Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444190 | sp|Q9T0F7|GXM2_ARATH | 38.819 | 237 | 131 | 6 | 69 | 300 | 57 | 284 | 8.29e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444190 | A0A072URM4 | 93.667 | 300 | 17 | 1 | 1 | 300 | 1 | 298 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1430750 | Msa1444190 | 0.803454 | 3.458759e-49 | -8.615850e-47 |
| Msa1436420 | Msa1444190 | 0.818247 | 2.165970e-52 | -8.615850e-47 |
| Msa1444190 | Msa1448590 | 0.880044 | 7.586735e-70 | -8.615850e-47 |
| Msa0199960 | Msa1444190 | 0.813770 | 2.163202e-51 | -8.615850e-47 |
| Msa1340700 | Msa1444190 | 0.800661 | 1.298132e-48 | -8.615850e-47 |
| Msa1343400 | Msa1444190 | 0.966296 | 9.878777e-126 | -8.615850e-47 |
| Msa0242490 | Msa1444190 | 0.804229 | 2.388171e-49 | -8.615850e-47 |
| Msa0243600 | Msa1444190 | 0.831675 | 1.459688e-55 | -8.615850e-47 |
| Msa0282220 | Msa1444190 | 0.827655 | 1.387420e-54 | -8.615850e-47 |
| Msa1222590 | Msa1444190 | 0.803752 | 3.000953e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444190 | MtrunA17_Chr4g0057371 | 93.667 | 300 | 17 | 1 | 1 | 300 | 1 | 298 | 0.0 | 580 |
| Msa1444190 | MtrunA17_Chr3g0122451 | 39.583 | 192 | 106 | 5 | 113 | 298 | 99 | 286 | 8.02e-41 | 143 |
| Msa1444190 | MtrunA17_Chr3g0077611 | 35.833 | 240 | 142 | 6 | 64 | 299 | 67 | 298 | 1.01e-40 | 143 |
| Msa1444190 | MtrunA17_Chr8g0377381 | 34.940 | 249 | 147 | 7 | 52 | 288 | 33 | 278 | 5.36e-40 | 141 |
| Msa1444190 | MtrunA17_Chr4g0053231 | 33.700 | 273 | 152 | 8 | 51 | 298 | 28 | 296 | 8.50e-39 | 138 |
| Msa1444190 | MtrunA17_Chr4g0044461 | 35.586 | 222 | 128 | 6 | 87 | 298 | 77 | 293 | 1.72e-37 | 135 |
| Msa1444190 | MtrunA17_Chr4g0044451 | 36.486 | 222 | 128 | 6 | 85 | 298 | 78 | 294 | 1.35e-35 | 130 |
| Msa1444190 | MtrunA17_Chr7g0225261 | 33.333 | 246 | 137 | 7 | 70 | 295 | 53 | 291 | 1.47e-32 | 122 |
| Msa1444190 | MtrunA17_Chr7g0225381 | 36.139 | 202 | 118 | 5 | 98 | 295 | 97 | 291 | 2.33e-32 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444190 | AT4G24910.1 | 42.812 | 313 | 158 | 6 | 1 | 298 | 1 | 307 | 1.87e-76 | 236 |
| Msa1444190 | AT1G71690.1 | 37.557 | 221 | 126 | 4 | 87 | 299 | 79 | 295 | 1.07e-44 | 154 |
| Msa1444190 | AT4G09990.1 | 38.819 | 237 | 131 | 6 | 69 | 300 | 57 | 284 | 8.43e-44 | 151 |
| Msa1444190 | AT1G33800.1 | 37.815 | 238 | 135 | 6 | 67 | 300 | 63 | 291 | 9.28e-43 | 149 |
| Msa1444190 | AT1G09610.1 | 37.387 | 222 | 124 | 5 | 87 | 299 | 67 | 282 | 2.56e-42 | 147 |
| Msa1444190 | AT2G15440.1 | 37.441 | 211 | 120 | 4 | 85 | 288 | 84 | 289 | 2.22e-38 | 138 |
| Msa1444190 | AT5G67210.1 | 34.965 | 286 | 137 | 10 | 51 | 298 | 29 | 303 | 2.91e-38 | 137 |
| Msa1444190 | AT3G50220.1 | 36.100 | 241 | 135 | 7 | 68 | 298 | 79 | 310 | 1.83e-37 | 135 |
| Msa1444190 | AT1G67330.1 | 33.047 | 233 | 141 | 4 | 69 | 295 | 60 | 283 | 6.21e-36 | 130 |
| Msa1444190 | AT1G27930.1 | 34.634 | 205 | 128 | 3 | 87 | 288 | 71 | 272 | 1.47e-34 | 127 |
Find 53 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGCAACCTTCTTATATT+TGG | 0.150659 | tig0030662:-44984 | Msa1444190:CDS |
| GTTGTTACCTTTCTTGTTGT+TGG | 0.253770 | tig0030662:+44882 | None:intergenic |
| GGACGAATATGAAGTATATC+AGG | 0.271304 | tig0030662:+45314 | None:intergenic |
| TTCTTCTCATATACTATTGC+AGG | 0.287959 | tig0030662:+44699 | None:intergenic |
| CAATAGTATATGAGAAGAAT+TGG | 0.309323 | tig0030662:-44695 | Msa1444190:CDS |
| TTTGAATTCTTTCTCTTTGA+AGG | 0.320540 | tig0030662:+45037 | None:intergenic |
| AGGTGTCTTGAATCTGGTTC+TGG | 0.346080 | tig0030662:+44759 | None:intergenic |
| AAGAATTCTAAAGATTGATA+TGG | 0.352843 | tig0030662:+45151 | None:intergenic |
| TAGAACACTAGCAGTGTAAA+TGG | 0.373143 | tig0030662:+44611 | None:intergenic |
| TGATATTTGTGAAATATAGA+AGG | 0.376168 | tig0030662:+45242 | None:intergenic |
| GTTTGAAGGTGTCTTGAATC+TGG | 0.376427 | tig0030662:+44753 | None:intergenic |
| TTCTTTCTCTTTGAAGGTGG+TGG | 0.398188 | tig0030662:+45043 | None:intergenic |
| TGTATTCTAAAGAGAAGTTA+TGG | 0.417535 | tig0030662:-44491 | Msa1444190:CDS |
| TCTGGTTCTGGTGCACATGC+TGG | 0.428572 | tig0030662:+44771 | None:intergenic |
| GACCGAGTCACCGGGTAGAA+TGG | 0.459909 | tig0030662:-44637 | Msa1444190:CDS |
| TGGGATGTCATAGTGGTTGA+TGG | 0.465525 | tig0030662:-44675 | Msa1444190:CDS |
| TTTGAAGGTGGTGGTGATGT+TGG | 0.474869 | tig0030662:+45052 | None:intergenic |
| GAAGGTGGTGGTGATGTTGG+AGG | 0.474884 | tig0030662:+45055 | None:intergenic |
| GTGGTTATCGTCGAGAAAGA+TGG | 0.500029 | tig0030662:+44911 | None:intergenic |
| AATAGTATATGAGAAGAATT+GGG | 0.500479 | tig0030662:-44694 | Msa1444190:CDS |
| GAATTCTTTCTCTTTGAAGG+TGG | 0.501964 | tig0030662:+45040 | None:intergenic |
| TAGATCGAATGGTAGAGAAA+TGG | 0.504798 | tig0030662:-44548 | Msa1444190:CDS |
| ATCTCATCAATGAATGAAGC+AGG | 0.514333 | tig0030662:-44939 | Msa1444190:CDS |
| TGCCATTCTACCCGGTGACT+CGG | 0.528875 | tig0030662:+44635 | None:intergenic |
| CGACAGACCAACAACAAGAA+AGG | 0.531476 | tig0030662:-44889 | Msa1444190:CDS |
| TTACACAGGGCAGAAGGTAG+TGG | 0.534034 | tig0030662:+44440 | None:intergenic |
| GTTGAAAACCAAATATAAGA+AGG | 0.546843 | tig0030662:+44976 | None:intergenic |
| TTCTTGTTGTTGGTCTGTCG+TGG | 0.555462 | tig0030662:+44892 | None:intergenic |
| ACTCTTATATGTACTTACAC+AGG | 0.565037 | tig0030662:+44426 | None:intergenic |
| GACGAATATGAAGTATATCA+GGG | 0.565386 | tig0030662:+45315 | None:intergenic |
| CTCTTATATGTACTTACACA+GGG | 0.575836 | tig0030662:+44427 | None:intergenic |
| GTTCTAGCTAGAGGTGGGAA+TGG | 0.584379 | tig0030662:-44594 | Msa1444190:CDS |
| ACGAATATGAAGTATATCAG+GGG | 0.587185 | tig0030662:+45316 | None:intergenic |
| CCAAATATAAGAAGGTTGCA+TGG | 0.588035 | tig0030662:+44984 | None:intergenic |
| TTTACTTGAGTTGTGTGTGG+AGG | 0.592543 | tig0030662:+45275 | None:intergenic |
| TAAATGGATGCCATTCTACC+CGG | 0.598005 | tig0030662:+44627 | None:intergenic |
| GCTAGTGTTCTAGCTAGAGG+TGG | 0.600870 | tig0030662:-44600 | Msa1444190:CDS |
| GACTCGGTCGAATCGCCAGT+CGG | 0.604950 | tig0030662:+44651 | None:intergenic |
| ATGTACTTACACAGGGCAGA+AGG | 0.609585 | tig0030662:+44434 | None:intergenic |
| TAAAGATTGATATGGTTGAG+AGG | 0.613361 | tig0030662:+45159 | None:intergenic |
| TGTACATGATGTAGATCGAA+TGG | 0.614483 | tig0030662:-44559 | Msa1444190:CDS |
| GATGAGATGATAATGAATTG+TGG | 0.616879 | tig0030662:+44954 | None:intergenic |
| GAAGAATTGGGATGTCATAG+TGG | 0.623144 | tig0030662:-44682 | Msa1444190:CDS |
| CTAGTGTTCTAGCTAGAGGT+GGG | 0.628712 | tig0030662:-44599 | Msa1444190:CDS |
| GAGAGGAACAAAACAAGGAG+AGG | 0.631401 | tig0030662:+45176 | None:intergenic |
| GGAGGTGAAAATTGAACAAG+AGG | 0.631643 | tig0030662:+45293 | None:intergenic |
| GGCGATTCGACCGAGTCACC+GGG | 0.635705 | tig0030662:-44645 | Msa1444190:CDS |
| ACTGCTAGTGTTCTAGCTAG+AGG | 0.636374 | tig0030662:-44603 | Msa1444190:CDS |
| AGAGGAACAAAACAAGGAGA+GGG | 0.645642 | tig0030662:+45177 | None:intergenic |
| ATAGTGGTTGATGGACCGAC+TGG | 0.650519 | tig0030662:-44666 | Msa1444190:CDS |
| TGGTTGAGAGGAACAAAACA+AGG | 0.653235 | tig0030662:+45171 | None:intergenic |
| CGAATATGAAGTATATCAGG+GGG | 0.672418 | tig0030662:+45317 | None:intergenic |
| TATCGTCGAGAAAGATGGTG+TGG | 0.672923 | tig0030662:+44916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATTTGTGAAATATAGA+AGG | + | tig0030662:44521-44540 | None:intergenic | 20.0% |
| !! | AAATATCAAAAAGTAACAAG+AGG | - | tig0030662:44533-44552 | Msa1444190:CDS | 20.0% |
| !! | AATATCAAAAAGTAACAAGA+GGG | - | tig0030662:44534-44553 | Msa1444190:CDS | 20.0% |
| !!! | AAGAATTCTAAAGATTGATA+TGG | + | tig0030662:44612-44631 | None:intergenic | 20.0% |
| !! | AATAGTATATGAGAAGAATT+GGG | - | tig0030662:45066-45085 | Msa1444190:CDS | 20.0% |
| !! | TGATATTTGTGAAATATAGA+AGG | + | tig0030662:44521-44540 | None:intergenic | 20.0% |
| !! | AAATATCAAAAAGTAACAAG+AGG | - | tig0030662:44533-44552 | Msa1444190:CDS | 20.0% |
| !! | AATATCAAAAAGTAACAAGA+GGG | - | tig0030662:44534-44553 | Msa1444190:CDS | 20.0% |
| !!! | AAGAATTCTAAAGATTGATA+TGG | + | tig0030662:44612-44631 | None:intergenic | 20.0% |
| !! | AATAGTATATGAGAAGAATT+GGG | - | tig0030662:45066-45085 | Msa1444190:CDS | 20.0% |
| !!! | TGATGCAATAATTTTGTTGT+TGG | + | tig0030662:44672-44691 | None:intergenic | 25.0% |
| ! | TTTGAATTCTTTCTCTTTGA+AGG | + | tig0030662:44726-44745 | None:intergenic | 25.0% |
| ! | GTTGAAAACCAAATATAAGA+AGG | + | tig0030662:44787-44806 | None:intergenic | 25.0% |
| !! | AGTTTATAAGCTTCTTTTGT+TGG | + | tig0030662:44947-44966 | None:intergenic | 25.0% |
| !!! | GTTTACATTTTGATGTTTGA+AGG | + | tig0030662:45024-45043 | None:intergenic | 25.0% |
| ! | CAATAGTATATGAGAAGAAT+TGG | - | tig0030662:45065-45084 | Msa1444190:CDS | 25.0% |
| !! | TGTATTCTAAAGAGAAGTTA+TGG | - | tig0030662:45269-45288 | Msa1444190:CDS | 25.0% |
| !!! | TTATGGCATTTTAGAATTAG+AGG | - | tig0030662:45286-45305 | Msa1444190:CDS | 25.0% |
| !!! | TGATGCAATAATTTTGTTGT+TGG | + | tig0030662:44672-44691 | None:intergenic | 25.0% |
| ! | TTTGAATTCTTTCTCTTTGA+AGG | + | tig0030662:44726-44745 | None:intergenic | 25.0% |
| ! | GTTGAAAACCAAATATAAGA+AGG | + | tig0030662:44787-44806 | None:intergenic | 25.0% |
| !! | AGTTTATAAGCTTCTTTTGT+TGG | + | tig0030662:44947-44966 | None:intergenic | 25.0% |
| !!! | GTTTACATTTTGATGTTTGA+AGG | + | tig0030662:45024-45043 | None:intergenic | 25.0% |
| ! | CAATAGTATATGAGAAGAAT+TGG | - | tig0030662:45065-45084 | Msa1444190:CDS | 25.0% |
| !! | TGTATTCTAAAGAGAAGTTA+TGG | - | tig0030662:45269-45288 | Msa1444190:CDS | 25.0% |
| !!! | TTATGGCATTTTAGAATTAG+AGG | - | tig0030662:45286-45305 | Msa1444190:CDS | 25.0% |
| ACGAATATGAAGTATATCAG+GGG | + | tig0030662:44447-44466 | None:intergenic | 30.0% | |
| GACGAATATGAAGTATATCA+GGG | + | tig0030662:44448-44467 | None:intergenic | 30.0% | |
| TAAAGATTGATATGGTTGAG+AGG | + | tig0030662:44604-44623 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGTTGGTGGAAAA+TGG | + | tig0030662:44662-44681 | None:intergenic | 30.0% |
| !!! | TGCAATAATTTTGTTGTTGG+TGG | + | tig0030662:44669-44688 | None:intergenic | 30.0% |
| ! | GATGAGATGATAATGAATTG+TGG | + | tig0030662:44809-44828 | None:intergenic | 30.0% |
| TTCTTCTCATATACTATTGC+AGG | + | tig0030662:45064-45083 | None:intergenic | 30.0% | |
| ACGAATATGAAGTATATCAG+GGG | + | tig0030662:44447-44466 | None:intergenic | 30.0% | |
| GACGAATATGAAGTATATCA+GGG | + | tig0030662:44448-44467 | None:intergenic | 30.0% | |
| TAAAGATTGATATGGTTGAG+AGG | + | tig0030662:44604-44623 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGTTGGTGGAAAA+TGG | + | tig0030662:44662-44681 | None:intergenic | 30.0% |
| !!! | TGCAATAATTTTGTTGTTGG+TGG | + | tig0030662:44669-44688 | None:intergenic | 30.0% |
| ! | GATGAGATGATAATGAATTG+TGG | + | tig0030662:44809-44828 | None:intergenic | 30.0% |
| TTCTTCTCATATACTATTGC+AGG | + | tig0030662:45064-45083 | None:intergenic | 30.0% | |
| CGAATATGAAGTATATCAGG+GGG | + | tig0030662:44446-44465 | None:intergenic | 35.0% | |
| GGACGAATATGAAGTATATC+AGG | + | tig0030662:44449-44468 | None:intergenic | 35.0% | |
| !! | TCTTTTACTTGAGTTGTGTG+TGG | + | tig0030662:44491-44510 | None:intergenic | 35.0% |
| ! | GAATTCTTTCTCTTTGAAGG+TGG | + | tig0030662:44723-44742 | None:intergenic | 35.0% |
| CCAAATATAAGAAGGTTGCA+TGG | + | tig0030662:44779-44798 | None:intergenic | 35.0% | |
| CCATGCAACCTTCTTATATT+TGG | - | tig0030662:44776-44795 | Msa1444190:CDS | 35.0% | |
| ATCTCATCAATGAATGAAGC+AGG | - | tig0030662:44821-44840 | Msa1444190:CDS | 35.0% | |
| ! | GTTGTTACCTTTCTTGTTGT+TGG | + | tig0030662:44881-44900 | None:intergenic | 35.0% |
| TAGAACACTAGCAGTGTAAA+TGG | + | tig0030662:45152-45171 | None:intergenic | 35.0% | |
| TGTACATGATGTAGATCGAA+TGG | - | tig0030662:45201-45220 | Msa1444190:CDS | 35.0% | |
| TAGATCGAATGGTAGAGAAA+TGG | - | tig0030662:45212-45231 | Msa1444190:CDS | 35.0% | |
| ! | TGGTAGAGAAATGGTTTTCT+TGG | - | tig0030662:45221-45240 | Msa1444190:CDS | 35.0% |
| ! | GGTAGAGAAATGGTTTTCTT+GGG | - | tig0030662:45222-45241 | Msa1444190:CDS | 35.0% |
| CGAATATGAAGTATATCAGG+GGG | + | tig0030662:44446-44465 | None:intergenic | 35.0% | |
| GGACGAATATGAAGTATATC+AGG | + | tig0030662:44449-44468 | None:intergenic | 35.0% | |
| !! | TCTTTTACTTGAGTTGTGTG+TGG | + | tig0030662:44491-44510 | None:intergenic | 35.0% |
| ! | GAATTCTTTCTCTTTGAAGG+TGG | + | tig0030662:44723-44742 | None:intergenic | 35.0% |
| CCAAATATAAGAAGGTTGCA+TGG | + | tig0030662:44779-44798 | None:intergenic | 35.0% | |
| CCATGCAACCTTCTTATATT+TGG | - | tig0030662:44776-44795 | Msa1444190:CDS | 35.0% | |
| ATCTCATCAATGAATGAAGC+AGG | - | tig0030662:44821-44840 | Msa1444190:CDS | 35.0% | |
| ! | GTTGTTACCTTTCTTGTTGT+TGG | + | tig0030662:44881-44900 | None:intergenic | 35.0% |
| TAGAACACTAGCAGTGTAAA+TGG | + | tig0030662:45152-45171 | None:intergenic | 35.0% | |
| TGTACATGATGTAGATCGAA+TGG | - | tig0030662:45201-45220 | Msa1444190:CDS | 35.0% | |
| TAGATCGAATGGTAGAGAAA+TGG | - | tig0030662:45212-45231 | Msa1444190:CDS | 35.0% | |
| ! | TGGTAGAGAAATGGTTTTCT+TGG | - | tig0030662:45221-45240 | Msa1444190:CDS | 35.0% |
| ! | GGTAGAGAAATGGTTTTCTT+GGG | - | tig0030662:45222-45241 | Msa1444190:CDS | 35.0% |
| GGAGGTGAAAATTGAACAAG+AGG | + | tig0030662:44470-44489 | None:intergenic | 40.0% | |
| ! | TTTACTTGAGTTGTGTGTGG+AGG | + | tig0030662:44488-44507 | None:intergenic | 40.0% |
| AGAGGAACAAAACAAGGAGA+GGG | + | tig0030662:44586-44605 | None:intergenic | 40.0% | |
| TGGTTGAGAGGAACAAAACA+AGG | + | tig0030662:44592-44611 | None:intergenic | 40.0% | |
| ! | TTCTTTCTCTTTGAAGGTGG+TGG | + | tig0030662:44720-44739 | None:intergenic | 40.0% |
| !! | GTTTGAAGGTGTCTTGAATC+TGG | + | tig0030662:45010-45029 | None:intergenic | 40.0% |
| GAAGAATTGGGATGTCATAG+TGG | - | tig0030662:45078-45097 | Msa1444190:CDS | 40.0% | |
| TAAATGGATGCCATTCTACC+CGG | + | tig0030662:45136-45155 | None:intergenic | 40.0% | |
| GGAGGTGAAAATTGAACAAG+AGG | + | tig0030662:44470-44489 | None:intergenic | 40.0% | |
| ! | TTTACTTGAGTTGTGTGTGG+AGG | + | tig0030662:44488-44507 | None:intergenic | 40.0% |
| AGAGGAACAAAACAAGGAGA+GGG | + | tig0030662:44586-44605 | None:intergenic | 40.0% | |
| TGGTTGAGAGGAACAAAACA+AGG | + | tig0030662:44592-44611 | None:intergenic | 40.0% | |
| ! | TTCTTTCTCTTTGAAGGTGG+TGG | + | tig0030662:44720-44739 | None:intergenic | 40.0% |
| !! | GTTTGAAGGTGTCTTGAATC+TGG | + | tig0030662:45010-45029 | None:intergenic | 40.0% |
| GAAGAATTGGGATGTCATAG+TGG | - | tig0030662:45078-45097 | Msa1444190:CDS | 40.0% | |
| TAAATGGATGCCATTCTACC+CGG | + | tig0030662:45136-45155 | None:intergenic | 40.0% | |
| GAGAGGAACAAAACAAGGAG+AGG | + | tig0030662:44587-44606 | None:intergenic | 45.0% | |
| ! | TTTGAAGGTGGTGGTGATGT+TGG | + | tig0030662:44711-44730 | None:intergenic | 45.0% |
| TATCGTCGAGAAAGATGGTG+TGG | + | tig0030662:44847-44866 | None:intergenic | 45.0% | |
| GTGGTTATCGTCGAGAAAGA+TGG | + | tig0030662:44852-44871 | None:intergenic | 45.0% | |
| !! | TTCTTGTTGTTGGTCTGTCG+TGG | + | tig0030662:44871-44890 | None:intergenic | 45.0% |
| CGACAGACCAACAACAAGAA+AGG | - | tig0030662:44871-44890 | Msa1444190:CDS | 45.0% | |
| ! | AGGTGTCTTGAATCTGGTTC+TGG | + | tig0030662:45004-45023 | None:intergenic | 45.0% |
| TGGGATGTCATAGTGGTTGA+TGG | - | tig0030662:45085-45104 | Msa1444190:CDS | 45.0% | |
| ! | ACTGCTAGTGTTCTAGCTAG+AGG | - | tig0030662:45157-45176 | Msa1444190:CDS | 45.0% |
| ! | CTAGTGTTCTAGCTAGAGGT+GGG | - | tig0030662:45161-45180 | Msa1444190:CDS | 45.0% |
| GAGAGGAACAAAACAAGGAG+AGG | + | tig0030662:44587-44606 | None:intergenic | 45.0% | |
| ! | TTTGAAGGTGGTGGTGATGT+TGG | + | tig0030662:44711-44730 | None:intergenic | 45.0% |
| TATCGTCGAGAAAGATGGTG+TGG | + | tig0030662:44847-44866 | None:intergenic | 45.0% | |
| GTGGTTATCGTCGAGAAAGA+TGG | + | tig0030662:44852-44871 | None:intergenic | 45.0% | |
| !! | TTCTTGTTGTTGGTCTGTCG+TGG | + | tig0030662:44871-44890 | None:intergenic | 45.0% |
| CGACAGACCAACAACAAGAA+AGG | - | tig0030662:44871-44890 | Msa1444190:CDS | 45.0% | |
| ! | AGGTGTCTTGAATCTGGTTC+TGG | + | tig0030662:45004-45023 | None:intergenic | 45.0% |
| TGGGATGTCATAGTGGTTGA+TGG | - | tig0030662:45085-45104 | Msa1444190:CDS | 45.0% | |
| ! | ACTGCTAGTGTTCTAGCTAG+AGG | - | tig0030662:45157-45176 | Msa1444190:CDS | 45.0% |
| ! | CTAGTGTTCTAGCTAGAGGT+GGG | - | tig0030662:45161-45180 | Msa1444190:CDS | 45.0% |
| !! | ATAGTGGTTGATGGACCGAC+TGG | - | tig0030662:45094-45113 | Msa1444190:CDS | 50.0% |
| ! | GCTAGTGTTCTAGCTAGAGG+TGG | - | tig0030662:45160-45179 | Msa1444190:CDS | 50.0% |
| ! | GTTCTAGCTAGAGGTGGGAA+TGG | - | tig0030662:45166-45185 | Msa1444190:CDS | 50.0% |
| TTACACAGGGCAGAAGGTAG+TGG | + | tig0030662:45323-45342 | None:intergenic | 50.0% | |
| !! | ATAGTGGTTGATGGACCGAC+TGG | - | tig0030662:45094-45113 | Msa1444190:CDS | 50.0% |
| ! | GCTAGTGTTCTAGCTAGAGG+TGG | - | tig0030662:45160-45179 | Msa1444190:CDS | 50.0% |
| ! | GTTCTAGCTAGAGGTGGGAA+TGG | - | tig0030662:45166-45185 | Msa1444190:CDS | 50.0% |
| TTACACAGGGCAGAAGGTAG+TGG | + | tig0030662:45323-45342 | None:intergenic | 50.0% | |
| ! | GAAGGTGGTGGTGATGTTGG+AGG | + | tig0030662:44708-44727 | None:intergenic | 55.0% |
| !! | TCTGGTTCTGGTGCACATGC+TGG | + | tig0030662:44992-45011 | None:intergenic | 55.0% |
| TGCCATTCTACCCGGTGACT+CGG | + | tig0030662:45128-45147 | None:intergenic | 55.0% | |
| ! | GAAGGTGGTGGTGATGTTGG+AGG | + | tig0030662:44708-44727 | None:intergenic | 55.0% |
| !! | TCTGGTTCTGGTGCACATGC+TGG | + | tig0030662:44992-45011 | None:intergenic | 55.0% |
| TGCCATTCTACCCGGTGACT+CGG | + | tig0030662:45128-45147 | None:intergenic | 55.0% | |
| ! | GACTCGGTCGAATCGCCAGT+CGG | + | tig0030662:45112-45131 | None:intergenic | 60.0% |
| TGGCGATTCGACCGAGTCAC+CGG | - | tig0030662:45114-45133 | Msa1444190:CDS | 60.0% | |
| GACCGAGTCACCGGGTAGAA+TGG | - | tig0030662:45123-45142 | Msa1444190:CDS | 60.0% | |
| ! | GACTCGGTCGAATCGCCAGT+CGG | + | tig0030662:45112-45131 | None:intergenic | 60.0% |
| TGGCGATTCGACCGAGTCAC+CGG | - | tig0030662:45114-45133 | Msa1444190:CDS | 60.0% | |
| GACCGAGTCACCGGGTAGAA+TGG | - | tig0030662:45123-45142 | Msa1444190:CDS | 60.0% | |
| GGCGATTCGACCGAGTCACC+GGG | - | tig0030662:45115-45134 | Msa1444190:CDS | 65.0% | |
| GGCGATTCGACCGAGTCACC+GGG | - | tig0030662:45115-45134 | Msa1444190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030662 | gene | 44440 | 45342 | 44440 | ID=Msa1444190;Name=Msa1444190 |
| tig0030662 | mRNA | 44440 | 45342 | 44440 | ID=Msa1444190-mRNA-1;Parent=Msa1444190;Name=Msa1444190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|300 |
| tig0030662 | exon | 44440 | 45342 | 44440 | ID=Msa1444190-mRNA-1:exon:14348;Parent=Msa1444190-mRNA-1 |
| tig0030662 | CDS | 44440 | 45342 | 44440 | ID=Msa1444190-mRNA-1:cds;Parent=Msa1444190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
