Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448590 | sp|Q9T0F7|GXM2_ARATH | 41.014 | 217 | 117 | 5 | 89 | 300 | 74 | 284 | 1.20e-42 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448590 | A0A072URM4 | 94.000 | 300 | 16 | 1 | 1 | 300 | 1 | 298 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1430750 | Msa1448590 | 0.817950 | 2.527587e-52 | -8.615850e-47 |
| Msa1444190 | Msa1448590 | 0.880044 | 7.586735e-70 | -8.615850e-47 |
| Msa1343400 | Msa1448590 | 0.892849 | 1.085828e-74 | -8.615850e-47 |
| Msa0282220 | Msa1448590 | 0.801417 | 9.094843e-49 | -8.615850e-47 |
| Msa1222590 | Msa1448590 | 0.817734 | 2.828026e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448590 | MtrunA17_Chr4g0057371 | 94.000 | 300 | 16 | 1 | 1 | 300 | 1 | 298 | 0.0 | 582 |
| Msa1448590 | MtrunA17_Chr3g0122451 | 39.583 | 192 | 106 | 5 | 113 | 298 | 99 | 286 | 7.07e-41 | 143 |
| Msa1448590 | MtrunA17_Chr3g0077611 | 35.833 | 240 | 142 | 6 | 64 | 299 | 67 | 298 | 1.21e-40 | 143 |
| Msa1448590 | MtrunA17_Chr8g0377381 | 34.940 | 249 | 147 | 7 | 52 | 288 | 33 | 278 | 7.45e-40 | 141 |
| Msa1448590 | MtrunA17_Chr4g0053231 | 33.700 | 273 | 152 | 8 | 51 | 298 | 28 | 296 | 7.81e-39 | 138 |
| Msa1448590 | MtrunA17_Chr4g0044461 | 35.586 | 222 | 128 | 6 | 87 | 298 | 77 | 293 | 1.95e-37 | 135 |
| Msa1448590 | MtrunA17_Chr4g0044451 | 36.486 | 222 | 128 | 6 | 85 | 298 | 78 | 294 | 1.38e-35 | 130 |
| Msa1448590 | MtrunA17_Chr7g0225261 | 33.333 | 246 | 137 | 7 | 70 | 295 | 53 | 291 | 1.08e-32 | 122 |
| Msa1448590 | MtrunA17_Chr7g0225381 | 36.139 | 202 | 118 | 5 | 98 | 295 | 97 | 291 | 1.99e-32 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448590 | AT4G24910.1 | 42.812 | 313 | 158 | 6 | 1 | 298 | 1 | 307 | 3.87e-76 | 235 |
| Msa1448590 | AT1G71690.1 | 37.557 | 221 | 126 | 4 | 87 | 299 | 79 | 295 | 9.59e-45 | 154 |
| Msa1448590 | AT4G09990.1 | 41.014 | 217 | 117 | 5 | 89 | 300 | 74 | 284 | 1.22e-43 | 151 |
| Msa1448590 | AT1G33800.1 | 37.815 | 238 | 135 | 6 | 67 | 300 | 63 | 291 | 1.43e-42 | 148 |
| Msa1448590 | AT1G09610.1 | 37.387 | 222 | 124 | 5 | 87 | 299 | 67 | 282 | 2.31e-42 | 147 |
| Msa1448590 | AT2G15440.1 | 37.441 | 211 | 120 | 4 | 85 | 288 | 84 | 289 | 2.11e-38 | 138 |
| Msa1448590 | AT5G67210.1 | 34.965 | 286 | 137 | 10 | 51 | 298 | 29 | 303 | 2.59e-38 | 137 |
| Msa1448590 | AT3G50220.1 | 36.100 | 241 | 135 | 7 | 68 | 298 | 79 | 310 | 1.99e-37 | 135 |
| Msa1448590 | AT1G67330.1 | 33.047 | 233 | 141 | 4 | 69 | 295 | 60 | 283 | 3.74e-36 | 131 |
| Msa1448590 | AT1G27930.1 | 34.634 | 205 | 128 | 3 | 87 | 288 | 71 | 272 | 1.41e-34 | 127 |
Find 53 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGCAACCTTCTTATATT+TGG | 0.150659 | tig0032224:+17333 | Msa1448590:CDS |
| GTTGTTACCTTTCTTGTTGT+TGG | 0.253770 | tig0032224:-17435 | None:intergenic |
| GGACGAATATGAAGTATATC+AGG | 0.271304 | tig0032224:-17003 | None:intergenic |
| TTCTTCTCATATACTATTGC+AGG | 0.287959 | tig0032224:-17618 | None:intergenic |
| CAATAGTATATGAGAAGAAT+TGG | 0.309323 | tig0032224:+17622 | Msa1448590:CDS |
| TTTGAATTCTTTCTCTTTGA+AGG | 0.320540 | tig0032224:-17280 | None:intergenic |
| AGGTGTCTTGAATCTGGTTC+TGG | 0.346080 | tig0032224:-17558 | None:intergenic |
| AAGAATTCTAAAGATTGATA+TGG | 0.352843 | tig0032224:-17166 | None:intergenic |
| TAGAACACTAGCAGTGTAAA+TGG | 0.373143 | tig0032224:-17706 | None:intergenic |
| TGATATTTGTGAAATATAGA+AGG | 0.376168 | tig0032224:-17075 | None:intergenic |
| GTTTGAAGGTGTCTTGAATC+TGG | 0.376427 | tig0032224:-17564 | None:intergenic |
| TTCTTTCTCTTTGAAGGTGG+TGG | 0.398188 | tig0032224:-17274 | None:intergenic |
| TGTATTCTAAAGAGAAGTTA+TGG | 0.417535 | tig0032224:+17826 | Msa1448590:CDS |
| TCTGGTTCTGGTGCACATGC+TGG | 0.428572 | tig0032224:-17546 | None:intergenic |
| GACCGAGTCACCGGGTAGAA+TGG | 0.459909 | tig0032224:+17680 | Msa1448590:CDS |
| TGGGATGTCATAGTGGTTGA+TGG | 0.465525 | tig0032224:+17642 | Msa1448590:CDS |
| TTTGAAGGTGGTGGTGATGT+TGG | 0.474869 | tig0032224:-17265 | None:intergenic |
| GAAGGTGGTGGTGATGTTGG+AGG | 0.474884 | tig0032224:-17262 | None:intergenic |
| GTGGTTATCGTCGAGAAAGA+TGG | 0.500029 | tig0032224:-17406 | None:intergenic |
| AATAGTATATGAGAAGAATT+GGG | 0.500479 | tig0032224:+17623 | Msa1448590:CDS |
| GAATTCTTTCTCTTTGAAGG+TGG | 0.501964 | tig0032224:-17277 | None:intergenic |
| TAGATCGAATGGTAGAGAAA+TGG | 0.504798 | tig0032224:+17769 | Msa1448590:CDS |
| ATCTCATCAATGAATGAAGC+AGG | 0.514333 | tig0032224:+17378 | Msa1448590:CDS |
| TGCCATTCTACCCGGTGACT+CGG | 0.528875 | tig0032224:-17682 | None:intergenic |
| CGACAGACCAACAACAAGAA+AGG | 0.531476 | tig0032224:+17428 | Msa1448590:CDS |
| TTACACAGGGCAGAAGGTAG+TGG | 0.534034 | tig0032224:-17877 | None:intergenic |
| GTTGAAAACCAAATATAAGA+AGG | 0.546843 | tig0032224:-17341 | None:intergenic |
| TTCTTGTTGTTGGTCTGTCG+TGG | 0.555462 | tig0032224:-17425 | None:intergenic |
| ACTCTTATATGTACTTACAC+AGG | 0.565037 | tig0032224:-17891 | None:intergenic |
| GACGAATATGAAGTATATCA+GGG | 0.565386 | tig0032224:-17002 | None:intergenic |
| CTCTTATATGTACTTACACA+GGG | 0.575836 | tig0032224:-17890 | None:intergenic |
| GTTCTAGCTAGAGGTGGGAA+TGG | 0.584379 | tig0032224:+17723 | Msa1448590:CDS |
| ACGAATATGAAGTATATCAG+GGG | 0.587185 | tig0032224:-17001 | None:intergenic |
| CCAAATATAAGAAGGTTGCA+TGG | 0.588035 | tig0032224:-17333 | None:intergenic |
| TTTACTTGAGTTGTGTGTGG+AGG | 0.592543 | tig0032224:-17042 | None:intergenic |
| TAAATGGATGCCATTCTACC+CGG | 0.598005 | tig0032224:-17690 | None:intergenic |
| GCTAGTGTTCTAGCTAGAGG+TGG | 0.600870 | tig0032224:+17717 | Msa1448590:CDS |
| GACTCGGTCGAATCGCCAGT+CGG | 0.604950 | tig0032224:-17666 | None:intergenic |
| ATGTACTTACACAGGGCAGA+AGG | 0.609585 | tig0032224:-17883 | None:intergenic |
| TAAAGATTGATATGGTTGAG+AGG | 0.613361 | tig0032224:-17158 | None:intergenic |
| TGTACATGATGTAGATCGAA+TGG | 0.614483 | tig0032224:+17758 | Msa1448590:CDS |
| GATGAGATGATAATGAATTG+TGG | 0.616879 | tig0032224:-17363 | None:intergenic |
| GAAGAATTGGGATGTCATAG+TGG | 0.623144 | tig0032224:+17635 | Msa1448590:CDS |
| CTAGTGTTCTAGCTAGAGGT+GGG | 0.628712 | tig0032224:+17718 | Msa1448590:CDS |
| GAGAGGAACAAAACAAGGAG+AGG | 0.631401 | tig0032224:-17141 | None:intergenic |
| GGAGGTGAAAATTGAACAAG+AGG | 0.631643 | tig0032224:-17024 | None:intergenic |
| GGCGATTCGACCGAGTCACC+GGG | 0.635705 | tig0032224:+17672 | Msa1448590:CDS |
| ACTGCTAGTGTTCTAGCTAG+AGG | 0.636374 | tig0032224:+17714 | Msa1448590:CDS |
| AGAGGAACAAAACAAGGAGA+GGG | 0.645642 | tig0032224:-17140 | None:intergenic |
| ATAGTGGTTGATGGACCGAC+TGG | 0.650519 | tig0032224:+17651 | Msa1448590:CDS |
| TGGTTGAGAGGAACAAAACA+AGG | 0.653235 | tig0032224:-17146 | None:intergenic |
| CGAATATGAAGTATATCAGG+GGG | 0.672418 | tig0032224:-17000 | None:intergenic |
| TATCGTCGAGAAAGATGGTG+TGG | 0.672923 | tig0032224:-17401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATTTGTGAAATATAGA+AGG | - | tig0032224:17078-17097 | None:intergenic | 20.0% |
| !! | AAATATCAAAAAGTAACAAG+AGG | + | tig0032224:17090-17109 | Msa1448590:CDS | 20.0% |
| !! | AATATCAAAAAGTAACAAGA+GGG | + | tig0032224:17091-17110 | Msa1448590:CDS | 20.0% |
| !!! | AAGAATTCTAAAGATTGATA+TGG | - | tig0032224:17169-17188 | None:intergenic | 20.0% |
| !! | AATAGTATATGAGAAGAATT+GGG | + | tig0032224:17623-17642 | Msa1448590:CDS | 20.0% |
| !! | TGATATTTGTGAAATATAGA+AGG | - | tig0032224:17078-17097 | None:intergenic | 20.0% |
| !! | AAATATCAAAAAGTAACAAG+AGG | + | tig0032224:17090-17109 | Msa1448590:CDS | 20.0% |
| !! | AATATCAAAAAGTAACAAGA+GGG | + | tig0032224:17091-17110 | Msa1448590:CDS | 20.0% |
| !!! | AAGAATTCTAAAGATTGATA+TGG | - | tig0032224:17169-17188 | None:intergenic | 20.0% |
| !! | AATAGTATATGAGAAGAATT+GGG | + | tig0032224:17623-17642 | Msa1448590:CDS | 20.0% |
| !!! | ATTTTGTTGTTTGTGGAAAA+TGG | - | tig0032224:17219-17238 | None:intergenic | 25.0% |
| !!! | TGCAATAATTTTGTTGTTTG+TGG | - | tig0032224:17226-17245 | None:intergenic | 25.0% |
| ! | TTTGAATTCTTTCTCTTTGA+AGG | - | tig0032224:17283-17302 | None:intergenic | 25.0% |
| ! | GTTGAAAACCAAATATAAGA+AGG | - | tig0032224:17344-17363 | None:intergenic | 25.0% |
| !! | AGTTTATAAGCTTCTTTTGT+TGG | - | tig0032224:17504-17523 | None:intergenic | 25.0% |
| !!! | GTTTACATTTTGATGTTTGA+AGG | - | tig0032224:17581-17600 | None:intergenic | 25.0% |
| ! | CAATAGTATATGAGAAGAAT+TGG | + | tig0032224:17622-17641 | Msa1448590:CDS | 25.0% |
| !! | TGTATTCTAAAGAGAAGTTA+TGG | + | tig0032224:17826-17845 | Msa1448590:CDS | 25.0% |
| !!! | TTATGGCATTTTAGAATTAG+AGG | + | tig0032224:17843-17862 | Msa1448590:CDS | 25.0% |
| !!! | ATTTTGTTGTTTGTGGAAAA+TGG | - | tig0032224:17219-17238 | None:intergenic | 25.0% |
| !!! | TGCAATAATTTTGTTGTTTG+TGG | - | tig0032224:17226-17245 | None:intergenic | 25.0% |
| ! | TTTGAATTCTTTCTCTTTGA+AGG | - | tig0032224:17283-17302 | None:intergenic | 25.0% |
| ! | GTTGAAAACCAAATATAAGA+AGG | - | tig0032224:17344-17363 | None:intergenic | 25.0% |
| !! | AGTTTATAAGCTTCTTTTGT+TGG | - | tig0032224:17504-17523 | None:intergenic | 25.0% |
| !!! | GTTTACATTTTGATGTTTGA+AGG | - | tig0032224:17581-17600 | None:intergenic | 25.0% |
| ! | CAATAGTATATGAGAAGAAT+TGG | + | tig0032224:17622-17641 | Msa1448590:CDS | 25.0% |
| !! | TGTATTCTAAAGAGAAGTTA+TGG | + | tig0032224:17826-17845 | Msa1448590:CDS | 25.0% |
| !!! | TTATGGCATTTTAGAATTAG+AGG | + | tig0032224:17843-17862 | Msa1448590:CDS | 25.0% |
| ACGAATATGAAGTATATCAG+GGG | - | tig0032224:17004-17023 | None:intergenic | 30.0% | |
| GACGAATATGAAGTATATCA+GGG | - | tig0032224:17005-17024 | None:intergenic | 30.0% | |
| TAAAGATTGATATGGTTGAG+AGG | - | tig0032224:17161-17180 | None:intergenic | 30.0% | |
| ! | GATGAGATGATAATGAATTG+TGG | - | tig0032224:17366-17385 | None:intergenic | 30.0% |
| TTCTTCTCATATACTATTGC+AGG | - | tig0032224:17621-17640 | None:intergenic | 30.0% | |
| ACGAATATGAAGTATATCAG+GGG | - | tig0032224:17004-17023 | None:intergenic | 30.0% | |
| GACGAATATGAAGTATATCA+GGG | - | tig0032224:17005-17024 | None:intergenic | 30.0% | |
| TAAAGATTGATATGGTTGAG+AGG | - | tig0032224:17161-17180 | None:intergenic | 30.0% | |
| ! | GATGAGATGATAATGAATTG+TGG | - | tig0032224:17366-17385 | None:intergenic | 30.0% |
| TTCTTCTCATATACTATTGC+AGG | - | tig0032224:17621-17640 | None:intergenic | 30.0% | |
| CGAATATGAAGTATATCAGG+GGG | - | tig0032224:17003-17022 | None:intergenic | 35.0% | |
| GGACGAATATGAAGTATATC+AGG | - | tig0032224:17006-17025 | None:intergenic | 35.0% | |
| !! | TCTTTTACTTGAGTTGTGTG+TGG | - | tig0032224:17048-17067 | None:intergenic | 35.0% |
| ! | GAATTCTTTCTCTTTGAAGG+TGG | - | tig0032224:17280-17299 | None:intergenic | 35.0% |
| CCAAATATAAGAAGGTTGCA+TGG | - | tig0032224:17336-17355 | None:intergenic | 35.0% | |
| CCATGCAACCTTCTTATATT+TGG | + | tig0032224:17333-17352 | Msa1448590:CDS | 35.0% | |
| ATCTCATCAATGAATGAAGC+AGG | + | tig0032224:17378-17397 | Msa1448590:CDS | 35.0% | |
| ! | GTTGTTACCTTTCTTGTTGT+TGG | - | tig0032224:17438-17457 | None:intergenic | 35.0% |
| TAGAACACTAGCAGTGTAAA+TGG | - | tig0032224:17709-17728 | None:intergenic | 35.0% | |
| TGTACATGATGTAGATCGAA+TGG | + | tig0032224:17758-17777 | Msa1448590:CDS | 35.0% | |
| TAGATCGAATGGTAGAGAAA+TGG | + | tig0032224:17769-17788 | Msa1448590:CDS | 35.0% | |
| ! | TGGTAGAGAAATGGTTTTCT+TGG | + | tig0032224:17778-17797 | Msa1448590:CDS | 35.0% |
| ! | GGTAGAGAAATGGTTTTCTT+GGG | + | tig0032224:17779-17798 | Msa1448590:CDS | 35.0% |
| CGAATATGAAGTATATCAGG+GGG | - | tig0032224:17003-17022 | None:intergenic | 35.0% | |
| GGACGAATATGAAGTATATC+AGG | - | tig0032224:17006-17025 | None:intergenic | 35.0% | |
| !! | TCTTTTACTTGAGTTGTGTG+TGG | - | tig0032224:17048-17067 | None:intergenic | 35.0% |
| ! | GAATTCTTTCTCTTTGAAGG+TGG | - | tig0032224:17280-17299 | None:intergenic | 35.0% |
| CCAAATATAAGAAGGTTGCA+TGG | - | tig0032224:17336-17355 | None:intergenic | 35.0% | |
| CCATGCAACCTTCTTATATT+TGG | + | tig0032224:17333-17352 | Msa1448590:CDS | 35.0% | |
| ATCTCATCAATGAATGAAGC+AGG | + | tig0032224:17378-17397 | Msa1448590:CDS | 35.0% | |
| ! | GTTGTTACCTTTCTTGTTGT+TGG | - | tig0032224:17438-17457 | None:intergenic | 35.0% |
| TAGAACACTAGCAGTGTAAA+TGG | - | tig0032224:17709-17728 | None:intergenic | 35.0% | |
| TGTACATGATGTAGATCGAA+TGG | + | tig0032224:17758-17777 | Msa1448590:CDS | 35.0% | |
| TAGATCGAATGGTAGAGAAA+TGG | + | tig0032224:17769-17788 | Msa1448590:CDS | 35.0% | |
| ! | TGGTAGAGAAATGGTTTTCT+TGG | + | tig0032224:17778-17797 | Msa1448590:CDS | 35.0% |
| ! | GGTAGAGAAATGGTTTTCTT+GGG | + | tig0032224:17779-17798 | Msa1448590:CDS | 35.0% |
| GGAGGTGAAAATTGAACAAG+AGG | - | tig0032224:17027-17046 | None:intergenic | 40.0% | |
| ! | TTTACTTGAGTTGTGTGTGG+AGG | - | tig0032224:17045-17064 | None:intergenic | 40.0% |
| AGAGGAACAAAACAAGGAGA+GGG | - | tig0032224:17143-17162 | None:intergenic | 40.0% | |
| TGGTTGAGAGGAACAAAACA+AGG | - | tig0032224:17149-17168 | None:intergenic | 40.0% | |
| ! | TTCTTTCTCTTTGAAGGTGG+TGG | - | tig0032224:17277-17296 | None:intergenic | 40.0% |
| !! | GTTTGAAGGTGTCTTGAATC+TGG | - | tig0032224:17567-17586 | None:intergenic | 40.0% |
| GAAGAATTGGGATGTCATAG+TGG | + | tig0032224:17635-17654 | Msa1448590:CDS | 40.0% | |
| TAAATGGATGCCATTCTACC+CGG | - | tig0032224:17693-17712 | None:intergenic | 40.0% | |
| GGAGGTGAAAATTGAACAAG+AGG | - | tig0032224:17027-17046 | None:intergenic | 40.0% | |
| ! | TTTACTTGAGTTGTGTGTGG+AGG | - | tig0032224:17045-17064 | None:intergenic | 40.0% |
| AGAGGAACAAAACAAGGAGA+GGG | - | tig0032224:17143-17162 | None:intergenic | 40.0% | |
| TGGTTGAGAGGAACAAAACA+AGG | - | tig0032224:17149-17168 | None:intergenic | 40.0% | |
| ! | TTCTTTCTCTTTGAAGGTGG+TGG | - | tig0032224:17277-17296 | None:intergenic | 40.0% |
| !! | GTTTGAAGGTGTCTTGAATC+TGG | - | tig0032224:17567-17586 | None:intergenic | 40.0% |
| GAAGAATTGGGATGTCATAG+TGG | + | tig0032224:17635-17654 | Msa1448590:CDS | 40.0% | |
| TAAATGGATGCCATTCTACC+CGG | - | tig0032224:17693-17712 | None:intergenic | 40.0% | |
| GAGAGGAACAAAACAAGGAG+AGG | - | tig0032224:17144-17163 | None:intergenic | 45.0% | |
| ! | TTTGAAGGTGGTGGTGATGT+TGG | - | tig0032224:17268-17287 | None:intergenic | 45.0% |
| TATCGTCGAGAAAGATGGTG+TGG | - | tig0032224:17404-17423 | None:intergenic | 45.0% | |
| GTGGTTATCGTCGAGAAAGA+TGG | - | tig0032224:17409-17428 | None:intergenic | 45.0% | |
| !! | TTCTTGTTGTTGGTCTGTCG+TGG | - | tig0032224:17428-17447 | None:intergenic | 45.0% |
| CGACAGACCAACAACAAGAA+AGG | + | tig0032224:17428-17447 | Msa1448590:CDS | 45.0% | |
| ! | AGGTGTCTTGAATCTGGTTC+TGG | - | tig0032224:17561-17580 | None:intergenic | 45.0% |
| TGGGATGTCATAGTGGTTGA+TGG | + | tig0032224:17642-17661 | Msa1448590:CDS | 45.0% | |
| ! | ACTGCTAGTGTTCTAGCTAG+AGG | + | tig0032224:17714-17733 | Msa1448590:CDS | 45.0% |
| ! | CTAGTGTTCTAGCTAGAGGT+GGG | + | tig0032224:17718-17737 | Msa1448590:CDS | 45.0% |
| GAGAGGAACAAAACAAGGAG+AGG | - | tig0032224:17144-17163 | None:intergenic | 45.0% | |
| ! | TTTGAAGGTGGTGGTGATGT+TGG | - | tig0032224:17268-17287 | None:intergenic | 45.0% |
| TATCGTCGAGAAAGATGGTG+TGG | - | tig0032224:17404-17423 | None:intergenic | 45.0% | |
| GTGGTTATCGTCGAGAAAGA+TGG | - | tig0032224:17409-17428 | None:intergenic | 45.0% | |
| !! | TTCTTGTTGTTGGTCTGTCG+TGG | - | tig0032224:17428-17447 | None:intergenic | 45.0% |
| CGACAGACCAACAACAAGAA+AGG | + | tig0032224:17428-17447 | Msa1448590:CDS | 45.0% | |
| ! | AGGTGTCTTGAATCTGGTTC+TGG | - | tig0032224:17561-17580 | None:intergenic | 45.0% |
| TGGGATGTCATAGTGGTTGA+TGG | + | tig0032224:17642-17661 | Msa1448590:CDS | 45.0% | |
| ! | ACTGCTAGTGTTCTAGCTAG+AGG | + | tig0032224:17714-17733 | Msa1448590:CDS | 45.0% |
| ! | CTAGTGTTCTAGCTAGAGGT+GGG | + | tig0032224:17718-17737 | Msa1448590:CDS | 45.0% |
| !! | ATAGTGGTTGATGGACCGAC+TGG | + | tig0032224:17651-17670 | Msa1448590:CDS | 50.0% |
| ! | GCTAGTGTTCTAGCTAGAGG+TGG | + | tig0032224:17717-17736 | Msa1448590:CDS | 50.0% |
| ! | GTTCTAGCTAGAGGTGGGAA+TGG | + | tig0032224:17723-17742 | Msa1448590:CDS | 50.0% |
| TTACACAGGGCAGAAGGTAG+TGG | - | tig0032224:17880-17899 | None:intergenic | 50.0% | |
| !! | ATAGTGGTTGATGGACCGAC+TGG | + | tig0032224:17651-17670 | Msa1448590:CDS | 50.0% |
| ! | GCTAGTGTTCTAGCTAGAGG+TGG | + | tig0032224:17717-17736 | Msa1448590:CDS | 50.0% |
| ! | GTTCTAGCTAGAGGTGGGAA+TGG | + | tig0032224:17723-17742 | Msa1448590:CDS | 50.0% |
| TTACACAGGGCAGAAGGTAG+TGG | - | tig0032224:17880-17899 | None:intergenic | 50.0% | |
| ! | GAAGGTGGTGGTGATGTTGG+AGG | - | tig0032224:17265-17284 | None:intergenic | 55.0% |
| !! | TCTGGTTCTGGTGCACATGC+TGG | - | tig0032224:17549-17568 | None:intergenic | 55.0% |
| TGCCATTCTACCCGGTGACT+CGG | - | tig0032224:17685-17704 | None:intergenic | 55.0% | |
| ! | GAAGGTGGTGGTGATGTTGG+AGG | - | tig0032224:17265-17284 | None:intergenic | 55.0% |
| !! | TCTGGTTCTGGTGCACATGC+TGG | - | tig0032224:17549-17568 | None:intergenic | 55.0% |
| TGCCATTCTACCCGGTGACT+CGG | - | tig0032224:17685-17704 | None:intergenic | 55.0% | |
| ! | GACTCGGTCGAATCGCCAGT+CGG | - | tig0032224:17669-17688 | None:intergenic | 60.0% |
| TGGCGATTCGACCGAGTCAC+CGG | + | tig0032224:17671-17690 | Msa1448590:CDS | 60.0% | |
| GACCGAGTCACCGGGTAGAA+TGG | + | tig0032224:17680-17699 | Msa1448590:CDS | 60.0% | |
| ! | GACTCGGTCGAATCGCCAGT+CGG | - | tig0032224:17669-17688 | None:intergenic | 60.0% |
| TGGCGATTCGACCGAGTCAC+CGG | + | tig0032224:17671-17690 | Msa1448590:CDS | 60.0% | |
| GACCGAGTCACCGGGTAGAA+TGG | + | tig0032224:17680-17699 | Msa1448590:CDS | 60.0% | |
| GGCGATTCGACCGAGTCACC+GGG | + | tig0032224:17672-17691 | Msa1448590:CDS | 65.0% | |
| GGCGATTCGACCGAGTCACC+GGG | + | tig0032224:17672-17691 | Msa1448590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032224 | gene | 16997 | 17899 | 16997 | ID=Msa1448590;Name=Msa1448590 |
| tig0032224 | mRNA | 16997 | 17899 | 16997 | ID=Msa1448590-mRNA-1;Parent=Msa1448590;Name=Msa1448590-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|300 |
| tig0032224 | exon | 16997 | 17899 | 16997 | ID=Msa1448590-mRNA-1:exon:16471;Parent=Msa1448590-mRNA-1 |
| tig0032224 | CDS | 16997 | 17899 | 16997 | ID=Msa1448590-mRNA-1:cds;Parent=Msa1448590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
