Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358280 | XP_003602089.1 | 97.078 | 308 | 8 | 1 | 1 | 308 | 1 | 307 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358280 | sp|Q9M643|CCI1_ARATH | 81.655 | 278 | 51 | 0 | 26 | 303 | 3 | 280 | 2.48e-171 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358280 | G7J5I6 | 97.078 | 308 | 8 | 1 | 1 | 308 | 1 | 307 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0307280 | Msa0358280 | 0.823657 | 1.230877e-53 | -8.615850e-47 |
| Msa0358280 | Msa0358310 | 0.905658 | 3.401894e-80 | -8.615850e-47 |
| Msa0358280 | Msa0465810 | 0.939256 | 1.723920e-99 | -8.615850e-47 |
| Msa0358280 | Msa1072960 | 0.818177 | 2.245583e-52 | -8.615850e-47 |
| Msa0358280 | Msa1160910 | 0.817161 | 3.806802e-52 | -8.615850e-47 |
| Msa0358280 | Msa1450600 | 0.821206 | 4.566521e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358280 | MtrunA17_Chr3g0116181 | 97.527 | 283 | 7 | 0 | 26 | 308 | 3 | 285 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358280 | AT5G50375.1 | 81.655 | 278 | 51 | 0 | 26 | 303 | 3 | 280 | 2.52e-172 | 478 |
| Msa0358280 | AT5G50375.2 | 83.197 | 244 | 41 | 0 | 26 | 269 | 3 | 246 | 6.41e-152 | 427 |
| Msa0358280 | AT5G50375.3 | 80.660 | 212 | 41 | 0 | 92 | 303 | 1 | 212 | 4.72e-130 | 369 |
Find 77 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTATGGCGCATCTTTC+TGG | 0.013477 | 3_1:+43043760 | Msa0358280:CDS |
| GTTATGTTGGGAATTATTTC+TGG | 0.136999 | 3_1:+43041689 | Msa0358280:CDS |
| TCCTTCTCTACACTCCTTTC+TGG | 0.145961 | 3_1:+43039724 | Msa0358280:CDS |
| TGGACTATCCTTGTATTTAA+TGG | 0.184932 | 3_1:+43043977 | Msa0358280:three_prime_UTR |
| CGATCCACAAATTCATAATA+AGG | 0.203511 | 3_1:-43043452 | None:intergenic |
| ATACATTCTGATCAGAAATT+TGG | 0.235454 | 3_1:-43044008 | None:intergenic |
| ATGAGAAGCCTGGCGATAAA+TGG | 0.259830 | 3_1:+43043678 | Msa0358280:CDS |
| GAATTGGAGTATTTACTTCT+TGG | 0.280765 | 3_1:+43039892 | Msa0358280:CDS |
| TTGTGTTAACGTTAATATAT+TGG | 0.286445 | 3_1:-43044077 | None:intergenic |
| TTGACAGAAATTTACTGAAT+TGG | 0.288844 | 3_1:+43039876 | Msa0358280:intron |
| GACTTATGGCGCATCTTTCT+GGG | 0.315138 | 3_1:+43043761 | Msa0358280:CDS |
| CGTGGATAGAACTCAGAAAA+TGG | 0.317528 | 3_1:+43043872 | Msa0358280:three_prime_UTR |
| TTCTGGCTTTCTCTTTCTCT+TGG | 0.320079 | 3_1:+43039741 | Msa0358280:CDS |
| CTTTCTGGGTCCAATTGTTC+CGG | 0.326439 | 3_1:+43043775 | Msa0358280:CDS |
| TATCTTGGCAGGACCGTTAT+TGG | 0.327717 | 3_1:+43040648 | Msa0358280:CDS |
| AAGAGTGGCTGTTGATGCTC+TGG | 0.333145 | 3_1:+43043709 | Msa0358280:CDS |
| TCACAATAATACTTGACTTA+TGG | 0.346712 | 3_1:+43043747 | Msa0358280:CDS |
| TGAGCTTCCCAATGTTTCTA+AGG | 0.353587 | 3_1:+43043525 | Msa0358280:CDS |
| TAGTGCTTTGATGTTGTATC+AGG | 0.366662 | 3_1:+43044048 | Msa0358280:three_prime_UTR |
| ATCTTGGCAGGACCGTTATT+GGG | 0.374611 | 3_1:+43040649 | Msa0358280:CDS |
| TGCTCTGGGTGCTGCAATGC+TGG | 0.375660 | 3_1:+43043724 | Msa0358280:CDS |
| ACATGACACTGCGTCGATTA+CGG | 0.378459 | 3_1:+43041921 | Msa0358280:CDS |
| AATTGGAGTATTTACTTCTT+GGG | 0.384997 | 3_1:+43039893 | Msa0358280:CDS |
| GCTGCCGACAGGCCAGTCTA+TGG | 0.400194 | 3_1:+43041653 | Msa0358280:intron |
| GCTTCTGAGACCGGAACAAT+TGG | 0.402278 | 3_1:-43043785 | None:intergenic |
| GTTCCCTTATTATGAATTTG+TGG | 0.419718 | 3_1:+43043448 | Msa0358280:intron |
| AAGCTAGAAGTTGGTGAAGC+TGG | 0.422058 | 3_1:-43039657 | None:intergenic |
| AAAACCTCGTAAAGCTTGTA+TGG | 0.428880 | 3_1:-43039774 | None:intergenic |
| ATAATAATCTTCAGTTATGT+TGG | 0.432752 | 3_1:+43041676 | Msa0358280:CDS |
| CATCTTATACCTTTCCATCA+TGG | 0.442559 | 3_1:+43041740 | Msa0358280:CDS |
| CTCAGAAAATGGAGACAGTA+TGG | 0.447570 | 3_1:+43043883 | Msa0358280:three_prime_UTR |
| AAACTTACCTTAGAAACATT+GGG | 0.450083 | 3_1:-43043532 | None:intergenic |
| GCAAAACAGTGTTCTCCAAC+AGG | 0.453257 | 3_1:+43043806 | Msa0358280:CDS |
| CGAGAATCTATGTACAAAGT+TGG | 0.454985 | 3_1:+43043473 | Msa0358280:CDS |
| TAATAATCTTCAGTTATGTT+GGG | 0.455018 | 3_1:+43041677 | Msa0358280:CDS |
| GGCAAGTCCCATTTATCGCC+AGG | 0.463076 | 3_1:-43043686 | None:intergenic |
| CACCAAATCCCAGTAAAAGA+TGG | 0.463224 | 3_1:+43039688 | Msa0358280:CDS |
| AAAACTTACCTTAGAAACAT+TGG | 0.463283 | 3_1:-43043533 | None:intergenic |
| TGCAGGATTGATGAGAAGCC+TGG | 0.467133 | 3_1:+43043668 | Msa0358280:intron |
| TGAGAAGCCTGGCGATAAAT+GGG | 0.467332 | 3_1:+43043679 | Msa0358280:CDS |
| GATCCACAAATTCATAATAA+GGG | 0.475328 | 3_1:-43043451 | None:intergenic |
| TCCCATGCTGCTCGTTGGTA+AGG | 0.479641 | 3_1:+43039945 | Msa0358280:CDS |
| TGGAAATAGCTAACGTCTCC+AGG | 0.481480 | 3_1:-43042027 | None:intergenic |
| CACTGCAACCATTAAATACA+AGG | 0.491608 | 3_1:-43043985 | None:intergenic |
| CTCATTCCCATGCTGCTCGT+TGG | 0.495369 | 3_1:+43039940 | Msa0358280:CDS |
| AGCATGGGAATGAGAAAAGC+AGG | 0.497308 | 3_1:-43039931 | None:intergenic |
| AGAGAAAGAGAAAGCCAGAA+AGG | 0.500890 | 3_1:-43039738 | None:intergenic |
| ACGTAATTCTCATGTGAGAT+TGG | 0.503741 | 3_1:-43043852 | None:intergenic |
| CATTTACCTTGACCCAATAA+CGG | 0.503869 | 3_1:-43040661 | None:intergenic |
| ACCTTACCAACGAGCAGCAT+GGG | 0.504398 | 3_1:-43039946 | None:intergenic |
| ACCAAATCCCAGTAAAAGAT+GGG | 0.506208 | 3_1:+43039689 | Msa0358280:CDS |
| TCAGTAAATTAGTTTATGAA+AGG | 0.507333 | 3_1:+43044123 | Msa0358280:three_prime_UTR |
| AGGCTGATAGAGGCATATCT+TGG | 0.518841 | 3_1:+43040633 | Msa0358280:intron |
| AGAGTGGCTGTTGATGCTCT+GGG | 0.523207 | 3_1:+43043710 | Msa0358280:CDS |
| AGAGCATCAACAGCCACTCT+TGG | 0.534026 | 3_1:-43043707 | None:intergenic |
| TGATAGAGGCATATCTTGGC+AGG | 0.534646 | 3_1:+43040637 | Msa0358280:CDS |
| GAAGATTATTATCCATAGAC+TGG | 0.537540 | 3_1:-43041665 | None:intergenic |
| CTTCACCAACTTCTAGCTTG+TGG | 0.537828 | 3_1:+43039661 | Msa0358280:CDS |
| GGAAACAAACATGAGTGAGC+AGG | 0.556464 | 3_1:-43041877 | None:intergenic |
| GCCAGAAAGGAGTGTAGAGA+AGG | 0.557819 | 3_1:-43039725 | None:intergenic |
| GGTGGGCTGCTGAAGCTGCA+TGG | 0.560758 | 3_1:+43041975 | Msa0358280:CDS |
| GCTAACCACAAGCTAGAAGT+TGG | 0.573885 | 3_1:-43039666 | None:intergenic |
| GGTATGCTATAAAATAAGCA+AGG | 0.582491 | 3_1:-43042006 | None:intergenic |
| GCAGGACCGTTATTGGGTCA+AGG | 0.582907 | 3_1:+43040655 | Msa0358280:CDS |
| GAAAACCAGGGTAATCCTGT+TGG | 0.584944 | 3_1:-43043821 | None:intergenic |
| TCGATGCAACATGATAAAAG+AGG | 0.599097 | 3_1:-43041898 | None:intergenic |
| TACCTTACCAACGAGCAGCA+TGG | 0.601152 | 3_1:-43039947 | None:intergenic |
| GTTCTCCAACAGGATTACCC+TGG | 0.614928 | 3_1:+43043816 | Msa0358280:CDS |
| ATTGGCGTGTGTTGAAAACC+AGG | 0.623943 | 3_1:-43043834 | None:intergenic |
| TAAATGGGACTTGCCAAGAG+TGG | 0.629905 | 3_1:+43043694 | Msa0358280:CDS |
| GTATGCTATAAAATAAGCAA+GGG | 0.656470 | 3_1:-43042005 | None:intergenic |
| AAAATGTTGATCGTTATGTG+TGG | 0.673112 | 3_1:+43043931 | Msa0358280:three_prime_UTR |
| TGTTCCATACAAGCTTTACG+AGG | 0.674686 | 3_1:+43039770 | Msa0358280:CDS |
| CCAAATCCCAGTAAAAGATG+GGG | 0.679597 | 3_1:+43039690 | Msa0358280:CDS |
| AATCTCACATGAGAATTACG+TGG | 0.705172 | 3_1:+43043854 | Msa0358280:exon |
| TTGGCGTGTGTTGAAAACCA+GGG | 0.733461 | 3_1:-43043833 | None:intergenic |
| GTGAGCAGGAATGTTGTGTG+TGG | 0.771197 | 3_1:-43041863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAAAAAATAATTTTCTT+AGG | + | chr3_1:43040843-43040862 | Msa0358280:intron | 10.0% |
| !! | ATTAAATAAATATGTATATG+TGG | - | chr3_1:43041594-43041613 | None:intergenic | 10.0% |
| !! | TAAATTATTTGAATTGTTAT+GGG | + | chr3_1:43042464-43042483 | Msa0358280:intron | 10.0% |
| !!! | AATAGTGAAATTTATTTTTT+TGG | + | chr3_1:43044150-43044169 | Msa0358280:three_prime_UTR | 10.0% |
| !!! | CTTTTTTATCAAAATAAATA+CGG | + | chr3_1:43044192-43044211 | Msa0358280:three_prime_UTR | 10.0% |
| !!! | TTTTTTATCAAAATAAATAC+GGG | + | chr3_1:43044193-43044212 | Msa0358280:three_prime_UTR | 10.0% |
| !!! | GATTGACTTATTTAAATTTA+GGG | - | chr3_1:43040117-43040136 | None:intergenic | 15.0% |
| !!! | TTTTTTGGATATTATGATAA+AGG | + | chr3_1:43041511-43041530 | Msa0358280:intron | 15.0% |
| !! | ACATATTTATTTAATTCTGT+TGG | + | chr3_1:43041599-43041618 | Msa0358280:intron | 15.0% |
| !! | TTATTATTATGATCTTTGTT+TGG | + | chr3_1:43042082-43042101 | Msa0358280:intron | 15.0% |
| !! | GTAAATTATTTGAATTGTTA+TGG | + | chr3_1:43042463-43042482 | Msa0358280:intron | 15.0% |
| !!! | TGTTGATTGTAATATTTTTT+AGG | + | chr3_1:43042656-43042675 | Msa0358280:intron | 15.0% |
| !! | TTGCCAAAAAATATAAAAAA+GGG | - | chr3_1:43042863-43042882 | None:intergenic | 15.0% |
| !! | TTTGCCAAAAAATATAAAAA+AGG | - | chr3_1:43042864-43042883 | None:intergenic | 15.0% |
| !! | ATAATGTTATTGTTATGTAT+TGG | + | chr3_1:43043416-43043435 | Msa0358280:intron | 15.0% |
| !! | AAATGATTGAAAAAGAATAG+AGG | - | chr3_1:43039809-43039828 | None:intergenic | 20.0% |
| !!! | GGATTGACTTATTTAAATTT+AGG | - | chr3_1:43040118-43040137 | None:intergenic | 20.0% |
| !!! | GGATTGACTTATTTAAATTT+AGG | - | chr3_1:43040118-43040137 | None:intergenic | 20.0% |
| !! | GATATTCATACTTATTAACA+AGG | + | chr3_1:43040485-43040504 | Msa0358280:intron | 20.0% |
| !!! | GAAGAAGATAAACTATTTTT+TGG | - | chr3_1:43040541-43040560 | None:intergenic | 20.0% |
| !!! | AATCATATATCAAATTTTGC+AGG | + | chr3_1:43040613-43040632 | Msa0358280:intron | 20.0% |
| !! | AATACAGCAATGTAAATATT+TGG | - | chr3_1:43040707-43040726 | None:intergenic | 20.0% |
| !!! | AATAATTTTCTTAGGCATAA+TGG | + | chr3_1:43040851-43040870 | Msa0358280:intron | 20.0% |
| !! | ATAAGGAAAATAGAATTTGA+GGG | - | chr3_1:43040966-43040985 | None:intergenic | 20.0% |
| !! | AATAAGGAAAATAGAATTTG+AGG | - | chr3_1:43040967-43040986 | None:intergenic | 20.0% |
| !! | TACTTTGCACTTTATTATTA+GGG | - | chr3_1:43041117-43041136 | None:intergenic | 20.0% |
| !! | ATACTTTGCACTTTATTATT+AGG | - | chr3_1:43041118-43041137 | None:intergenic | 20.0% |
| !! | AAGAAACTAAACATAACAAA+AGG | + | chr3_1:43041176-43041195 | Msa0358280:intron | 20.0% |
| !!! | CTAAGTAGTAAAATCATTTT+AGG | - | chr3_1:43041474-43041493 | None:intergenic | 20.0% |
| !! | ATAATAATCTTCAGTTATGT+TGG | + | chr3_1:43041676-43041695 | Msa0358280:CDS | 20.0% |
| !! | TAATAATCTTCAGTTATGTT+GGG | + | chr3_1:43041677-43041696 | Msa0358280:CDS | 20.0% |
| !! | AATAATAAAAACCAGTAGAA+TGG | - | chr3_1:43042070-43042089 | None:intergenic | 20.0% |
| !!! | TGCATTTTTGGATATATTTA+TGG | + | chr3_1:43042108-43042127 | Msa0358280:intron | 20.0% |
| !! | CAATTCAAATAATTTACGAA+GGG | - | chr3_1:43042460-43042479 | None:intergenic | 20.0% |
| !! | ACAATTCAAATAATTTACGA+AGG | - | chr3_1:43042461-43042480 | None:intergenic | 20.0% |
| !! | TGCCAAAAAATATAAAAAAG+GGG | - | chr3_1:43042862-43042881 | None:intergenic | 20.0% |
| !! | ACAAGAAAATATATGAAGAT+AGG | - | chr3_1:43043050-43043069 | None:intergenic | 20.0% |
| !! | AATTTCTCAAATAGAAGAAA+TGG | - | chr3_1:43043277-43043296 | None:intergenic | 20.0% |
| !! | TTGTGTTAACGTTAATATAT+TGG | - | chr3_1:43044080-43044099 | None:intergenic | 20.0% |
| !!! | TCAGTAAATTAGTTTATGAA+AGG | + | chr3_1:43044123-43044142 | Msa0358280:three_prime_UTR | 20.0% |
| !!! | TCTATTTTGTGTTTCTGTAT+TGG | + | chr3_1:43039617-43039636 | Msa0358280:CDS | 25.0% |
| ! | TTGAAAAAGAATAGAGGTAA+AGG | - | chr3_1:43039803-43039822 | None:intergenic | 25.0% |
| ! | TTGACAGAAATTTACTGAAT+TGG | + | chr3_1:43039876-43039895 | Msa0358280:intron | 25.0% |
| !! | AATTGGAGTATTTACTTCTT+GGG | + | chr3_1:43039893-43039912 | Msa0358280:CDS | 25.0% |
| !! | ATTTAAATTTAGGGTCTGTT+TGG | - | chr3_1:43040139-43040158 | None:intergenic | 25.0% |
| ! | TTACAAATAAGTATTCAGCA+GGG | - | chr3_1:43040179-43040198 | None:intergenic | 25.0% |
| !! | ACTGTTTTCATAAGCTATTT+TGG | + | chr3_1:43040253-43040272 | Msa0358280:intron | 25.0% |
| ! | CACAAACTTAATGCAAAAAA+TGG | - | chr3_1:43040353-43040372 | None:intergenic | 25.0% |
| !! | ATTTATGCTATGGCAATTTT+TGG | + | chr3_1:43040392-43040411 | Msa0358280:intron | 25.0% |
| ! | TGAATATCAGCATAAAAAGT+GGG | - | chr3_1:43040473-43040492 | None:intergenic | 25.0% |
| ! | ATGAATATCAGCATAAAAAG+TGG | - | chr3_1:43040474-43040493 | None:intergenic | 25.0% |
| ! | TAAAAAACTGCATAACTCAT+CGG | - | chr3_1:43040512-43040531 | None:intergenic | 25.0% |
| !!! | GTCAAGGTAAATGTTTTTAT+AGG | + | chr3_1:43040671-43040690 | Msa0358280:intron | 25.0% |
| ! | TGTCATTGAATCATAAATGA+AGG | - | chr3_1:43040745-43040764 | None:intergenic | 25.0% |
| ! | CATTTATGATTCAATGACAT+TGG | + | chr3_1:43040746-43040765 | Msa0358280:intron | 25.0% |
| ! | TGCATTAACATGATTGAAAA+GGG | - | chr3_1:43041157-43041176 | None:intergenic | 25.0% |
| ! | TTGCATTAACATGATTGAAA+AGG | - | chr3_1:43041158-43041177 | None:intergenic | 25.0% |
| ! | TAAATCTGAATGTAGATGAA+AGG | - | chr3_1:43041439-43041458 | None:intergenic | 25.0% |
| !!! | GTGTTATTGTTGCTATTTTT+TGG | + | chr3_1:43041496-43041515 | Msa0358280:intron | 25.0% |
| ! | TGGATATTATGATAAAGGAA+TGG | + | chr3_1:43041516-43041535 | Msa0358280:intron | 25.0% |
| ! | AGCACAATAAATCCATAATT+AGG | - | chr3_1:43041568-43041587 | None:intergenic | 25.0% |
| ! | GTATGCTATAAAATAAGCAA+GGG | - | chr3_1:43042008-43042027 | None:intergenic | 25.0% |
| !!! | CTATTGTTATTTTCGTAGTT+AGG | + | chr3_1:43042344-43042363 | Msa0358280:intron | 25.0% |
| ! | ATAAAACAAAGTTGCAGAAA+GGG | - | chr3_1:43042375-43042394 | None:intergenic | 25.0% |
| ! | AGGCTGATATATGAAAATTA+TGG | - | chr3_1:43042684-43042703 | None:intergenic | 25.0% |
| !!! | ACATGTGTAAAGACATTTTT+TGG | + | chr3_1:43042722-43042741 | Msa0358280:intron | 25.0% |
| !!! | TCAGTATTTAGCTTTTACAT+TGG | + | chr3_1:43042789-43042808 | Msa0358280:intron | 25.0% |
| !!! | TCCCCCTTTTTTATATTTTT+TGG | + | chr3_1:43042857-43042876 | Msa0358280:intron | 25.0% |
| ! | GCCAAAAAATATAAAAAAGG+GGG | - | chr3_1:43042861-43042880 | None:intergenic | 25.0% |
| ! | TAAATACGTCAAAGAATTAG+AGG | - | chr3_1:43042930-43042949 | None:intergenic | 25.0% |
| ! | GGTTCAATCAAAAGAAAAAA+GGG | - | chr3_1:43042976-43042995 | None:intergenic | 25.0% |
| ! | AGGTTCAATCAAAAGAAAAA+AGG | - | chr3_1:43042977-43042996 | None:intergenic | 25.0% |
| ! | ATATCAAAATATCCACTTGA+AGG | - | chr3_1:43043001-43043020 | None:intergenic | 25.0% |
| !!! | GCTTAAAATTTGATTTTGCT+AGG | + | chr3_1:43043154-43043173 | Msa0358280:intron | 25.0% |
| !! | AATTTTCTCAATCACTCTTT+TGG | + | chr3_1:43043293-43043312 | Msa0358280:intron | 25.0% |
| ! | TTACCAAACTAACAAATTGT+TGG | - | chr3_1:43043319-43043338 | None:intergenic | 25.0% |
| ! | AAACGTACATTACATATTGA+AGG | - | chr3_1:43043390-43043409 | None:intergenic | 25.0% |
| ! | GATCCACAAATTCATAATAA+GGG | - | chr3_1:43043454-43043473 | None:intergenic | 25.0% |
| ! | AAACTTACCTTAGAAACATT+GGG | - | chr3_1:43043535-43043554 | None:intergenic | 25.0% |
| ! | AAAACTTACCTTAGAAACAT+TGG | - | chr3_1:43043536-43043555 | None:intergenic | 25.0% |
| ! | CATTGTACTAATCTTATTGA+TGG | + | chr3_1:43043630-43043649 | Msa0358280:intron | 25.0% |
| ! | TCACAATAATACTTGACTTA+TGG | + | chr3_1:43043747-43043766 | Msa0358280:CDS | 25.0% |
| !!! | TCAACATTTTTGGATTGTTT+TGG | - | chr3_1:43043921-43043940 | None:intergenic | 25.0% |
| ! | ATACATTCTGATCAGAAATT+TGG | - | chr3_1:43044011-43044030 | None:intergenic | 25.0% |
| ! | TTGATAAAAAAGAACTGATC+TGG | - | chr3_1:43044184-43044203 | None:intergenic | 25.0% |
| ! | GAATTGGAGTATTTACTTCT+TGG | + | chr3_1:43039892-43039911 | Msa0358280:CDS | 30.0% |
| CTTACAAATAAGTATTCAGC+AGG | - | chr3_1:43040180-43040199 | None:intergenic | 30.0% | |
| ACCCTATTACATTTATGCTA+TGG | + | chr3_1:43040382-43040401 | Msa0358280:intron | 30.0% | |
| GCCATAGCATAAATGTAATA+GGG | - | chr3_1:43040386-43040405 | None:intergenic | 30.0% | |
| TGCCATAGCATAAATGTAAT+AGG | - | chr3_1:43040387-43040406 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTATTACCAAGAC+TGG | + | chr3_1:43040975-43040994 | Msa0358280:intron | 30.0% |
| CACGGTTTCAAATACTTTAA+TGG | - | chr3_1:43041001-43041020 | None:intergenic | 30.0% | |
| GTGCACATTTGACATTATAT+TGG | + | chr3_1:43041034-43041053 | Msa0358280:intron | 30.0% | |
| CATTAACATGATTGAAAAGG+GGG | - | chr3_1:43041155-43041174 | None:intergenic | 30.0% | |
| GCATTAACATGATTGAAAAG+GGG | - | chr3_1:43041156-43041175 | None:intergenic | 30.0% | |
| ATAAACTCACGCAATTCATA+TGG | - | chr3_1:43041207-43041226 | None:intergenic | 30.0% | |
| ! | TATTTTTCATGTCTTGATCG+AGG | + | chr3_1:43041394-43041413 | Msa0358280:intron | 30.0% |
| ! | ATTTTTCATGTCTTGATCGA+GGG | + | chr3_1:43041395-43041414 | Msa0358280:intron | 30.0% |
| CTACTTTAGACTCCTAATTA+TGG | + | chr3_1:43041553-43041572 | Msa0358280:intron | 30.0% | |
| AGCAAATACATGTACATGTT+AGG | - | chr3_1:43041636-43041655 | None:intergenic | 30.0% | |
| GAAGATTATTATCCATAGAC+TGG | - | chr3_1:43041668-43041687 | None:intergenic | 30.0% | |
| GTTATGTTGGGAATTATTTC+TGG | + | chr3_1:43041689-43041708 | Msa0358280:CDS | 30.0% | |
| !!! | TCATTACTTTTTCACAGTTC+TGG | + | chr3_1:43041714-43041733 | Msa0358280:CDS | 30.0% |
| !!! | CATTACTTTTTCACAGTTCT+GGG | + | chr3_1:43041715-43041734 | Msa0358280:CDS | 30.0% |
| ! | ACATTGTTCATTTTCCATGA+TGG | - | chr3_1:43041757-43041776 | None:intergenic | 30.0% |
| !! | CATTGATTTGCTCTATTTGT+TGG | + | chr3_1:43041831-43041850 | Msa0358280:intron | 30.0% |
| CTGATACACCAGAAAAAATT+CGG | + | chr3_1:43041954-43041973 | Msa0358280:CDS | 30.0% | |
| GGTATGCTATAAAATAAGCA+AGG | - | chr3_1:43042009-43042028 | None:intergenic | 30.0% | |
| !!! | TGCTTATTTTATAGCATACC+TGG | + | chr3_1:43042009-43042028 | Msa0358280:CDS | 30.0% |
| ! | TTAGCTATTTCCAATGTATG+TGG | + | chr3_1:43042037-43042056 | Msa0358280:intron | 30.0% |
| ! | TTTGTTTGGTCATGCATTTT+TGG | + | chr3_1:43042096-43042115 | Msa0358280:intron | 30.0% |
| ! | TGCAATCTTTTCTTCTTGAA+TGG | + | chr3_1:43042133-43042152 | Msa0358280:intron | 30.0% |
| CAATGCATTTGTACATTTCA+AGG | + | chr3_1:43042297-43042316 | Msa0358280:intron | 30.0% | |
| CATAAAACAAAGTTGCAGAA+AGG | - | chr3_1:43042376-43042395 | None:intergenic | 30.0% | |
| AATAGCCAAATCAATGTGTA+TGG | - | chr3_1:43042751-43042770 | None:intergenic | 30.0% | |
| TGAAGATAGGAAATTTCTGA+AGG | - | chr3_1:43043037-43043056 | None:intergenic | 30.0% | |
| TACTTAATTCTAGATGCTCA+AGG | + | chr3_1:43043191-43043210 | Msa0358280:intron | 30.0% | |
| !!! | TGGTTAGTTTTTTCTTTGCA+TGG | + | chr3_1:43043219-43043238 | Msa0358280:intron | 30.0% |
| !!! | CATGGATTATTTTTATCCCT+TGG | + | chr3_1:43043237-43043256 | Msa0358280:intron | 30.0% |
| CATTACATATTGAAGGTCAA+AGG | - | chr3_1:43043383-43043402 | None:intergenic | 30.0% | |
| GTTCCCTTATTATGAATTTG+TGG | + | chr3_1:43043448-43043467 | Msa0358280:intron | 30.0% | |
| CGATCCACAAATTCATAATA+AGG | - | chr3_1:43043455-43043474 | None:intergenic | 30.0% | |
| ! | CACATAACGATCAACATTTT+TGG | - | chr3_1:43043931-43043950 | None:intergenic | 30.0% |
| AAAATGTTGATCGTTATGTG+TGG | + | chr3_1:43043931-43043950 | Msa0358280:three_prime_UTR | 30.0% | |
| ATCTGCAGAAAAAACTAACT+TGG | + | chr3_1:43043957-43043976 | Msa0358280:three_prime_UTR | 30.0% | |
| TGGACTATCCTTGTATTTAA+TGG | + | chr3_1:43043977-43043996 | Msa0358280:three_prime_UTR | 30.0% | |
| ACCAAATCCCAGTAAAAGAT+GGG | + | chr3_1:43039689-43039708 | Msa0358280:CDS | 35.0% | |
| AAAACCTCGTAAAGCTTGTA+TGG | - | chr3_1:43039777-43039796 | None:intergenic | 35.0% | |
| AGTAAGACAGTGTTACATTC+TGG | - | chr3_1:43039852-43039871 | None:intergenic | 35.0% | |
| CTCAAATAAACTAACCCTGA+TGG | + | chr3_1:43040327-43040346 | Msa0358280:intron | 35.0% | |
| AATGCAAAAAATGGCCATCA+GGG | - | chr3_1:43040344-43040363 | None:intergenic | 35.0% | |
| TAATGCAAAAAATGGCCATC+AGG | - | chr3_1:43040345-43040364 | None:intergenic | 35.0% | |
| AGAATCGACATTCAAGTACT+GGG | - | chr3_1:43040440-43040459 | None:intergenic | 35.0% | |
| AAGAATCGACATTCAAGTAC+TGG | - | chr3_1:43040441-43040460 | None:intergenic | 35.0% | |
| !! | TACTTGAATGTCGATTCTTC+TGG | + | chr3_1:43040442-43040461 | Msa0358280:intron | 35.0% |
| !! | ACTTGAATGTCGATTCTTCT+GGG | + | chr3_1:43040443-43040462 | Msa0358280:intron | 35.0% |
| CATTTACCTTGACCCAATAA+CGG | - | chr3_1:43040664-43040683 | None:intergenic | 35.0% | |
| AATACTTTAATGGCCAGTCT+TGG | - | chr3_1:43040991-43041010 | None:intergenic | 35.0% | |
| !! | GGTGTTATTCGTCTTGTATT+TGG | + | chr3_1:43041055-43041074 | Msa0358280:intron | 35.0% |
| CATCTTATACCTTTCCATCA+TGG | + | chr3_1:43041740-43041759 | Msa0358280:CDS | 35.0% | |
| !! | GTTCATTTTCCATGATGGAA+AGG | - | chr3_1:43041752-43041771 | None:intergenic | 35.0% |
| AAAATGAACAATGTAAGCCG+AGG | + | chr3_1:43041763-43041782 | Msa0358280:intron | 35.0% | |
| GAGACTAAGAGGTAACTAAT+AGG | - | chr3_1:43041790-43041809 | None:intergenic | 35.0% | |
| !! | TGATTTGCTCTATTTGTTGG+TGG | + | chr3_1:43041834-43041853 | Msa0358280:intron | 35.0% |
| TCGATGCAACATGATAAAAG+AGG | - | chr3_1:43041901-43041920 | None:intergenic | 35.0% | |
| ATACACCAGAAAAAATTCGG+TGG | + | chr3_1:43041957-43041976 | Msa0358280:CDS | 35.0% | |
| TACACCAGAAAAAATTCGGT+GGG | + | chr3_1:43041958-43041977 | Msa0358280:CDS | 35.0% | |
| !! | TGGTTTGTTACCACATACAT+TGG | - | chr3_1:43042050-43042069 | None:intergenic | 35.0% |
| ! | TTTTCTTCTTGAATGGCTCA+TGG | + | chr3_1:43042140-43042159 | Msa0358280:intron | 35.0% |
| ! | CATTGAAGCTCAGATTTTCT+GGG | - | chr3_1:43042282-43042301 | None:intergenic | 35.0% |
| TAATTTACGAAGGGAAACCA+GGG | - | chr3_1:43042451-43042470 | None:intergenic | 35.0% | |
| ATAATTTACGAAGGGAAACC+AGG | - | chr3_1:43042452-43042471 | None:intergenic | 35.0% | |
| GTCTAAACTCAAATGAGTGT+AGG | - | chr3_1:43042704-43042723 | None:intergenic | 35.0% | |
| ! | GGAATCCATACACATTGATT+TGG | + | chr3_1:43042743-43042762 | Msa0358280:intron | 35.0% |
| GATTTGGCTATTCTAGATTG+AGG | + | chr3_1:43042759-43042778 | Msa0358280:intron | 35.0% | |
| AAAGGGAGAAATGTCTAAGA+TGG | - | chr3_1:43042959-43042978 | None:intergenic | 35.0% | |
| CAAAATATCCACTTGAAGGT+AGG | - | chr3_1:43042997-43043016 | None:intergenic | 35.0% | |
| !! | CAGAAGTACCTTTATGCTTA+AGG | + | chr3_1:43043126-43043145 | Msa0358280:intron | 35.0% |
| AGCATCAACCTTAAGCATAA+AGG | - | chr3_1:43043137-43043156 | None:intergenic | 35.0% | |
| TCTAGATGCTCAAGGTTAAT+TGG | + | chr3_1:43043199-43043218 | Msa0358280:intron | 35.0% | |
| !! | TGGCCAACAATTTGTTAGTT+TGG | + | chr3_1:43043313-43043332 | Msa0358280:intron | 35.0% |
| CGAGAATCTATGTACAAAGT+TGG | + | chr3_1:43043473-43043492 | Msa0358280:CDS | 35.0% | |
| GTATGCAACTACTAGAAACA+CGG | - | chr3_1:43043586-43043605 | None:intergenic | 35.0% | |
| GGTTATTCATGTGAATATGC+AGG | + | chr3_1:43043651-43043670 | Msa0358280:intron | 35.0% | |
| ACGTAATTCTCATGTGAGAT+TGG | - | chr3_1:43043855-43043874 | None:intergenic | 35.0% | |
| AATCTCACATGAGAATTACG+TGG | + | chr3_1:43043854-43043873 | Msa0358280:exon | 35.0% | |
| CACTGCAACCATTAAATACA+AGG | - | chr3_1:43043988-43044007 | None:intergenic | 35.0% | |
| TAGTGCTTTGATGTTGTATC+AGG | + | chr3_1:43044048-43044067 | Msa0358280:three_prime_UTR | 35.0% | |
| CACCAAATCCCAGTAAAAGA+TGG | + | chr3_1:43039688-43039707 | Msa0358280:CDS | 40.0% | |
| CCAAATCCCAGTAAAAGATG+GGG | + | chr3_1:43039690-43039709 | Msa0358280:CDS | 40.0% | |
| AGAGAAAGAGAAAGCCAGAA+AGG | - | chr3_1:43039741-43039760 | None:intergenic | 40.0% | |
| !! | TTCTGGCTTTCTCTTTCTCT+TGG | + | chr3_1:43039741-43039760 | Msa0358280:CDS | 40.0% |
| TGTTCCATACAAGCTTTACG+AGG | + | chr3_1:43039770-43039789 | Msa0358280:CDS | 40.0% | |
| ! | CAAATTTTGCAGGCTGATAG+AGG | + | chr3_1:43040623-43040642 | Msa0358280:intron | 40.0% |
| ATTGCTGTATTGCATTGCAG+TGG | + | chr3_1:43040716-43040735 | Msa0358280:intron | 40.0% | |
| TTGCTGTATTGCATTGCAGT+GGG | + | chr3_1:43040717-43040736 | Msa0358280:intron | 40.0% | |
| ! | ATAATGGAACAAGCCCTTAC+TGG | + | chr3_1:43040867-43040886 | Msa0358280:intron | 40.0% |
| ! | AATGGCCAGTCTTGGTAATA+AGG | - | chr3_1:43040983-43041002 | None:intergenic | 40.0% |
| TTGAAACCGTGACAAACAAG+TGG | + | chr3_1:43041010-43041029 | Msa0358280:intron | 40.0% | |
| ACTCACGCAATTCATATGGT+CGG | - | chr3_1:43041203-43041222 | None:intergenic | 40.0% | |
| TGCGTGAGTTTATCCATTTG+AGG | + | chr3_1:43041214-43041233 | Msa0358280:intron | 40.0% | |
| ! | TCCATTTGAGGCATTCTTGA+TGG | + | chr3_1:43041226-43041245 | Msa0358280:intron | 40.0% |
| TCCATCAAGAATGCCTCAAA+TGG | - | chr3_1:43041230-43041249 | None:intergenic | 40.0% | |
| CAAAATGATTCTTCCCAGTC+AGG | + | chr3_1:43041253-43041272 | Msa0358280:intron | 40.0% | |
| TTGAAGAGTAAGACACCAGA+AGG | - | chr3_1:43041295-43041314 | None:intergenic | 40.0% | |
| AAGTCAAGACCCAAAACAGA+AGG | + | chr3_1:43041313-43041332 | Msa0358280:intron | 40.0% | |
| AGTCAAGACCCAAAACAGAA+GGG | + | chr3_1:43041314-43041333 | Msa0358280:intron | 40.0% | |
| ! | TTGAGCTTCCCTTCTGTTTT+GGG | - | chr3_1:43041325-43041344 | None:intergenic | 40.0% |
| TAACCCCTCCAACTAGAAAA+GGG | + | chr3_1:43041347-43041366 | Msa0358280:intron | 40.0% | |
| !!! | TATCCCCTTTTCTAGTTGGA+GGG | - | chr3_1:43041354-43041373 | None:intergenic | 40.0% |
| !!! | ATATCCCCTTTTCTAGTTGG+AGG | - | chr3_1:43041355-43041374 | None:intergenic | 40.0% |
| !! | GTCATATCCCCTTTTCTAGT+TGG | - | chr3_1:43041358-43041377 | None:intergenic | 40.0% |
| ! | CATGTACATGTTAGGTTGTG+AGG | - | chr3_1:43041628-43041647 | None:intergenic | 40.0% |
| AGAGGTAACTAATAGGTCCT+CGG | - | chr3_1:43041783-43041802 | None:intergenic | 40.0% | |
| GTGGTAACAAACCATTCTAC+TGG | + | chr3_1:43042056-43042075 | Msa0358280:intron | 40.0% | |
| !! | GACTGCAATCGATAGTTTTG+AGG | + | chr3_1:43042162-43042181 | Msa0358280:intron | 40.0% |
| ! | GCATTGAAGCTCAGATTTTC+TGG | - | chr3_1:43042283-43042302 | None:intergenic | 40.0% |
| TGATTGAACCTACCTTCAAG+TGG | + | chr3_1:43042986-43043005 | Msa0358280:intron | 40.0% | |
| ! | GGAGAAAGTACATCATCCAA+GGG | - | chr3_1:43043256-43043275 | None:intergenic | 40.0% |
| ! | TGGAGAAAGTACATCATCCA+AGG | - | chr3_1:43043257-43043276 | None:intergenic | 40.0% |
| ! | TGAGCTTCCCAATGTTTCTA+AGG | + | chr3_1:43043525-43043544 | Msa0358280:CDS | 40.0% |
| AGTTGCATACACGAGAAACA+CGG | + | chr3_1:43043596-43043615 | Msa0358280:intron | 40.0% | |
| CGTGGATAGAACTCAGAAAA+TGG | + | chr3_1:43043872-43043891 | Msa0358280:three_prime_UTR | 40.0% | |
| CTCAGAAAATGGAGACAGTA+TGG | + | chr3_1:43043883-43043902 | Msa0358280:three_prime_UTR | 40.0% | |
| !!! | TGGATTGTTTTGGTGTGTAG+CGG | - | chr3_1:43043911-43043930 | None:intergenic | 40.0% |
| !! | AAGCTAGAAGTTGGTGAAGC+TGG | - | chr3_1:43039660-43039679 | None:intergenic | 45.0% |
| !! | CTTCACCAACTTCTAGCTTG+TGG | + | chr3_1:43039661-43039680 | Msa0358280:CDS | 45.0% |
| GCTAACCACAAGCTAGAAGT+TGG | - | chr3_1:43039669-43039688 | None:intergenic | 45.0% | |
| ! | CCCCATCTTTTACTGGGATT+TGG | - | chr3_1:43039693-43039712 | None:intergenic | 45.0% |
| ! | AGTTCGCCCCATCTTTTACT+GGG | - | chr3_1:43039699-43039718 | None:intergenic | 45.0% |
| TCCTTCTCTACACTCCTTTC+TGG | + | chr3_1:43039724-43039743 | Msa0358280:CDS | 45.0% | |
| AGCATGGGAATGAGAAAAGC+AGG | - | chr3_1:43039934-43039953 | None:intergenic | 45.0% | |
| AGTATTCAGCAGGGTCTGTT+TGG | - | chr3_1:43040170-43040189 | None:intergenic | 45.0% | |
| !! | CATTCAAGTACTGGGTGTTG+AGG | - | chr3_1:43040432-43040451 | None:intergenic | 45.0% |
| TCCTACTGATCTTGTCAGTG+TGG | + | chr3_1:43040564-43040583 | Msa0358280:intron | 45.0% | |
| CCTACTGATCTTGTCAGTGT+GGG | + | chr3_1:43040565-43040584 | Msa0358280:intron | 45.0% | |
| ! | AGGCTGATAGAGGCATATCT+TGG | + | chr3_1:43040633-43040652 | Msa0358280:intron | 45.0% |
| ! | TGATAGAGGCATATCTTGGC+AGG | + | chr3_1:43040637-43040656 | Msa0358280:CDS | 45.0% |
| TATCTTGGCAGGACCGTTAT+TGG | + | chr3_1:43040648-43040667 | Msa0358280:CDS | 45.0% | |
| ATCTTGGCAGGACCGTTATT+GGG | + | chr3_1:43040649-43040668 | Msa0358280:CDS | 45.0% | |
| !! | TTGTCGACTAGTCTGAGACT+AGG | - | chr3_1:43040919-43040938 | None:intergenic | 45.0% |
| ! | TAGTCTCAGACTAGTCGACA+AGG | + | chr3_1:43040918-43040937 | Msa0358280:intron | 45.0% |
| ! | AGTCTCAGACTAGTCGACAA+GGG | + | chr3_1:43040919-43040938 | Msa0358280:intron | 45.0% |
| TGCACACCACTTGTTTGTCA+CGG | - | chr3_1:43041019-43041038 | None:intergenic | 45.0% | |
| CTCACGCAATTCATATGGTC+GGG | - | chr3_1:43041202-43041221 | None:intergenic | 45.0% | |
| ! | CTTGAGCTTCCCTTCTGTTT+TGG | - | chr3_1:43041326-43041345 | None:intergenic | 45.0% |
| CTAACCCCTCCAACTAGAAA+AGG | + | chr3_1:43041346-43041365 | Msa0358280:intron | 45.0% | |
| AACCCCTCCAACTAGAAAAG+GGG | + | chr3_1:43041348-43041367 | Msa0358280:intron | 45.0% | |
| !!! | ATCCCCTTTTCTAGTTGGAG+GGG | - | chr3_1:43041353-43041372 | None:intergenic | 45.0% |
| ! | TACATGTATTTGCTGCCGAC+AGG | + | chr3_1:43041642-43041661 | Msa0358280:intron | 45.0% |
| !! | TTATCCATAGACTGGCCTGT+CGG | - | chr3_1:43041660-43041679 | None:intergenic | 45.0% |
| TACCTCTTAGTCTCGTAGTG+AGG | + | chr3_1:43041796-43041815 | Msa0358280:intron | 45.0% | |
| !! | TTGCTCTATTTGTTGGTGGC+AGG | + | chr3_1:43041838-43041857 | Msa0358280:intron | 45.0% |
| GGAAACAAACATGAGTGAGC+AGG | - | chr3_1:43041880-43041899 | None:intergenic | 45.0% | |
| !! | ACATGACACTGCGTCGATTA+CGG | + | chr3_1:43041921-43041940 | Msa0358280:CDS | 45.0% |
| TGGAAATAGCTAACGTCTCC+AGG | - | chr3_1:43042030-43042049 | None:intergenic | 45.0% | |
| !! | GATTTTCTGGGCTAGGCTTT+GGG | - | chr3_1:43042270-43042289 | None:intergenic | 45.0% |
| !! | AGATTTTCTGGGCTAGGCTT+TGG | - | chr3_1:43042271-43042290 | None:intergenic | 45.0% |
| ! | AAGCTCAGATTTTCTGGGCT+AGG | - | chr3_1:43042277-43042296 | None:intergenic | 45.0% |
| TCCTATCTTCAAGTCTACCC+TGG | + | chr3_1:43042431-43042450 | Msa0358280:intron | 45.0% | |
| ACCAGGGTAGACTTGAAGAT+AGG | - | chr3_1:43042435-43042454 | None:intergenic | 45.0% | |
| ! | CTCCTGCTTCTTTTGTGCTA+TGG | + | chr3_1:43042902-43042921 | Msa0358280:intron | 45.0% |
| CTCCATAGCACAAAAGAAGC+AGG | - | chr3_1:43042907-43042926 | None:intergenic | 45.0% | |
| ATGAGAAGCCTGGCGATAAA+TGG | + | chr3_1:43043678-43043697 | Msa0358280:CDS | 45.0% | |
| TGAGAAGCCTGGCGATAAAT+GGG | + | chr3_1:43043679-43043698 | Msa0358280:CDS | 45.0% | |
| TAAATGGGACTTGCCAAGAG+TGG | + | chr3_1:43043694-43043713 | Msa0358280:CDS | 45.0% | |
| TGACTTATGGCGCATCTTTC+TGG | + | chr3_1:43043760-43043779 | Msa0358280:CDS | 45.0% | |
| GACTTATGGCGCATCTTTCT+GGG | + | chr3_1:43043761-43043780 | Msa0358280:CDS | 45.0% | |
| CTTTCTGGGTCCAATTGTTC+CGG | + | chr3_1:43043775-43043794 | Msa0358280:CDS | 45.0% | |
| !!! | CACTGTTTTGCTTCTGAGAC+CGG | - | chr3_1:43043797-43043816 | None:intergenic | 45.0% |
| GCAAAACAGTGTTCTCCAAC+AGG | + | chr3_1:43043806-43043825 | Msa0358280:CDS | 45.0% | |
| GAAAACCAGGGTAATCCTGT+TGG | - | chr3_1:43043824-43043843 | None:intergenic | 45.0% | |
| TTGGCGTGTGTTGAAAACCA+GGG | - | chr3_1:43043836-43043855 | None:intergenic | 45.0% | |
| ATTGGCGTGTGTTGAAAACC+AGG | - | chr3_1:43043837-43043856 | None:intergenic | 45.0% | |
| !! | TATGATTATTTAATATTTAT+TGG | + | chr3_1:43040814-43040833 | Msa0358280:intron | 5.0% |
| ! | GAGTTCGCCCCATCTTTTAC+TGG | - | chr3_1:43039700-43039719 | None:intergenic | 50.0% |
| ! | GCCAGAAAGGAGTGTAGAGA+AGG | - | chr3_1:43039728-43039747 | None:intergenic | 50.0% |
| ACCTTACCAACGAGCAGCAT+GGG | - | chr3_1:43039949-43039968 | None:intergenic | 50.0% | |
| TACCTTACCAACGAGCAGCA+TGG | - | chr3_1:43039950-43039969 | None:intergenic | 50.0% | |
| !! | GAATGTCGATTCTTCTGGGC+TGG | + | chr3_1:43040447-43040466 | Msa0358280:intron | 50.0% |
| CCCACACTGACAAGATCAGT+AGG | - | chr3_1:43040568-43040587 | None:intergenic | 50.0% | |
| ! | TTGTCAGTGTGGGCTGAGAA+TGG | + | chr3_1:43040575-43040594 | Msa0358280:intron | 50.0% |
| !! | GACTAGTCTGAGACTAGGAG+AGG | - | chr3_1:43040914-43040933 | None:intergenic | 50.0% |
| ! | GTCTCAGACTAGTCGACAAG+GGG | + | chr3_1:43040920-43040939 | Msa0358280:intron | 50.0% |
| AGCCTGTAGGACTTACCTTC+TGG | + | chr3_1:43041277-43041296 | Msa0358280:intron | 50.0% | |
| CACCAGAAGGTAAGTCCTAC+AGG | - | chr3_1:43041282-43041301 | None:intergenic | 50.0% | |
| AGCCTCACTACGAGACTAAG+AGG | - | chr3_1:43041801-43041820 | None:intergenic | 50.0% | |
| GTGAGCAGGAATGTTGTGTG+TGG | - | chr3_1:43041866-43041885 | None:intergenic | 50.0% | |
| !!! | GCGTCGATTACGGCATTTTC+TGG | + | chr3_1:43041931-43041950 | Msa0358280:CDS | 50.0% |
| !!! | GCAGCCCACCGAATTTTTTC+TGG | - | chr3_1:43041965-43041984 | None:intergenic | 50.0% |
| TGCAGGATTGATGAGAAGCC+TGG | + | chr3_1:43043668-43043687 | Msa0358280:intron | 50.0% | |
| ! | AGAGCATCAACAGCCACTCT+TGG | - | chr3_1:43043710-43043729 | None:intergenic | 50.0% |
| AAGAGTGGCTGTTGATGCTC+TGG | + | chr3_1:43043709-43043728 | Msa0358280:CDS | 50.0% | |
| AGAGTGGCTGTTGATGCTCT+GGG | + | chr3_1:43043710-43043729 | Msa0358280:CDS | 50.0% | |
| !! | GCTTCTGAGACCGGAACAAT+TGG | - | chr3_1:43043788-43043807 | None:intergenic | 50.0% |
| GTTCTCCAACAGGATTACCC+TGG | + | chr3_1:43043816-43043835 | Msa0358280:CDS | 50.0% | |
| CTCATTCCCATGCTGCTCGT+TGG | + | chr3_1:43039940-43039959 | Msa0358280:CDS | 55.0% | |
| TCCCATGCTGCTCGTTGGTA+AGG | + | chr3_1:43039945-43039964 | Msa0358280:CDS | 55.0% | |
| GCAGGACCGTTATTGGGTCA+AGG | + | chr3_1:43040655-43040674 | Msa0358280:CDS | 55.0% | |
| GAGCTGGGCATAGCCAGTAA+GGG | - | chr3_1:43040883-43040902 | None:intergenic | 55.0% | |
| TGAGCTGGGCATAGCCAGTA+AGG | - | chr3_1:43040884-43040903 | None:intergenic | 55.0% | |
| GGAGAGGTAACAGCTGAGCT+GGG | - | chr3_1:43040898-43040917 | None:intergenic | 55.0% | |
| AGGAGAGGTAACAGCTGAGC+TGG | - | chr3_1:43040899-43040918 | None:intergenic | 55.0% | |
| TTCCCAGTCAGGAAGCCTGT+AGG | + | chr3_1:43041264-43041283 | Msa0358280:intron | 55.0% | |
| GTCCTACAGGCTTCCTGACT+GGG | - | chr3_1:43041269-43041288 | None:intergenic | 55.0% | |
| AGTCCTACAGGCTTCCTGAC+TGG | - | chr3_1:43041270-43041289 | None:intergenic | 55.0% | |
| GGCAAGTCCCATTTATCGCC+AGG | - | chr3_1:43043689-43043708 | None:intergenic | 55.0% | |
| ! | TGCTCTGGGTGCTGCAATGC+TGG | + | chr3_1:43043724-43043743 | Msa0358280:CDS | 60.0% |
| GCTGCCGACAGGCCAGTCTA+TGG | + | chr3_1:43041653-43041672 | Msa0358280:intron | 65.0% | |
| !! | GGTGGGCTGCTGAAGCTGCA+TGG | + | chr3_1:43041975-43041994 | Msa0358280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 43039585 | 43044216 | 43039585 | ID=Msa0358280;Name=Msa0358280 |
| chr3_1 | mRNA | 43039585 | 43044216 | 43039585 | ID=Msa0358280-mRNA-1;Parent=Msa0358280;Name=Msa0358280-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.85|1|1|1|7|351|308 |
| chr3_1 | exon | 43039585 | 43039791 | 43039585 | ID=Msa0358280-mRNA-1:exon:7506;Parent=Msa0358280-mRNA-1 |
| chr3_1 | exon | 43039883 | 43039966 | 43039883 | ID=Msa0358280-mRNA-1:exon:7507;Parent=Msa0358280-mRNA-1 |
| chr3_1 | exon | 43040635 | 43040676 | 43040635 | ID=Msa0358280-mRNA-1:exon:7508;Parent=Msa0358280-mRNA-1 |
| chr3_1 | exon | 43041664 | 43041774 | 43041664 | ID=Msa0358280-mRNA-1:exon:7509;Parent=Msa0358280-mRNA-1 |
| chr3_1 | exon | 43041860 | 43042051 | 43041860 | ID=Msa0358280-mRNA-1:exon:7510;Parent=Msa0358280-mRNA-1 |
| chr3_1 | exon | 43043449 | 43043546 | 43043449 | ID=Msa0358280-mRNA-1:exon:7511;Parent=Msa0358280-mRNA-1 |
| chr3_1 | exon | 43043673 | 43044216 | 43043673 | ID=Msa0358280-mRNA-1:exon:7512;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43039585 | 43039791 | 43039585 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43039883 | 43039966 | 43039883 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43040635 | 43040676 | 43040635 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43041664 | 43041774 | 43041664 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43041860 | 43042051 | 43041860 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43043449 | 43043546 | 43043449 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | CDS | 43043673 | 43043865 | 43043673 | ID=Msa0358280-mRNA-1:cds;Parent=Msa0358280-mRNA-1 |
| chr3_1 | three_prime_UTR | 43043866 | 43044216 | 43043866 | ID=Msa0358280-mRNA-1:three_prime_utr;Parent=Msa0358280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
