AlfalfaGEDB | Msa0282220

M. sativa cultivar zhongmu-4 / Msa0282220

KEGG: K10999
GO: GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047
PFAM: PF14569.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282220	XP_003594882.2	99.042	1044	10	0	1	1044	1	1044	0.0	2157

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282220	sp\|Q84JA6\|CESA4_ARATH	76.974	1064	210	8	1	1044	1	1049	0.0	1666

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282220	G7INF0	99.042	1044	10	0	1	1044	1	1044	0.0	2157

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018060	Msa0282220	0.812433	4.250332e-51	-8.615850e-47
Msa0040660	Msa0282220	0.849096	4.026657e-60	-8.615850e-47
Msa0071880	Msa0282220	0.804690	1.914159e-49	-8.615850e-47
Msa0108160	Msa0282220	0.826399	2.771139e-54	-8.615850e-47
Msa0164400	Msa0282220	0.800832	1.197616e-48	-8.615850e-47
Msa0174450	Msa0282220	0.813152	2.957857e-51	-8.615850e-47
Msa0186920	Msa0282220	0.818599	1.801923e-52	-8.615850e-47
Msa0191020	Msa0282220	0.801231	9.924765e-49	-8.615850e-47
Msa0193730	Msa0282220	0.816405	5.623821e-52	-8.615850e-47
Msa0193850	Msa0282220	0.865394	6.095395e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0282220	MtrunA17_Chr2g0296991	99.042	1044	10	0	1	1044	1	1044	0.0	2157
Msa0282220	MtrunA17_Chr3g0088821	63.745	1084	309	9	28	1044	12	1078	0.0	1414
Msa0282220	MtrunA17_Chr4g0073711	64.991	1074	300	12	7	1044	5	1038	0.0	1406
Msa0282220	MtrunA17_Chr1g0201731	61.815	1113	337	13	1	1044	3	1096	0.0	1389
Msa0282220	MtrunA17_Chr8g0352231	63.192	1084	315	9	28	1044	12	1078	0.0	1385
Msa0282220	MtrunA17_Chr1g0183381	71.690	929	201	8	119	1044	35	904	0.0	1365
Msa0282220	MtrunA17_Chr2g0284211	65.260	1019	295	13	31	1039	3	972	0.0	1342
Msa0282220	MtrunA17_Chr8g0383701	69.653	893	246	4	161	1044	219	1095	0.0	1335
Msa0282220	MtrunA17_Chr8g0383701	53.125	96	41	1	4	95	2	97	4.10e-23	106
Msa0282220	MtrunA17_Chr8g0379241	63.178	1032	317	12	32	1044	4	991	0.0	1324

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0282220	AT5G44030.1	76.974	1064	210	8	1	1044	1	1049	1666
Msa0282220	AT5G44030.2	75.297	1093	206	9	1	1044	1	1078	1658
Msa0282220	AT5G05170.1	64.958	1073	302	11	28	1044	11	1065	1425
Msa0282220	AT5G09870.1	62.615	1086	342	8	4	1044	2	1068	1413
Msa0282220	AT5G17420.1	65.449	1068	293	14	7	1044	5	1026	1407
Msa0282220	AT5G64740.1	61.931	1098	345	11	4	1044	2	1083	1401
Msa0282220	AT2G21770.1	61.741	1103	342	12	4	1044	2	1086	1397
Msa0282220	AT4G32410.1	62.187	1079	334	12	7	1029	5	1065	1382
Msa0282220	AT4G39350.1	61.601	1099	346	13	4	1044	2	1082	1358
Msa0282220	AT2G25540.1	61.905	1050	341	12	19	1029	16	1045	1353

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Find 252 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATAGTATTGAACCA+AGG	0.604899	2_3:+18049641	Msa0282220:CDS
AAACAGGACTCCTACTATTG+TGG	0.584032	2_3:+18053050	Msa0282220:CDS
AAACATCAACAGGCGAAAGC+TGG	0.527228	2_3:-18049429	None:intergenic
AAACCAAATACTAGCAAGGT+TGG	0.528295	2_3:-18052608	None:intergenic
AAACTTCTGAGTTTGCTCGA+AGG	0.618206	2_3:+18049602	Msa0282220:CDS
AAAGGCTCTGAAGAAACCTG+AGG	0.698711	2_3:+18050212	Msa0282220:CDS
AAAGGGCTCGATGGTATTCA+AGG	0.505353	2_3:+18051055	Msa0282220:CDS
AAAGTAAGGCAAGAAAAGAG+AGG	0.661249	2_3:+18048973	Msa0282220:CDS
AAAGTATAGTATTGAACCAA+GGG	0.568992	2_3:+18049642	Msa0282220:CDS
AAAGTTGAAGCAATGAAAAC+CGG	0.500806	2_3:-18051430	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGAAAATAGGAGTTAGA+AGG	-	chr2_3:18047809-18047828	None:intergenic	30.0%
ACCAAAAAGAAAGAAGGAAA+AGG	-	chr2_3:18047934-18047953	None:intergenic	30.0%
GAGATTGGATATAAGGAAAA+TGG	+	chr2_3:18048129-18048148	Msa0282220:CDS	30.0%
AAATACTGAATCAGATTGGA+CGG	-	chr2_3:18048440-18048459	None:intergenic	30.0%
TGATTATTTACAGGAAAGTG+TGG	+	chr2_3:18048731-18048750	Msa0282220:intron	30.0%
TCACTTCCTGATTAACAATT+TGG	+	chr2_3:18049058-18049077	Msa0282220:intron	30.0%
TCAGCCATACTGTAATAATA+AGG	-	chr2_3:18049127-18049146	None:intergenic	30.0%
ATCACAATTACTATTCGGTA+TGG	-	chr2_3:18049202-18049221	None:intergenic	30.0%
GTCTCATCACAATTACTATT+CGG	-	chr2_3:18049207-18049226	None:intergenic	30.0%
TCTATAAGATTTGAACGTGA+AGG	+	chr2_3:18049397-18049416	Msa0282220:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	18047770	18053477	18047770	ID=Msa0282220;Name=Msa0282220
chr2_3	mRNA	18047770	18053477	18047770	ID=Msa0282220-mRNA-1;Parent=Msa0282220;Name=Msa0282220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=85\|1\|1\|1\|1\|1\|12\|292\|1044
chr2_3	exon	18047770	18047923	18047770	ID=Msa0282220-mRNA-1:exon:7386;Parent=Msa0282220-mRNA-1
chr2_3	exon	18048072	18048273	18048072	ID=Msa0282220-mRNA-1:exon:7387;Parent=Msa0282220-mRNA-1
chr2_3	exon	18048508	18048626	18048508	ID=Msa0282220-mRNA-1:exon:7388;Parent=Msa0282220-mRNA-1
chr2_3	exon	18048744	18048798	18048744	ID=Msa0282220-mRNA-1:exon:7389;Parent=Msa0282220-mRNA-1
chr2_3	exon	18048899	18049049	18048899	ID=Msa0282220-mRNA-1:exon:7390;Parent=Msa0282220-mRNA-1
chr2_3	exon	18049138	18049750	18049138	ID=Msa0282220-mRNA-1:exon:7391;Parent=Msa0282220-mRNA-1
chr2_3	exon	18050168	18050305	18050168	ID=Msa0282220-mRNA-1:exon:7392;Parent=Msa0282220-mRNA-1
chr2_3	exon	18050516	18050641	18050516	ID=Msa0282220-mRNA-1:exon:7393;Parent=Msa0282220-mRNA-1
chr2_3	exon	18050742	18050954	18050742	ID=Msa0282220-mRNA-1:exon:7394;Parent=Msa0282220-mRNA-1
chr2_3	exon	18051046	18051561	18051046	ID=Msa0282220-mRNA-1:exon:7395;Parent=Msa0282220-mRNA-1
chr2_3	exon	18051710	18052060	18051710	ID=Msa0282220-mRNA-1:exon:7396;Parent=Msa0282220-mRNA-1
chr2_3	exon	18052604	18053477	18052604	ID=Msa0282220-mRNA-1:exon:7397;Parent=Msa0282220-mRNA-1
chr2_3	five_prime_UTR	18047770	18047854	18047770	ID=Msa0282220-mRNA-1:five_prime_utr;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18047855	18047923	18047855	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18048072	18048273	18048072	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18048508	18048626	18048508	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18048744	18048798	18048744	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18048899	18049049	18048899	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18049138	18049750	18049138	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18050168	18050305	18050168	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18050516	18050641	18050516	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18050742	18050954	18050742	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18051046	18051561	18051046	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18051710	18052060	18051710	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	CDS	18052604	18053185	18052604	ID=Msa0282220-mRNA-1:cds;Parent=Msa0282220-mRNA-1
chr2_3	three_prime_UTR	18053186	18053477	18053186	ID=Msa0282220-mRNA-1:three_prime_utr;Parent=Msa0282220-mRNA-1

Gene Sequence

>Msa0282220

ATGGCCACAAACACCATGGCTGGCTTGATCACCGGCTCTAATTCTCATTTCTCAAATGACTCTGATGAGCATAAGCCTCCTCCTACCAGTAAATCTTCATCGAAAATATGTCGAGTTTGTGGTGATGAGATTGGATATAAGGAAAATGGAGAGCTTTTTGTGGCTTGTCATGTGTGTGCATTTCCTGTTTGTAAGCCTTGTTATGAGTATGAAAGGAGTGAAGGGAATCAATGTTGTCCTCAATGCAACACTCGCTATAAGCGCCATAAAGGTTGTCCAAGAGTGGTTGGAGATGAAGATGAAAACCTTGATGGAGATGATTTTGAAGATGAGTTTCCGGTCAAGAATCATCATGATGATCTAGACCAGAACCGCGATGTTAATCATGTGGAAAGTGTGGATTACAATCAACAGAAATTGCATACTTTTTCTTCAGCAGGAAGTGTTACTGGCAAGGATTTGGAAGGGGAGAAAGAATTTTACAGCAATGAAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTAAGGCAAGAAAAGAGAGGTCTATTAAACAAAGAGGATGGTAAAGAAGACCAAGGTGAAGAAGATGAGTACCTTATGGCTGAAGCAAGACAACCATTATGGCGCAAAGTTCCAATACCATCAAGCTTAATAAATCCATACCGAATAGTAATTGTGATGAGACTTGTAATCCTAGCTTTCTTCTTCCGTTTCCGTATCTTAACACCTGCATATGATGCATACCCTCTATGGCTCATATCAGTAATATGTGAAATATGGTTTGCACTGTCATGGATACTTGACCAGTTTCCAAAATGGTTACCAATCACACGCGAAACTTACTTAGACCGTTTATCTATAAGATTTGAACGTGAAGGCGAACCAAACCAGCTTTCGCCTGTTGATGTTTTTGTTAGTTCTGTTGATCCTTTGAAAGAACCGCCTATTATAACAGCAAACACTGTTCTGTCCATACTTTCTGTTGACTACCCTGTTGAGAAAGTTACATGCTATGTATCAGATGATGGTGCTTCTATGCTTTTGTTTGATTGTTTGGCTGAAACTTCTGAGTTTGCTCGAAGGTGGGTTCCTTTTTGTAAAAAGTATAGTATTGAACCAAGGGCACCTGAGTATTACTTTAATGAGAAGATTGATTACTTGAAGGATAAGGTTGAGCCTACTTTTGTCAAGGAAAGAAGGTCTATGAAGAGAGAATATGAAGAATTTAAAGTGAAAATTAACGCTTTGGTGGCAAAGGCTCTGAAGAAACCTGAGGAGGGTTGGGTTATGCAAGATGGAACTCCATGGCCTGGTAACAACACTCGTGATCATCCAGGGATGATTCAGGTATACTTAGGAAGTGCTGGTGCACTAGACGTGGAAGGCAAGGAACTGCCAAAACTCGTGTATATTTCCCGTGAAAAACGTCCTGGTTATCCACATCACAAGAAAGCTGGTGCCATGAACGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTCGATTGTGATCACTACATCAACAATAGCAAGGCTATTAGAGAGGCCATGTGCTTCCTAATGGATCCTCAACTAGGGAAGAAACTCTGCTATGTCCAATTTCCTCAAAGATTTGATGGTATTGATCGTCACGATCGATATGCTAATCGCAACACTGTCTTCTTTGATATCAATATGAAAGGGCTCGATGGTATTCAAGGTCCAGTGTATGTCGGTACCGGAACTGTGTTCAACAGACAAGCATTGTATGGCTATGATCCACCAGTTTCTGAGAAAAGGCCAAAGATGACATGTGATTGCTGGCCTAAATGGTGTTGCTTTTGTTGTGGTTCAAGGAAAACCAAATCAAAAAAGAAGTCAGGAACAAATGGAAGAAGTCTCTTTAGTAGATTGTACAAGAAGAAGAAAATGGGAGGAAAAGATTATGTTAGAAAAGGATCTGGTTCCATGTTTGATCTCGAAGAGATTGAAGAAGGACTTGAAGGGTACGAGGAGCTAGAAAAGTCAACACTCATGTCACAGAAAAATTTCGAGAAGCGATTTGGTCAGTCTCCGGTTTTCATTGCTTCAACTTTGATGGAAAATGGAGGACTTCCTGAAGGCACAAATACGCAATCATTGGTTAAGGAAGCCATTCATAACATAAGTTGTGGCTATGAAGAGAAGACTGACTGGGGAAAAGAGATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGGCCTGCTTTCAAGGGGTCTGCACCTATCAATCTGTCAGATAGGTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAGATTTTCCTTAGTCGCCATTGTCCGTTGTGGTATGGTTATGGAGGAAAACTAAAGTATCTAGAGAGGTTGGCTTATACTAATACCATTGTTTATCCATTCACTTCAATCCCTTTGCTAGCATACTGCACAATTCCAGCTGTGTGTCTTCTGACAGGAAAGTTCATCATTCCTACTCTGACCAACCTTGCTAGTATTTGGTTTATGGCACTATTTATATCCATCATTTTAACCGGTGTACTCGAGCTTCGATGGAGTGGAGTTGCGATCGAAGACTGGTGGAGAAACGAGCAATTCTGGGTGATTGGAGGTGTATCAGCACATCTTTTTGCAGTGTTTCAAGGTTTCCTCAAAGTTCTAGCTGGAGTAGACACAAACTTTACTGTCACAGCAAAAGCAGCAGATGATGCTGAATTCGGAGAGTTATATCTCTTCAAATGGACAACACTTCTCATTCCACCAACCACTCTTATAATCTTGAACATTGTTGGCGTTGTTGCTGGTGTCTCTGATGCTATTAACAGTGGTAGTGGTTCATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTCATTGTTCATTTATATCCTTTCCTTAAAGGTCTTATGGGAAAACAAAACAGGACTCCTACTATTGTGGTACTTTGGTCAATCCTTTTGGCATCAATTTTCTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCTAAGCAAACTGGTCCTATTCTCAAACAATGTGGTGTAGAATGCTGA

Protein sequence

>Msa0282220

MATNTMAGLITGSNSHFSNDSDEHKPPPTSKSSSKICRVCGDEIGYKENGELFVACHVCAFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVVGDEDENLDGDDFEDEFPVKNHHDDLDQNRDVNHVESVDYNQQKLHTFSSAGSVTGKDLEGEKEFYSNEEWQERVEKWKVRQEKRGLLNKEDGKEDQGEEDEYLMAEARQPLWRKVPIPSSLINPYRIVIVMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVFVSSVDPLKEPPIITANTVLSILSVDYPVEKVTCYVSDDGASMLLFDCLAETSEFARRWVPFCKKYSIEPRAPEYYFNEKIDYLKDKVEPTFVKERRSMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPKLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPKWCCFCCGSRKTKSKKKSGTNGRSLFSRLYKKKKMGGKDYVRKGSGSMFDLEEIEEGLEGYEELEKSTLMSQKNFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTDWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASIWFMALFISIILTGVLELRWSGVAIEDWWRNEQFWVIGGVSAHLFAVFQGFLKVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINSGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC*