Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451630 | sp|Q9LSB1|GUX1_ARATH | 65.732 | 642 | 187 | 8 | 72 | 684 | 17 | 654 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451630 | G7JBH4 | 96.075 | 637 | 13 | 2 | 60 | 684 | 1 | 637 | 0.0 | 1268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621160 | Msa1451630 | 0.963729 | 1.921621e-122 | -8.615850e-47 |
| Msa0193850 | Msa1451630 | 0.818316 | 2.088881e-52 | -8.615850e-47 |
| Msa0470220 | Msa1451630 | 0.951678 | 1.228367e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451630 | MtrunA17_Chr3g0129911 | 96.075 | 637 | 13 | 2 | 60 | 684 | 1 | 637 | 0.0 | 1268 |
| Msa1451630 | MtrunA17_Chr1g0159301 | 64.806 | 645 | 201 | 8 | 65 | 684 | 3 | 646 | 0.0 | 855 |
| Msa1451630 | MtrunA17_Chr1g0153481 | 47.835 | 485 | 218 | 10 | 187 | 640 | 108 | 588 | 2.04e-156 | 464 |
| Msa1451630 | MtrunA17_Chr1g0153471 | 45.181 | 498 | 243 | 11 | 169 | 640 | 91 | 584 | 4.61e-142 | 427 |
| Msa1451630 | MtrunA17_Chr1g0191821 | 44.708 | 463 | 208 | 8 | 216 | 643 | 102 | 551 | 4.29e-134 | 406 |
| Msa1451630 | MtrunA17_Chr7g0272921 | 39.057 | 530 | 261 | 11 | 163 | 646 | 48 | 561 | 5.70e-132 | 400 |
| Msa1451630 | MtrunA17_Chr1g0190421 | 35.802 | 162 | 103 | 1 | 353 | 514 | 27 | 187 | 8.92e-28 | 118 |
| Msa1451630 | MtrunA17_Chr7g0274421 | 35.119 | 168 | 108 | 1 | 347 | 514 | 30 | 196 | 1.60e-27 | 117 |
| Msa1451630 | MtrunA17_Chr7g0270281 | 28.079 | 203 | 107 | 3 | 350 | 513 | 23 | 225 | 5.19e-17 | 83.2 |
| Msa1451630 | MtrunA17_Chr1g0193011 | 27.481 | 262 | 134 | 9 | 346 | 563 | 16 | 265 | 6.13e-16 | 79.7 |
| Msa1451630 | MtrunA17_Chr4g0074911 | 35.043 | 117 | 73 | 1 | 349 | 462 | 20 | 136 | 2.05e-15 | 75.9 |
| Msa1451630 | MtrunA17_Chr5g0399211 | 28.000 | 175 | 111 | 5 | 351 | 513 | 50 | 221 | 2.45e-14 | 76.3 |
| Msa1451630 | MtrunA17_Chr4g0056181 | 26.163 | 172 | 118 | 4 | 351 | 513 | 37 | 208 | 1.40e-12 | 70.5 |
| Msa1451630 | MtrunA17_Chr7g0271581 | 24.016 | 254 | 139 | 7 | 353 | 563 | 43 | 285 | 1.50e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451630 | AT3G18660.2 | 65.732 | 642 | 187 | 8 | 72 | 684 | 17 | 654 | 0.0 | 859 |
| Msa1451630 | AT3G18660.1 | 65.265 | 642 | 186 | 8 | 72 | 684 | 17 | 650 | 0.0 | 851 |
| Msa1451630 | AT3G18660.3 | 65.109 | 642 | 186 | 8 | 72 | 684 | 17 | 649 | 0.0 | 849 |
| Msa1451630 | AT1G77130.1 | 61.452 | 620 | 190 | 11 | 64 | 660 | 1 | 594 | 0.0 | 756 |
| Msa1451630 | AT4G33330.5 | 49.794 | 486 | 210 | 11 | 187 | 643 | 43 | 523 | 5.31e-162 | 477 |
| Msa1451630 | AT4G33330.1 | 49.794 | 486 | 210 | 11 | 187 | 643 | 111 | 591 | 4.13e-161 | 477 |
| Msa1451630 | AT4G33330.4 | 49.794 | 486 | 210 | 11 | 187 | 643 | 122 | 602 | 7.61e-161 | 476 |
| Msa1451630 | AT4G33330.2 | 49.693 | 489 | 212 | 11 | 187 | 646 | 111 | 594 | 1.22e-160 | 477 |
| Msa1451630 | AT1G08990.1 | 43.673 | 490 | 235 | 10 | 187 | 642 | 79 | 561 | 6.68e-135 | 409 |
| Msa1451630 | AT1G54940.1 | 44.219 | 493 | 220 | 13 | 187 | 640 | 74 | 550 | 5.23e-130 | 395 |
| Msa1451630 | AT4G33330.3 | 48.571 | 350 | 147 | 10 | 187 | 507 | 122 | 467 | 1.08e-98 | 311 |
| Msa1451630 | AT5G18480.1 | 36.095 | 169 | 107 | 1 | 345 | 513 | 24 | 191 | 1.87e-29 | 123 |
| Msa1451630 | AT1G60470.1 | 25.987 | 304 | 161 | 10 | 337 | 595 | 9 | 293 | 1.10e-17 | 85.5 |
| Msa1451630 | AT1G60450.1 | 27.053 | 207 | 110 | 3 | 348 | 513 | 15 | 221 | 2.51e-16 | 81.3 |
| Msa1451630 | AT1G56600.1 | 26.357 | 258 | 133 | 7 | 351 | 563 | 21 | 266 | 7.46e-16 | 79.7 |
| Msa1451630 | AT1G09350.1 | 26.108 | 203 | 110 | 3 | 351 | 513 | 15 | 217 | 1.95e-15 | 78.6 |
| Msa1451630 | AT4G26250.1 | 25.806 | 217 | 120 | 4 | 351 | 526 | 24 | 240 | 2.15e-15 | 78.6 |
| Msa1451630 | AT5G30500.2 | 25.123 | 203 | 112 | 3 | 348 | 510 | 21 | 223 | 2.60e-14 | 73.6 |
| Msa1451630 | AT5G30500.1 | 32.203 | 118 | 77 | 1 | 348 | 462 | 21 | 138 | 1.90e-13 | 72.4 |
| Msa1451630 | AT2G47180.1 | 34.211 | 114 | 72 | 1 | 353 | 463 | 31 | 144 | 3.07e-13 | 72.0 |
| Msa1451630 | AT4G16600.1 | 25.989 | 177 | 114 | 6 | 351 | 514 | 58 | 230 | 2.23e-11 | 67.4 |
| Msa1451630 | AT2G35710.4 | 23.810 | 210 | 145 | 5 | 317 | 514 | 28 | 234 | 2.48e-11 | 65.9 |
| Msa1451630 | AT2G35710.1 | 23.810 | 210 | 145 | 5 | 317 | 514 | 28 | 234 | 9.48e-11 | 65.1 |
Find 152 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACAATATCGATTCATTT+AGG | 0.151662 | tig0033518:-34748 | None:intergenic |
| CTCTATGTGCTTCACTATTT+AGG | 0.175807 | tig0033518:+34148 | Msa1451630:CDS |
| GGTAATGAAGAGCACATAAA+TGG | 0.238422 | tig0033518:-33213 | None:intergenic |
| TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | tig0033518:+34173 | Msa1451630:CDS |
| TCTTCCTCATCAATCCATTC+TGG | 0.258883 | tig0033518:-33011 | None:intergenic |
| TTGCACTAGAGCCTGTTAAA+TGG | 0.289954 | tig0033518:-32552 | None:intergenic |
| TACAATACCACCCATTTAAC+AGG | 0.292959 | tig0033518:+32541 | Msa1451630:CDS |
| TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | tig0033518:+33572 | Msa1451630:CDS |
| TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | tig0033518:-33878 | None:intergenic |
| TGCATCTTAAGTTTCTATCT+TGG | 0.305792 | tig0033518:-32441 | None:intergenic |
| CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | tig0033518:-34309 | None:intergenic |
| AATGGAATTACAGCAAATTC+AGG | 0.311462 | tig0033518:+33768 | Msa1451630:CDS |
| TTGTATGACTCTCTGGTGTT+TGG | 0.314890 | tig0033518:+34764 | Msa1451630:three_prime_UTR |
| TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | tig0033518:-33311 | None:intergenic |
| ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | tig0033518:-33264 | None:intergenic |
| TTTGTTGTGAAACTTATAAT+AGG | 0.339384 | tig0033518:-34579 | None:intergenic |
| ATACAATATCGATTCATTTA+GGG | 0.346571 | tig0033518:-34747 | None:intergenic |
| TATGCCGATCCCATCTCTAA+TGG | 0.351875 | tig0033518:-34613 | None:intergenic |
| GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | tig0033518:+34447 | Msa1451630:CDS |
| TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | tig0033518:-33251 | None:intergenic |
| CATTACAAAAGTGGCGGAAA+TGG | 0.368832 | tig0033518:-32497 | None:intergenic |
| CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | tig0033518:-33245 | None:intergenic |
| TGTATGACTCTCTGGTGTTT+GGG | 0.383721 | tig0033518:+34765 | Msa1451630:three_prime_UTR |
| GAATTAATTGATAGCATTGT+TGG | 0.389069 | tig0033518:-30583 | None:intergenic |
| ATCAAATGTAGATACTGATT+GGG | 0.390328 | tig0033518:+32812 | Msa1451630:CDS |
| AATTAATTGATAGCATTGTT+GGG | 0.402805 | tig0033518:-30582 | None:intergenic |
| TATCAAATGTAGATACTGAT+TGG | 0.406559 | tig0033518:+32811 | Msa1451630:CDS |
| TCAGGGACTATGATTGTAAC+TGG | 0.408838 | tig0033518:+34191 | Msa1451630:CDS |
| AATGTGCAACAATCATAAAC+TGG | 0.410467 | tig0033518:+34817 | Msa1451630:three_prime_UTR |
| GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | tig0033518:+34446 | Msa1451630:CDS |
| TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | tig0033518:-33597 | None:intergenic |
| CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | tig0033518:+33117 | Msa1451630:CDS |
| GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | tig0033518:+34461 | Msa1451630:CDS |
| ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | tig0033518:-33542 | None:intergenic |
| GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | tig0033518:-34287 | None:intergenic |
| CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | tig0033518:-33993 | None:intergenic |
| TGGCGGAAATGGTTATCAAT+AGG | 0.431528 | tig0033518:-32486 | None:intergenic |
| TGGATATCACAGAAGCGGTT+TGG | 0.440256 | tig0033518:+33673 | Msa1451630:CDS |
| TGCACTAGAGCCTGTTAAAT+GGG | 0.445408 | tig0033518:-32551 | None:intergenic |
| ATGCCGATCCCATCTCTAAT+GGG | 0.445955 | tig0033518:-34612 | None:intergenic |
| TGGGTGGTATTGTAAATCTC+TGG | 0.456085 | tig0033518:-32532 | None:intergenic |
| CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | tig0033518:-33047 | None:intergenic |
| ATCGATATTGTATGACTCTC+TGG | 0.458383 | tig0033518:+34757 | Msa1451630:three_prime_UTR |
| ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | tig0033518:+34161 | Msa1451630:CDS |
| GAATGTGAAGAAGGTGATGT+AGG | 0.462933 | tig0033518:-30605 | None:intergenic |
| GTAATGAAGAGCACATAAAT+GGG | 0.464788 | tig0033518:-33212 | None:intergenic |
| ACAACACTGAGATATCTAAC+TGG | 0.465253 | tig0033518:+32907 | Msa1451630:CDS |
| TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | tig0033518:-34052 | None:intergenic |
| CAAATGAAAACCATGTTGTT+TGG | 0.468309 | tig0033518:+34109 | Msa1451630:CDS |
| GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | tig0033518:+34318 | Msa1451630:CDS |
| CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | tig0033518:+33062 | Msa1451630:CDS |
| AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | tig0033518:-33941 | None:intergenic |
| CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | tig0033518:-34286 | None:intergenic |
| TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | tig0033518:-34142 | None:intergenic |
| CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | tig0033518:-33116 | None:intergenic |
| AAGAAAGAGGAATGTGAAGA+AGG | 0.480068 | tig0033518:-30614 | None:intergenic |
| GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | tig0033518:+33107 | Msa1451630:CDS |
| TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | tig0033518:+33053 | Msa1451630:CDS |
| CTGAATATGAGAGGAACAAT+GGG | 0.489156 | tig0033518:+30908 | Msa1451630:CDS |
| GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | tig0033518:+34174 | Msa1451630:CDS |
| GCACAAAGCATAAGAATGTC+AGG | 0.490485 | tig0033518:+33608 | Msa1451630:CDS |
| GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | tig0033518:-33056 | None:intergenic |
| TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | tig0033518:+33260 | Msa1451630:CDS |
| GCAAGTTCACATGATCCAAC+TGG | 0.492733 | tig0033518:-33347 | None:intergenic |
| GGAAAACAATATACCGATTG+AGG | 0.497061 | tig0033518:-30685 | None:intergenic |
| TCTCATTTATATGATCCATC+AGG | 0.500815 | tig0033518:-33964 | None:intergenic |
| ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | tig0033518:-34505 | None:intergenic |
| ATATTTCATTCAAATACCCT+TGG | 0.517914 | tig0033518:-34009 | None:intergenic |
| AAATTGTGAAGGAAGTTACT+TGG | 0.522554 | tig0033518:+30530 | Msa1451630:CDS |
| TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | tig0033518:-33184 | None:intergenic |
| AGCACCACGTACACCTCAAT+CGG | 0.523813 | tig0033518:+30672 | Msa1451630:CDS |
| TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | tig0033518:-34354 | None:intergenic |
| AAATATTTACATGGTGGCAC+AGG | 0.525162 | tig0033518:+34026 | Msa1451630:CDS |
| TAAGGAACTGACATGGATGA+AGG | 0.528957 | tig0033518:-30968 | None:intergenic |
| CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | tig0033518:+33949 | Msa1451630:CDS |
| CACAGATAGAAACAAGAAAG+AGG | 0.530154 | tig0033518:-30627 | None:intergenic |
| ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | tig0033518:+33774 | Msa1451630:CDS |
| AACATACCTCTGCCTCTCAT+AGG | 0.531287 | tig0033518:-33374 | None:intergenic |
| GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | tig0033518:+32997 | Msa1451630:CDS |
| GTATAGATAATCTTTGTGAC+TGG | 0.535311 | tig0033518:+34425 | Msa1451630:CDS |
| GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | tig0033518:+34384 | Msa1451630:CDS |
| GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | tig0033518:-33192 | None:intergenic |
| TCCTACAATGGAGGGGACCA+AGG | 0.538011 | tig0033518:+33992 | Msa1451630:CDS |
| ATGCAGATTTACTCATACTC+AGG | 0.538087 | tig0033518:+33831 | Msa1451630:CDS |
| ATTTGAATGAAATATTTACA+TGG | 0.539540 | tig0033518:+34017 | Msa1451630:CDS |
| GAAATAGCAAACTACACAGA+TGG | 0.541544 | tig0033518:+34361 | Msa1451630:CDS |
| ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | tig0033518:-33234 | None:intergenic |
| ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | tig0033518:+33875 | Msa1451630:CDS |
| TGAAGCACATAGAGAATTGG+TGG | 0.546520 | tig0033518:-34139 | None:intergenic |
| TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | tig0033518:+33279 | Msa1451630:CDS |
| AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | tig0033518:+33683 | Msa1451630:CDS |
| AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | tig0033518:+34323 | Msa1451630:CDS |
| TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | tig0033518:+33691 | Msa1451630:CDS |
| TGAAGATTTATACAAGAGAA+AGG | 0.550106 | tig0033518:+32369 | Msa1451630:CDS |
| TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | tig0033518:+32784 | Msa1451630:CDS |
| TCTCATCAACAAGTATTACT+AGG | 0.558372 | tig0033518:-33643 | None:intergenic |
| GTACCAGGAGATCCGAGACT+TGG | 0.558725 | tig0033518:-33065 | None:intergenic |
| ATTAATTGATAGCATTGTTG+GGG | 0.561261 | tig0033518:-30581 | None:intergenic |
| AGATTGAGTCCTACAATGGA+GGG | 0.566288 | tig0033518:+33984 | Msa1451630:CDS |
| CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | tig0033518:+34309 | Msa1451630:CDS |
| GCTGAATATGAGAGGAACAA+TGG | 0.571145 | tig0033518:+30907 | Msa1451630:intron |
| GTAGAGGAACATTACAAAAG+TGG | 0.573234 | tig0033518:-32506 | None:intergenic |
| TATCCCATTAGAGATGGGAT+CGG | 0.576473 | tig0033518:+34609 | Msa1451630:three_prime_UTR |
| GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | tig0033518:+33182 | Msa1451630:CDS |
| ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | tig0033518:-33055 | None:intergenic |
| TCTTGGATAGATAAGTTGAA+AGG | 0.588178 | tig0033518:-32424 | None:intergenic |
| GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | tig0033518:+34324 | Msa1451630:CDS |
| AACGCAGAACTGGTTTACAA+TGG | 0.591344 | tig0033518:+33512 | Msa1451630:intron |
| GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | tig0033518:+33368 | Msa1451630:CDS |
| CAAACTACACAGATGGGCAC+TGG | 0.597035 | tig0033518:+34368 | Msa1451630:CDS |
| AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | tig0033518:+33269 | Msa1451630:CDS |
| GAGATTGAGTCCTACAATGG+AGG | 0.602635 | tig0033518:+33983 | Msa1451630:CDS |
| ATTTAACAGGCTCTAGTGCA+AGG | 0.604649 | tig0033518:+32554 | Msa1451630:CDS |
| AAATAGCAAACTACACAGAT+GGG | 0.605901 | tig0033518:+34362 | Msa1451630:CDS |
| TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | tig0033518:-33552 | None:intergenic |
| AATGAGATTGAGTCCTACAA+TGG | 0.611979 | tig0033518:+33980 | Msa1451630:CDS |
| GTGAACAGGTGGATATGGGG+TGG | 0.612033 | tig0033518:+32771 | Msa1451630:intron |
| AAGAGATGACATGGTAACTG+TGG | 0.612180 | tig0033518:-34515 | None:intergenic |
| TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | tig0033518:+32977 | Msa1451630:intron |
| TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | tig0033518:-34524 | None:intergenic |
| ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | tig0033518:-33080 | None:intergenic |
| AGAGATGACATGGTAACTGT+GGG | 0.623896 | tig0033518:-34514 | None:intergenic |
| TGGCTCAGCACCAAACAACA+TGG | 0.624342 | tig0033518:-34119 | None:intergenic |
| ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | tig0033518:+32976 | Msa1451630:intron |
| ATATCCAGAATGGATTGATG+AGG | 0.627762 | tig0033518:+33007 | Msa1451630:CDS |
| AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | tig0033518:+34448 | Msa1451630:CDS |
| ATCAGTGGATATCACAGAAG+CGG | 0.632224 | tig0033518:+33668 | Msa1451630:CDS |
| CTTGTTGATGAGACAATCAG+TGG | 0.634716 | tig0033518:+33653 | Msa1451630:CDS |
| TTTGTGAACAGGTGGATATG+GGG | 0.635856 | tig0033518:+32768 | Msa1451630:intron |
| TGTAAATCTCTGGAGAGTAG+AGG | 0.638062 | tig0033518:-32522 | None:intergenic |
| TGAATGAAATATTTACATGG+TGG | 0.649910 | tig0033518:+34020 | Msa1451630:CDS |
| CCTACAATGGAGGGGACCAA+GGG | 0.651743 | tig0033518:+33993 | Msa1451630:CDS |
| GCTCTGTAGCTGAATATGAG+AGG | 0.662782 | tig0033518:+30899 | Msa1451630:intron |
| GAGGAACATTACAAAAGTGG+CGG | 0.663674 | tig0033518:-32503 | None:intergenic |
| TCAAATGTAGATACTGATTG+GGG | 0.666900 | tig0033518:+32813 | Msa1451630:CDS |
| ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | tig0033518:+34245 | Msa1451630:CDS |
| AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | tig0033518:+34249 | Msa1451630:CDS |
| GATTGAGTCCTACAATGGAG+GGG | 0.670790 | tig0033518:+33985 | Msa1451630:CDS |
| GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | tig0033518:+33684 | Msa1451630:CDS |
| GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | tig0033518:+33687 | Msa1451630:CDS |
| GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | tig0033518:+34440 | Msa1451630:CDS |
| ACTAGAGCCTGTTAAATGGG+TGG | 0.681890 | tig0033518:-32548 | None:intergenic |
| TATACCGATTGAGGTGTACG+TGG | 0.689087 | tig0033518:-30676 | None:intergenic |
| TAATGAAGAGCACATAAATG+GGG | 0.692136 | tig0033518:-33211 | None:intergenic |
| GAACTTGCACTTCCTATGAG+AGG | 0.692338 | tig0033518:+33362 | Msa1451630:CDS |
| TAGATGTAGAGCAACATGTG+TGG | 0.702518 | tig0033518:-32949 | None:intergenic |
| TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | tig0033518:-34178 | None:intergenic |
| TCTACATTTGATATGTACCG+AGG | 0.712296 | tig0033518:-32801 | None:intergenic |
| AGTCTAGCTTCAACAGAACG+AGG | 0.720197 | tig0033518:-30938 | None:intergenic |
| GATGACATGGTAACTGTGGG+AGG | 0.721623 | tig0033518:-34511 | None:intergenic |
| GTGATGTAGCACATGCAAAG+TGG | 0.727257 | tig0033518:+34242 | Msa1451630:CDS |
| GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | tig0033518:+34339 | Msa1451630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTTTATTGTTAAAAA+TGG | + | tig0033518:34676-34695 | Msa1451630:three_prime_UTR | 10.0% |
| !! | TATTGAAAACTAAATTAAAC+TGG | - | tig0033518:30787-30806 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGAAAGAAA+AGG | - | tig0033518:31020-31039 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTATATATGGA+TGG | - | tig0033518:31452-31471 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAACTCATTAT+TGG | - | tig0033518:31505-31524 | None:intergenic | 15.0% |
| !! | ATCAGTATTCAATATTAAAA+AGG | + | tig0033518:31554-31573 | Msa1451630:intron | 15.0% |
| !!! | TAAATTATTTGTTATGAACA+AGG | - | tig0033518:31622-31641 | None:intergenic | 15.0% |
| !!! | GTTTTGTAAATTAATATAGT+TGG | - | tig0033518:32059-32078 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAATGAATTTCA+AGG | + | tig0033518:32864-32883 | Msa1451630:CDS | 15.0% |
| !! | ATTTGAATGAAATATTTACA+TGG | + | tig0033518:34017-34036 | Msa1451630:CDS | 15.0% |
| !!! | AATTAATTGATAGCATTGTT+GGG | - | tig0033518:30585-30604 | None:intergenic | 20.0% |
| !! | AACTATGAAGAAGAAAATTA+AGG | - | tig0033518:30989-31008 | None:intergenic | 20.0% |
| !! | ATGATAATCATCATAAAATC+AGG | + | tig0033518:31036-31055 | Msa1451630:intron | 20.0% |
| !!! | TCCAATAGTCATTTATTTTT+AGG | + | tig0033518:31106-31125 | Msa1451630:intron | 20.0% |
| !! | TCCTAAAAATAAATGACTAT+TGG | - | tig0033518:31110-31129 | None:intergenic | 20.0% |
| !! | TACAATTACAATGTAATTAC+TGG | + | tig0033518:31314-31333 | Msa1451630:intron | 20.0% |
| !!! | AGTTTTGTAAAAAATGTATC+TGG | + | tig0033518:31511-31530 | Msa1451630:intron | 20.0% |
| !! | TAAAAAATGTATCTGGTAAA+AGG | + | tig0033518:31518-31537 | Msa1451630:intron | 20.0% |
| !! | AAATAAACACATATAATCAG+TGG | + | tig0033518:31962-31981 | Msa1451630:intron | 20.0% |
| !! | AAAAAAATTCACCAAACAAT+TGG | - | tig0033518:32298-32317 | None:intergenic | 20.0% |
| !! | ATTTAATGAGAAAAACATGA+TGG | - | tig0033518:33459-33478 | None:intergenic | 20.0% |
| !!! | TTTGTTGTGAAACTTATAAT+AGG | - | tig0033518:34582-34601 | None:intergenic | 20.0% |
| !! | CATAAGAAAAAATGGATAAA+GGG | + | tig0033518:34632-34651 | Msa1451630:three_prime_UTR | 20.0% |
| !! | AACAATAAAAAATGTGTACA+CGG | - | tig0033518:34671-34690 | None:intergenic | 20.0% |
| !!! | TCTGATAATTCAATTTTTGA+GGG | + | tig0033518:34720-34739 | Msa1451630:three_prime_UTR | 20.0% |
| !!! | ATACAATATCGATTCATTTA+GGG | - | tig0033518:34750-34769 | None:intergenic | 20.0% |
| !! | ATTAATTGATAGCATTGTTG+GGG | - | tig0033518:30584-30603 | None:intergenic | 25.0% |
| !! | GAATTAATTGATAGCATTGT+TGG | - | tig0033518:30586-30605 | None:intergenic | 25.0% |
| ! | ACACAACACAATATGTATAA+TGG | - | tig0033518:30709-30728 | None:intergenic | 25.0% |
| !! | ATACTTGAAGATGATTTTCT+AGG | + | tig0033518:30757-30776 | Msa1451630:intron | 25.0% |
| !! | TACTTGAAGATGATTTTCTA+GGG | + | tig0033518:30758-30777 | Msa1451630:intron | 25.0% |
| ! | AGGAAAGAAACAAAATGAAA+TGG | - | tig0033518:30820-30839 | None:intergenic | 25.0% |
| !! | AGTTTAATAAATGCATCGAT+AGG | - | tig0033518:30840-30859 | None:intergenic | 25.0% |
| ! | ATCGATGCATTTATTAAACT+TGG | + | tig0033518:30840-30859 | Msa1451630:intron | 25.0% |
| ! | TTAGGACTAAAATTATCACA+AGG | + | tig0033518:31124-31143 | Msa1451630:intron | 25.0% |
| ! | AAGTCAAGTTTCATAAATGA+TGG | + | tig0033518:31170-31189 | Msa1451630:intron | 25.0% |
| ! | TGTATACTTCAAATCCTATT+AGG | - | tig0033518:31733-31752 | None:intergenic | 25.0% |
| !! | TATTTCTTGTTTACATTCGA+AGG | + | tig0033518:31876-31895 | Msa1451630:intron | 25.0% |
| ! | TTATGTCCTTACATAAATGT+TGG | - | tig0033518:32215-32234 | None:intergenic | 25.0% |
| ! | AATGTGTTTCATTAATAACG+AGG | + | tig0033518:32341-32360 | Msa1451630:intron | 25.0% |
| ! | TGAAGATTTATACAAGAGAA+AGG | + | tig0033518:32369-32388 | Msa1451630:CDS | 25.0% |
| ! | ATCATGAAACTTATGAAACT+GGG | + | tig0033518:32610-32629 | Msa1451630:intron | 25.0% |
| ! | TATCAAATGTAGATACTGAT+TGG | + | tig0033518:32811-32830 | Msa1451630:CDS | 25.0% |
| !! | ATCAAATGTAGATACTGATT+GGG | + | tig0033518:32812-32831 | Msa1451630:CDS | 25.0% |
| ! | AAAAATGAATTTCAAGGCAT+TGG | + | tig0033518:32870-32889 | Msa1451630:CDS | 25.0% |
| ! | AAAAAGATGCTTACAATGAA+TGG | + | tig0033518:33750-33769 | Msa1451630:CDS | 25.0% |
| !! | AGGAACATAGATTTTCTATT+TGG | + | tig0033518:33851-33870 | Msa1451630:CDS | 25.0% |
| !! | GGAACATAGATTTTCTATTT+GGG | + | tig0033518:33852-33871 | Msa1451630:CDS | 25.0% |
| ! | ATATTTCATTCAAATACCCT+TGG | - | tig0033518:34012-34031 | None:intergenic | 25.0% |
| ! | TGAATGAAATATTTACATGG+TGG | + | tig0033518:34020-34039 | Msa1451630:CDS | 25.0% |
| !! | AAATTTTATCCCATTAGAGA+TGG | + | tig0033518:34603-34622 | Msa1451630:three_prime_UTR | 25.0% |
| !! | AATTTTATCCCATTAGAGAT+GGG | + | tig0033518:34604-34623 | Msa1451630:three_prime_UTR | 25.0% |
| ! | GCATAAGAAAAAATGGATAA+AGG | + | tig0033518:34631-34650 | Msa1451630:three_prime_UTR | 25.0% |
| !! | CTCTGATAATTCAATTTTTG+AGG | + | tig0033518:34719-34738 | Msa1451630:three_prime_UTR | 25.0% |
| !!! | CATACAATATCGATTCATTT+AGG | - | tig0033518:34751-34770 | None:intergenic | 25.0% |
| AAATTGTGAAGGAAGTTACT+TGG | + | tig0033518:30530-30549 | Msa1451630:CDS | 30.0% | |
| ! | ACTTGAAGATGATTTTCTAG+GGG | + | tig0033518:30759-30778 | Msa1451630:intron | 30.0% |
| AGAAAATTAAGGAACTGACA+TGG | - | tig0033518:30978-30997 | None:intergenic | 30.0% | |
| ! | GCATTTAGACTCTTTAGAAA+AGG | - | tig0033518:31228-31247 | None:intergenic | 30.0% |
| TAAGAACGTTTAATACGTTG+AGG | - | tig0033518:31296-31315 | None:intergenic | 30.0% | |
| GTATGTGTTAGATAGCTATA+AGG | - | tig0033518:31652-31671 | None:intergenic | 30.0% | |
| ! | AATCATTTTCAAACCACATG+AGG | + | tig0033518:31769-31788 | Msa1451630:intron | 30.0% |
| ! | ATCATTTTCAAACCACATGA+GGG | + | tig0033518:31770-31789 | Msa1451630:intron | 30.0% |
| ATATGATACGGATCACAATT+GGG | - | tig0033518:31810-31829 | None:intergenic | 30.0% | |
| TATATGATACGGATCACAAT+TGG | - | tig0033518:31811-31830 | None:intergenic | 30.0% | |
| TCATTTAGAAAAGACAGGAA+GGG | - | tig0033518:31834-31853 | None:intergenic | 30.0% | |
| ! | ACGTATATTTTGCATGATGT+TGG | + | tig0033518:32162-32181 | Msa1451630:intron | 30.0% |
| CAAACTCCAACATTTATGTA+AGG | + | tig0033518:32206-32225 | Msa1451630:intron | 30.0% | |
| TATCTGCAAATCCAATTGTT+TGG | + | tig0033518:32284-32303 | Msa1451630:intron | 30.0% | |
| ! | TCTTGGATAGATAAGTTGAA+AGG | - | tig0033518:32427-32446 | None:intergenic | 30.0% |
| TGCATCTTAAGTTTCTATCT+TGG | - | tig0033518:32444-32463 | None:intergenic | 30.0% | |
| CATCATGAAACTTATGAAAC+TGG | + | tig0033518:32609-32628 | Msa1451630:intron | 30.0% | |
| TCATGAAACTTATGAAACTG+GGG | + | tig0033518:32611-32630 | Msa1451630:intron | 30.0% | |
| GAGAACAAGTACTAAAATAG+TGG | - | tig0033518:32708-32727 | None:intergenic | 30.0% | |
| ! | TCAAATGTAGATACTGATTG+GGG | + | tig0033518:32813-32832 | Msa1451630:CDS | 30.0% |
| ! | TAATGAAGAGCACATAAATG+GGG | - | tig0033518:33214-33233 | None:intergenic | 30.0% |
| ! | GTAATGAAGAGCACATAAAT+GGG | - | tig0033518:33215-33234 | None:intergenic | 30.0% |
| ! | ATTTGGTATTGGAAAACAGT+TGG | - | tig0033518:33237-33256 | None:intergenic | 30.0% |
| ! | TTTTCTTGTCGCAAAATTGA+TGG | + | tig0033518:33479-33498 | Msa1451630:intron | 30.0% |
| TCTCATCAACAAGTATTACT+AGG | - | tig0033518:33646-33665 | None:intergenic | 30.0% | |
| !!! | TAAGCATCTTTTTCAGCTTT+GGG | - | tig0033518:33743-33762 | None:intergenic | 30.0% |
| AATGGAATTACAGCAAATTC+AGG | + | tig0033518:33768-33787 | Msa1451630:CDS | 30.0% | |
| TCTCATTTATATGATCCATC+AGG | - | tig0033518:33967-33986 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCATATGTCT+TGG | - | tig0033518:34055-34074 | None:intergenic | 30.0% | |
| !! | TGAACTTCTTGAAGCATTTT+TGG | + | tig0033518:34062-34081 | Msa1451630:CDS | 30.0% |
| !! | GAACTTCTTGAAGCATTTTT+GGG | + | tig0033518:34063-34082 | Msa1451630:CDS | 30.0% |
| CAAATGAAAACCATGTTGTT+TGG | + | tig0033518:34109-34128 | Msa1451630:CDS | 30.0% | |
| CAAAACTGTTGTAAAAGCTT+GGG | - | tig0033518:34289-34308 | None:intergenic | 30.0% | |
| AAATAGCAAACTACACAGAT+GGG | + | tig0033518:34362-34381 | Msa1451630:CDS | 30.0% | |
| GTATAGATAATCTTTGTGAC+TGG | + | tig0033518:34425-34444 | Msa1451630:CDS | 30.0% | |
| AGAAAAAATGGATAAAGGGA+AGG | + | tig0033518:34636-34655 | Msa1451630:three_prime_UTR | 30.0% | |
| AATGTGCAACAATCATAAAC+TGG | + | tig0033518:34817-34836 | Msa1451630:three_prime_UTR | 30.0% | |
| AAGAAAGAGGAATGTGAAGA+AGG | - | tig0033518:30617-30636 | None:intergenic | 35.0% | |
| CACAGATAGAAACAAGAAAG+AGG | - | tig0033518:30630-30649 | None:intergenic | 35.0% | |
| ! | GGAAAACAATATACCGATTG+AGG | - | tig0033518:30688-30707 | None:intergenic | 35.0% |
| CTGAATATGAGAGGAACAAT+GGG | + | tig0033518:30908-30927 | Msa1451630:CDS | 35.0% | |
| ! | TCATTTTCAAACCACATGAG+GGG | + | tig0033518:31771-31790 | Msa1451630:intron | 35.0% |
| GTCATTTAGAAAAGACAGGA+AGG | - | tig0033518:31835-31854 | None:intergenic | 35.0% | |
| ! | CGTTGTCATTTAGAAAAGAC+AGG | - | tig0033518:31839-31858 | None:intergenic | 35.0% |
| AGTAGATGAGCAGCATTATT+AGG | + | tig0033518:32031-32050 | Msa1451630:intron | 35.0% | |
| GTAGATGAGCAGCATTATTA+GGG | + | tig0033518:32032-32051 | Msa1451630:intron | 35.0% | |
| AAGACAAGTGACATGCATTT+AGG | + | tig0033518:32247-32266 | Msa1451630:intron | 35.0% | |
| GTAGAGGAACATTACAAAAG+TGG | - | tig0033518:32509-32528 | None:intergenic | 35.0% | |
| TACAATACCACCCATTTAAC+AGG | + | tig0033518:32541-32560 | Msa1451630:CDS | 35.0% | |
| CATGAAACTTATGAAACTGG+GGG | + | tig0033518:32612-32631 | Msa1451630:intron | 35.0% | |
| ACTTGTTCTCTTCTTAGCAT+AGG | + | tig0033518:32718-32737 | Msa1451630:intron | 35.0% | |
| CTTGTTCTCTTCTTAGCATA+GGG | + | tig0033518:32719-32738 | Msa1451630:intron | 35.0% | |
| TTGTTCTCTTCTTAGCATAG+GGG | + | tig0033518:32720-32739 | Msa1451630:intron | 35.0% | |
| ! | ATCTGTGCAATTTTGTGAAC+AGG | + | tig0033518:32757-32776 | Msa1451630:intron | 35.0% |
| ! | ATTTTGTGAACAGGTGGATA+TGG | + | tig0033518:32766-32785 | Msa1451630:intron | 35.0% |
| ! | TTTTGTGAACAGGTGGATAT+GGG | + | tig0033518:32767-32786 | Msa1451630:intron | 35.0% |
| TCTACATTTGATATGTACCG+AGG | - | tig0033518:32804-32823 | None:intergenic | 35.0% | |
| ACAACACTGAGATATCTAAC+TGG | + | tig0033518:32907-32926 | Msa1451630:CDS | 35.0% | |
| !! | ATATCCAGAATGGATTGATG+AGG | + | tig0033518:33007-33026 | Msa1451630:CDS | 35.0% |
| GTTAAGCTACCTTGTAAGAA+TGG | + | tig0033518:33107-33126 | Msa1451630:CDS | 35.0% | |
| ! | GGTAATGAAGAGCACATAAA+TGG | - | tig0033518:33216-33235 | None:intergenic | 35.0% |
| ! | CAGGTAAACAGATTTGGTAT+TGG | - | tig0033518:33248-33267 | None:intergenic | 35.0% |
| TCTTTGCAGGTAAACAGATT+TGG | - | tig0033518:33254-33273 | None:intergenic | 35.0% | |
| TTTACCTGCAAAGAACTAGT+TGG | + | tig0033518:33260-33279 | Msa1451630:CDS | 35.0% | |
| TCTCTCAAAACACTCAAGTT+TGG | - | tig0033518:33314-33333 | None:intergenic | 35.0% | |
| AATGAATTCAAACGCAGAAC+TGG | + | tig0033518:33502-33521 | Msa1451630:intron | 35.0% | |
| TGAATGCAGAATTGTTGCAT+AGG | - | tig0033518:33555-33574 | None:intergenic | 35.0% | |
| TCAGCTCATGTTTATGTTTG+TGG | + | tig0033518:33572-33591 | Msa1451630:CDS | 35.0% | |
| !!! | AAGCATCTTTTTCAGCTTTG+GGG | - | tig0033518:33742-33761 | None:intergenic | 35.0% |
| !!! | GTAAGCATCTTTTTCAGCTT+TGG | - | tig0033518:33744-33763 | None:intergenic | 35.0% |
| !! | ATTACAGCAAATTCAGGTTG+TGG | + | tig0033518:33774-33793 | Msa1451630:CDS | 35.0% |
| ATGCAGATTTACTCATACTC+AGG | + | tig0033518:33831-33850 | Msa1451630:CDS | 35.0% | |
| !! | AGATTTTCTATTTGGGATGC+CGG | + | tig0033518:33859-33878 | Msa1451630:CDS | 35.0% |
| !! | TCTTTTTAACTCTGGTGTCA+TGG | + | tig0033518:33910-33929 | Msa1451630:CDS | 35.0% |
| AATGAGATTGAGTCCTACAA+TGG | + | tig0033518:33980-33999 | Msa1451630:CDS | 35.0% | |
| AAATATTTACATGGTGGCAC+AGG | + | tig0033518:34026-34045 | Msa1451630:CDS | 35.0% | |
| !!! | TTCTTGAAGCATTTTTGGGT+TGG | + | tig0033518:34067-34086 | Msa1451630:CDS | 35.0% |
| TAGTGAAGCACATAGAGAAT+TGG | - | tig0033518:34145-34164 | None:intergenic | 35.0% | |
| CTCTATGTGCTTCACTATTT+AGG | + | tig0033518:34148-34167 | Msa1451630:CDS | 35.0% | |
| ! | ACTATTTAGGTTTGAAGCCA+TGG | + | tig0033518:34161-34180 | Msa1451630:CDS | 35.0% |
| GCAAAACTGTTGTAAAAGCT+TGG | - | tig0033518:34290-34309 | None:intergenic | 35.0% | |
| GAAATAGCAAACTACACAGA+TGG | + | tig0033518:34361-34380 | Msa1451630:CDS | 35.0% | |
| TAAAGCAGAAAGAGATGACA+TGG | - | tig0033518:34527-34546 | None:intergenic | 35.0% | |
| ATCGATATTGTATGACTCTC+TGG | + | tig0033518:34757-34776 | Msa1451630:three_prime_UTR | 35.0% | |
| GAATGTGAAGAAGGTGATGT+AGG | - | tig0033518:30608-30627 | None:intergenic | 40.0% | |
| ! | GCAAATTTTGTTGCGCATGT+TGG | + | tig0033518:30649-30668 | Msa1451630:CDS | 40.0% |
| ! | TGCAGAGATTTTGCATTGCA+TGG | + | tig0033518:30877-30896 | Msa1451630:intron | 40.0% |
| GCTGAATATGAGAGGAACAA+TGG | + | tig0033518:30907-30926 | Msa1451630:intron | 40.0% | |
| TAAGGAACTGACATGGATGA+AGG | - | tig0033518:30971-30990 | None:intergenic | 40.0% | |
| AAATGCGAAACTCACACACA+CGG | + | tig0033518:31242-31261 | Msa1451630:intron | 40.0% | |
| AATACACGCATGCACCTAAT+AGG | + | tig0033518:31716-31735 | Msa1451630:intron | 40.0% | |
| ! | GACAGGAAGGGTATATGATA+CGG | - | tig0033518:31822-31841 | None:intergenic | 40.0% |
| AGGAAGCTTAGCAAGATACT+AGG | + | tig0033518:31896-31915 | Msa1451630:intron | 40.0% | |
| CTCATCTACTTGACTAACTG+TGG | - | tig0033518:32021-32040 | None:intergenic | 40.0% | |
| TTTGCATGATGTTGGAGTTC+AGG | + | tig0033518:32170-32189 | Msa1451630:intron | 40.0% | |
| TGGCGGAAATGGTTATCAAT+AGG | - | tig0033518:32489-32508 | None:intergenic | 40.0% | |
| ! | CATTACAAAAGTGGCGGAAA+TGG | - | tig0033518:32500-32519 | None:intergenic | 40.0% |
| GAGGAACATTACAAAAGTGG+CGG | - | tig0033518:32506-32525 | None:intergenic | 40.0% | |
| ! | TGTAAATCTCTGGAGAGTAG+AGG | - | tig0033518:32525-32544 | None:intergenic | 40.0% |
| TGGGTGGTATTGTAAATCTC+TGG | - | tig0033518:32535-32554 | None:intergenic | 40.0% | |
| TGCACTAGAGCCTGTTAAAT+GGG | - | tig0033518:32554-32573 | None:intergenic | 40.0% | |
| TTGCACTAGAGCCTGTTAAA+TGG | - | tig0033518:32555-32574 | None:intergenic | 40.0% | |
| ! | ATTTAACAGGCTCTAGTGCA+AGG | + | tig0033518:32554-32573 | Msa1451630:CDS | 40.0% |
| TCTAGTGCAAGGTATGTTTC+TGG | + | tig0033518:32565-32584 | Msa1451630:intron | 40.0% | |
| ! | TGTGCAATTTTGTGAACAGG+TGG | + | tig0033518:32760-32779 | Msa1451630:intron | 40.0% |
| TTTGTGAACAGGTGGATATG+GGG | + | tig0033518:32768-32787 | Msa1451630:intron | 40.0% | |
| TAGATGTAGAGCAACATGTG+TGG | - | tig0033518:32952-32971 | None:intergenic | 40.0% | |
| TCTTCCTCATCAATCCATTC+TGG | - | tig0033518:33014-33033 | None:intergenic | 40.0% | |
| ! | ATGAGATTGAGTCTTGTACC+AGG | - | tig0033518:33083-33102 | None:intergenic | 40.0% |
| CAGTTAGCTCCATTCTTACA+AGG | - | tig0033518:33119-33138 | None:intergenic | 40.0% | |
| CTTGTAAGAATGGAGCTAAC+TGG | + | tig0033518:33117-33136 | Msa1451630:CDS | 40.0% | |
| TTCCTTTGAATGAGGTAGCA+AGG | - | tig0033518:33187-33206 | None:intergenic | 40.0% | |
| GGGGTAATTTCCTTTGAATG+AGG | - | tig0033518:33195-33214 | None:intergenic | 40.0% | |
| AAAGAACTAGTTGGACGTGA+AGG | + | tig0033518:33269-33288 | Msa1451630:CDS | 40.0% | |
| TTGGACGTGAAGGAAATGTA+TGG | + | tig0033518:33279-33298 | Msa1451630:CDS | 40.0% | |
| GAAAAAGTTCAGCTTCCAGT+TGG | + | tig0033518:33332-33351 | Msa1451630:CDS | 40.0% | |
| AAGTTTGGGAATGTGAGAGA+TGG | - | tig0033518:33411-33430 | None:intergenic | 40.0% | |
| ATGCAAACGAGTGCAAGTTT+GGG | - | tig0033518:33425-33444 | None:intergenic | 40.0% | |
| ! | AACGCAGAACTGGTTTACAA+TGG | + | tig0033518:33512-33531 | Msa1451630:intron | 40.0% |
| ATTGTTGCATAGGCTTCTCT+TGG | - | tig0033518:33545-33564 | None:intergenic | 40.0% | |
| GCACAAAGCATAAGAATGTC+AGG | + | tig0033518:33608-33627 | Msa1451630:CDS | 40.0% | |
| ! | CTTGTTGATGAGACAATCAG+TGG | + | tig0033518:33653-33672 | Msa1451630:CDS | 40.0% |
| ATCAGTGGATATCACAGAAG+CGG | + | tig0033518:33668-33687 | Msa1451630:CDS | 40.0% | |
| AAAAAGAGTGGCATCGTTAC+CGG | - | tig0033518:33897-33916 | None:intergenic | 40.0% | |
| !! | GATGCCACTCTTTTTAACTC+TGG | + | tig0033518:33902-33921 | Msa1451630:CDS | 40.0% |
| GACACCAGAGTTAAAAAGAG+TGG | - | tig0033518:33909-33928 | None:intergenic | 40.0% | |
| !!! | TTTTAACTCTGGTGTCATGG+TGG | + | tig0033518:33913-33932 | Msa1451630:CDS | 40.0% |
| AGCTGAAATGTGCAGTTTGA+TGG | - | tig0033518:33944-33963 | None:intergenic | 40.0% | |
| AGATTGAGTCCTACAATGGA+GGG | + | tig0033518:33984-34003 | Msa1451630:CDS | 40.0% | |
| TGAAGCACATAGAGAATTGG+TGG | - | tig0033518:34142-34161 | None:intergenic | 40.0% | |
| TCAGGGACTATGATTGTAAC+TGG | + | tig0033518:34191-34210 | Msa1451630:CDS | 40.0% | |
| !! | TGTAGTTTGCTATTTCCGCT+TGG | - | tig0033518:34357-34376 | None:intergenic | 40.0% |
| AGAGATGACATGGTAACTGT+GGG | - | tig0033518:34517-34536 | None:intergenic | 40.0% | |
| AAGAGATGACATGGTAACTG+TGG | - | tig0033518:34518-34537 | None:intergenic | 40.0% | |
| TATCCCATTAGAGATGGGAT+CGG | + | tig0033518:34609-34628 | Msa1451630:three_prime_UTR | 40.0% | |
| GGGATCGGCATAAGAAAAAA+TGG | + | tig0033518:34624-34643 | Msa1451630:three_prime_UTR | 40.0% | |
| TTGTATGACTCTCTGGTGTT+TGG | + | tig0033518:34764-34783 | Msa1451630:three_prime_UTR | 40.0% | |
| TGTATGACTCTCTGGTGTTT+GGG | + | tig0033518:34765-34784 | Msa1451630:three_prime_UTR | 40.0% | |
| ! | TATACCGATTGAGGTGTACG+TGG | - | tig0033518:30679-30698 | None:intergenic | 45.0% |
| GCTCTGTAGCTGAATATGAG+AGG | + | tig0033518:30899-30918 | Msa1451630:intron | 45.0% | |
| ! | AGTCTAGCTTCAACAGAACG+AGG | - | tig0033518:30941-30960 | None:intergenic | 45.0% |
| TCACAATTGGGACTGTATGC+AGG | - | tig0033518:31798-31817 | None:intergenic | 45.0% | |
| ACTAGAGCCTGTTAAATGGG+TGG | - | tig0033518:32551-32570 | None:intergenic | 45.0% | |
| GGGACTATCTGTGAGAAAAC+AGG | + | tig0033518:32632-32651 | Msa1451630:intron | 45.0% | |
| ATGCTGCAAACAGTGTGACA+TGG | + | tig0033518:32976-32995 | Msa1451630:intron | 45.0% | |
| TGCTGCAAACAGTGTGACAT+GGG | + | tig0033518:32977-32996 | Msa1451630:intron | 45.0% | |
| GGGAGTCTCTATATCCAGAA+TGG | + | tig0033518:32997-33016 | Msa1451630:CDS | 45.0% | |
| ! | ATCCGAGACTTGGTAGAGAA+GGG | - | tig0033518:33058-33077 | None:intergenic | 45.0% |
| ! | ACGTCCAACTAGTTCTTTGC+AGG | - | tig0033518:33267-33286 | None:intergenic | 45.0% |
| GCAAGTTCACATGATCCAAC+TGG | - | tig0033518:33350-33369 | None:intergenic | 45.0% | |
| GAACTTGCACTTCCTATGAG+AGG | + | tig0033518:33362-33381 | Msa1451630:CDS | 45.0% | |
| AACATACCTCTGCCTCTCAT+AGG | - | tig0033518:33377-33396 | None:intergenic | 45.0% | |
| CATGCAAACGAGTGCAAGTT+TGG | - | tig0033518:33426-33445 | None:intergenic | 45.0% | |
| TATGCTTTGTGCTGCAGCTA+TGG | - | tig0033518:33600-33619 | None:intergenic | 45.0% | |
| TGGATATCACAGAAGCGGTT+TGG | + | tig0033518:33673-33692 | Msa1451630:CDS | 45.0% | |
| TTACCGGTAGCAGTGATTTC+CGG | - | tig0033518:33881-33900 | None:intergenic | 45.0% | |
| GAGATTGAGTCCTACAATGG+AGG | + | tig0033518:33983-34002 | Msa1451630:CDS | 45.0% | |
| GATTGAGTCCTACAATGGAG+GGG | + | tig0033518:33985-34004 | Msa1451630:CDS | 45.0% | |
| !!! | GCATTTTTGGGTTGGTGATG+AGG | + | tig0033518:34075-34094 | Msa1451630:CDS | 45.0% |
| TGAAGCCATGGTTATGCTTC+AGG | + | tig0033518:34173-34192 | Msa1451630:CDS | 45.0% | |
| GAAGCCATGGTTATGCTTCA+GGG | + | tig0033518:34174-34193 | Msa1451630:CDS | 45.0% | |
| TAGTCCCTGAAGCATAACCA+TGG | - | tig0033518:34181-34200 | None:intergenic | 45.0% | |
| GTGATGTAGCACATGCAAAG+TGG | + | tig0033518:34242-34261 | Msa1451630:CDS | 45.0% | |
| ATGTAGCACATGCAAAGTGG+TGG | + | tig0033518:34245-34264 | Msa1451630:CDS | 45.0% | |
| ! | CCTTCTGCTTTGACTTCAAC+AGG | - | tig0033518:34312-34331 | None:intergenic | 45.0% |
| CCTGTTGAAGTCAAAGCAGA+AGG | + | tig0033518:34309-34328 | Msa1451630:CDS | 45.0% | |
| ! | GCACTGGCGAATCAAAGTTA+AGG | + | tig0033518:34384-34403 | Msa1451630:CDS | 45.0% |
| ! | GTGACTGGAAAAGCATGTTG+CGG | + | tig0033518:34440-34459 | Msa1451630:CDS | 45.0% |
| ! | GAAAAGCATGTTGCGGCATT+GGG | + | tig0033518:34447-34466 | Msa1451630:CDS | 45.0% |
| ! | AAAAGCATGTTGCGGCATTG+GGG | + | tig0033518:34448-34467 | Msa1451630:CDS | 45.0% |
| ATGCCGATCCCATCTCTAAT+GGG | - | tig0033518:34615-34634 | None:intergenic | 45.0% | |
| TATGCCGATCCCATCTCTAA+TGG | - | tig0033518:34616-34635 | None:intergenic | 45.0% | |
| !!! | TTTATTTAAGTTTTTATATA+TGG | - | tig0033518:31456-31475 | None:intergenic | 5.0% |
| AGCACCACGTACACCTCAAT+CGG | + | tig0033518:30672-30691 | Msa1451630:CDS | 50.0% | |
| !! | GGATGCAGACTTGATAACGC+TGG | - | tig0033518:32000-32019 | None:intergenic | 50.0% |
| CTTGGTAGAGAAGGGCAAAC+AGG | - | tig0033518:33050-33069 | None:intergenic | 50.0% | |
| TGCCCTTCTCTACCAAGTCT+CGG | + | tig0033518:33053-33072 | Msa1451630:CDS | 50.0% | |
| ! | GATCCGAGACTTGGTAGAGA+AGG | - | tig0033518:33059-33078 | None:intergenic | 50.0% |
| GGCCTTGCTACCTCATTCAA+AGG | + | tig0033518:33182-33201 | Msa1451630:CDS | 50.0% | |
| ATGCCGGAAATCACTGCTAC+CGG | + | tig0033518:33875-33894 | Msa1451630:CDS | 50.0% | |
| CTGCACATTTCAGCTCCTGA+TGG | + | tig0033518:33949-33968 | Msa1451630:CDS | 50.0% | |
| TGGCTCAGCACCAAACAACA+TGG | - | tig0033518:34122-34141 | None:intergenic | 50.0% | |
| ! | AGCACATGCAAAGTGGTGGA+AGG | + | tig0033518:34249-34268 | Msa1451630:CDS | 50.0% |
| ! | GTCAAAGCAGAAGGCACAGT+TGG | + | tig0033518:34318-34337 | Msa1451630:CDS | 50.0% |
| CAAACTACACAGATGGGCAC+TGG | + | tig0033518:34368-34387 | Msa1451630:CDS | 50.0% | |
| ! | GGAAAAGCATGTTGCGGCAT+TGG | + | tig0033518:34446-34465 | Msa1451630:CDS | 50.0% |
| ! | ATGGTAACTGTGGGAGGTGT+TGG | - | tig0033518:34508-34527 | None:intergenic | 50.0% |
| GATGACATGGTAACTGTGGG+AGG | - | tig0033518:34514-34533 | None:intergenic | 50.0% | |
| TGTATGCAGGTCCCCTCATG+TGG | - | tig0033518:31785-31804 | None:intergenic | 55.0% | |
| GTGAACAGGTGGATATGGGG+TGG | + | tig0033518:32771-32790 | Msa1451630:intron | 55.0% | |
| TATGGGGTGGCTCAGATCCT+CGG | + | tig0033518:32784-32803 | Msa1451630:CDS | 55.0% | |
| CTACCAAGTCTCGGATCTCC+TGG | + | tig0033518:33062-33081 | Msa1451630:CDS | 55.0% | |
| GTACCAGGAGATCCGAGACT+TGG | - | tig0033518:33068-33087 | None:intergenic | 55.0% | |
| GCACTTCCTATGAGAGGCAG+AGG | + | tig0033518:33368-33387 | Msa1451630:CDS | 55.0% | |
| ! | AGAAGCGGTTTGGAAGCAGC+AGG | + | tig0033518:33683-33702 | Msa1451630:CDS | 55.0% |
| ! | GAAGCGGTTTGGAAGCAGCA+GGG | + | tig0033518:33684-33703 | Msa1451630:CDS | 55.0% |
| TTTGGAAGCAGCAGGGTGGA+AGG | + | tig0033518:33691-33710 | Msa1451630:CDS | 55.0% | |
| TCCTACAATGGAGGGGACCA+AGG | + | tig0033518:33992-34011 | Msa1451630:CDS | 55.0% | |
| CCTACAATGGAGGGGACCAA+GGG | + | tig0033518:33993-34012 | Msa1451630:CDS | 55.0% | |
| ! | AGCAGAAGGCACAGTTGGAG+TGG | + | tig0033518:34323-34342 | Msa1451630:CDS | 55.0% |
| ! | GCAGAAGGCACAGTTGGAGT+GGG | + | tig0033518:34324-34343 | Msa1451630:CDS | 55.0% |
| ! | GGCATTGGGGAGAGAGTAAC+TGG | + | tig0033518:34461-34480 | Msa1451630:CDS | 55.0% |
| CCCTTGGTCCCCTCCATTGT+AGG | - | tig0033518:33996-34015 | None:intergenic | 60.0% | |
| GGAGTGGGATCGAAGCCAAG+CGG | + | tig0033518:34339-34358 | Msa1451630:CDS | 60.0% | |
| CACCTGCAGCTTGCAGCTGC+TGG | + | tig0033518:33161-33180 | Msa1451630:intron | 65.0% | |
| ! | GCGGTTTGGAAGCAGCAGGG+TGG | + | tig0033518:33687-33706 | Msa1451630:CDS | 65.0% |
| GGCCAGCAGCTGCAAGCTGC+AGG | - | tig0033518:33166-33185 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033518 | gene | 30523 | 34854 | 30523 | ID=Msa1451630;Name=Msa1451630 |
| tig0033518 | mRNA | 30523 | 34854 | 30523 | ID=Msa1451630-mRNA-1;Parent=Msa1451630;Name=Msa1451630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.28|1|0.16|0.14|7|305|684 |
| tig0033518 | exon | 30523 | 30693 | 30523 | ID=Msa1451630-mRNA-1:exon:18138;Parent=Msa1451630-mRNA-1 |
| tig0033518 | exon | 30908 | 30978 | 30908 | ID=Msa1451630-mRNA-1:exon:18139;Parent=Msa1451630-mRNA-1 |
| tig0033518 | exon | 32369 | 32575 | 32369 | ID=Msa1451630-mRNA-1:exon:18140;Parent=Msa1451630-mRNA-1 |
| tig0033518 | exon | 32779 | 32973 | 32779 | ID=Msa1451630-mRNA-1:exon:18141;Parent=Msa1451630-mRNA-1 |
| tig0033518 | exon | 32989 | 33155 | 32989 | ID=Msa1451630-mRNA-1:exon:18142;Parent=Msa1451630-mRNA-1 |
| tig0033518 | exon | 33177 | 33389 | 33177 | ID=Msa1451630-mRNA-1:exon:18143;Parent=Msa1451630-mRNA-1 |
| tig0033518 | exon | 33519 | 34854 | 33519 | ID=Msa1451630-mRNA-1:exon:18144;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 30523 | 30693 | 30523 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 30908 | 30978 | 30908 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 32369 | 32575 | 32369 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 32779 | 32973 | 32779 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 32989 | 33155 | 32989 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 33177 | 33389 | 33177 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | CDS | 33519 | 34549 | 33519 | ID=Msa1451630-mRNA-1:cds;Parent=Msa1451630-mRNA-1 |
| tig0033518 | three_prime_UTR | 34550 | 34854 | 34550 | ID=Msa1451630-mRNA-1:three_prime_utr;Parent=Msa1451630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
