Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465810 | XP_003602089.1 | 97.078 | 308 | 8 | 1 | 1 | 308 | 1 | 307 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465810 | sp|Q9M643|CCI1_ARATH | 81.655 | 278 | 51 | 0 | 26 | 303 | 3 | 280 | 2.48e-171 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465810 | G7J5I6 | 97.078 | 308 | 8 | 1 | 1 | 308 | 1 | 307 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0131350 | Msa0465810 | 0.800476 | 1.415860e-48 | -8.615850e-47 |
| Msa0465810 | Msa1072960 | 0.826219 | 3.059090e-54 | -8.615850e-47 |
| Msa0465810 | Msa1160910 | 0.806143 | 9.490908e-50 | -8.615850e-47 |
| Msa0465810 | Msa1450600 | 0.825215 | 5.292754e-54 | -8.615850e-47 |
| Msa0307280 | Msa0465810 | 0.831501 | 1.610660e-55 | -8.615850e-47 |
| Msa0358280 | Msa0465810 | 0.939256 | 1.723920e-99 | -8.615850e-47 |
| Msa0358310 | Msa0465810 | 0.928157 | 4.293452e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465810 | MtrunA17_Chr3g0116181 | 97.527 | 283 | 7 | 0 | 26 | 308 | 3 | 285 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465810 | AT5G50375.1 | 81.655 | 278 | 51 | 0 | 26 | 303 | 3 | 280 | 2.52e-172 | 478 |
| Msa0465810 | AT5G50375.2 | 83.197 | 244 | 41 | 0 | 26 | 269 | 3 | 246 | 6.41e-152 | 427 |
| Msa0465810 | AT5G50375.3 | 80.660 | 212 | 41 | 0 | 92 | 303 | 1 | 212 | 4.72e-130 | 369 |
Find 77 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTATGGCGCATCTTTC+TGG | 0.013477 | 3_3:-66275249 | Msa0465810:CDS |
| GTTATGTTGGGAATTATTTC+TGG | 0.136999 | 3_3:-66277320 | Msa0465810:CDS |
| TCCTTCTCTACACTCCTTTC+TGG | 0.145961 | 3_3:-66279310 | Msa0465810:CDS |
| TGGACTATCCTTGTATTTAA+TGG | 0.184932 | 3_3:-66275032 | Msa0465810:three_prime_UTR |
| CGATCCACAAATTCATAATA+AGG | 0.203511 | 3_3:+66275557 | None:intergenic |
| ATACATTCTGATCAGAAATT+TGG | 0.235454 | 3_3:+66275001 | None:intergenic |
| ATGAGAAGCCTGGCGATAAA+TGG | 0.259830 | 3_3:-66275331 | Msa0465810:CDS |
| GAATTGGAGTATTTACTTCT+TGG | 0.280765 | 3_3:-66279140 | Msa0465810:CDS |
| TTGTGTTAACGTTAATATAT+TGG | 0.286445 | 3_3:+66274932 | None:intergenic |
| TTGACAGAAATTTACTGAAT+TGG | 0.288844 | 3_3:-66279156 | Msa0465810:intron |
| GACTTATGGCGCATCTTTCT+GGG | 0.315138 | 3_3:-66275248 | Msa0465810:CDS |
| CGTGGATAGAACTCAGAAAA+TGG | 0.317528 | 3_3:-66275137 | Msa0465810:three_prime_UTR |
| TTCTGGCTTTCTCTTTCTCT+TGG | 0.320079 | 3_3:-66279293 | Msa0465810:CDS |
| CTTTCTGGGTCCAATTGTTC+CGG | 0.326439 | 3_3:-66275234 | Msa0465810:CDS |
| TATCTTGGCAGGACCGTTAT+TGG | 0.327717 | 3_3:-66278355 | Msa0465810:CDS |
| AAGAGTGGCTGTTGATGCTC+TGG | 0.333145 | 3_3:-66275300 | Msa0465810:CDS |
| TCACAATAATACTTGACTTA+TGG | 0.346712 | 3_3:-66275262 | Msa0465810:CDS |
| TGAGCTTCCCAATGTTTCTA+AGG | 0.353587 | 3_3:-66275484 | Msa0465810:intron |
| TAGTGCTTTGATGTTGTATC+AGG | 0.366662 | 3_3:-66274961 | Msa0465810:three_prime_UTR |
| ATCTTGGCAGGACCGTTATT+GGG | 0.374611 | 3_3:-66278354 | Msa0465810:CDS |
| TGCTCTGGGTGCTGCAATGC+TGG | 0.375660 | 3_3:-66275285 | Msa0465810:CDS |
| ACATGACACTGCGTCGATTA+CGG | 0.378459 | 3_3:-66277088 | Msa0465810:CDS |
| AATTGGAGTATTTACTTCTT+GGG | 0.384997 | 3_3:-66279139 | Msa0465810:CDS |
| GCTGCCGACAGGCCAGTCTA+TGG | 0.400194 | 3_3:-66277356 | Msa0465810:intron |
| GCTTCTGAGACCGGAACAAT+TGG | 0.402278 | 3_3:+66275224 | None:intergenic |
| GTTCCCTTATTATGAATTTG+TGG | 0.419718 | 3_3:-66275561 | Msa0465810:CDS |
| AAGCTAGAAGTTGGTGAAGC+TGG | 0.422058 | 3_3:+66279377 | None:intergenic |
| AAAACCTCGTAAAGCTTGTA+TGG | 0.428880 | 3_3:+66279260 | None:intergenic |
| ATAATAATCTTCAGTTATGT+TGG | 0.432752 | 3_3:-66277333 | Msa0465810:CDS |
| CATCTTATACCTTTCCATCA+TGG | 0.442559 | 3_3:-66277269 | Msa0465810:CDS |
| CTCAGAAAATGGAGACAGTA+TGG | 0.447570 | 3_3:-66275126 | Msa0465810:three_prime_UTR |
| AAACTTACCTTAGAAACATT+GGG | 0.450083 | 3_3:+66275477 | None:intergenic |
| GCAAAACAGTGTTCTCCAAC+AGG | 0.453257 | 3_3:-66275203 | Msa0465810:CDS |
| CGAGAATCTATGTACAAAGT+TGG | 0.454985 | 3_3:-66275536 | Msa0465810:CDS |
| TAATAATCTTCAGTTATGTT+GGG | 0.455018 | 3_3:-66277332 | Msa0465810:CDS |
| GGCAAGTCCCATTTATCGCC+AGG | 0.463076 | 3_3:+66275323 | None:intergenic |
| CACCAAATCCCAGTAAAAGA+TGG | 0.463224 | 3_3:-66279346 | Msa0465810:CDS |
| AAAACTTACCTTAGAAACAT+TGG | 0.463283 | 3_3:+66275476 | None:intergenic |
| TGCAGGATTGATGAGAAGCC+TGG | 0.467133 | 3_3:-66275341 | Msa0465810:intron |
| TGAGAAGCCTGGCGATAAAT+GGG | 0.467332 | 3_3:-66275330 | Msa0465810:CDS |
| GATCCACAAATTCATAATAA+GGG | 0.475328 | 3_3:+66275558 | None:intergenic |
| TCCCATGCTGCTCGTTGGTA+AGG | 0.479641 | 3_3:-66279087 | Msa0465810:intron |
| TGGAAATAGCTAACGTCTCC+AGG | 0.481480 | 3_3:+66276982 | None:intergenic |
| CACTGCAACCATTAAATACA+AGG | 0.491608 | 3_3:+66275024 | None:intergenic |
| CTCATTCCCATGCTGCTCGT+TGG | 0.495369 | 3_3:-66279092 | Msa0465810:CDS |
| AGCATGGGAATGAGAAAAGC+AGG | 0.497308 | 3_3:+66279101 | None:intergenic |
| AGAGAAAGAGAAAGCCAGAA+AGG | 0.500890 | 3_3:+66279296 | None:intergenic |
| ACGTAATTCTCATGTGAGAT+TGG | 0.503741 | 3_3:+66275157 | None:intergenic |
| CATTTACCTTGACCCAATAA+CGG | 0.503869 | 3_3:+66278342 | None:intergenic |
| ACCTTACCAACGAGCAGCAT+GGG | 0.504398 | 3_3:+66279086 | None:intergenic |
| ACCAAATCCCAGTAAAAGAT+GGG | 0.506208 | 3_3:-66279345 | Msa0465810:CDS |
| TCAGTAAATTAGTTTATGAA+AGG | 0.507333 | 3_3:-66274886 | Msa0465810:three_prime_UTR |
| GGAAGCAAACATGAGTGAGC+AGG | 0.509168 | 3_3:+66277132 | None:intergenic |
| AGGCTGATAGAGGCATATCT+TGG | 0.518841 | 3_3:-66278370 | Msa0465810:CDS |
| AGAGTGGCTGTTGATGCTCT+GGG | 0.523207 | 3_3:-66275299 | Msa0465810:CDS |
| AGAGCATCAACAGCCACTCT+TGG | 0.534026 | 3_3:+66275302 | None:intergenic |
| TGATAGAGGCATATCTTGGC+AGG | 0.534646 | 3_3:-66278366 | Msa0465810:CDS |
| GAAGATTATTATCCATAGAC+TGG | 0.537540 | 3_3:+66277344 | None:intergenic |
| CTTCACCAACTTCTAGCTTG+TGG | 0.537828 | 3_3:-66279373 | Msa0465810:CDS |
| GCCAGAAAGGAGTGTAGAGA+AGG | 0.557819 | 3_3:+66279309 | None:intergenic |
| GGTGGGCTGCTGAAGCTGCA+TGG | 0.560758 | 3_3:-66277034 | Msa0465810:CDS |
| GCTAACCACAAGCTAGAAGT+TGG | 0.573885 | 3_3:+66279368 | None:intergenic |
| GGTATGCTATAAAATAAGCA+AGG | 0.582491 | 3_3:+66277003 | None:intergenic |
| GCAGGACCGTTATTGGGTCA+AGG | 0.582907 | 3_3:-66278348 | Msa0465810:intron |
| GAAAACCAGGGTAATCCTGT+TGG | 0.584944 | 3_3:+66275188 | None:intergenic |
| TACCTTACCAACGAGCAGCA+TGG | 0.601152 | 3_3:+66279085 | None:intergenic |
| GTTCTCCAACAGGATTACCC+TGG | 0.614928 | 3_3:-66275193 | Msa0465810:CDS |
| TCGATGCAACATGATAAAAG+AGG | 0.621052 | 3_3:+66277111 | None:intergenic |
| ATTGGCGTGTGTTGAAAACC+AGG | 0.623943 | 3_3:+66275175 | None:intergenic |
| TAAATGGGACTTGCCAAGAG+TGG | 0.629905 | 3_3:-66275315 | Msa0465810:CDS |
| GTATGCTATAAAATAAGCAA+GGG | 0.656470 | 3_3:+66277004 | None:intergenic |
| AAAATGTTGATCGTTATGTG+TGG | 0.673112 | 3_3:-66275078 | Msa0465810:three_prime_UTR |
| TGTTCCATACAAGCTTTACG+AGG | 0.674686 | 3_3:-66279264 | Msa0465810:intron |
| CCAAATCCCAGTAAAAGATG+GGG | 0.679597 | 3_3:-66279344 | Msa0465810:CDS |
| AATCTCACATGAGAATTACG+TGG | 0.705172 | 3_3:-66275155 | Msa0465810:exon |
| TTGGCGTGTGTTGAAAACCA+GGG | 0.733461 | 3_3:+66275176 | None:intergenic |
| GTGAGCAGGAATGTTGTGTG+TGG | 0.771197 | 3_3:+66277146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAAAAAATAATTTTCTT+AGG | - | chr3_3:66276104-66276123 | Msa0465810:intron | 10.0% |
| !! | ATTAAATAAATATGTATATG+TGG | + | chr3_3:66276849-66276868 | None:intergenic | 10.0% |
| !!! | AATAGTGAAATTTATTTTTT+TGG | - | chr3_3:66279405-66279424 | Msa0465810:CDS | 10.0% |
| !!! | CTTTTTTATCAAAATAAATA+CGG | - | chr3_3:66279447-66279466 | Msa0465810:CDS | 10.0% |
| !!! | TTTTTTATCAAAATAAATAC+GGG | - | chr3_3:66279448-66279467 | Msa0465810:CDS | 10.0% |
| !!! | GATTGACTTATTTAAATTTA+GGG | + | chr3_3:66275379-66275398 | None:intergenic | 15.0% |
| !!! | TTTTTTGGATATTATGATAA+AGG | - | chr3_3:66276766-66276785 | Msa0465810:intron | 15.0% |
| !! | ACATATTTATTTAATTCTGT+TGG | - | chr3_3:66276854-66276873 | Msa0465810:intron | 15.0% |
| !! | TTATTATTATGATCTTTGTT+TGG | - | chr3_3:66277337-66277356 | Msa0465810:CDS | 15.0% |
| !! | GTAAATTATTTGAATTGTTA+TGG | - | chr3_3:66277718-66277737 | Msa0465810:intron | 15.0% |
| !!! | TGTTGATTGTAATATTTTTT+AGG | - | chr3_3:66277911-66277930 | Msa0465810:intron | 15.0% |
| !! | TTGCCAAAAAATATAAAAAA+GGG | + | chr3_3:66278118-66278137 | None:intergenic | 15.0% |
| !! | TTTGCCAAAAAATATAAAAA+AGG | + | chr3_3:66278119-66278138 | None:intergenic | 15.0% |
| !! | ATAATGTTATTGTTATGTAT+TGG | - | chr3_3:66278671-66278690 | Msa0465810:intron | 15.0% |
| !!! | GGATTGACTTATTTAAATTT+AGG | + | chr3_3:66275380-66275399 | None:intergenic | 20.0% |
| !! | GATATTCATACTTATTAACA+AGG | - | chr3_3:66275747-66275766 | Msa0465810:intron | 20.0% |
| !!! | GAAGAAGATAAACTATTTTT+TGG | + | chr3_3:66275803-66275822 | None:intergenic | 20.0% |
| !!! | AATCATATATCAAATTTTGC+AGG | - | chr3_3:66275874-66275893 | Msa0465810:intron | 20.0% |
| !! | AATACAGCAATGTAAATATT+TGG | + | chr3_3:66275968-66275987 | None:intergenic | 20.0% |
| !!! | AATAATTTTCTTAGGCATAA+TGG | - | chr3_3:66276112-66276131 | Msa0465810:intron | 20.0% |
| !! | ATAAGGAAAATAGAATTTGA+GGG | + | chr3_3:66276227-66276246 | None:intergenic | 20.0% |
| !! | AATAAGGAAAATAGAATTTG+AGG | + | chr3_3:66276228-66276247 | None:intergenic | 20.0% |
| !! | TACTTTGCACTTTATTATTA+GGG | + | chr3_3:66276378-66276397 | None:intergenic | 20.0% |
| !! | ATACTTTGCACTTTATTATT+AGG | + | chr3_3:66276379-66276398 | None:intergenic | 20.0% |
| !! | AAGAAACTAAACATAACAAA+AGG | - | chr3_3:66276437-66276456 | Msa0465810:intron | 20.0% |
| !!! | CTAAGTAGTAAAATCATTTT+TGG | + | chr3_3:66276729-66276748 | None:intergenic | 20.0% |
| !! | ATAATAATCTTCAGTTATGT+TGG | - | chr3_3:66276931-66276950 | Msa0465810:intron | 20.0% |
| !! | TAATAATCTTCAGTTATGTT+GGG | - | chr3_3:66276932-66276951 | Msa0465810:intron | 20.0% |
| !! | AATAATAAAAACCAGTAGAA+TGG | + | chr3_3:66277325-66277344 | None:intergenic | 20.0% |
| !!! | TGCATTTTTGGATATATTTA+TGG | - | chr3_3:66277363-66277382 | Msa0465810:intron | 20.0% |
| !! | CAATTCAAATAATTTACGAA+GGG | + | chr3_3:66277715-66277734 | None:intergenic | 20.0% |
| !! | ACAATTCAAATAATTTACGA+AGG | + | chr3_3:66277716-66277735 | None:intergenic | 20.0% |
| !! | TGCCAAAAAATATAAAAAAG+GGG | + | chr3_3:66278117-66278136 | None:intergenic | 20.0% |
| !! | ACAAGAAAATATATGAAGAT+AGG | + | chr3_3:66278305-66278324 | None:intergenic | 20.0% |
| !! | AATTTCTCAAATAGAAGAAA+TGG | + | chr3_3:66278532-66278551 | None:intergenic | 20.0% |
| !! | TTGTGTTAACGTTAATATAT+TGG | + | chr3_3:66279335-66279354 | None:intergenic | 20.0% |
| !!! | TCAGTAAATTAGTTTATGAA+AGG | - | chr3_3:66279378-66279397 | Msa0465810:CDS | 20.0% |
| !!! | TCTATTTTGTGTTTCTGTAT+TGG | - | chr3_3:66274847-66274866 | Msa0465810:three_prime_UTR | 25.0% |
| ! | TTGAAAAAGAATAGAGGTAA+AGG | + | chr3_3:66275033-66275052 | None:intergenic | 25.0% |
| ! | ACATGATTGAAAAAGAATAG+AGG | + | chr3_3:66275039-66275058 | None:intergenic | 25.0% |
| ! | TTGACAGAAATTTACTGAAT+TGG | - | chr3_3:66275108-66275127 | Msa0465810:three_prime_UTR | 25.0% |
| !! | AATTGGAGTATTTACTTCTT+GGG | - | chr3_3:66275125-66275144 | Msa0465810:three_prime_UTR | 25.0% |
| !! | ATTTAAATTTAGGGTCTGTT+TGG | + | chr3_3:66275401-66275420 | None:intergenic | 25.0% |
| ! | TTACAAATAAGTATTCAGCA+GGG | + | chr3_3:66275441-66275460 | None:intergenic | 25.0% |
| !! | ACTGTTTTCATAAGCTATTT+TGG | - | chr3_3:66275515-66275534 | Msa0465810:CDS | 25.0% |
| ! | CACAAACTTAATGCAAAAAA+TGG | + | chr3_3:66275615-66275634 | None:intergenic | 25.0% |
| !! | ATTTATGCTATGGCAATTTT+TGG | - | chr3_3:66275654-66275673 | Msa0465810:intron | 25.0% |
| ! | TGAATATCAGCATAAAAAGT+GGG | + | chr3_3:66275735-66275754 | None:intergenic | 25.0% |
| ! | ATGAATATCAGCATAAAAAG+TGG | + | chr3_3:66275736-66275755 | None:intergenic | 25.0% |
| ! | TAAAAAACTGCATAACTCAT+CGG | + | chr3_3:66275774-66275793 | None:intergenic | 25.0% |
| !!! | GTCAAGGTAAATGTTTTTAT+AGG | - | chr3_3:66275932-66275951 | Msa0465810:intron | 25.0% |
| ! | TGTCATTGAATCATAAATGA+AGG | + | chr3_3:66276006-66276025 | None:intergenic | 25.0% |
| ! | CATTTATGATTCAATGACAT+TGG | - | chr3_3:66276007-66276026 | Msa0465810:intron | 25.0% |
| ! | TGCATTAACATGATTGAAAA+GGG | + | chr3_3:66276418-66276437 | None:intergenic | 25.0% |
| ! | TTGCATTAACATGATTGAAA+AGG | + | chr3_3:66276419-66276438 | None:intergenic | 25.0% |
| ! | TAAATCTGAATGTAGATGAA+AGG | + | chr3_3:66276694-66276713 | None:intergenic | 25.0% |
| !!! | GTGTTATTGTTGCTATTTTT+TGG | - | chr3_3:66276751-66276770 | Msa0465810:intron | 25.0% |
| ! | TGGATATTATGATAAAGGAA+TGG | - | chr3_3:66276771-66276790 | Msa0465810:intron | 25.0% |
| ! | AGCACAATAAATCCATAATT+AGG | + | chr3_3:66276823-66276842 | None:intergenic | 25.0% |
| ! | GTATGCTATAAAATAAGCAA+GGG | + | chr3_3:66277263-66277282 | None:intergenic | 25.0% |
| !!! | CTATTGTTATTTTCGTAGTT+AGG | - | chr3_3:66277599-66277618 | Msa0465810:intron | 25.0% |
| ! | ATAAAACAAAGTTGCAGAAA+GGG | + | chr3_3:66277630-66277649 | None:intergenic | 25.0% |
| ! | AGGCTGATATATGAAAATTA+TGG | + | chr3_3:66277939-66277958 | None:intergenic | 25.0% |
| !!! | ACATGTGTAAAGACATTTTT+TGG | - | chr3_3:66277977-66277996 | Msa0465810:intron | 25.0% |
| !!! | TCAGTATTTAGCTTTTACAT+TGG | - | chr3_3:66278044-66278063 | Msa0465810:intron | 25.0% |
| !!! | TCCCCCTTTTTTATATTTTT+TGG | - | chr3_3:66278112-66278131 | Msa0465810:intron | 25.0% |
| ! | GCCAAAAAATATAAAAAAGG+GGG | + | chr3_3:66278116-66278135 | None:intergenic | 25.0% |
| ! | TAAATACGTCAAAGAATTAG+AGG | + | chr3_3:66278185-66278204 | None:intergenic | 25.0% |
| ! | GGTTCAATCAAAAGAAAAAA+GGG | + | chr3_3:66278231-66278250 | None:intergenic | 25.0% |
| ! | AGGTTCAATCAAAAGAAAAA+AGG | + | chr3_3:66278232-66278251 | None:intergenic | 25.0% |
| ! | ATATCAAAATATCCACTTGA+AGG | + | chr3_3:66278256-66278275 | None:intergenic | 25.0% |
| !!! | GCTTAAAATTTGATTTTGCT+AGG | - | chr3_3:66278409-66278428 | Msa0465810:intron | 25.0% |
| !! | AATTTTCTCAATCACTCTTT+TGG | - | chr3_3:66278548-66278567 | Msa0465810:intron | 25.0% |
| ! | TTACCAAACTAACAAATTGT+TGG | + | chr3_3:66278574-66278593 | None:intergenic | 25.0% |
| ! | AAACGTACATTACATATTGA+AGG | + | chr3_3:66278645-66278664 | None:intergenic | 25.0% |
| ! | GATCCACAAATTCATAATAA+GGG | + | chr3_3:66278709-66278728 | None:intergenic | 25.0% |
| ! | AAACTTACCTTAGAAACATT+GGG | + | chr3_3:66278790-66278809 | None:intergenic | 25.0% |
| ! | AAAACTTACCTTAGAAACAT+TGG | + | chr3_3:66278791-66278810 | None:intergenic | 25.0% |
| ! | CATTGTACTAATCTTATTGA+TGG | - | chr3_3:66278885-66278904 | Msa0465810:intron | 25.0% |
| ! | TCACAATAATACTTGACTTA+TGG | - | chr3_3:66279002-66279021 | Msa0465810:intron | 25.0% |
| !!! | TCAACATTTTTGGATTGTTT+TGG | + | chr3_3:66279176-66279195 | None:intergenic | 25.0% |
| ! | ATACATTCTGATCAGAAATT+TGG | + | chr3_3:66279266-66279285 | None:intergenic | 25.0% |
| ! | TTGATAAAAAAGAACTGATC+TGG | + | chr3_3:66279439-66279458 | None:intergenic | 25.0% |
| ! | GAATTGGAGTATTTACTTCT+TGG | - | chr3_3:66275124-66275143 | Msa0465810:three_prime_UTR | 30.0% |
| CTTACAAATAAGTATTCAGC+AGG | + | chr3_3:66275442-66275461 | None:intergenic | 30.0% | |
| ACCCTATTACATTTATGCTA+TGG | - | chr3_3:66275644-66275663 | Msa0465810:intron | 30.0% | |
| GCCATAGCATAAATGTAATA+GGG | + | chr3_3:66275648-66275667 | None:intergenic | 30.0% | |
| TGCCATAGCATAAATGTAAT+AGG | + | chr3_3:66275649-66275668 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTATTACCAAGAC+TGG | - | chr3_3:66276236-66276255 | Msa0465810:intron | 30.0% |
| CACGGTTTCAAATACTTTAA+TGG | + | chr3_3:66276262-66276281 | None:intergenic | 30.0% | |
| GTGCACATTTGACATTATAT+TGG | - | chr3_3:66276295-66276314 | Msa0465810:intron | 30.0% | |
| CATTAACATGATTGAAAAGG+GGG | + | chr3_3:66276416-66276435 | None:intergenic | 30.0% | |
| GCATTAACATGATTGAAAAG+GGG | + | chr3_3:66276417-66276436 | None:intergenic | 30.0% | |
| ATAAACTCACGCAATTCATA+TGG | + | chr3_3:66276468-66276487 | None:intergenic | 30.0% | |
| ! | TATTTTTCATGTCTTGATCG+AGG | - | chr3_3:66276649-66276668 | Msa0465810:intron | 30.0% |
| ! | ATTTTTCATGTCTTGATCGA+GGG | - | chr3_3:66276650-66276669 | Msa0465810:intron | 30.0% |
| CTACTTTAGACTCCTAATTA+TGG | - | chr3_3:66276808-66276827 | Msa0465810:intron | 30.0% | |
| AGCAAATACATGTACATGTT+AGG | + | chr3_3:66276891-66276910 | None:intergenic | 30.0% | |
| GAAGATTATTATCCATAGAC+TGG | + | chr3_3:66276923-66276942 | None:intergenic | 30.0% | |
| GTTATGTTGGGAATTATTTC+TGG | - | chr3_3:66276944-66276963 | Msa0465810:intron | 30.0% | |
| !!! | TCATTACTTTTTCACAGTTC+TGG | - | chr3_3:66276969-66276988 | Msa0465810:intron | 30.0% |
| !!! | CATTACTTTTTCACAGTTCT+GGG | - | chr3_3:66276970-66276989 | Msa0465810:intron | 30.0% |
| ! | ACATTGTTCATTTTCCATGA+TGG | + | chr3_3:66277012-66277031 | None:intergenic | 30.0% |
| !! | CATTGATTTGCTCTATTTGT+TGG | - | chr3_3:66277086-66277105 | Msa0465810:CDS | 30.0% |
| CTGATACACCAGAAAAAATT+CGG | - | chr3_3:66277209-66277228 | Msa0465810:intron | 30.0% | |
| GGTATGCTATAAAATAAGCA+AGG | + | chr3_3:66277264-66277283 | None:intergenic | 30.0% | |
| !!! | TGCTTATTTTATAGCATACC+TGG | - | chr3_3:66277264-66277283 | Msa0465810:CDS | 30.0% |
| ! | TTAGCTATTTCCAATGTATG+TGG | - | chr3_3:66277292-66277311 | Msa0465810:CDS | 30.0% |
| ! | TTTGTTTGGTCATGCATTTT+TGG | - | chr3_3:66277351-66277370 | Msa0465810:intron | 30.0% |
| ! | TGCAATCTTTTCTTCTTGAA+TGG | - | chr3_3:66277388-66277407 | Msa0465810:intron | 30.0% |
| CAATGCATTTGTACATTTCA+AGG | - | chr3_3:66277552-66277571 | Msa0465810:intron | 30.0% | |
| CATAAAACAAAGTTGCAGAA+AGG | + | chr3_3:66277631-66277650 | None:intergenic | 30.0% | |
| AATAGCCAAATCAATGTGTA+TGG | + | chr3_3:66278006-66278025 | None:intergenic | 30.0% | |
| TGAAGATAGGAAATTTCTGA+AGG | + | chr3_3:66278292-66278311 | None:intergenic | 30.0% | |
| TACTTAATTCTAGATGCTCA+AGG | - | chr3_3:66278446-66278465 | Msa0465810:intron | 30.0% | |
| !!! | TGGTTAGTTTTTTCTTTGCA+TGG | - | chr3_3:66278474-66278493 | Msa0465810:intron | 30.0% |
| !!! | CATGGATTATTTTTATCCCT+TGG | - | chr3_3:66278492-66278511 | Msa0465810:intron | 30.0% |
| CATTACATATTGAAGGTCAA+AGG | + | chr3_3:66278638-66278657 | None:intergenic | 30.0% | |
| GTTCCCTTATTATGAATTTG+TGG | - | chr3_3:66278703-66278722 | Msa0465810:intron | 30.0% | |
| CGATCCACAAATTCATAATA+AGG | + | chr3_3:66278710-66278729 | None:intergenic | 30.0% | |
| ! | CACATAACGATCAACATTTT+TGG | + | chr3_3:66279186-66279205 | None:intergenic | 30.0% |
| AAAATGTTGATCGTTATGTG+TGG | - | chr3_3:66279186-66279205 | Msa0465810:intron | 30.0% | |
| ATCTGCAGAAAAAACTAACT+TGG | - | chr3_3:66279212-66279231 | Msa0465810:intron | 30.0% | |
| TGGACTATCCTTGTATTTAA+TGG | - | chr3_3:66279232-66279251 | Msa0465810:intron | 30.0% | |
| ACCAAATCCCAGTAAAAGAT+GGG | - | chr3_3:66274919-66274938 | Msa0465810:three_prime_UTR | 35.0% | |
| AAAACCTCGTAAAGCTTGTA+TGG | + | chr3_3:66275007-66275026 | None:intergenic | 35.0% | |
| AGTAAGACAGTGTTACATTC+TGG | + | chr3_3:66275084-66275103 | None:intergenic | 35.0% | |
| AGTCTCACAAAACTTATGTC+AGG | - | chr3_3:66275353-66275372 | Msa0465810:intron | 35.0% | |
| CTCAAATAAACTAACCCTGA+TGG | - | chr3_3:66275589-66275608 | Msa0465810:intron | 35.0% | |
| AATGCAAAAAATGGCCATCA+GGG | + | chr3_3:66275606-66275625 | None:intergenic | 35.0% | |
| TAATGCAAAAAATGGCCATC+AGG | + | chr3_3:66275607-66275626 | None:intergenic | 35.0% | |
| AGAATCGACATTCAAGTACT+GGG | + | chr3_3:66275702-66275721 | None:intergenic | 35.0% | |
| AAGAATCGACATTCAAGTAC+TGG | + | chr3_3:66275703-66275722 | None:intergenic | 35.0% | |
| !! | TACTTGAATGTCGATTCTTC+TGG | - | chr3_3:66275704-66275723 | Msa0465810:intron | 35.0% |
| !! | ACTTGAATGTCGATTCTTCT+GGG | - | chr3_3:66275705-66275724 | Msa0465810:intron | 35.0% |
| CATTTACCTTGACCCAATAA+CGG | + | chr3_3:66275925-66275944 | None:intergenic | 35.0% | |
| AATACTTTAATGGCCAGTCT+TGG | + | chr3_3:66276252-66276271 | None:intergenic | 35.0% | |
| !! | GGTGTTATTCGTCTTGTATT+TGG | - | chr3_3:66276316-66276335 | Msa0465810:intron | 35.0% |
| AAGTCAAGATCCAAAACAGA+AGG | - | chr3_3:66276568-66276587 | Msa0465810:intron | 35.0% | |
| AGTCAAGATCCAAAACAGAA+GGG | - | chr3_3:66276569-66276588 | Msa0465810:intron | 35.0% | |
| CATCTTATACCTTTCCATCA+TGG | - | chr3_3:66276995-66277014 | Msa0465810:CDS | 35.0% | |
| !! | GTTCATTTTCCATGATGGAA+AGG | + | chr3_3:66277007-66277026 | None:intergenic | 35.0% |
| AAAATGAACAATGTAAGCCG+AGG | - | chr3_3:66277018-66277037 | Msa0465810:CDS | 35.0% | |
| GAGACTAAGAGGTAACTAAT+AGG | + | chr3_3:66277045-66277064 | None:intergenic | 35.0% | |
| !! | TGATTTGCTCTATTTGTTGG+TGG | - | chr3_3:66277089-66277108 | Msa0465810:CDS | 35.0% |
| TCGATGCAACATGATAAAAG+AGG | + | chr3_3:66277156-66277175 | None:intergenic | 35.0% | |
| ATACACCAGAAAAAATTCGG+TGG | - | chr3_3:66277212-66277231 | Msa0465810:intron | 35.0% | |
| TACACCAGAAAAAATTCGGT+GGG | - | chr3_3:66277213-66277232 | Msa0465810:intron | 35.0% | |
| !! | TGGTTTGTTACCACATACAT+TGG | + | chr3_3:66277305-66277324 | None:intergenic | 35.0% |
| ! | TTTTCTTCTTGAATGGCTCA+TGG | - | chr3_3:66277395-66277414 | Msa0465810:intron | 35.0% |
| ! | CATTGAAGCTCAGATTTTCT+GGG | + | chr3_3:66277537-66277556 | None:intergenic | 35.0% |
| TAATTTACGAAGGGAAACCA+GGG | + | chr3_3:66277706-66277725 | None:intergenic | 35.0% | |
| ATAATTTACGAAGGGAAACC+AGG | + | chr3_3:66277707-66277726 | None:intergenic | 35.0% | |
| GTCTAAACTCAAATGAGTGT+AGG | + | chr3_3:66277959-66277978 | None:intergenic | 35.0% | |
| ! | GGAATCCATACACATTGATT+TGG | - | chr3_3:66277998-66278017 | Msa0465810:intron | 35.0% |
| GATTTGGCTATTCTAGATTG+AGG | - | chr3_3:66278014-66278033 | Msa0465810:intron | 35.0% | |
| AAAGGGAGAAATGTCTAAGA+TGG | + | chr3_3:66278214-66278233 | None:intergenic | 35.0% | |
| CAAAATATCCACTTGAAGGT+AGG | + | chr3_3:66278252-66278271 | None:intergenic | 35.0% | |
| !! | CAGAAGTACCTTTATGCTTA+AGG | - | chr3_3:66278381-66278400 | Msa0465810:intron | 35.0% |
| AGCATCAACCTTAAGCATAA+AGG | + | chr3_3:66278392-66278411 | None:intergenic | 35.0% | |
| TCTAGATGCTCAAGGTTAAT+TGG | - | chr3_3:66278454-66278473 | Msa0465810:intron | 35.0% | |
| !! | TGGCCAACAATTTGTTAGTT+TGG | - | chr3_3:66278568-66278587 | Msa0465810:intron | 35.0% |
| CGAGAATCTATGTACAAAGT+TGG | - | chr3_3:66278728-66278747 | Msa0465810:intron | 35.0% | |
| GTATGCAACTACTAGAAACA+CGG | + | chr3_3:66278841-66278860 | None:intergenic | 35.0% | |
| GGTTATTCATGTGAATATGC+AGG | - | chr3_3:66278906-66278925 | Msa0465810:intron | 35.0% | |
| ACGTAATTCTCATGTGAGAT+TGG | + | chr3_3:66279110-66279129 | None:intergenic | 35.0% | |
| AATCTCACATGAGAATTACG+TGG | - | chr3_3:66279109-66279128 | Msa0465810:CDS | 35.0% | |
| CACTGCAACCATTAAATACA+AGG | + | chr3_3:66279243-66279262 | None:intergenic | 35.0% | |
| TAGTGCTTTGATGTTGTATC+AGG | - | chr3_3:66279303-66279322 | Msa0465810:CDS | 35.0% | |
| CACCAAATCCCAGTAAAAGA+TGG | - | chr3_3:66274918-66274937 | Msa0465810:three_prime_UTR | 40.0% | |
| CCAAATCCCAGTAAAAGATG+GGG | - | chr3_3:66274920-66274939 | Msa0465810:three_prime_UTR | 40.0% | |
| AGAGAAAGAGAAAGCCAGAA+AGG | + | chr3_3:66274971-66274990 | None:intergenic | 40.0% | |
| !! | TTCTGGCTTTCTCTTTCTCT+TGG | - | chr3_3:66274971-66274990 | Msa0465810:three_prime_UTR | 40.0% |
| TGTTCCATACAAGCTTTACG+AGG | - | chr3_3:66275000-66275019 | Msa0465810:three_prime_UTR | 40.0% | |
| ! | CAAATTTTGCAGGCTGATAG+AGG | - | chr3_3:66275884-66275903 | Msa0465810:intron | 40.0% |
| ATTGCTGTATTGCATTGCAG+TGG | - | chr3_3:66275977-66275996 | Msa0465810:intron | 40.0% | |
| TTGCTGTATTGCATTGCAGT+GGG | - | chr3_3:66275978-66275997 | Msa0465810:intron | 40.0% | |
| ! | ATAATGGAACAAGCCCTTAC+TGG | - | chr3_3:66276128-66276147 | Msa0465810:intron | 40.0% |
| ! | AATGGCCAGTCTTGGTAATA+AGG | + | chr3_3:66276244-66276263 | None:intergenic | 40.0% |
| TTGAAACCGTGACAAACAAG+TGG | - | chr3_3:66276271-66276290 | Msa0465810:intron | 40.0% | |
| ACTCACGCAATTCATATGGT+CGG | + | chr3_3:66276464-66276483 | None:intergenic | 40.0% | |
| TGCGTGAGTTTATCCATTTG+AGG | - | chr3_3:66276475-66276494 | Msa0465810:intron | 40.0% | |
| ! | TCCATTTGAGGCATTCTTGA+TGG | - | chr3_3:66276487-66276506 | Msa0465810:intron | 40.0% |
| TCCATCAAGAATGCCTCAAA+TGG | + | chr3_3:66276491-66276510 | None:intergenic | 40.0% | |
| CAAAATGATTCTTCCCAGTC+AGG | - | chr3_3:66276514-66276533 | Msa0465810:intron | 40.0% | |
| TTGAAGAGTAAGACACCAGA+AGG | + | chr3_3:66276550-66276569 | None:intergenic | 40.0% | |
| TAACCCCTCCAACTAGAAAA+GGG | - | chr3_3:66276602-66276621 | Msa0465810:intron | 40.0% | |
| !!! | TATCCCCTTTTCTAGTTGGA+GGG | + | chr3_3:66276609-66276628 | None:intergenic | 40.0% |
| !!! | ATATCCCCTTTTCTAGTTGG+AGG | + | chr3_3:66276610-66276629 | None:intergenic | 40.0% |
| !! | GTCATATCCCCTTTTCTAGT+TGG | + | chr3_3:66276613-66276632 | None:intergenic | 40.0% |
| ! | CATGTACATGTTAGGTTGTG+AGG | + | chr3_3:66276883-66276902 | None:intergenic | 40.0% |
| AGAGGTAACTAATAGGTCCT+CGG | + | chr3_3:66277038-66277057 | None:intergenic | 40.0% | |
| GTGGTAACAAACCATTCTAC+TGG | - | chr3_3:66277311-66277330 | Msa0465810:CDS | 40.0% | |
| !! | GACTGCAATCGATAGTTTTG+AGG | - | chr3_3:66277417-66277436 | Msa0465810:intron | 40.0% |
| ! | GCATTGAAGCTCAGATTTTC+TGG | + | chr3_3:66277538-66277557 | None:intergenic | 40.0% |
| TGATTGAACCTACCTTCAAG+TGG | - | chr3_3:66278241-66278260 | Msa0465810:intron | 40.0% | |
| ! | GGAGAAAGTACATCATCCAA+GGG | + | chr3_3:66278511-66278530 | None:intergenic | 40.0% |
| ! | TGGAGAAAGTACATCATCCA+AGG | + | chr3_3:66278512-66278531 | None:intergenic | 40.0% |
| ! | TGAGCTTCCCAATGTTTCTA+AGG | - | chr3_3:66278780-66278799 | Msa0465810:intron | 40.0% |
| AGTTGCATACACGAGAAACA+CGG | - | chr3_3:66278851-66278870 | Msa0465810:intron | 40.0% | |
| CGTGGATAGAACTCAGAAAA+TGG | - | chr3_3:66279127-66279146 | Msa0465810:CDS | 40.0% | |
| CTCAGAAAATGGAGACAGTA+TGG | - | chr3_3:66279138-66279157 | Msa0465810:CDS | 40.0% | |
| !!! | TGGATTGTTTTGGTGTGTAG+CGG | + | chr3_3:66279166-66279185 | None:intergenic | 40.0% |
| !! | AAGCTAGAAGTTGGTGAAGC+TGG | + | chr3_3:66274890-66274909 | None:intergenic | 45.0% |
| !! | CTTCACCAACTTCTAGCTTG+TGG | - | chr3_3:66274891-66274910 | Msa0465810:three_prime_UTR | 45.0% |
| GCTAACCACAAGCTAGAAGT+TGG | + | chr3_3:66274899-66274918 | None:intergenic | 45.0% | |
| ! | CCCCATCTTTTACTGGGATT+TGG | + | chr3_3:66274923-66274942 | None:intergenic | 45.0% |
| ! | AGTTCGCCCCATCTTTTACT+GGG | + | chr3_3:66274929-66274948 | None:intergenic | 45.0% |
| TCCTTCTCTACACTCCTTTC+TGG | - | chr3_3:66274954-66274973 | Msa0465810:three_prime_UTR | 45.0% | |
| AGCATGGGAATGAGAAAAGC+AGG | + | chr3_3:66275166-66275185 | None:intergenic | 45.0% | |
| AGTATTCAGCAGGGTCTGTT+TGG | + | chr3_3:66275432-66275451 | None:intergenic | 45.0% | |
| !! | CATTCAAGTACTGGGTGTTG+AGG | + | chr3_3:66275694-66275713 | None:intergenic | 45.0% |
| TCCTACTGATCTTGTCAGTG+TGG | - | chr3_3:66275826-66275845 | Msa0465810:intron | 45.0% | |
| CCTACTGATCTTGTCAGTGT+GGG | - | chr3_3:66275827-66275846 | Msa0465810:intron | 45.0% | |
| ! | AGGCTGATAGAGGCATATCT+TGG | - | chr3_3:66275894-66275913 | Msa0465810:intron | 45.0% |
| ! | TGATAGAGGCATATCTTGGC+AGG | - | chr3_3:66275898-66275917 | Msa0465810:intron | 45.0% |
| TATCTTGGCAGGACCGTTAT+TGG | - | chr3_3:66275909-66275928 | Msa0465810:intron | 45.0% | |
| ATCTTGGCAGGACCGTTATT+GGG | - | chr3_3:66275910-66275929 | Msa0465810:intron | 45.0% | |
| !! | TTGTCGACTAGTCTGAGACT+AGG | + | chr3_3:66276180-66276199 | None:intergenic | 45.0% |
| ! | TAGTCTCAGACTAGTCGACA+AGG | - | chr3_3:66276179-66276198 | Msa0465810:intron | 45.0% |
| ! | AGTCTCAGACTAGTCGACAA+GGG | - | chr3_3:66276180-66276199 | Msa0465810:intron | 45.0% |
| TGCACACCACTTGTTTGTCA+CGG | + | chr3_3:66276280-66276299 | None:intergenic | 45.0% | |
| CTCACGCAATTCATATGGTC+GGG | + | chr3_3:66276463-66276482 | None:intergenic | 45.0% | |
| GTAAGACACCAGAAGGTAAG+AGG | + | chr3_3:66276543-66276562 | None:intergenic | 45.0% | |
| ! | CTTGAGCTTCCCTTCTGTTT+TGG | + | chr3_3:66276581-66276600 | None:intergenic | 45.0% |
| CTAACCCCTCCAACTAGAAA+AGG | - | chr3_3:66276601-66276620 | Msa0465810:intron | 45.0% | |
| AACCCCTCCAACTAGAAAAG+GGG | - | chr3_3:66276603-66276622 | Msa0465810:intron | 45.0% | |
| !!! | ATCCCCTTTTCTAGTTGGAG+GGG | + | chr3_3:66276608-66276627 | None:intergenic | 45.0% |
| ! | TACATGTATTTGCTGCCGAC+AGG | - | chr3_3:66276897-66276916 | Msa0465810:intron | 45.0% |
| !! | TTATCCATAGACTGGCCTGT+CGG | + | chr3_3:66276915-66276934 | None:intergenic | 45.0% |
| TACCTCTTAGTCTCGTAGTG+AGG | - | chr3_3:66277051-66277070 | Msa0465810:CDS | 45.0% | |
| !! | TTGCTCTATTTGTTGGTGGC+AGG | - | chr3_3:66277093-66277112 | Msa0465810:CDS | 45.0% |
| !! | ACATGACACTGCGTCGATTA+CGG | - | chr3_3:66277176-66277195 | Msa0465810:intron | 45.0% |
| TGGAAATAGCTAACGTCTCC+AGG | + | chr3_3:66277285-66277304 | None:intergenic | 45.0% | |
| !! | GATTTTCTGGGCTAGGCTTT+GGG | + | chr3_3:66277525-66277544 | None:intergenic | 45.0% |
| !! | AGATTTTCTGGGCTAGGCTT+TGG | + | chr3_3:66277526-66277545 | None:intergenic | 45.0% |
| ! | AAGCTCAGATTTTCTGGGCT+AGG | + | chr3_3:66277532-66277551 | None:intergenic | 45.0% |
| TCCTATCTTCAAGTCTACCC+TGG | - | chr3_3:66277686-66277705 | Msa0465810:intron | 45.0% | |
| ACCAGGGTAGACTTGAAGAT+AGG | + | chr3_3:66277690-66277709 | None:intergenic | 45.0% | |
| ! | CTCCTGCTTCTTTTGTGCTA+TGG | - | chr3_3:66278157-66278176 | Msa0465810:intron | 45.0% |
| CTCCATAGCACAAAAGAAGC+AGG | + | chr3_3:66278162-66278181 | None:intergenic | 45.0% | |
| ATGAGAAGCCTGGCGATAAA+TGG | - | chr3_3:66278933-66278952 | Msa0465810:intron | 45.0% | |
| TGAGAAGCCTGGCGATAAAT+GGG | - | chr3_3:66278934-66278953 | Msa0465810:intron | 45.0% | |
| TAAATGGGACTTGCCAAGAG+TGG | - | chr3_3:66278949-66278968 | Msa0465810:intron | 45.0% | |
| TGACTTATGGCGCATCTTTC+TGG | - | chr3_3:66279015-66279034 | Msa0465810:intron | 45.0% | |
| GACTTATGGCGCATCTTTCT+GGG | - | chr3_3:66279016-66279035 | Msa0465810:intron | 45.0% | |
| CTTTCTGGGTCCAATTGTTC+CGG | - | chr3_3:66279030-66279049 | Msa0465810:intron | 45.0% | |
| !!! | CACTGTTTTGCTTCTGAGAC+CGG | + | chr3_3:66279052-66279071 | None:intergenic | 45.0% |
| GCAAAACAGTGTTCTCCAAC+AGG | - | chr3_3:66279061-66279080 | Msa0465810:intron | 45.0% | |
| GAAAACCAGGGTAATCCTGT+TGG | + | chr3_3:66279079-66279098 | None:intergenic | 45.0% | |
| TTGGCGTGTGTTGAAAACCA+GGG | + | chr3_3:66279091-66279110 | None:intergenic | 45.0% | |
| ATTGGCGTGTGTTGAAAACC+AGG | + | chr3_3:66279092-66279111 | None:intergenic | 45.0% | |
| !! | TATGATTATTTAATATTTAT+TGG | - | chr3_3:66276075-66276094 | Msa0465810:intron | 5.0% |
| ! | GAGTTCGCCCCATCTTTTAC+TGG | + | chr3_3:66274930-66274949 | None:intergenic | 50.0% |
| ! | GCCAGAAAGGAGTGTAGAGA+AGG | + | chr3_3:66274958-66274977 | None:intergenic | 50.0% |
| ACCTTACCAACGAGCAGCAT+GGG | + | chr3_3:66275181-66275200 | None:intergenic | 50.0% | |
| TACCTTACCAACGAGCAGCA+TGG | + | chr3_3:66275182-66275201 | None:intergenic | 50.0% | |
| !! | GAATGTCGATTCTTCTGGGC+TGG | - | chr3_3:66275709-66275728 | Msa0465810:intron | 50.0% |
| CCCACACTGACAAGATCAGT+AGG | + | chr3_3:66275830-66275849 | None:intergenic | 50.0% | |
| ! | TTGTCAGTGTGGGCTGAGAA+TGG | - | chr3_3:66275837-66275856 | Msa0465810:intron | 50.0% |
| !! | GACTAGTCTGAGACTAGGAG+AGG | + | chr3_3:66276175-66276194 | None:intergenic | 50.0% |
| ! | GTCTCAGACTAGTCGACAAG+GGG | - | chr3_3:66276181-66276200 | Msa0465810:intron | 50.0% |
| AGGTAAGAGGCTTCCTGACT+GGG | + | chr3_3:66276530-66276549 | None:intergenic | 50.0% | |
| AAGGTAAGAGGCTTCCTGAC+TGG | + | chr3_3:66276531-66276550 | None:intergenic | 50.0% | |
| TCAGGAAGCCTCTTACCTTC+TGG | - | chr3_3:66276532-66276551 | Msa0465810:intron | 50.0% | |
| AGCCTCACTACGAGACTAAG+AGG | + | chr3_3:66277056-66277075 | None:intergenic | 50.0% | |
| GTGAGCAGGAATGTTGTGTG+TGG | + | chr3_3:66277121-66277140 | None:intergenic | 50.0% | |
| GGAAGCAAACATGAGTGAGC+AGG | + | chr3_3:66277135-66277154 | None:intergenic | 50.0% | |
| !!! | GCGTCGATTACGGCATTTTC+TGG | - | chr3_3:66277186-66277205 | Msa0465810:intron | 50.0% |
| !!! | GCAGCCCACCGAATTTTTTC+TGG | + | chr3_3:66277220-66277239 | None:intergenic | 50.0% |
| TGCAGGATTGATGAGAAGCC+TGG | - | chr3_3:66278923-66278942 | Msa0465810:intron | 50.0% | |
| ! | AGAGCATCAACAGCCACTCT+TGG | + | chr3_3:66278965-66278984 | None:intergenic | 50.0% |
| AAGAGTGGCTGTTGATGCTC+TGG | - | chr3_3:66278964-66278983 | Msa0465810:intron | 50.0% | |
| AGAGTGGCTGTTGATGCTCT+GGG | - | chr3_3:66278965-66278984 | Msa0465810:intron | 50.0% | |
| !! | GCTTCTGAGACCGGAACAAT+TGG | + | chr3_3:66279043-66279062 | None:intergenic | 50.0% |
| GTTCTCCAACAGGATTACCC+TGG | - | chr3_3:66279071-66279090 | Msa0465810:intron | 50.0% | |
| CTCATTCCCATGCTGCTCGT+TGG | - | chr3_3:66275172-66275191 | Msa0465810:CDS | 55.0% | |
| TCCCATGCTGCTCGTTGGTA+AGG | - | chr3_3:66275177-66275196 | Msa0465810:CDS | 55.0% | |
| GCAGGACCGTTATTGGGTCA+AGG | - | chr3_3:66275916-66275935 | Msa0465810:intron | 55.0% | |
| GAGCTGGGCATAGCCAGTAA+GGG | + | chr3_3:66276144-66276163 | None:intergenic | 55.0% | |
| TGAGCTGGGCATAGCCAGTA+AGG | + | chr3_3:66276145-66276164 | None:intergenic | 55.0% | |
| GGAGAGGTAACAGCTGAGCT+GGG | + | chr3_3:66276159-66276178 | None:intergenic | 55.0% | |
| AGGAGAGGTAACAGCTGAGC+TGG | + | chr3_3:66276160-66276179 | None:intergenic | 55.0% | |
| GGCAAGTCCCATTTATCGCC+AGG | + | chr3_3:66278944-66278963 | None:intergenic | 55.0% | |
| ! | TGCTCTGGGTGCTGCAATGC+TGG | - | chr3_3:66278979-66278998 | Msa0465810:intron | 60.0% |
| GCTGCCGACAGGCCAGTCTA+TGG | - | chr3_3:66276908-66276927 | Msa0465810:intron | 65.0% | |
| !! | GGTGGGCTGCTGAAGCTGCA+TGG | - | chr3_3:66277230-66277249 | Msa0465810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 66274815 | 66279471 | 66274815 | ID=Msa0465810;Name=Msa0465810 |
| chr3_3 | mRNA | 66274815 | 66279471 | 66274815 | ID=Msa0465810-mRNA-1;Parent=Msa0465810;Name=Msa0465810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0.85|1|1|1|7|351|308 |
| chr3_3 | exon | 66274815 | 66275358 | 66274815 | ID=Msa0465810-mRNA-1:exon:14998;Parent=Msa0465810-mRNA-1 |
| chr3_3 | exon | 66275485 | 66275582 | 66275485 | ID=Msa0465810-mRNA-1:exon:14997;Parent=Msa0465810-mRNA-1 |
| chr3_3 | exon | 66276980 | 66277171 | 66276980 | ID=Msa0465810-mRNA-1:exon:14996;Parent=Msa0465810-mRNA-1 |
| chr3_3 | exon | 66277257 | 66277367 | 66277257 | ID=Msa0465810-mRNA-1:exon:14995;Parent=Msa0465810-mRNA-1 |
| chr3_3 | exon | 66278349 | 66278390 | 66278349 | ID=Msa0465810-mRNA-1:exon:14994;Parent=Msa0465810-mRNA-1 |
| chr3_3 | exon | 66279088 | 66279171 | 66279088 | ID=Msa0465810-mRNA-1:exon:14993;Parent=Msa0465810-mRNA-1 |
| chr3_3 | exon | 66279265 | 66279471 | 66279265 | ID=Msa0465810-mRNA-1:exon:14992;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66279265 | 66279471 | 66279265 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66279088 | 66279171 | 66279088 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66278349 | 66278390 | 66278349 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66277257 | 66277367 | 66277257 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66276980 | 66277171 | 66276980 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66275485 | 66275582 | 66275485 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | CDS | 66275166 | 66275358 | 66275166 | ID=Msa0465810-mRNA-1:cds;Parent=Msa0465810-mRNA-1 |
| chr3_3 | three_prime_UTR | 66274815 | 66275165 | 66274815 | ID=Msa0465810-mRNA-1:three_prime_utr;Parent=Msa0465810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
