Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343400 | KEH31718.1 | 93.667 | 300 | 17 | 1 | 1 | 300 | 1 | 298 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343400 | sp|Q9T0F7|GXM2_ARATH | 38.819 | 237 | 131 | 6 | 69 | 300 | 57 | 284 | 8.29e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343400 | A0A072URM4 | 93.667 | 300 | 17 | 1 | 1 | 300 | 1 | 298 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0199960 | Msa1343400 | 0.803420 | 3.515918e-49 | -8.615850e-47 |
| Msa1343400 | Msa1430750 | 0.822801 | 1.950777e-53 | -8.615850e-47 |
| Msa1343400 | Msa1436420 | 0.813624 | 2.329129e-51 | -8.615850e-47 |
| Msa1343400 | Msa1444190 | 0.966296 | 9.878777e-126 | -8.615850e-47 |
| Msa1343400 | Msa1448590 | 0.892849 | 1.085828e-74 | -8.615850e-47 |
| Msa0243600 | Msa1343400 | 0.823868 | 1.098792e-53 | -8.615850e-47 |
| Msa0282220 | Msa1343400 | 0.824220 | 9.081020e-54 | -8.615850e-47 |
| Msa1222590 | Msa1343400 | 0.821697 | 3.517874e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343400 | MtrunA17_Chr4g0057371 | 93.667 | 300 | 17 | 1 | 1 | 300 | 1 | 298 | 0.0 | 580 |
| Msa1343400 | MtrunA17_Chr3g0122451 | 39.583 | 192 | 106 | 5 | 113 | 298 | 99 | 286 | 8.02e-41 | 143 |
| Msa1343400 | MtrunA17_Chr3g0077611 | 35.833 | 240 | 142 | 6 | 64 | 299 | 67 | 298 | 1.01e-40 | 143 |
| Msa1343400 | MtrunA17_Chr8g0377381 | 34.940 | 249 | 147 | 7 | 52 | 288 | 33 | 278 | 5.36e-40 | 141 |
| Msa1343400 | MtrunA17_Chr4g0053231 | 33.700 | 273 | 152 | 8 | 51 | 298 | 28 | 296 | 8.50e-39 | 138 |
| Msa1343400 | MtrunA17_Chr4g0044461 | 35.586 | 222 | 128 | 6 | 87 | 298 | 77 | 293 | 1.72e-37 | 135 |
| Msa1343400 | MtrunA17_Chr4g0044451 | 36.486 | 222 | 128 | 6 | 85 | 298 | 78 | 294 | 1.35e-35 | 130 |
| Msa1343400 | MtrunA17_Chr7g0225261 | 33.333 | 246 | 137 | 7 | 70 | 295 | 53 | 291 | 1.47e-32 | 122 |
| Msa1343400 | MtrunA17_Chr7g0225381 | 36.139 | 202 | 118 | 5 | 98 | 295 | 97 | 291 | 2.33e-32 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343400 | AT4G24910.1 | 42.812 | 313 | 158 | 6 | 1 | 298 | 1 | 307 | 1.87e-76 | 236 |
| Msa1343400 | AT1G71690.1 | 37.557 | 221 | 126 | 4 | 87 | 299 | 79 | 295 | 1.07e-44 | 154 |
| Msa1343400 | AT4G09990.1 | 38.819 | 237 | 131 | 6 | 69 | 300 | 57 | 284 | 8.43e-44 | 151 |
| Msa1343400 | AT1G33800.1 | 37.815 | 238 | 135 | 6 | 67 | 300 | 63 | 291 | 9.28e-43 | 149 |
| Msa1343400 | AT1G09610.1 | 37.387 | 222 | 124 | 5 | 87 | 299 | 67 | 282 | 2.56e-42 | 147 |
| Msa1343400 | AT2G15440.1 | 37.441 | 211 | 120 | 4 | 85 | 288 | 84 | 289 | 2.22e-38 | 138 |
| Msa1343400 | AT5G67210.1 | 34.965 | 286 | 137 | 10 | 51 | 298 | 29 | 303 | 2.91e-38 | 137 |
| Msa1343400 | AT3G50220.1 | 36.100 | 241 | 135 | 7 | 68 | 298 | 79 | 310 | 1.83e-37 | 135 |
| Msa1343400 | AT1G67330.1 | 33.047 | 233 | 141 | 4 | 69 | 295 | 60 | 283 | 6.21e-36 | 130 |
| Msa1343400 | AT1G27930.1 | 34.634 | 205 | 128 | 3 | 87 | 288 | 71 | 272 | 1.47e-34 | 127 |
Find 53 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGCAACCTTCTTATATT+TGG | 0.150659 | tig0006396:+6400 | Msa1343400:CDS |
| GTTGTTACCTTTCTTGTTGT+TGG | 0.253770 | tig0006396:-6502 | None:intergenic |
| GGACGAATATGAAGTATATC+AGG | 0.271304 | tig0006396:-6070 | None:intergenic |
| TTCTTCTCATATACTATTGC+AGG | 0.287959 | tig0006396:-6685 | None:intergenic |
| CAATAGTATATGAGAAGAAT+TGG | 0.309323 | tig0006396:+6689 | Msa1343400:CDS |
| TTTGAATTCTTTCTCTTTGA+AGG | 0.320540 | tig0006396:-6347 | None:intergenic |
| AGGTGTCTTGAATCTGGTTC+TGG | 0.346080 | tig0006396:-6625 | None:intergenic |
| AAGAATTCTAAAGATTGATA+TGG | 0.352843 | tig0006396:-6233 | None:intergenic |
| TAGAACACTAGCAGTGTAAA+TGG | 0.373143 | tig0006396:-6773 | None:intergenic |
| TGATATTTGTGAAATATAGA+AGG | 0.376168 | tig0006396:-6142 | None:intergenic |
| GTTTGAAGGTGTCTTGAATC+TGG | 0.376427 | tig0006396:-6631 | None:intergenic |
| TTCTTTCTCTTTGAAGGTGG+TGG | 0.398188 | tig0006396:-6341 | None:intergenic |
| TGTATTCTAAAGAGAAGTTA+TGG | 0.417535 | tig0006396:+6893 | Msa1343400:CDS |
| TCTGGTTCTGGTGCACATGC+TGG | 0.428572 | tig0006396:-6613 | None:intergenic |
| GACCGAGTCACCGGGTAGAA+TGG | 0.459909 | tig0006396:+6747 | Msa1343400:CDS |
| TGGGATGTCATAGTGGTTGA+TGG | 0.465525 | tig0006396:+6709 | Msa1343400:CDS |
| TTTGAAGGTGGTGGTGATGT+TGG | 0.474869 | tig0006396:-6332 | None:intergenic |
| GAAGGTGGTGGTGATGTTGG+AGG | 0.474884 | tig0006396:-6329 | None:intergenic |
| GTGGTTATCGTCGAGAAAGA+TGG | 0.500029 | tig0006396:-6473 | None:intergenic |
| AATAGTATATGAGAAGAATT+GGG | 0.500479 | tig0006396:+6690 | Msa1343400:CDS |
| GAATTCTTTCTCTTTGAAGG+TGG | 0.501964 | tig0006396:-6344 | None:intergenic |
| TAGATCGAATGGTAGAGAAA+TGG | 0.504798 | tig0006396:+6836 | Msa1343400:CDS |
| ATCTCATCAATGAATGAAGC+AGG | 0.514333 | tig0006396:+6445 | Msa1343400:CDS |
| TGCCATTCTACCCGGTGACT+CGG | 0.528875 | tig0006396:-6749 | None:intergenic |
| CGACAGACCAACAACAAGAA+AGG | 0.531476 | tig0006396:+6495 | Msa1343400:CDS |
| TTACACAGGGCAGAAGGTAG+TGG | 0.534034 | tig0006396:-6944 | None:intergenic |
| GTTGAAAACCAAATATAAGA+AGG | 0.546843 | tig0006396:-6408 | None:intergenic |
| TTCTTGTTGTTGGTCTGTCG+TGG | 0.555462 | tig0006396:-6492 | None:intergenic |
| ACTCTTATATGTACTTACAC+AGG | 0.565037 | tig0006396:-6958 | None:intergenic |
| GACGAATATGAAGTATATCA+GGG | 0.565386 | tig0006396:-6069 | None:intergenic |
| CTCTTATATGTACTTACACA+GGG | 0.575836 | tig0006396:-6957 | None:intergenic |
| GTTCTAGCTAGAGGTGGGAA+TGG | 0.584379 | tig0006396:+6790 | Msa1343400:CDS |
| ACGAATATGAAGTATATCAG+GGG | 0.587185 | tig0006396:-6068 | None:intergenic |
| CCAAATATAAGAAGGTTGCA+TGG | 0.588035 | tig0006396:-6400 | None:intergenic |
| TTTACTTGAGTTGTGTGTGG+AGG | 0.592543 | tig0006396:-6109 | None:intergenic |
| TAAATGGATGCCATTCTACC+CGG | 0.598005 | tig0006396:-6757 | None:intergenic |
| GCTAGTGTTCTAGCTAGAGG+TGG | 0.600870 | tig0006396:+6784 | Msa1343400:CDS |
| GACTCGGTCGAATCGCCAGT+CGG | 0.604950 | tig0006396:-6733 | None:intergenic |
| ATGTACTTACACAGGGCAGA+AGG | 0.609585 | tig0006396:-6950 | None:intergenic |
| TAAAGATTGATATGGTTGAG+AGG | 0.613361 | tig0006396:-6225 | None:intergenic |
| TGTACATGATGTAGATCGAA+TGG | 0.614483 | tig0006396:+6825 | Msa1343400:CDS |
| GATGAGATGATAATGAATTG+TGG | 0.616879 | tig0006396:-6430 | None:intergenic |
| GAAGAATTGGGATGTCATAG+TGG | 0.623144 | tig0006396:+6702 | Msa1343400:CDS |
| CTAGTGTTCTAGCTAGAGGT+GGG | 0.628712 | tig0006396:+6785 | Msa1343400:CDS |
| GAGAGGAACAAAACAAGGAG+AGG | 0.631401 | tig0006396:-6208 | None:intergenic |
| GGAGGTGAAAATTGAACAAG+AGG | 0.631643 | tig0006396:-6091 | None:intergenic |
| GGCGATTCGACCGAGTCACC+GGG | 0.635705 | tig0006396:+6739 | Msa1343400:CDS |
| ACTGCTAGTGTTCTAGCTAG+AGG | 0.636374 | tig0006396:+6781 | Msa1343400:CDS |
| AGAGGAACAAAACAAGGAGA+GGG | 0.645642 | tig0006396:-6207 | None:intergenic |
| ATAGTGGTTGATGGACCGAC+TGG | 0.650519 | tig0006396:+6718 | Msa1343400:CDS |
| TGGTTGAGAGGAACAAAACA+AGG | 0.653235 | tig0006396:-6213 | None:intergenic |
| CGAATATGAAGTATATCAGG+GGG | 0.672418 | tig0006396:-6067 | None:intergenic |
| TATCGTCGAGAAAGATGGTG+TGG | 0.672923 | tig0006396:-6468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATTTGTGAAATATAGA+AGG | - | tig0006396:6145-6164 | None:intergenic | 20.0% |
| !! | AAATATCAAAAAGTAACAAG+AGG | + | tig0006396:6157-6176 | Msa1343400:CDS | 20.0% |
| !! | AATATCAAAAAGTAACAAGA+GGG | + | tig0006396:6158-6177 | Msa1343400:CDS | 20.0% |
| !!! | AAGAATTCTAAAGATTGATA+TGG | - | tig0006396:6236-6255 | None:intergenic | 20.0% |
| !! | AATAGTATATGAGAAGAATT+GGG | + | tig0006396:6690-6709 | Msa1343400:CDS | 20.0% |
| !! | TGATATTTGTGAAATATAGA+AGG | - | tig0006396:6145-6164 | None:intergenic | 20.0% |
| !! | AAATATCAAAAAGTAACAAG+AGG | + | tig0006396:6157-6176 | Msa1343400:CDS | 20.0% |
| !! | AATATCAAAAAGTAACAAGA+GGG | + | tig0006396:6158-6177 | Msa1343400:CDS | 20.0% |
| !!! | AAGAATTCTAAAGATTGATA+TGG | - | tig0006396:6236-6255 | None:intergenic | 20.0% |
| !! | AATAGTATATGAGAAGAATT+GGG | + | tig0006396:6690-6709 | Msa1343400:CDS | 20.0% |
| !!! | TGATGCAATAATTTTGTTGT+TGG | - | tig0006396:6296-6315 | None:intergenic | 25.0% |
| ! | TTTGAATTCTTTCTCTTTGA+AGG | - | tig0006396:6350-6369 | None:intergenic | 25.0% |
| ! | GTTGAAAACCAAATATAAGA+AGG | - | tig0006396:6411-6430 | None:intergenic | 25.0% |
| !! | AGTTTATAAGCTTCTTTTGT+TGG | - | tig0006396:6571-6590 | None:intergenic | 25.0% |
| !!! | GTTTACATTTTGATGTTTGA+AGG | - | tig0006396:6648-6667 | None:intergenic | 25.0% |
| ! | CAATAGTATATGAGAAGAAT+TGG | + | tig0006396:6689-6708 | Msa1343400:CDS | 25.0% |
| !! | TGTATTCTAAAGAGAAGTTA+TGG | + | tig0006396:6893-6912 | Msa1343400:CDS | 25.0% |
| !!! | TTATGGCATTTTAGAATTAG+AGG | + | tig0006396:6910-6929 | Msa1343400:CDS | 25.0% |
| !!! | TGATGCAATAATTTTGTTGT+TGG | - | tig0006396:6296-6315 | None:intergenic | 25.0% |
| ! | TTTGAATTCTTTCTCTTTGA+AGG | - | tig0006396:6350-6369 | None:intergenic | 25.0% |
| ! | GTTGAAAACCAAATATAAGA+AGG | - | tig0006396:6411-6430 | None:intergenic | 25.0% |
| !! | AGTTTATAAGCTTCTTTTGT+TGG | - | tig0006396:6571-6590 | None:intergenic | 25.0% |
| !!! | GTTTACATTTTGATGTTTGA+AGG | - | tig0006396:6648-6667 | None:intergenic | 25.0% |
| ! | CAATAGTATATGAGAAGAAT+TGG | + | tig0006396:6689-6708 | Msa1343400:CDS | 25.0% |
| !! | TGTATTCTAAAGAGAAGTTA+TGG | + | tig0006396:6893-6912 | Msa1343400:CDS | 25.0% |
| !!! | TTATGGCATTTTAGAATTAG+AGG | + | tig0006396:6910-6929 | Msa1343400:CDS | 25.0% |
| ACGAATATGAAGTATATCAG+GGG | - | tig0006396:6071-6090 | None:intergenic | 30.0% | |
| GACGAATATGAAGTATATCA+GGG | - | tig0006396:6072-6091 | None:intergenic | 30.0% | |
| TAAAGATTGATATGGTTGAG+AGG | - | tig0006396:6228-6247 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGTTGGTGGAAAA+TGG | - | tig0006396:6286-6305 | None:intergenic | 30.0% |
| !!! | TGCAATAATTTTGTTGTTGG+TGG | - | tig0006396:6293-6312 | None:intergenic | 30.0% |
| ! | GATGAGATGATAATGAATTG+TGG | - | tig0006396:6433-6452 | None:intergenic | 30.0% |
| TTCTTCTCATATACTATTGC+AGG | - | tig0006396:6688-6707 | None:intergenic | 30.0% | |
| ACGAATATGAAGTATATCAG+GGG | - | tig0006396:6071-6090 | None:intergenic | 30.0% | |
| GACGAATATGAAGTATATCA+GGG | - | tig0006396:6072-6091 | None:intergenic | 30.0% | |
| TAAAGATTGATATGGTTGAG+AGG | - | tig0006396:6228-6247 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTGTTGGTGGAAAA+TGG | - | tig0006396:6286-6305 | None:intergenic | 30.0% |
| !!! | TGCAATAATTTTGTTGTTGG+TGG | - | tig0006396:6293-6312 | None:intergenic | 30.0% |
| ! | GATGAGATGATAATGAATTG+TGG | - | tig0006396:6433-6452 | None:intergenic | 30.0% |
| TTCTTCTCATATACTATTGC+AGG | - | tig0006396:6688-6707 | None:intergenic | 30.0% | |
| CGAATATGAAGTATATCAGG+GGG | - | tig0006396:6070-6089 | None:intergenic | 35.0% | |
| GGACGAATATGAAGTATATC+AGG | - | tig0006396:6073-6092 | None:intergenic | 35.0% | |
| !! | TCTTTTACTTGAGTTGTGTG+TGG | - | tig0006396:6115-6134 | None:intergenic | 35.0% |
| ! | GAATTCTTTCTCTTTGAAGG+TGG | - | tig0006396:6347-6366 | None:intergenic | 35.0% |
| CCAAATATAAGAAGGTTGCA+TGG | - | tig0006396:6403-6422 | None:intergenic | 35.0% | |
| CCATGCAACCTTCTTATATT+TGG | + | tig0006396:6400-6419 | Msa1343400:CDS | 35.0% | |
| ATCTCATCAATGAATGAAGC+AGG | + | tig0006396:6445-6464 | Msa1343400:CDS | 35.0% | |
| ! | GTTGTTACCTTTCTTGTTGT+TGG | - | tig0006396:6505-6524 | None:intergenic | 35.0% |
| TAGAACACTAGCAGTGTAAA+TGG | - | tig0006396:6776-6795 | None:intergenic | 35.0% | |
| TGTACATGATGTAGATCGAA+TGG | + | tig0006396:6825-6844 | Msa1343400:CDS | 35.0% | |
| TAGATCGAATGGTAGAGAAA+TGG | + | tig0006396:6836-6855 | Msa1343400:CDS | 35.0% | |
| ! | TGGTAGAGAAATGGTTTTCT+TGG | + | tig0006396:6845-6864 | Msa1343400:CDS | 35.0% |
| ! | GGTAGAGAAATGGTTTTCTT+GGG | + | tig0006396:6846-6865 | Msa1343400:CDS | 35.0% |
| CGAATATGAAGTATATCAGG+GGG | - | tig0006396:6070-6089 | None:intergenic | 35.0% | |
| GGACGAATATGAAGTATATC+AGG | - | tig0006396:6073-6092 | None:intergenic | 35.0% | |
| !! | TCTTTTACTTGAGTTGTGTG+TGG | - | tig0006396:6115-6134 | None:intergenic | 35.0% |
| ! | GAATTCTTTCTCTTTGAAGG+TGG | - | tig0006396:6347-6366 | None:intergenic | 35.0% |
| CCAAATATAAGAAGGTTGCA+TGG | - | tig0006396:6403-6422 | None:intergenic | 35.0% | |
| CCATGCAACCTTCTTATATT+TGG | + | tig0006396:6400-6419 | Msa1343400:CDS | 35.0% | |
| ATCTCATCAATGAATGAAGC+AGG | + | tig0006396:6445-6464 | Msa1343400:CDS | 35.0% | |
| ! | GTTGTTACCTTTCTTGTTGT+TGG | - | tig0006396:6505-6524 | None:intergenic | 35.0% |
| TAGAACACTAGCAGTGTAAA+TGG | - | tig0006396:6776-6795 | None:intergenic | 35.0% | |
| TGTACATGATGTAGATCGAA+TGG | + | tig0006396:6825-6844 | Msa1343400:CDS | 35.0% | |
| TAGATCGAATGGTAGAGAAA+TGG | + | tig0006396:6836-6855 | Msa1343400:CDS | 35.0% | |
| ! | TGGTAGAGAAATGGTTTTCT+TGG | + | tig0006396:6845-6864 | Msa1343400:CDS | 35.0% |
| ! | GGTAGAGAAATGGTTTTCTT+GGG | + | tig0006396:6846-6865 | Msa1343400:CDS | 35.0% |
| GGAGGTGAAAATTGAACAAG+AGG | - | tig0006396:6094-6113 | None:intergenic | 40.0% | |
| ! | TTTACTTGAGTTGTGTGTGG+AGG | - | tig0006396:6112-6131 | None:intergenic | 40.0% |
| AGAGGAACAAAACAAGGAGA+GGG | - | tig0006396:6210-6229 | None:intergenic | 40.0% | |
| TGGTTGAGAGGAACAAAACA+AGG | - | tig0006396:6216-6235 | None:intergenic | 40.0% | |
| ! | TTCTTTCTCTTTGAAGGTGG+TGG | - | tig0006396:6344-6363 | None:intergenic | 40.0% |
| !! | GTTTGAAGGTGTCTTGAATC+TGG | - | tig0006396:6634-6653 | None:intergenic | 40.0% |
| GAAGAATTGGGATGTCATAG+TGG | + | tig0006396:6702-6721 | Msa1343400:CDS | 40.0% | |
| TAAATGGATGCCATTCTACC+CGG | - | tig0006396:6760-6779 | None:intergenic | 40.0% | |
| GGAGGTGAAAATTGAACAAG+AGG | - | tig0006396:6094-6113 | None:intergenic | 40.0% | |
| ! | TTTACTTGAGTTGTGTGTGG+AGG | - | tig0006396:6112-6131 | None:intergenic | 40.0% |
| AGAGGAACAAAACAAGGAGA+GGG | - | tig0006396:6210-6229 | None:intergenic | 40.0% | |
| TGGTTGAGAGGAACAAAACA+AGG | - | tig0006396:6216-6235 | None:intergenic | 40.0% | |
| ! | TTCTTTCTCTTTGAAGGTGG+TGG | - | tig0006396:6344-6363 | None:intergenic | 40.0% |
| !! | GTTTGAAGGTGTCTTGAATC+TGG | - | tig0006396:6634-6653 | None:intergenic | 40.0% |
| GAAGAATTGGGATGTCATAG+TGG | + | tig0006396:6702-6721 | Msa1343400:CDS | 40.0% | |
| TAAATGGATGCCATTCTACC+CGG | - | tig0006396:6760-6779 | None:intergenic | 40.0% | |
| GAGAGGAACAAAACAAGGAG+AGG | - | tig0006396:6211-6230 | None:intergenic | 45.0% | |
| ! | TTTGAAGGTGGTGGTGATGT+TGG | - | tig0006396:6335-6354 | None:intergenic | 45.0% |
| TATCGTCGAGAAAGATGGTG+TGG | - | tig0006396:6471-6490 | None:intergenic | 45.0% | |
| GTGGTTATCGTCGAGAAAGA+TGG | - | tig0006396:6476-6495 | None:intergenic | 45.0% | |
| !! | TTCTTGTTGTTGGTCTGTCG+TGG | - | tig0006396:6495-6514 | None:intergenic | 45.0% |
| CGACAGACCAACAACAAGAA+AGG | + | tig0006396:6495-6514 | Msa1343400:CDS | 45.0% | |
| ! | AGGTGTCTTGAATCTGGTTC+TGG | - | tig0006396:6628-6647 | None:intergenic | 45.0% |
| TGGGATGTCATAGTGGTTGA+TGG | + | tig0006396:6709-6728 | Msa1343400:CDS | 45.0% | |
| ! | ACTGCTAGTGTTCTAGCTAG+AGG | + | tig0006396:6781-6800 | Msa1343400:CDS | 45.0% |
| ! | CTAGTGTTCTAGCTAGAGGT+GGG | + | tig0006396:6785-6804 | Msa1343400:CDS | 45.0% |
| GAGAGGAACAAAACAAGGAG+AGG | - | tig0006396:6211-6230 | None:intergenic | 45.0% | |
| ! | TTTGAAGGTGGTGGTGATGT+TGG | - | tig0006396:6335-6354 | None:intergenic | 45.0% |
| TATCGTCGAGAAAGATGGTG+TGG | - | tig0006396:6471-6490 | None:intergenic | 45.0% | |
| GTGGTTATCGTCGAGAAAGA+TGG | - | tig0006396:6476-6495 | None:intergenic | 45.0% | |
| !! | TTCTTGTTGTTGGTCTGTCG+TGG | - | tig0006396:6495-6514 | None:intergenic | 45.0% |
| CGACAGACCAACAACAAGAA+AGG | + | tig0006396:6495-6514 | Msa1343400:CDS | 45.0% | |
| ! | AGGTGTCTTGAATCTGGTTC+TGG | - | tig0006396:6628-6647 | None:intergenic | 45.0% |
| TGGGATGTCATAGTGGTTGA+TGG | + | tig0006396:6709-6728 | Msa1343400:CDS | 45.0% | |
| ! | ACTGCTAGTGTTCTAGCTAG+AGG | + | tig0006396:6781-6800 | Msa1343400:CDS | 45.0% |
| ! | CTAGTGTTCTAGCTAGAGGT+GGG | + | tig0006396:6785-6804 | Msa1343400:CDS | 45.0% |
| !! | ATAGTGGTTGATGGACCGAC+TGG | + | tig0006396:6718-6737 | Msa1343400:CDS | 50.0% |
| ! | GCTAGTGTTCTAGCTAGAGG+TGG | + | tig0006396:6784-6803 | Msa1343400:CDS | 50.0% |
| ! | GTTCTAGCTAGAGGTGGGAA+TGG | + | tig0006396:6790-6809 | Msa1343400:CDS | 50.0% |
| TTACACAGGGCAGAAGGTAG+TGG | - | tig0006396:6947-6966 | None:intergenic | 50.0% | |
| !! | ATAGTGGTTGATGGACCGAC+TGG | + | tig0006396:6718-6737 | Msa1343400:CDS | 50.0% |
| ! | GCTAGTGTTCTAGCTAGAGG+TGG | + | tig0006396:6784-6803 | Msa1343400:CDS | 50.0% |
| ! | GTTCTAGCTAGAGGTGGGAA+TGG | + | tig0006396:6790-6809 | Msa1343400:CDS | 50.0% |
| TTACACAGGGCAGAAGGTAG+TGG | - | tig0006396:6947-6966 | None:intergenic | 50.0% | |
| ! | GAAGGTGGTGGTGATGTTGG+AGG | - | tig0006396:6332-6351 | None:intergenic | 55.0% |
| !! | TCTGGTTCTGGTGCACATGC+TGG | - | tig0006396:6616-6635 | None:intergenic | 55.0% |
| TGCCATTCTACCCGGTGACT+CGG | - | tig0006396:6752-6771 | None:intergenic | 55.0% | |
| ! | GAAGGTGGTGGTGATGTTGG+AGG | - | tig0006396:6332-6351 | None:intergenic | 55.0% |
| !! | TCTGGTTCTGGTGCACATGC+TGG | - | tig0006396:6616-6635 | None:intergenic | 55.0% |
| TGCCATTCTACCCGGTGACT+CGG | - | tig0006396:6752-6771 | None:intergenic | 55.0% | |
| ! | GACTCGGTCGAATCGCCAGT+CGG | - | tig0006396:6736-6755 | None:intergenic | 60.0% |
| TGGCGATTCGACCGAGTCAC+CGG | + | tig0006396:6738-6757 | Msa1343400:CDS | 60.0% | |
| GACCGAGTCACCGGGTAGAA+TGG | + | tig0006396:6747-6766 | Msa1343400:CDS | 60.0% | |
| ! | GACTCGGTCGAATCGCCAGT+CGG | - | tig0006396:6736-6755 | None:intergenic | 60.0% |
| TGGCGATTCGACCGAGTCAC+CGG | + | tig0006396:6738-6757 | Msa1343400:CDS | 60.0% | |
| GACCGAGTCACCGGGTAGAA+TGG | + | tig0006396:6747-6766 | Msa1343400:CDS | 60.0% | |
| GGCGATTCGACCGAGTCACC+GGG | + | tig0006396:6739-6758 | Msa1343400:CDS | 65.0% | |
| GGCGATTCGACCGAGTCACC+GGG | + | tig0006396:6739-6758 | Msa1343400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006396 | gene | 6064 | 6966 | 6064 | ID=Msa1343400;Name=Msa1343400 |
| tig0006396 | mRNA | 6064 | 6966 | 6064 | ID=Msa1343400-mRNA-1;Parent=Msa1343400;Name=Msa1343400-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|300 |
| tig0006396 | exon | 6064 | 6966 | 6064 | ID=Msa1343400-mRNA-1:exon:4126;Parent=Msa1343400-mRNA-1 |
| tig0006396 | CDS | 6064 | 6966 | 6064 | ID=Msa1343400-mRNA-1:cds;Parent=Msa1343400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
