenic | 20.0% |
| !!! | AATCATTCTAAAAGCATTTA+TGG | - | tig0030729:33261-33280 | None:intergenic | 20.0% |
| !!! | ATGCTTTTAGAATGATTTTA+TGG | + | tig0030729:33264-33283 | Msa1444480:intron | 20.0% |
| !! | CATTTCATACTACTTAATTT+GGG | - | tig0030729:34319-34338 | None:intergenic | 20.0% |
| !! | ACATTTCATACTACTTAATT+TGG | - | tig0030729:34320-34339 | None:intergenic | 20.0% |
| !! | AATAGTAAAAGTCTAAAAGA+AGG | - | tig0030729:34808-34827 | None:intergenic | 20.0% |
| !!! | TTCTTTTAGACTTTTACTAT+TGG | + | tig0030729:34807-34826 | Msa1444480:intron | 20.0% |
| !! | ATGATATTTGAACATCTATT+TGG | + | tig0030729:35055-35074 | Msa1444480:intron | 20.0% |
| !!! | TACTTTTTCTTTGTAAATTG+TGG | + | tig0030729:35151-35170 | Msa1444480:intron | 20.0% |
| !! | ATATATATATAGCAATGTTG+GGG | - | tig0030729:35244-35263 | None:intergenic | 20.0% |
| !! | CATATATATATAGCAATGTT+GGG | - | tig0030729:35245-35264 | None:intergenic | 20.0% |
| !! | TCATATATATATAGCAATGT+TGG | - | tig0030729:35246-35265 | None:intergenic | 20.0% |
| !! | ATTATATCATGAATTTCCAT+TGG | + | tig0030729:35277-35296 | Msa1444480:intron | 20.0% |
| !! | AAGATTTTGAATGAGATAGT+TGG | - | tig0030729:30066-30085 | None:intergenic | 25.0% |
| ! | AACTATCTCATTCAAAATCT+TGG | + | tig0030729:30065-30084 | Msa1444480:CDS | 25.0% |
| ! | ACTATCTCATTCAAAATCTT+GGG | + | tig0030729:30066-30085 | Msa1444480:CDS | 25.0% |
| ! | CATGTGATTTGAATAATGAA+AGG | - | tig0030729:30163-30182 | None:intergenic | 25.0% |
| ! | CTTTCATTATTCAAATCACA+TGG | + | tig0030729:30161-30180 | Msa1444480:CDS | 25.0% |
| !! | GATCTAAAGAGAGAATTTTT+GGG | - | tig0030729:30226-30245 | None:intergenic | 25.0% |
| !!! | TTTGGAAGAATGGTTTTATT+GGG | - | tig0030729:30248-30267 | None:intergenic | 25.0% |
| !!! | TTTTGGAAGAATGGTTTTAT+TGG | - | tig0030729:30249-30268 | None:intergenic | 25.0% |
| !!! | AAAATTGAGTTTTGGAAGAA+TGG | - | tig0030729:30258-30277 | None:intergenic | 25.0% |
| !! | AAGCTTTTATAAAAGATAGC+AGG | - | tig0030729:30335-30354 | None:intergenic | 25.0% |
| !! | TGCTATCTTTTATAAAAGCT+TGG | + | tig0030729:30334-30353 | Msa1444480:CDS | 25.0% |
| !!! | TCCTTATTTTGTTTCGAAAT+TGG | + | tig0030729:30516-30535 | Msa1444480:CDS | 25.0% |
| ! | ACCAATTTCGAAACAAAATA+AGG | - | tig0030729:30520-30539 | None:intergenic | 25.0% |
| !!! | ACAATGAAAACAGTTGTTTT+GGG | - | tig0030729:30613-30632 | None:intergenic | 25.0% |
| !! | AACAATGAAAACAGTTGTTT+TGG | - | tig0030729:30614-30633 | None:intergenic | 25.0% |
| !! | ATAAAAAAATCCTTTGGGAA+AGG | + | tig0030729:30653-30672 | Msa1444480:intron | 25.0% |
| ! | AGATTGATGTGTATAAGAAA+TGG | + | tig0030729:30677-30696 | Msa1444480:intron | 25.0% |
| ! | GATTGATGTGTATAAGAAAT+GGG | + | tig0030729:30678-30697 | Msa1444480:intron | 25.0% |
| ! | ATTGATGTGTATAAGAAATG+GGG | + | tig0030729:30679-30698 | Msa1444480:intron | 25.0% |
| !!! | GAAATTTTTTGTTGATCACA+TGG | + | tig0030729:30786-30805 | Msa1444480:CDS | 25.0% |
| ! | TTGAAATTTCTTGAGTCTAA+AGG | + | tig0030729:30892-30911 | Msa1444480:CDS | 25.0% |
| ! | TTTGATTAAGGATGCTAAAT+TGG | + | tig0030729:30915-30934 | Msa1444480:CDS | 25.0% |
| ! | AAACACTCAGAAATTTGAAA+AGG | - | tig0030729:30946-30965 | None:intergenic | 25.0% |
| ! | AGAAAAAAGATGTTTCCAAT+AGG | + | tig0030729:31031-31050 | Msa1444480:CDS | 25.0% |
| !!! | ATCTTTTTTCAACATCCTAT+TGG | - | tig0030729:31049-31068 | None:intergenic | 25.0% |
| ! | AATCAATGAAGGAATCTTAT+AGG | - | tig0030729:31294-31313 | None:intergenic | 25.0% |
| !! | AAGATTCCTTCATTGATTAA+AGG | + | tig0030729:31296-31315 | Msa1444480:intron | 25.0% |
| !! | AGATTCCTTCATTGATTAAA+GGG | + | tig0030729:31297-31316 | Msa1444480:intron | 25.0% |
| ! | AATATGGGTGAAAAATTCTA+AGG | + | tig0030729:31513-31532 | Msa1444480:intron | 25.0% |
| !!! | TGAAAAATTCTAAGGTCTTT+TGG | + | tig0030729:31521-31540 | Msa1444480:intron | 25.0% |
| !!! | GAGTTATTTATTTTGGTATG+CGG | + | tig0030729:31585-31604 | Msa1444480:intron | 25.0% |
| ! | GGTGATATCTCTATAAAATA+AGG | + | tig0030729:31606-31625 | Msa1444480:intron | 25.0% |
| !! | GTATAATACAATTTTGCTTG+TGG | + | tig0030729:31700-31719 | Msa1444480:intron | 25.0% |
| ! | ATATGTCTTAGAGTTGAATA+AGG | + | tig0030729:31911-31930 | Msa1444480:intron | 25.0% |
| ! | TATGTCTTAGAGTTGAATAA+GGG | + | tig0030729:31912-31931 | Msa1444480:intron | 25.0% |
| !!! | CCATTAATGTTTTGAATTTC+AGG | - | tig0030729:32227-32246 | None:intergenic | 25.0% |
| ! | CCTGAAATTCAAAACATTAA+TGG | + | tig0030729:32224-32243 | Msa1444480:intron | 25.0% |
| ! | AAATTCAAAACATTAATGGG+TGG | + | tig0030729:32228-32247 | Msa1444480:intron | 25.0% |
| !! | TATTTTTCCTTATTAGTCGA+TGG | + | tig0030729:32441-32460 | Msa1444480:intron | 25.0% |
| ! | TACCATAGAAAATAGGAATT+AGG | + | tig0030729:32999-33018 | Msa1444480:intron | 25.0% |
| !! | AACCTAATTCCTATTTTCTA+TGG | - | tig0030729:33004-33023 | None:intergenic | 25.0% |
| ! | TTGTTGAGGTTAAACATATA+TGG | + | tig0030729:33141-33160 | Msa1444480:intron | 25.0% |
| !! | AACATATATGGAGTTTGTTT+AGG | + | tig0030729:33153-33172 | Msa1444480:intron | 25.0% |
| ! | AGCAAATATGTATTACTTAC+AGG | + | tig0030729:33519-33538 | Msa1444480:intron | 25.0% |
| ! | ATATAAACTCAATCTAACTG+TGG | + | tig0030729:33648-33667 | Msa1444480:intron | 25.0% |
| ! | TAGAAGAACACAAGAAAAAA+GGG | - | tig0030729:34103-34122 | None:intergenic | 25.0% |
| !! | CCATTAAAAACACTTGATTT+TGG | - | tig0030729:34181-34200 | None:intergenic | 25.0% |
| !!! | CCAAAATCAAGTGTTTTTAA+TGG | + | tig0030729:34178-34197 | Msa1444480:intron | 25.0% |
| ! | TATTCAACTAAAATACTCCA+CGG | - | tig0030729:34344-34363 | None:intergenic | 25.0% |
| ! | AAAATTATACTGTACCACAT+TGG | - | tig0030729:34389-34408 | None:intergenic | 25.0% |
| ! | CATAATGTCTAACTAAAACA+TGG | - | tig0030729:35026-35045 | None:intergenic | 25.0% |
| !!! | AAGAAAAAGTAGTATTGACA+CGG | - | tig0030729:35142-35161 | None:intergenic | 25.0% |
| !!! | ACTGATTTGAACAACTAATT+TGG | - | tig0030729:35183-35202 | None:intergenic | 25.0% |
| ! | AAATTAGTTGTTCAAATCAG+TGG | + | tig0030729:35182-35201 | Msa1444480:intron | 25.0% |
| ! | TATATATATAGCAATGTTGG+GGG | - | tig0030729:35243-35262 | None:intergenic | 25.0% |
| AAACTGAATGTGAGGTTATT+GGG | - | tig0030729:29939-29958 | None:intergenic | 30.0% | |
| ! | TGAAGATTGTGTTACTGTTA+GGG | - | tig0030729:29967-29986 | None:intergenic | 30.0% |
| ! | ATGAAGATTGTGTTACTGTT+AGG | - | tig0030729:29968-29987 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAGAAAA+GGG | - | tig0030729:30011-30030 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAAGAAA+AGG | - | tig0030729:30012-30031 | None:intergenic | 30.0% | |
| ! | TTGAATTTTGTTGGAGAGTT+TGG | - | tig0030729:30111-30130 | None:intergenic | 30.0% |
| ! | GGATCTAAAGAGAGAATTTT+TGG | - | tig0030729:30227-30246 | None:intergenic | 30.0% |
| ! | GAGAGAAGAAAATTGAGTTT+TGG | - | tig0030729:30266-30285 | None:intergenic | 30.0% |
| ! | ACTCAATTTTCTTCTCTCAA+AGG | + | tig0030729:30268-30287 | Msa1444480:CDS | 30.0% |
| ! | CTCAATTTTCTTCTCTCAAA+GGG | + | tig0030729:30269-30288 | Msa1444480:CDS | 30.0% |
| ATAAAAGATAGCAGGATTTC+TGG | - | tig0030729:30327-30346 | None:intergenic | 30.0% | |
| ATTCAAATCCTGCTTCAAAA+TGG | + | tig0030729:30476-30495 | Msa1444480:CDS | 30.0% | |
| TTCAAATCCTGCTTCAAAAT+GGG | + | tig0030729:30477-30496 | Msa1444480:CDS | 30.0% | |
| AAAATAAGGACTTTAGACTC+AGG | - | tig0030729:30506-30525 | None:intergenic | 30.0% | |
| TTGGTGGAAGTAAATGAATT+AGG | + | tig0030729:30581-30600 | Msa1444480:intron | 30.0% | |
| ! | TTTTTGTTGATCACATGGAT+TGG | + | tig0030729:30791-30810 | Msa1444480:CDS | 30.0% |
| AATTTCAAGACAAAAGCTCT+AGG | - | tig0030729:30880-30899 | None:intergenic | 30.0% | |
| TGAGTCTAAAGGTTTGATTA+AGG | + | tig0030729:30903-30922 | Msa1444480:CDS | 30.0% | |
| AATCTGAGAAGTTACATCAA+GGG | + | tig0030729:31094-31113 | Msa1444480:intron | 30.0% | |
| !!! | TAGAAGCTTGTTTTGAAGAT+AGG | + | tig0030729:31168-31187 | Msa1444480:intron | 30.0% |
| !!! | TCTCACATCTGTGATTTTTT+GGG | + | tig0030729:31209-31228 | Msa1444480:intron | 30.0% |
| ! | GTTTTCCCTTTAATCAATGA+AGG | - | tig0030729:31305-31324 | None:intergenic | 30.0% |
| ACAAGTAATCCTAGTCTAAA+TGG | - | tig0030729:31333-31352 | None:intergenic | 30.0% | |
| ! | CACCAGAGCATTTAAAATAT+GGG | + | tig0030729:31498-31517 | Msa1444480:intron | 30.0% |
| !!! | AAATTCTAAGGTCTTTTGGA+TGG | + | tig0030729:31525-31544 | Msa1444480:intron | 30.0% |
| TCTCTATAAAATAAGGTCGT+TGG | + | tig0030729:31613-31632 | Msa1444480:intron | 30.0% | |
| AATTTCTGTCAAACCGAAAA+GGG | - | tig0030729:31847-31866 | None:intergenic | 30.0% | |
| AAATTTCTGTCAAACCGAAA+AGG | - | tig0030729:31848-31867 | None:intergenic | 30.0% | |
| !! | TTTTCGGTTTGACAGAAATT+TGG | + | tig0030729:31847-31866 | Msa1444480:intron | 30.0% |
| ATGTCTTAGAGTTGAATAAG+GGG | + | tig0030729:31913-31932 | Msa1444480:intron | 30.0% | |
| ATTGTTATGTGTTCCTTACA+TGG | + | tig0030729:32081-32100 | Msa1444480:CDS | 30.0% | |
| TTGTTATGTGTTCCTTACAT+GGG | + | tig0030729:32082-32101 | Msa1444480:CDS | 30.0% | |
| ACTCAACTTGATATTTGAGT+AGG | - | tig0030729:32166-32185 | None:intergenic | 30.0% | |
| !! | ACTCAAATATCAAGTTGAGT+TGG | + | tig0030729:32166-32185 | Msa1444480:intron | 30.0% |
| ! | GTTGTTTACAATTCTAGAGA+TGG | + | tig0030729:32188-32207 | Msa1444480:intron | 30.0% |
| AATGTGATATCAAACTTTCC+TGG | - | tig0030729:32271-32290 | None:intergenic | 30.0% | |
| GTTTATAAAGAACTCACTAC+TGG | + | tig0030729:32352-32371 | Msa1444480:intron | 30.0% | |
| TAAAGTAACCAGCAAACATA+AGG | - | tig0030729:32416-32435 | None:intergenic | 30.0% | |
| ! | ACATATTCCATCGACTAATA+AGG | - | tig0030729:32451-32470 | None:intergenic | 30.0% |
| ACACTTCATTATATGGTTAG+TGG | + | tig0030729:32547-32566 | Msa1444480:intron | 30.0% | |
| TCATTATATGGTTAGTGGTT+TGG | + | tig0030729:32552-32571 | Msa1444480:intron | 30.0% | |
| GAATCACAATTCTTTGCATT+TGG | - | tig0030729:32735-32754 | None:intergenic | 30.0% | |
| !! | TATCGCTGTTTTCTATACTT+AGG | + | tig0030729:32854-32873 | Msa1444480:intron | 30.0% |
| CTCATAAAGGGTTCAAAATT+TGG | - | tig0030729:32911-32930 | None:intergenic | 30.0% | |
| ! | CAAATTTTGAACCCTTTATG+AGG | + | tig0030729:32909-32928 | Msa1444480:intron | 30.0% |
| CTCATGATACCATAGAAAAT+AGG | + | tig0030729:32992-33011 | Msa1444480:intron | 30.0% | |
| AATCATATGCTGATAGAATG+AGG | - | tig0030729:33324-33343 | None:intergenic | 30.0% | |
| ATATGCATGAGGAATTAACA+TGG | - | tig0030729:33423-33442 | None:intergenic | 30.0% | |
| GTTTCTCAGAAAAGATGTAT+CGG | + | tig0030729:33678-33697 | Msa1444480:intron | 30.0% | |
| AGCCATTTACTGATCAAATA+AGG | + | tig0030729:33788-33807 | Msa1444480:intron | 30.0% | |
| ! | CACCTTATTTGATCAGTAAA+TGG | - | tig0030729:33793-33812 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGCAGTTCTGTTT+TGG | + | tig0030729:34049-34068 | Msa1444480:intron | 30.0% |
| GTAGAAGAACACAAGAAAAA+AGG | - | tig0030729:34104-34123 | None:intergenic | 30.0% | |
| ! | TACTACTTAATTTGGGACTT+AGG | - | tig0030729:34312-34331 | None:intergenic | 30.0% |
| TTCAAGTCAAAACACAATAC+AGG | + | tig0030729:34862-34881 | Msa1444480:intron | 30.0% | |
| CTAATCGTAACATATCTCAA+AGG | - | tig0030729:34915-34934 | None:intergenic | 30.0% | |
| ! | CTCAGAAAAGTTTTCTATAG+TGG | + | tig0030729:34980-34999 | Msa1444480:intron | 30.0% |
| AAAACATGGCAAGTGTTAAT+GGG | - | tig0030729:35012-35031 | None:intergenic | 30.0% | |
| TAAAACATGGCAAGTGTTAA+TGG | - | tig0030729:35013-35032 | None:intergenic | 30.0% | |
| ACTTTATCTCTCTATTGCTA+TGG | + | tig0030729:35113-35132 | Msa1444480:intron | 30.0% | |
| AACTGAATGTGAGGTTATTG+GGG | - | tig0030729:29938-29957 | None:intergenic | 35.0% | |
| GAAACTGAATGTGAGGTTAT+TGG | - | tig0030729:29940-29959 | None:intergenic | 35.0% | |
| AAGAAGAAGAAGAAAAGGGT+TGG | - | tig0030729:30007-30026 | None:intergenic | 35.0% | |
| !! | GGTTGTGAAAGTGTGATTTT+GGG | - | tig0030729:30045-30064 | None:intergenic | 35.0% |
| !! | TGGTTGTGAAAGTGTGATTT+TGG | - | tig0030729:30046-30065 | None:intergenic | 35.0% |
| !!! | GTCGTTGAGTTGAATTTTGT+TGG | - | tig0030729:30120-30139 | None:intergenic | 35.0% |
| AATAATGAAAGGACTGAGTC+TGG | - | tig0030729:30152-30171 | None:intergenic | 35.0% | |
| !! | TTTGATGAGAGTTGATAGCT+GGG | - | tig0030729:30198-30217 | None:intergenic | 35.0% |
| !!! | TTTTGATGAGAGTTGATAGC+TGG | - | tig0030729:30199-30218 | None:intergenic | 35.0% |
| ! | TTCTGGTGATGATTTGAACA+AGG | - | tig0030729:30310-30329 | None:intergenic | 35.0% |
| !! | GATTTGAATATTCTGAGACG+TGG | - | tig0030729:30465-30484 | None:intergenic | 35.0% |
| TCAAATCCTGCTTCAAAATG+GGG | + | tig0030729:30478-30497 | Msa1444480:CDS | 35.0% | |
| AATGCCTTCTCAAATCTTGA+AGG | - | tig0030729:30563-30582 | None:intergenic | 35.0% | |
| ! | TTCAAGATTTGAGAAGGCAT+TGG | + | tig0030729:30562-30581 | Msa1444480:CDS | 35.0% |
| ATGTGTATAAGAAATGGGGT+TGG | + | tig0030729:30683-30702 | Msa1444480:intron | 35.0% | |
| !!! | CAGCATTTTTGAAGTATCCA+TGG | + | tig0030729:30725-30744 | Msa1444480:CDS | 35.0% |
| !! | GACTCAGCAAAAGAAGTATT+GGG | - | tig0030729:30840-30859 | None:intergenic | 35.0% |
| ! | AGACTCAGCAAAAGAAGTAT+TGG | - | tig0030729:30841-30860 | None:intergenic | 35.0% |
| ! | TTTTGCTGAGTCTTGAGAAA+AGG | + | tig0030729:30848-30867 | Msa1444480:CDS | 35.0% |
| TTTGCTGAGTCTTGAGAAAA+GGG | + | tig0030729:30849-30868 | Msa1444480:CDS | 35.0% | |
| ATTAAGGATGCTAAATTGGC+TGG | + | tig0030729:30919-30938 | Msa1444480:CDS | 35.0% | |
| ! | AAGATTTTAAGCCGTGAGAT+TGG | + | tig0030729:31064-31083 | Msa1444480:intron | 35.0% |
| CAATCTGAGAAGTTACATCA+AGG | + | tig0030729:31093-31112 | Msa1444480:intron | 35.0% | |
| !!! | GTCTCACATCTGTGATTTTT+TGG | + | tig0030729:31208-31227 | Msa1444480:intron | 35.0% |
| !!! | CTCACATCTGTGATTTTTTG+GGG | + | tig0030729:31210-31229 | Msa1444480:intron | 35.0% |
| !!! | TCACATCTGTGATTTTTTGG+GGG | + | tig0030729:31211-31230 | Msa1444480:intron | 35.0% |
| AAACCACAACCATTTAGACT+AGG | + | tig0030729:31321-31340 | Msa1444480:intron | 35.0% | |
| AATCCTAGTCTAAATGGTTG+TGG | - | tig0030729:31327-31346 | None:intergenic | 35.0% | |
| AATAGGCAAAAGATGGAAGA+CGG | - | tig0030729:31413-31432 | None:intergenic | 35.0% | |
| TGCAACAAATAGGCAAAAGA+TGG | - | tig0030729:31420-31439 | None:intergenic | 35.0% | |
| CACATGGATATGCAACAAAT+AGG | - | tig0030729:31430-31449 | None:intergenic | 35.0% | |
| TCTTGACAAAATGACACACA+TGG | - | tig0030729:31446-31465 | None:intergenic | 35.0% | |
| ! | GGATTTATTGCTCCATGTTT+TGG | - | tig0030729:31479-31498 | None:intergenic | 35.0% |
| !! | CCATATTTTAAATGCTCTGG+TGG | - | tig0030729:31500-31519 | None:intergenic | 35.0% |
| ! | CCACCAGAGCATTTAAAATA+TGG | + | tig0030729:31497-31516 | Msa1444480:intron | 35.0% |
| !! | CACCCATATTTTAAATGCTC+TGG | - | tig0030729:31503-31522 | None:intergenic | 35.0% |
| !! | ATCTTGATTTGGAGTGTTGA+GGG | + | tig0030729:31973-31992 | Msa1444480:intron | 35.0% |
| GTGATACTTCTTCAGATGTT+TGG | + | tig0030729:32020-32039 | Msa1444480:intron | 35.0% | |
| ! | TTCAGATGTTTGGCTTATGA+AGG | + | tig0030729:32030-32049 | Msa1444480:CDS | 35.0% |
| ! | GTTTGGCTTATGAAGGAATA+TGG | + | tig0030729:32037-32056 | Msa1444480:CDS | 35.0% |
| TTGATATTTGAGTAGGCACT+TGG | - | tig0030729:32159-32178 | None:intergenic | 35.0% | |
| ! | TCAAAACATTAATGGGTGGA+TGG | + | tig0030729:32232-32251 | Msa1444480:intron | 35.0% |
| TTATAAACCTCATGCACAAG+TGG | - | tig0030729:32340-32359 | None:intergenic | 35.0% | |
| TAACATACAAGTTGCAGCTA+GGG | - | tig0030729:32389-32408 | None:intergenic | 35.0% | |
| TTAACATACAAGTTGCAGCT+AGG | - | tig0030729:32390-32409 | None:intergenic | 35.0% | |
| !!! | GTCGATGGATAGTTTTTTGT+TGG | + | tig0030729:32512-32531 | Msa1444480:intron | 35.0% |
| ! | ATGGTTAGTGGTTTGGAATT+AGG | + | tig0030729:32559-32578 | Msa1444480:intron | 35.0% |
| !! | GAATTAGGTTTTATGCCCTT+TGG | + | tig0030729:32574-32593 | Msa1444480:intron | 35.0% |
| ! | TATATGGAGTTTGTTTAGGC+TGG | + | tig0030729:33157-33176 | Msa1444480:intron | 35.0% |
| !! | TAAAAGCATTTATGGAGACC+AGG | - | tig0030729:33253-33272 | None:intergenic | 35.0% |
| GTGTTTGAGAAATATGCATG+AGG | - | tig0030729:33434-33453 | None:intergenic | 35.0% | |
| AGTGTAAGAGTTCTACGTAT+TGG | - | tig0030729:33590-33609 | None:intergenic | 35.0% | |
| ! | GGGTTTTTACATAAGGATCA+TGG | - | tig0030729:33752-33771 | None:intergenic | 35.0% |
| !! | CAGGGGCTTCTTTAAAATTT+CGG | + | tig0030729:34015-34034 | Msa1444480:intron | 35.0% |
| AAGTAGTATGAAATGTTCCG+TGG | + | tig0030729:34324-34343 | Msa1444480:intron | 35.0% | |
| ATGGATTTAGCATCCAAATG+AGG | + | tig0030729:34507-34526 | Msa1444480:intron | 35.0% | |
| TGGATTTAGCATCCAAATGA+GGG | + | tig0030729:34508-34527 | Msa1444480:intron | 35.0% | |
| TGCTTCATCTTCAATTCGAA+GGG | + | tig0030729:34592-34611 | Msa1444480:CDS | 35.0% | |
| CACAAATACTCTTCTATCTG+CGG | - | tig0030729:34699-34718 | None:intergenic | 35.0% | |
| !! | AGATAGAAGAGTATTTGTGC+CGG | + | tig0030729:34700-34719 | Msa1444480:CDS | 35.0% |
| !! | CTAAAAGAAGGTGCTTTACA+CGG | - | tig0030729:34796-34815 | None:intergenic | 35.0% |
| TATTGGAACTTATCTTCCAC+AGG | + | tig0030729:34824-34843 | Msa1444480:intron | 35.0% | |
| ATTGGAACTTATCTTCCACA+GGG | + | tig0030729:34825-34844 | Msa1444480:intron | 35.0% | |
| TCGTAACATATCTCAAAGGA+GGG | - | tig0030729:34911-34930 | None:intergenic | 35.0% | |
| ATCGTAACATATCTCAAAGG+AGG | - | tig0030729:34912-34931 | None:intergenic | 35.0% | |
| TTAGTTGTTCAAATCAGTGG+CGG | + | tig0030729:35185-35204 | Msa1444480:intron | 35.0% | |
| GCGCAATTTCAATGAAAGAT+AGG | - | tig0030729:35320-35339 | None:intergenic | 35.0% | |
| ATCTTTCATTGAAATTGCGC+AGG | + | tig0030729:35320-35339 | Msa1444480:CDS | 35.0% | |
| !!! | GGGTTTTGAAACTGAATGTG+AGG | - | tig0030729:29947-29966 | None:intergenic | 40.0% |
| GAAGCCTTCAAGATTTGAGA+AGG | + | tig0030729:30556-30575 | Msa1444480:CDS | 40.0% | |
| !! | AAGATTTGAGAAGGCATTGG+TGG | + | tig0030729:30565-30584 | Msa1444480:CDS | 40.0% |
| CATCAATCTTCCTTTCCCAA+AGG | - | tig0030729:30666-30685 | None:intergenic | 40.0% | |
| ! | GAAGTATCCATGGTGTATGT+TGG | + | tig0030729:30735-30754 | Msa1444480:CDS | 40.0% |
| GGCATCTGTTCGTAAAATTG+AGG | + | tig0030729:30756-30775 | Msa1444480:CDS | 40.0% | |
| GAAGTTTGTGTATTGCTTCG+AGG | + | tig0030729:30975-30994 | Msa1444480:CDS | 40.0% | |
| TCAAATCCAGTAGATGACCA+TGG | - | tig0030729:31134-31153 | None:intergenic | 40.0% | |
| TGGTCATCTACTGGATTTGA+TGG | + | tig0030729:31134-31153 | Msa1444480:intron | 40.0% | |
| AGATAGGACTCATATGCAAG+TGG | + | tig0030729:31184-31203 | Msa1444480:intron | 40.0% | |
| ATAGGCAAAAGATGGAAGAC+GGG | - | tig0030729:31412-31431 | None:intergenic | 40.0% | |
| GAGTCTTGCTTACCAAAACA+TGG | + | tig0030729:31464-31483 | Msa1444480:intron | 40.0% | |
| !! | CATTGTTTCTAACTCCCAGT+TGG | + | tig0030729:31742-31761 | Msa1444480:intron | 40.0% |
| TATATGAAGTCACACACCAC+CGG | - | tig0030729:31787-31806 | None:intergenic | 40.0% | |
| ! | AGTTTGTGTACTGCCCTTTT+CGG | + | tig0030729:31831-31850 | Msa1444480:intron | 40.0% |
| !! | CATCTTGATTTGGAGTGTTG+AGG | + | tig0030729:31972-31991 | Msa1444480:intron | 40.0% |
| TTCCTTACATGGGAGATGTT+GGG | + | tig0030729:32092-32111 | Msa1444480:CDS | 40.0% | |
| TGGGTCGTATCTTTATACCA+AGG | + | tig0030729:32111-32130 | Msa1444480:CDS | 40.0% | |
| ! | CTCAGTAAGATAAAGTGCCT+TGG | - | tig0030729:32131-32150 | None:intergenic | 40.0% |
| ! | CAAGGCACTTTATCTTACTG+AGG | + | tig0030729:32129-32148 | Msa1444480:CDS | 40.0% |
| AACTTTCCTGGTAGACTTCA+GGG | - | tig0030729:32259-32278 | None:intergenic | 40.0% | |
| AAACTTTCCTGGTAGACTTC+AGG | - | tig0030729:32260-32279 | None:intergenic | 40.0% | |
| GTTAAGTGCCTTATGTTTGC+TGG | + | tig0030729:32405-32424 | Msa1444480:intron | 40.0% | |
| ACACAAAAGTGACAGCCAAA+GGG | - | tig0030729:32592-32611 | None:intergenic | 40.0% | |
| TACACAAAAGTGACAGCCAA+AGG | - | tig0030729:32593-32612 | None:intergenic | 40.0% | |
| ACATATAACCGTTGCGATGA+CGG | - | tig0030729:32787-32806 | None:intergenic | 40.0% | |
| ATTGTGTGACAGAGAAAGTG+TGG | - | tig0030729:32812-32831 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCTATACTTAGGC+TGG | + | tig0030729:32858-32877 | Msa1444480:intron | 40.0% |
| GGCTGGATCTCATTGTTTAA+TGG | + | tig0030729:32875-32894 | Msa1444480:intron | 40.0% | |
| ACCTAGCACTTCCTCATAAA+GGG | - | tig0030729:32923-32942 | None:intergenic | 40.0% | |
| AACCTAGCACTTCCTCATAA+AGG | - | tig0030729:32924-32943 | None:intergenic | 40.0% | |
| TCCAGTTGCACAGAGATTTA+GGG | - | tig0030729:33119-33138 | None:intergenic | 40.0% | |
| CTTGAATGCTGTCTCTTGAT+TGG | + | tig0030729:33219-33238 | Msa1444480:intron | 40.0% | |
| CAGAGACAAGCATGTTTCTT+TGG | + | tig0030729:33347-33366 | Msa1444480:intron | 40.0% | |
| ! | GTTGTATTTTCAGCTCTCCT+TGG | + | tig0030729:33390-33409 | Msa1444480:intron | 40.0% |
| ATTAACATGGAGATCGACCA+AGG | - | tig0030729:33410-33429 | None:intergenic | 40.0% | |
| TCACATACGTTCCAACTTGA+GGG | - | tig0030729:33614-33633 | None:intergenic | 40.0% | |
| !! | ATAAGGTGTCGAAGACTTGT+TGG | + | tig0030729:33805-33824 | Msa1444480:intron | 40.0% |
| TGAAACTCCACAATGAATCC+AGG | - | tig0030729:33896-33915 | None:intergenic | 40.0% | |
| GGATTCATTGTGGAGTTTCA+CGG | + | tig0030729:33896-33915 | Msa1444480:CDS | 40.0% | |
| !! | TAAACAGAAGTGCTACAGCA+GGG | - | tig0030729:33992-34011 | None:intergenic | 40.0% |
| !! | CGAAATTTTAAAGAAGCCCC+TGG | - | tig0030729:34017-34036 | None:intergenic | 40.0% |
| !! | GGGCTTCTTTAAAATTTCGG+AGG | + | tig0030729:34018-34037 | Msa1444480:intron | 40.0% |
| !!! | ACACTTGATTTTGGAGCACA+AGG | - | tig0030729:34172-34191 | None:intergenic | 40.0% |
| GACAATCACAAGGAGAATGA+AGG | - | tig0030729:34262-34281 | None:intergenic | 40.0% | |
| TCATTCTCCTTGTGATTGTC+TGG | + | tig0030729:34262-34281 | Msa1444480:intron | 40.0% | |
| TTTGTCCAGTTTCACCAATG+TGG | + | tig0030729:34372-34391 | Msa1444480:intron | 40.0% | |
| TTCTAGTGGCTTCAGAAATG+TGG | - | tig0030729:34452-34471 | None:intergenic | 40.0% | |
| ACCATCAGCATGAATTCTAG+TGG | - | tig0030729:34466-34485 | None:intergenic | 40.0% | |
| TCGAATTGAAGATGAAGCAG+CGG | - | tig0030729:34591-34610 | None:intergenic | 40.0% | |
| CTGCTTCATCTTCAATTCGA+AGG | + | tig0030729:34591-34610 | Msa1444480:CDS | 40.0% | |
| GCTTCATCTTCAATTCGAAG+GGG | + | tig0030729:34593-34612 | Msa1444480:CDS | 40.0% | |
| ! | TACTTTCTAGGAAGAGTAGC+AGG | - | tig0030729:34644-34663 | None:intergenic | 40.0% |
| CCTCTACGTGTATACTTTCT+AGG | - | tig0030729:34656-34675 | None:intergenic | 40.0% | |
| ! | CCTAGAAAGTATACACGTAG+AGG | + | tig0030729:34653-34672 | Msa1444480:CDS | 40.0% |
| AAAGTATACACGTAGAGGCT+TGG | + | tig0030729:34658-34677 | Msa1444480:CDS | 40.0% | |
| !! | GATAGAAGAGTATTTGTGCC+GGG | + | tig0030729:34701-34720 | Msa1444480:CDS | 40.0% |
| GAAGAAAAGGAGGAAAGGTA+AGG | + | tig0030729:34723-34742 | Msa1444480:intron | 40.0% | |
| AAAAGGAGGAAAGGTAAGGA+AGG | + | tig0030729:34727-34746 | Msa1444480:intron | 40.0% | |
| AAAGGAGGAAAGGTAAGGAA+GGG | + | tig0030729:34728-34747 | Msa1444480:intron | 40.0% | |
| ! | TCTAGGCAAGTAGGCAATTT+TGG | + | tig0030729:34753-34772 | Msa1444480:intron | 40.0% |
| !!! | CAAGTAGGCAATTTTGGCTA+GGG | + | tig0030729:34759-34778 | Msa1444480:intron | 40.0% |
| CTTATCTTCCACAGGGATTT+AGG | + | tig0030729:34832-34851 | Msa1444480:intron | 40.0% | |
| ! | TGAATTTCCATTGGTTGCAG+TGG | + | tig0030729:35286-35305 | Msa1444480:intron | 40.0% |
| GAGAGTTTGGAAGCAGTTTC+TGG | - | tig0030729:30098-30117 | None:intergenic | 45.0% | |
| !! | GCAGTTTTTGAGAGATGCGA+TGG | - | tig0030729:30420-30439 | None:intergenic | 45.0% |
| ACAGATGCCAACATACACCA+TGG | - | tig0030729:30745-30764 | None:intergenic | 45.0% | |
| ! | GGGTGTTTTGCAAGCACAAT+AGG | - | tig0030729:30820-30839 | None:intergenic | 45.0% |
| GATTGTGATCGCCAATCTCA+CGG | - | tig0030729:31078-31097 | None:intergenic | 45.0% | |
| ! | TGTTTCTAACTCCCAGTTGG+CGG | + | tig0030729:31745-31764 | Msa1444480:intron | 45.0% |
| AAACCTATAAGCAGCCAGTG+AGG | - | tig0030729:31883-31902 | None:intergenic | 45.0% | |
| ! | TCACTGGCTGCTTATAGGTT+TGG | + | tig0030729:31882-31901 | Msa1444480:intron | 45.0% |
| AGTTGAATAAGGGGCAGAAG+AGG | + | tig0030729:31922-31941 | Msa1444480:intron | 45.0% | |
| GTTCCTTACATGGGAGATGT+TGG | + | tig0030729:32091-32110 | Msa1444480:CDS | 45.0% | |
| ! | TGTTATGCCACTTGTGCATG+AGG | + | tig0030729:32330-32349 | Msa1444480:intron | 45.0% |
| TGAAGCAACATGAAGCTTCG+TGG | + | tig0030729:32683-32702 | Msa1444480:intron | 45.0% | |
| !! | ACCCTTTATGAGGAAGTGCT+AGG | + | tig0030729:32919-32938 | Msa1444480:intron | 45.0% |
| !! | GTGTTGACTGCTTGAATGAG+TGG | + | tig0030729:33041-33060 | Msa1444480:intron | 45.0% |
| TCCCTAAATCTCTGTGCAAC+TGG | + | tig0030729:33115-33134 | Msa1444480:intron | 45.0% | |
| CTCCAGTTGCACAGAGATTT+AGG | - | tig0030729:33120-33139 | None:intergenic | 45.0% | |
| !! | TGTGCAACTGGAGTTTGTTG+AGG | + | tig0030729:33127-33146 | Msa1444480:intron | 45.0% |
| !! | TCTTGATTGGAAAGTGCTCC+TGG | + | tig0030729:33232-33251 | Msa1444480:intron | 45.0% |
| CTCTTACACTACCCTCAAGT+TGG | + | tig0030729:33600-33619 | Msa1444480:intron | 45.0% | |
| CTCACATACGTTCCAACTTG+AGG | - | tig0030729:33615-33634 | None:intergenic | 45.0% | |
| AGATGTATCGGACATTCTCG+AGG | + | tig0030729:33690-33709 | Msa1444480:intron | 45.0% | |
| GATGTATCGGACATTCTCGA+GGG | + | tig0030729:33691-33710 | Msa1444480:intron | 45.0% | |
| ! | CAGGGAGGGGTTTTTACATA+AGG | - | tig0030729:33759-33778 | None:intergenic | 45.0% |
| TAAATGGCTCCTCCTGTACA+GGG | - | tig0030729:33777-33796 | None:intergenic | 45.0% | |
| GCAAAGAAGCAGGAGGAAAA+AGG | - | tig0030729:33926-33945 | None:intergenic | 45.0% | |
| !! | AAACAGAAGTGCTACAGCAG+GGG | - | tig0030729:33991-34010 | None:intergenic | 45.0% |
| !! | CTAAACAGAAGTGCTACAGC+AGG | - | tig0030729:33993-34012 | None:intergenic | 45.0% |
| CTGCTGTAGCACTTCTGTTT+AGG | + | tig0030729:33991-34010 | Msa1444480:intron | 45.0% | |
| TAGCACTTCTGTTTAGGCCA+GGG | + | tig0030729:33997-34016 | Msa1444480:intron | 45.0% | |
| TCTCCTTGTGATTGTCTGGT+AGG | + | tig0030729:34266-34285 | Msa1444480:intron | 45.0% | |
| CTCCTTGTGATTGTCTGGTA+GGG | + | tig0030729:34267-34286 | Msa1444480:intron | 45.0% | |
| TGATTGTCTGGTAGGGACTA+GGG | + | tig0030729:34274-34293 | Msa1444480:intron | 45.0% | |
| ! | TGGTAGGGACTAGGGTATTA+TGG | + | tig0030729:34282-34301 | Msa1444480:intron | 45.0% |
| ! | GGTAGGGACTAGGGTATTAT+GGG | + | tig0030729:34283-34302 | Msa1444480:intron | 45.0% |
| CTGTACCACATTGGTGAAAC+TGG | - | tig0030729:34380-34399 | None:intergenic | 45.0% | |
| GCCACTAGAATTCATGCTGA+TGG | + | tig0030729:34462-34481 | Msa1444480:intron | 45.0% | |
| GATAGAACCTTAGAGTGCAC+AGG | - | tig0030729:34560-34579 | None:intergenic | 45.0% | |
| ! | TTTCTAGGAAGAGTAGCAGG+TGG | - | tig0030729:34641-34660 | None:intergenic | 45.0% |
| GTATTTGTGCCGGGAAGAAA+AGG | + | tig0030729:34710-34729 | Msa1444480:CDS | 45.0% | |
| ! | ACCTTTCCTCCTTTTCTTCC+CGG | - | tig0030729:34722-34741 | None:intergenic | 45.0% |
| !! | AAAGGTAAGGAAGGGCATCT+AGG | + | tig0030729:34736-34755 | Msa1444480:intron | 45.0% |
| !!! | GCAAGTAGGCAATTTTGGCT+AGG | + | tig0030729:34758-34777 | Msa1444480:intron | 45.0% |
| TCCACAGGGATTTAGGCTAA+TGG | + | tig0030729:34839-34858 | Msa1444480:intron | 45.0% | |
| ! | ACCATTAGCCTAAATCCCTG+TGG | - | tig0030729:34843-34862 | None:intergenic | 45.0% |
| ! | TTTCCATTGGTTGCAGTGGA+AGG | + | tig0030729:35290-35309 | Msa1444480:intron | 45.0% |
| ! | TTCCATTGGTTGCAGTGGAA+GGG | + | tig0030729:35291-35310 | Msa1444480:intron | 45.0% |
| !!! | ATTTTTTATTTTTTTGATAT+TGG | - | tig0030729:34211-34230 | None:intergenic | 5.0% |
| !! | CAAAAAAATAAAAAATAAAT+TGG | + | tig0030729:34215-34234 | Msa1444480:intron | 5.0% |
| !!! | CAGGAACCCCATTTTGAAGC+AGG | - | tig0030729:30487-30506 | None:intergenic | 50.0% |
| ACACGACCATGGTCATCTAC+TGG | + | tig0030729:31125-31144 | Msa1444480:intron | 50.0% | |
| CAGAAGGATTACCGCCAACT+GGG | - | tig0030729:31759-31778 | None:intergenic | 50.0% | |
| TCAGAAGGATTACCGCCAAC+TGG | - | tig0030729:31760-31779 | None:intergenic | 50.0% | |
| AGTTGGCGGTAATCCTTCTG+AGG | + | tig0030729:31759-31778 | Msa1444480:intron | 50.0% | |
| ! | CGGTAATCCTTCTGAGGATC+CGG | + | tig0030729:31765-31784 | Msa1444480:intron | 50.0% |
| ! | TAATCCTTCTGAGGATCCGG+TGG | + | tig0030729:31768-31787 | Msa1444480:intron | 50.0% |
| TTGGTTAACACCAGCCTCAC+TGG | + | tig0030729:31866-31885 | Msa1444480:intron | 50.0% | |
| GACCCAACATCTCCCATGTA+AGG | - | tig0030729:32097-32116 | None:intergenic | 50.0% | |
| !! | ATAACCGTTGCGATGACGGA+TGG | - | tig0030729:32783-32802 | None:intergenic | 50.0% |
| GTAAAAACCCCTCCCTGTAC+AGG | + | tig0030729:33762-33781 | Msa1444480:intron | 50.0% | |
| GTAAATGGCTCCTCCTGTAC+AGG | - | tig0030729:33778-33797 | None:intergenic | 50.0% | |
| AAGAGCAGCAAAGAAGCAGG+AGG | - | tig0030729:33933-33952 | None:intergenic | 50.0% | |
| ACGAAGAGCAGCAAAGAAGC+AGG | - | tig0030729:33936-33955 | None:intergenic | 50.0% | |
| GGGAAAATACCAGCAGAGAG+CGG | - | tig0030729:33971-33990 | None:intergenic | 50.0% | |
| GTAGCACTTCTGTTTAGGCC+AGG | + | tig0030729:33996-34015 | Msa1444480:intron | 50.0% | |
| AGCACTTCTGTTTAGGCCAG+GGG | + | tig0030729:33998-34017 | Msa1444480:intron | 50.0% | |
| !! | TTTGGAGCACAAGGAGTACC+CGG | - | tig0030729:34163-34182 | None:intergenic | 50.0% |
| GTCCCTACCAGACAATCACA+AGG | - | tig0030729:34272-34291 | None:intergenic | 50.0% | |
| GTGATTGTCTGGTAGGGACT+AGG | + | tig0030729:34273-34292 | Msa1444480:intron | 50.0% | |
| !! | GCTTCTCTGAGACCCTCATT+TGG | - | tig0030729:34523-34542 | None:intergenic | 50.0% |
| AATGAGGGTCTCAGAGAAGC+TGG | + | tig0030729:34523-34542 | Msa1444480:CDS | 50.0% | |
| AACCTTAGAGTGCACAGGTG+TGG | - | tig0030729:34555-34574 | None:intergenic | 50.0% | |
| TTTGTGCCGGGAAGAAAAGG+AGG | + | tig0030729:34713-34732 | Msa1444480:CDS | 50.0% | |
| ! | TCCATTGGTTGCAGTGGAAG+GGG | + | tig0030729:35292-35311 | Msa1444480:intron | 50.0% |
| CTATAAGCAGCCAGTGAGGC+TGG | - | tig0030729:31879-31898 | None:intergenic | 55.0% | |
| ! | CAGCCTCACTGGCTGCTTAT+AGG | + | tig0030729:31877-31896 | Msa1444480:intron | 55.0% |
| GATGGTCCCTGAAGTCTACC+AGG | + | tig0030729:32250-32269 | Msa1444480:intron | 55.0% | |
| TGCTCAAAACCGCGTGTTGC+TGG | + | tig0030729:32654-32673 | Msa1444480:intron | 55.0% | |
| ! | GCTCAAAACCGCGTGTTGCT+GGG | + | tig0030729:32655-32674 | Msa1444480:intron | 55.0% |
| TCAGACATCCCAGCAACACG+CGG | - | tig0030729:32666-32685 | None:intergenic | 55.0% | |
| TCCACCATCCGTCATCGCAA+CGG | + | tig0030729:32776-32795 | Msa1444480:intron | 55.0% | |
| AAAACCCCTCCCTGTACAGG+AGG | + | tig0030729:33765-33784 | Msa1444480:intron | 55.0% | |
| TTGCTGCGACTCTTTCCGAG+CGG | + | tig0030729:33869-33888 | Msa1444480:CDS | 55.0% | |
| ACAATGAATCCAGGCCCGCT+CGG | - | tig0030729:33887-33906 | None:intergenic | 55.0% | |
| TGCAGCCTTTGTGTCGTCCT+CGG | + | tig0030729:34130-34149 | Msa1444480:CDS | 55.0% | |
| ACAAGCCGAGGACGACACAA+AGG | - | tig0030729:34138-34157 | None:intergenic | 55.0% | |
| ! | TGTCGTCCTCGGCTTGTTTC+CGG | + | tig0030729:34141-34160 | Msa1444480:CDS | 55.0% |
| GTCCACACCTGTGCACTCTA+AGG | + | tig0030729:34550-34569 | Msa1444480:CDS | 55.0% | |
| AGAGGCTTGGCGTCAATGAG+AGG | + | tig0030729:34671-34690 | Msa1444480:CDS | 55.0% | |
| GCCGGGAAGAAAAGGAGGAA+AGG | + | tig0030729:34718-34737 | Msa1444480:CDS | 55.0% | |
| !! | GGAAGGGCATCTAGGCAAGT+AGG | + | tig0030729:34744-34763 | Msa1444480:intron | 55.0% |
| AGCAATGTTGGGGGTTGCCA+TGG | - | tig0030729:35234-35253 | None:intergenic | 55.0% | |
| ACCCCTTCCACTGCAACCAA+TGG | - | tig0030729:35296-35315 | None:intergenic | 55.0% | |
| CACACCACCGGATCCTCAGA+AGG | - | tig0030729:31775-31794 | None:intergenic | 60.0% | |
| !! | GTTGCGATGACGGATGGTGG+AGG | - | tig0030729:32777-32796 | None:intergenic | 60.0% |
| !! | ACCGTTGCGATGACGGATGG+TGG | - | tig0030729:32780-32799 | None:intergenic | 60.0% |
| TGGCTCCTCCTGTACAGGGA+GGG | - | tig0030729:33773-33792 | None:intergenic | 60.0% | |
| ATGGCTCCTCCTGTACAGGG+AGG | - | tig0030729:33774-33793 | None:intergenic | 60.0% | |
| TGCTGCGACTCTTTCCGAGC+GGG | + | tig0030729:33870-33889 | Msa1444480:CDS | 60.0% | |
| GAGCGGGCCTGGATTCATTG+TGG | + | tig0030729:33886-33905 | Msa1444480:CDS | 60.0% | |
| GCTGCTCTTCGTCATGCTGC+TGG | + | tig0030729:33944-33963 | Msa1444480:CDS | 60.0% | |
| ! | GTCGTCCTCGGCTTGTTTCC+GGG | + | tig0030729:34142-34161 | Msa1444480:CDS | 60.0% |
| GAGTACCCGGAAACAAGCCG+AGG | - | tig0030729:34150-34169 | None:intergenic | 60.0% | |
| GGATCTCTGTTGAGACCCCC+AGG | + | tig0030729:35206-35225 | Msa1444480:intron | 60.0% | |
| GGGTCTCTGCGACACGACCA+TGG | + | tig0030729:31114-31133 | Msa1444480:intron | 65.0% | |
| GGCTCCTCCTGTACAGGGAG+GGG | - | tig0030729:33772-33791 | None:intergenic | 65.0% | |
| GTTGAGACCCCCAGGTGCCA+TGG | + | tig0030729:35214-35233 | Msa1444480:intron | 65.0% | |
| TGGGGGTTGCCATGGCACCT+GGG | - | tig0030729:35226-35245 | None:intergenic | 65.0% | |
| TTGGGGGTTGCCATGGCACC+TGG | - | tig0030729:35227-35246 | None:intergenic | 65.0% | |
| CGACTCTTTCCGAGCGGGCC+TGG | + | tig0030729:33875-33894 | Msa1444480:CDS | 70.0% | |
| GCTGCTGGTCCGCTCTCTGC+TGG | + | tig0030729:33959-33978 | Msa1444480:CDS | 70.0% | |
| GGGGTTGCCATGGCACCTGG+GGG | - | tig0030729:35224-35243 | None:intergenic | 70.0% | |
| GGGGGTTGCCATGGCACCTG+GGG | - | tig0030729:35225-35244 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030729 | gene | 29903 | 35371 | 29903 | ID=Msa1444480;Name=Msa1444480 |
| tig0030729 | mRNA | 29903 | 35371 | 29903 | ID=Msa1444480-mRNA-1;Parent=Msa1444480;Name=Msa1444480-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.28|1|1|7|0|564 |
| tig0030729 | exon | 29903 | 30589 | 29903 | ID=Msa1444480-mRNA-1:exon:14499;Parent=Msa1444480-mRNA-1 |
| tig0030729 | exon | 30694 | 31076 | 30694 | ID=Msa1444480-mRNA-1:exon:14500;Parent=Msa1444480-mRNA-1 |
| tig0030729 | exon | 32021 | 32159 | 32021 | ID=Msa1444480-mRNA-1:exon:14501;Parent=Msa1444480-mRNA-1 |
| tig0030729 | exon | 33860 | 33980 | 33860 | ID=Msa1444480-mRNA-1:exon:14502;Parent=Msa1444480-mRNA-1 |
| tig0030729 | exon | 34088 | 34163 | 34088 | ID=Msa1444480-mRNA-1:exon:14503;Parent=Msa1444480-mRNA-1 |
| tig0030729 | exon | 34517 | 34739 | 34517 | ID=Msa1444480-mRNA-1:exon:14504;Parent=Msa1444480-mRNA-1 |
| tig0030729 | exon | 35306 | 35371 | 35306 | ID=Msa1444480-mRNA-1:exon:14505;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 29903 | 30589 | 29903 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 30694 | 31076 | 30694 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 32021 | 32159 | 32021 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 33860 | 33980 | 33860 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 34088 | 34163 | 34088 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 34517 | 34739 | 34517 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| tig0030729 | CDS | 35306 | 35371 | 35306 | ID=Msa1444480-mRNA-1:cds;Parent=Msa1444480-mRNA-1 |
| Gene Sequence |
| Protein sequence |