Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470220 | XP_003602583.1 | 93.093 | 637 | 13 | 3 | 1 | 606 | 1 | 637 | 0.0 | 1217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470220 | sp|Q9LSB1|GUX1_ARATH | 64.587 | 641 | 177 | 8 | 13 | 606 | 17 | 654 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470220 | G7JBH4 | 93.093 | 637 | 13 | 3 | 1 | 606 | 1 | 637 | 0.0 | 1217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081250 | Msa0470220 | 0.800982 | 1.116315e-48 | -8.615850e-47 |
| Msa0193850 | Msa0470220 | 0.846193 | 2.533134e-59 | -8.615850e-47 |
| Msa0235710 | Msa0470220 | 0.824144 | 9.462795e-54 | -8.615850e-47 |
| Msa0470220 | Msa0621160 | 0.987489 | 1.927658e-170 | -8.615850e-47 |
| Msa0470220 | Msa1412710 | 0.800764 | 1.236753e-48 | -8.615850e-47 |
| Msa0470220 | Msa1451630 | 0.951678 | 1.228367e-109 | -8.615850e-47 |
| Msa0314170 | Msa0470220 | 0.827194 | 1.789957e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470220 | MtrunA17_Chr3g0129911 | 93.093 | 637 | 13 | 3 | 1 | 606 | 1 | 637 | 0.0 | 1217 |
| Msa0470220 | MtrunA17_Chr1g0159301 | 63.721 | 645 | 189 | 8 | 6 | 606 | 3 | 646 | 0.0 | 828 |
| Msa0470220 | MtrunA17_Chr1g0153481 | 47.835 | 485 | 218 | 10 | 109 | 562 | 108 | 588 | 6.29e-157 | 463 |
| Msa0470220 | MtrunA17_Chr1g0153471 | 45.181 | 498 | 243 | 11 | 91 | 562 | 91 | 584 | 7.53e-143 | 427 |
| Msa0470220 | MtrunA17_Chr1g0191821 | 44.708 | 463 | 208 | 8 | 138 | 565 | 102 | 551 | 5.30e-135 | 405 |
| Msa0470220 | MtrunA17_Chr7g0272921 | 37.699 | 565 | 283 | 13 | 52 | 568 | 18 | 561 | 2.09e-133 | 401 |
| Msa0470220 | MtrunA17_Chr1g0190421 | 35.802 | 162 | 103 | 1 | 275 | 436 | 27 | 187 | 8.53e-28 | 117 |
| Msa0470220 | MtrunA17_Chr7g0274421 | 35.119 | 168 | 108 | 1 | 269 | 436 | 30 | 196 | 1.53e-27 | 117 |
| Msa0470220 | MtrunA17_Chr7g0270281 | 28.079 | 203 | 107 | 3 | 272 | 435 | 23 | 225 | 4.09e-17 | 83.2 |
| Msa0470220 | MtrunA17_Chr1g0193011 | 27.481 | 262 | 134 | 9 | 268 | 485 | 16 | 265 | 4.87e-16 | 79.7 |
| Msa0470220 | MtrunA17_Chr4g0074911 | 35.043 | 117 | 73 | 1 | 271 | 384 | 20 | 136 | 1.97e-15 | 75.9 |
| Msa0470220 | MtrunA17_Chr5g0399211 | 28.000 | 175 | 111 | 5 | 273 | 435 | 50 | 221 | 2.53e-14 | 75.9 |
| Msa0470220 | MtrunA17_Chr7g0271581 | 24.514 | 257 | 134 | 8 | 275 | 485 | 43 | 285 | 9.19e-13 | 70.1 |
| Msa0470220 | MtrunA17_Chr4g0056181 | 26.163 | 172 | 118 | 4 | 273 | 435 | 37 | 208 | 1.20e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470220 | AT3G18660.2 | 64.587 | 641 | 177 | 8 | 13 | 606 | 17 | 654 | 0.0 | 840 |
| Msa0470220 | AT3G18660.3 | 64.780 | 636 | 179 | 8 | 13 | 606 | 17 | 649 | 0.0 | 836 |
| Msa0470220 | AT3G18660.1 | 64.678 | 637 | 179 | 8 | 13 | 606 | 17 | 650 | 0.0 | 836 |
| Msa0470220 | AT1G77130.1 | 61.475 | 610 | 187 | 10 | 5 | 582 | 1 | 594 | 0.0 | 748 |
| Msa0470220 | AT4G33330.5 | 49.794 | 486 | 210 | 11 | 109 | 565 | 43 | 523 | 1.30e-162 | 475 |
| Msa0470220 | AT4G33330.4 | 49.794 | 486 | 210 | 11 | 109 | 565 | 122 | 602 | 1.75e-161 | 475 |
| Msa0470220 | AT4G33330.1 | 49.794 | 486 | 210 | 11 | 109 | 565 | 111 | 591 | 2.02e-161 | 475 |
| Msa0470220 | AT4G33330.2 | 49.693 | 489 | 212 | 11 | 109 | 568 | 111 | 594 | 3.89e-161 | 475 |
| Msa0470220 | AT1G08990.1 | 43.673 | 490 | 235 | 10 | 109 | 564 | 79 | 561 | 3.06e-135 | 407 |
| Msa0470220 | AT1G54940.1 | 44.219 | 493 | 220 | 13 | 109 | 562 | 74 | 550 | 1.34e-130 | 394 |
| Msa0470220 | AT4G33330.3 | 48.571 | 350 | 147 | 10 | 109 | 429 | 122 | 467 | 1.85e-99 | 311 |
| Msa0470220 | AT5G18480.1 | 36.095 | 169 | 107 | 1 | 267 | 435 | 24 | 191 | 1.39e-29 | 123 |
| Msa0470220 | AT1G60470.1 | 27.206 | 272 | 140 | 8 | 259 | 485 | 9 | 267 | 8.91e-18 | 85.5 |
| Msa0470220 | AT1G60450.1 | 27.184 | 206 | 109 | 3 | 271 | 435 | 16 | 221 | 1.93e-16 | 81.3 |
| Msa0470220 | AT1G56600.1 | 26.357 | 258 | 133 | 7 | 273 | 485 | 21 | 266 | 5.34e-16 | 80.1 |
| Msa0470220 | AT1G09350.1 | 25.616 | 203 | 111 | 2 | 273 | 435 | 15 | 217 | 1.34e-15 | 79.0 |
| Msa0470220 | AT4G26250.1 | 25.806 | 217 | 120 | 4 | 273 | 448 | 24 | 240 | 1.48e-15 | 79.0 |
| Msa0470220 | AT5G30500.2 | 25.123 | 203 | 112 | 3 | 270 | 432 | 21 | 223 | 2.09e-14 | 73.9 |
| Msa0470220 | AT5G30500.1 | 32.203 | 118 | 77 | 1 | 270 | 384 | 21 | 138 | 1.88e-13 | 72.4 |
| Msa0470220 | AT2G47180.1 | 34.211 | 114 | 72 | 1 | 275 | 385 | 31 | 144 | 2.67e-13 | 72.0 |
| Msa0470220 | AT2G35710.4 | 23.810 | 210 | 145 | 5 | 239 | 436 | 28 | 234 | 2.02e-11 | 65.9 |
| Msa0470220 | AT4G16600.1 | 25.989 | 177 | 114 | 6 | 273 | 436 | 58 | 230 | 2.16e-11 | 67.0 |
| Msa0470220 | AT5G23790.1 | 31.858 | 113 | 74 | 1 | 275 | 384 | 23 | 135 | 7.70e-11 | 64.3 |
| Msa0470220 | AT2G35710.1 | 26.136 | 176 | 115 | 5 | 273 | 436 | 62 | 234 | 8.65e-11 | 65.1 |
Find 145 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACAATATCGATTCATTT+AGG | 0.151662 | 3_3:+72296702 | None:intergenic |
| CTCTATGTGCTTCACTATTT+AGG | 0.175807 | 3_3:-72297302 | Msa0470220:CDS |
| GGTAATGAAGAGCACATAAA+TGG | 0.238422 | 3_3:+72298237 | None:intergenic |
| TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | 3_3:-72297277 | Msa0470220:CDS |
| TCTTCCTCATCAATCCATTC+TGG | 0.258883 | 3_3:+72298439 | None:intergenic |
| TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | 3_3:-72297878 | Msa0470220:CDS |
| TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | 3_3:+72297572 | None:intergenic |
| TGCATCTTAAGTTTCTATCT+TGG | 0.305792 | 3_3:+72299156 | None:intergenic |
| CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | 3_3:+72297141 | None:intergenic |
| AATGGAATTACAGCAAATTC+AGG | 0.311462 | 3_3:-72297682 | Msa0470220:CDS |
| TTGTATGACTCTCTGGTGTT+TGG | 0.314890 | 3_3:-72296686 | Msa0470220:three_prime_UTR |
| TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | 3_3:+72298139 | None:intergenic |
| ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | 3_3:+72298186 | None:intergenic |
| TTTGTTGTGAAACTTATAAT+AGG | 0.339384 | 3_3:+72296871 | None:intergenic |
| ATACAATATCGATTCATTTA+GGG | 0.346571 | 3_3:+72296703 | None:intergenic |
| TATGCCGATCCCATCTCTAA+TGG | 0.351875 | 3_3:+72296837 | None:intergenic |
| GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | 3_3:-72297003 | Msa0470220:CDS |
| TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | 3_3:+72298199 | None:intergenic |
| CATTACAAAAGTGGCGGAAA+TGG | 0.368832 | 3_3:+72299100 | None:intergenic |
| CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | 3_3:+72298205 | None:intergenic |
| TGTATGACTCTCTGGTGTTT+GGG | 0.383721 | 3_3:-72296685 | Msa0470220:three_prime_UTR |
| GAATTAATTGATAGCATTGT+TGG | 0.389069 | 3_3:+72301011 | None:intergenic |
| ATCAAATGTAGATACTGATT+GGG | 0.390328 | 3_3:-72298638 | Msa0470220:CDS |
| AATTAATTGATAGCATTGTT+GGG | 0.402805 | 3_3:+72301012 | None:intergenic |
| TATCAAATGTAGATACTGAT+TGG | 0.406559 | 3_3:-72298639 | Msa0470220:CDS |
| TCAGGGACTATGATTGTAAC+TGG | 0.408838 | 3_3:-72297259 | Msa0470220:CDS |
| AATGTGCAACAATCATAAAC+TGG | 0.410467 | 3_3:-72296633 | Msa0470220:three_prime_UTR |
| GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | 3_3:-72297004 | Msa0470220:CDS |
| TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | 3_3:+72297853 | None:intergenic |
| CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | 3_3:-72298333 | Msa0470220:CDS |
| GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | 3_3:-72296989 | Msa0470220:CDS |
| ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | 3_3:+72297908 | None:intergenic |
| GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | 3_3:+72297163 | None:intergenic |
| CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | 3_3:+72297457 | None:intergenic |
| TGGCGGAAATGGTTATCAAT+AGG | 0.431528 | 3_3:+72299111 | None:intergenic |
| TGGATATCACAGAAGCGGTT+TGG | 0.440256 | 3_3:-72297777 | Msa0470220:CDS |
| ATGCCGATCCCATCTCTAAT+GGG | 0.445955 | 3_3:+72296838 | None:intergenic |
| CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | 3_3:+72298403 | None:intergenic |
| ATCGATATTGTATGACTCTC+TGG | 0.458383 | 3_3:-72296693 | Msa0470220:three_prime_UTR |
| ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | 3_3:-72297289 | Msa0470220:CDS |
| GAATGTGAAGAAGGTGATGT+AGG | 0.462933 | 3_3:+72300989 | None:intergenic |
| GTAATGAAGAGCACATAAAT+GGG | 0.464788 | 3_3:+72298238 | None:intergenic |
| ACAACACTGAGATATCTAAC+TGG | 0.465253 | 3_3:-72298543 | Msa0470220:CDS |
| TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | 3_3:+72297398 | None:intergenic |
| CAAATGAAAACCATGTTGTT+TGG | 0.468309 | 3_3:-72297341 | Msa0470220:CDS |
| GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | 3_3:-72297132 | Msa0470220:CDS |
| CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | 3_3:-72298388 | Msa0470220:CDS |
| AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | 3_3:+72297509 | None:intergenic |
| CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | 3_3:+72297164 | None:intergenic |
| TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | 3_3:+72297308 | None:intergenic |
| CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | 3_3:+72298334 | None:intergenic |
| TGCAAATTTGTTGCGCATGT+TGG | 0.474542 | 3_3:-72300946 | Msa0470220:five_prime_UTR |
| AAGAAAGAGGAATGTGAAGA+AGG | 0.480068 | 3_3:+72300980 | None:intergenic |
| GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | 3_3:-72298343 | Msa0470220:CDS |
| TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | 3_3:-72298397 | Msa0470220:CDS |
| CTGAATATGAGAGGAACAAT+GGG | 0.489156 | 3_3:-72300687 | Msa0470220:exon |
| GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | 3_3:-72297276 | Msa0470220:CDS |
| GCACAAAGCATAAGAATGTC+AGG | 0.490485 | 3_3:-72297842 | Msa0470220:CDS |
| GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | 3_3:+72298394 | None:intergenic |
| TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | 3_3:-72298190 | Msa0470220:CDS |
| GCAAGTTCACATGATCCAAC+TGG | 0.492733 | 3_3:+72298103 | None:intergenic |
| GGAAAACAATATACCGATTG+AGG | 0.497061 | 3_3:+72300910 | None:intergenic |
| TCTCATTTATATGATCCATC+AGG | 0.500815 | 3_3:+72297486 | None:intergenic |
| ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | 3_3:+72296945 | None:intergenic |
| ATATTTCATTCAAATACCCT+TGG | 0.517914 | 3_3:+72297441 | None:intergenic |
| TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | 3_3:+72298266 | None:intergenic |
| AGCACCACGTACACCTCAAT+CGG | 0.523813 | 3_3:-72300923 | Msa0470220:intron |
| TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | 3_3:+72297096 | None:intergenic |
| AAATATTTACATGGTGGCAC+AGG | 0.525162 | 3_3:-72297424 | Msa0470220:CDS |
| TAAGGAACTGACATGGATGA+AGG | 0.528957 | 3_3:+72300627 | None:intergenic |
| CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | 3_3:-72297501 | Msa0470220:CDS |
| CACAGATAGAAACAAGAAAG+AGG | 0.530154 | 3_3:+72300967 | None:intergenic |
| ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | 3_3:-72297676 | Msa0470220:CDS |
| AACATACCTCTGCCTCTCAT+AGG | 0.531287 | 3_3:+72298076 | None:intergenic |
| GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | 3_3:-72298453 | Msa0470220:CDS |
| GTATAGATAATCTTTGTGAC+TGG | 0.535311 | 3_3:-72297025 | Msa0470220:CDS |
| GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | 3_3:-72297066 | Msa0470220:CDS |
| GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | 3_3:+72298258 | None:intergenic |
| TCCTACAATGGAGGGGACCA+AGG | 0.538011 | 3_3:-72297458 | Msa0470220:CDS |
| ATGCAGATTTACTCATACTC+AGG | 0.538087 | 3_3:-72297619 | Msa0470220:CDS |
| ATTTGAATGAAATATTTACA+TGG | 0.539540 | 3_3:-72297433 | Msa0470220:CDS |
| GAAATAGCAAACTACACAGA+TGG | 0.541544 | 3_3:-72297089 | Msa0470220:CDS |
| ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | 3_3:+72298216 | None:intergenic |
| ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | 3_3:-72297575 | Msa0470220:CDS |
| TGAAGCACATAGAGAATTGG+TGG | 0.546520 | 3_3:+72297311 | None:intergenic |
| TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | 3_3:-72298171 | Msa0470220:CDS |
| AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | 3_3:-72297767 | Msa0470220:CDS |
| AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | 3_3:-72297127 | Msa0470220:CDS |
| TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | 3_3:-72297759 | Msa0470220:CDS |
| TGAAGATTTATACAAGAGAA+AGG | 0.550106 | 3_3:-72299228 | Msa0470220:CDS |
| TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | 3_3:-72298666 | Msa0470220:CDS |
| TCTCATCAACAAGTATTACT+AGG | 0.558372 | 3_3:+72297807 | None:intergenic |
| GTACCAGGAGATCCGAGACT+TGG | 0.558725 | 3_3:+72298385 | None:intergenic |
| ATTAATTGATAGCATTGTTG+GGG | 0.561261 | 3_3:+72301013 | None:intergenic |
| AGATTGAGTCCTACAATGGA+GGG | 0.566288 | 3_3:-72297466 | Msa0470220:CDS |
| CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | 3_3:-72297141 | Msa0470220:CDS |
| GCTGAATATGAGAGGAACAA+TGG | 0.571145 | 3_3:-72300688 | Msa0470220:exon |
| GTAGAGGAACATTACAAAAG+TGG | 0.573234 | 3_3:+72299091 | None:intergenic |
| TATCCCATTAGAGATGGGAT+CGG | 0.576473 | 3_3:-72296841 | Msa0470220:three_prime_UTR |
| GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | 3_3:-72298268 | Msa0470220:CDS |
| ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | 3_3:+72298395 | None:intergenic |
| TCTTGGATAGATAAGTTGAA+AGG | 0.588178 | 3_3:+72299173 | None:intergenic |
| GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | 3_3:-72297126 | Msa0470220:CDS |
| AACGCAGAACTGGTTTACAA+TGG | 0.591344 | 3_3:-72297938 | Msa0470220:intron |
| GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | 3_3:-72298082 | Msa0470220:intron |
| CAAACTACACAGATGGGCAC+TGG | 0.597035 | 3_3:-72297082 | Msa0470220:CDS |
| AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | 3_3:-72298181 | Msa0470220:CDS |
| GAGATTGAGTCCTACAATGG+AGG | 0.602635 | 3_3:-72297467 | Msa0470220:CDS |
| AAATAGCAAACTACACAGAT+GGG | 0.605901 | 3_3:-72297088 | Msa0470220:CDS |
| TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | 3_3:+72297898 | None:intergenic |
| AATGAGATTGAGTCCTACAA+TGG | 0.611979 | 3_3:-72297470 | Msa0470220:CDS |
| GTGAACAGGTGGATATGGGG+TGG | 0.612033 | 3_3:-72298679 | Msa0470220:intron |
| AAGAGATGACATGGTAACTG+TGG | 0.612180 | 3_3:+72296935 | None:intergenic |
| TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | 3_3:-72298473 | Msa0470220:intron |
| TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | 3_3:+72296926 | None:intergenic |
| ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | 3_3:+72298370 | None:intergenic |
| AGAGATGACATGGTAACTGT+GGG | 0.623896 | 3_3:+72296936 | None:intergenic |
| TGGCTCAGCACCAAACAACA+TGG | 0.624342 | 3_3:+72297331 | None:intergenic |
| ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | 3_3:-72298474 | Msa0470220:intron |
| ATATCCAGAATGGATTGATG+AGG | 0.627762 | 3_3:-72298443 | Msa0470220:CDS |
| AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | 3_3:-72297002 | Msa0470220:CDS |
| ATCAGTGGATATCACAGAAG+CGG | 0.632224 | 3_3:-72297782 | Msa0470220:CDS |
| CTTGTTGATGAGACAATCAG+TGG | 0.634716 | 3_3:-72297797 | Msa0470220:CDS |
| TTTGTGAACAGGTGGATATG+GGG | 0.635856 | 3_3:-72298682 | Msa0470220:intron |
| TGAATGAAATATTTACATGG+TGG | 0.649910 | 3_3:-72297430 | Msa0470220:CDS |
| CCTACAATGGAGGGGACCAA+GGG | 0.651743 | 3_3:-72297457 | Msa0470220:CDS |
| GCTCTGTAGCTGAATATGAG+AGG | 0.662782 | 3_3:-72300696 | Msa0470220:exon |
| GAGGAACATTACAAAAGTGG+CGG | 0.663674 | 3_3:+72299094 | None:intergenic |
| TCAAATGTAGATACTGATTG+GGG | 0.666900 | 3_3:-72298637 | Msa0470220:CDS |
| ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | 3_3:-72297205 | Msa0470220:CDS |
| AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | 3_3:-72297201 | Msa0470220:CDS |
| GATTGAGTCCTACAATGGAG+GGG | 0.670790 | 3_3:-72297465 | Msa0470220:CDS |
| GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | 3_3:-72297766 | Msa0470220:CDS |
| GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | 3_3:-72297763 | Msa0470220:CDS |
| GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | 3_3:-72297010 | Msa0470220:CDS |
| TATACCGATTGAGGTGTACG+TGG | 0.689087 | 3_3:+72300919 | None:intergenic |
| TAATGAAGAGCACATAAATG+GGG | 0.692136 | 3_3:+72298239 | None:intergenic |
| GAACTTGCACTTCCTATGAG+AGG | 0.692338 | 3_3:-72298088 | Msa0470220:CDS |
| TAGATGTAGAGCAACATGTG+TGG | 0.702518 | 3_3:+72298501 | None:intergenic |
| TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | 3_3:+72297272 | None:intergenic |
| TCTACATTTGATATGTACCG+AGG | 0.712296 | 3_3:+72298649 | None:intergenic |
| AGTCTAGCTTCAACAGAACG+AGG | 0.720197 | 3_3:+72300657 | None:intergenic |
| GATGACATGGTAACTGTGGG+AGG | 0.721623 | 3_3:+72296939 | None:intergenic |
| GTGATGTAGCACATGCAAAG+TGG | 0.727257 | 3_3:-72297208 | Msa0470220:CDS |
| GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | 3_3:-72297111 | Msa0470220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTTCATATATAAC+GGG | - | chr3_3:72298836-72298855 | Msa0470220:intron | 10.0% |
| !!! | ACATTTTTTATTCTTAAAAA+TGG | - | chr3_3:72300880-72300899 | Msa0470220:intron | 10.0% |
| !! | TATTGAAAACTAAATTAAAC+TGG | + | chr3_3:72296846-72296865 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGAAAGAAA+AGG | + | chr3_3:72297079-72297098 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTATATATGGA+TGG | + | chr3_3:72297511-72297530 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAACTCATTAT+TGG | + | chr3_3:72297564-72297583 | None:intergenic | 15.0% |
| !! | ATCAGTATTCAATATTAAAA+AGG | - | chr3_3:72297613-72297632 | Msa0470220:CDS | 15.0% |
| !!! | TAAATTATTTGTTATGAACA+AGG | + | chr3_3:72297681-72297700 | None:intergenic | 15.0% |
| !!! | GTTTTGTAAATTAATATAGT+TGG | + | chr3_3:72298117-72298136 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCATGAAACTT+GGG | - | chr3_3:72298704-72298723 | Msa0470220:intron | 15.0% |
| !! | AAAGAAAAAAATGAATTTCA+AGG | - | chr3_3:72299068-72299087 | Msa0470220:intron | 15.0% |
| !! | ATTTGAATGAAATATTTACA+TGG | - | chr3_3:72300221-72300240 | Msa0470220:intron | 15.0% |
| !!! | AATTAATTGATAGCATTGTT+GGG | + | chr3_3:72296645-72296664 | None:intergenic | 20.0% |
| !! | AACTATGAAGAAGAAAATTA+AGG | + | chr3_3:72297048-72297067 | None:intergenic | 20.0% |
| !! | ATGATAATCATCATAAAATC+AGG | - | chr3_3:72297095-72297114 | Msa0470220:CDS | 20.0% |
| !!! | TCCAATAGTCATTTATTTTT+AGG | - | chr3_3:72297165-72297184 | Msa0470220:CDS | 20.0% |
| !! | TCCTAAAAATAAATGACTAT+TGG | + | chr3_3:72297169-72297188 | None:intergenic | 20.0% |
| !! | TACAATTACAATGTAATTAC+TGG | - | chr3_3:72297373-72297392 | Msa0470220:CDS | 20.0% |
| !!! | AGTTTTGTAAAAAATGTATC+TGG | - | chr3_3:72297570-72297589 | Msa0470220:CDS | 20.0% |
| !! | TAAAAAATGTATCTGGTAAA+AGG | - | chr3_3:72297577-72297596 | Msa0470220:CDS | 20.0% |
| !! | AAATAAACACATATAATCAG+TGG | - | chr3_3:72298020-72298039 | Msa0470220:intron | 20.0% |
| !! | AAAAAAATTCACCAAACAAT+TGG | + | chr3_3:72298356-72298375 | None:intergenic | 20.0% |
| !! | GAAAAAAAAATCATGAAACT+TGG | - | chr3_3:72298703-72298722 | Msa0470220:intron | 20.0% |
| !! | TAATCTCGATATTAATTCAT+AGG | + | chr3_3:72298819-72298838 | None:intergenic | 20.0% |
| !! | ATTTAATGAGAAAAACATGA+TGG | + | chr3_3:72299663-72299682 | None:intergenic | 20.0% |
| !!! | TTTGTTGTGAAACTTATAAT+AGG | + | chr3_3:72300786-72300805 | None:intergenic | 20.0% |
| !! | CATAAGAAAAAATGGATAAA+GGG | - | chr3_3:72300836-72300855 | Msa0470220:intron | 20.0% |
| !! | AAGAATAAAAAATGTGTACA+CGG | + | chr3_3:72300875-72300894 | None:intergenic | 20.0% |
| !!! | TCTGATAATTCAATTTTTGA+GGG | - | chr3_3:72300924-72300943 | Msa0470220:five_prime_UTR | 20.0% |
| !!! | ATACAATATCGATTCATTTA+GGG | + | chr3_3:72300954-72300973 | None:intergenic | 20.0% |
| !! | ATTAATTGATAGCATTGTTG+GGG | + | chr3_3:72296644-72296663 | None:intergenic | 25.0% |
| !! | GAATTAATTGATAGCATTGT+TGG | + | chr3_3:72296646-72296665 | None:intergenic | 25.0% |
| ! | ACACAACACAATATGTATAA+TGG | + | chr3_3:72296768-72296787 | None:intergenic | 25.0% |
| !! | ATACTTGAAGATGATTTTCT+AGG | - | chr3_3:72296816-72296835 | Msa0470220:three_prime_UTR | 25.0% |
| !! | TACTTGAAGATGATTTTCTA+GGG | - | chr3_3:72296817-72296836 | Msa0470220:three_prime_UTR | 25.0% |
| ! | AGGAAAGAAACAAAATGAAA+TGG | + | chr3_3:72296879-72296898 | None:intergenic | 25.0% |
| !! | AGTTTAATAAATGCATCGAT+AGG | + | chr3_3:72296899-72296918 | None:intergenic | 25.0% |
| ! | ATCGATGCATTTATTAAACT+TGG | - | chr3_3:72296899-72296918 | Msa0470220:three_prime_UTR | 25.0% |
| ! | TTAGGACTAAAATTATCACA+AGG | - | chr3_3:72297183-72297202 | Msa0470220:CDS | 25.0% |
| ! | AAGTCAAGTTTCATAAATGA+TGG | - | chr3_3:72297229-72297248 | Msa0470220:CDS | 25.0% |
| ! | TGTATACTTCAAATCCTATT+AGG | + | chr3_3:72297791-72297810 | None:intergenic | 25.0% |
| !! | TATTTCTTGTTTACATTCGA+AGG | - | chr3_3:72297934-72297953 | Msa0470220:CDS | 25.0% |
| ! | TTATGTCCTTACATAAATGT+TGG | + | chr3_3:72298273-72298292 | None:intergenic | 25.0% |
| ! | AATGTGTTTCATTAATAACG+AGG | - | chr3_3:72298398-72298417 | Msa0470220:CDS | 25.0% |
| ! | TGAAGATTTATACAAGAGAA+AGG | - | chr3_3:72298426-72298445 | Msa0470220:CDS | 25.0% |
| ! | ATCATGAAACTTATGAAACT+GGG | - | chr3_3:72298667-72298686 | Msa0470220:CDS | 25.0% |
| !!! | TTTTTTCGATTTCTAAATCC+AGG | + | chr3_3:72298748-72298767 | None:intergenic | 25.0% |
| ! | AATCCTGATTCAATTCAAAT+AGG | - | chr3_3:72298772-72298791 | Msa0470220:intron | 25.0% |
| ! | ATCCTGATTCAATTCAAATA+GGG | - | chr3_3:72298773-72298792 | Msa0470220:intron | 25.0% |
| ! | TATCAAATGTAGATACTGAT+TGG | - | chr3_3:72299015-72299034 | Msa0470220:intron | 25.0% |
| !! | ATCAAATGTAGATACTGATT+GGG | - | chr3_3:72299016-72299035 | Msa0470220:intron | 25.0% |
| ! | AAAAATGAATTTCAAGGCAT+TGG | - | chr3_3:72299074-72299093 | Msa0470220:intron | 25.0% |
| ! | AAAAAGATGCTTACAATGAA+TGG | - | chr3_3:72299954-72299973 | Msa0470220:intron | 25.0% |
| !! | AGGAACATAGATTTTCTATT+TGG | - | chr3_3:72300055-72300074 | Msa0470220:intron | 25.0% |
| !! | GGAACATAGATTTTCTATTT+GGG | - | chr3_3:72300056-72300075 | Msa0470220:intron | 25.0% |
| ! | ATATTTCATTCAAATACCCT+TGG | + | chr3_3:72300216-72300235 | None:intergenic | 25.0% |
| ! | TGAATGAAATATTTACATGG+TGG | - | chr3_3:72300224-72300243 | Msa0470220:intron | 25.0% |
| !! | AAATTTTATCCCATTAGAGA+TGG | - | chr3_3:72300807-72300826 | Msa0470220:intron | 25.0% |
| !! | AATTTTATCCCATTAGAGAT+GGG | - | chr3_3:72300808-72300827 | Msa0470220:intron | 25.0% |
| ! | GCATAAGAAAAAATGGATAA+AGG | - | chr3_3:72300835-72300854 | Msa0470220:intron | 25.0% |
| !! | CTCTGATAATTCAATTTTTG+AGG | - | chr3_3:72300923-72300942 | Msa0470220:intron | 25.0% |
| !!! | CATACAATATCGATTCATTT+AGG | + | chr3_3:72300955-72300974 | None:intergenic | 25.0% |
| ! | ACTTGAAGATGATTTTCTAG+GGG | - | chr3_3:72296818-72296837 | Msa0470220:three_prime_UTR | 30.0% |
| AGAAAATTAAGGAACTGACA+TGG | + | chr3_3:72297037-72297056 | None:intergenic | 30.0% | |
| ! | GCATTTAGACTCTTTAGAAA+AGG | + | chr3_3:72297287-72297306 | None:intergenic | 30.0% |
| TAAGAACGTTTAATACGTTG+AGG | + | chr3_3:72297355-72297374 | None:intergenic | 30.0% | |
| GTATGTGTTAGATAGCTATA+AGG | + | chr3_3:72297711-72297730 | None:intergenic | 30.0% | |
| ! | AATCATTTTCAAACCACATG+AGG | - | chr3_3:72297827-72297846 | Msa0470220:CDS | 30.0% |
| ! | ATCATTTTCAAACCACATGA+GGG | - | chr3_3:72297828-72297847 | Msa0470220:CDS | 30.0% |
| ATATGATACGGATCACAATT+GGG | + | chr3_3:72297868-72297887 | None:intergenic | 30.0% | |
| TATATGATACGGATCACAAT+TGG | + | chr3_3:72297869-72297888 | None:intergenic | 30.0% | |
| TCATTTAGAAAAGACAGGAA+GGG | + | chr3_3:72297892-72297911 | None:intergenic | 30.0% | |
| ! | ACGTATATTTTGCATGATGT+TGG | - | chr3_3:72298220-72298239 | Msa0470220:CDS | 30.0% |
| CAAACTCCAACATTTATGTA+AGG | - | chr3_3:72298264-72298283 | Msa0470220:CDS | 30.0% | |
| TATCTGCAAATCCAATTGTT+TGG | - | chr3_3:72298342-72298361 | Msa0470220:CDS | 30.0% | |
| ! | TCTTGGATAGATAAGTTGAA+AGG | + | chr3_3:72298484-72298503 | None:intergenic | 30.0% |
| TGCATCTTAAGTTTCTATCT+TGG | + | chr3_3:72298501-72298520 | None:intergenic | 30.0% | |
| CATCATGAAACTTATGAAAC+TGG | - | chr3_3:72298666-72298685 | Msa0470220:CDS | 30.0% | |
| TCATGAAACTTATGAAACTG+GGG | - | chr3_3:72298668-72298687 | Msa0470220:CDS | 30.0% | |
| TCCTGATTCAATTCAAATAG+GGG | - | chr3_3:72298774-72298793 | Msa0470220:intron | 30.0% | |
| GAGAACAAGTACTAAAATAG+TGG | + | chr3_3:72298912-72298931 | None:intergenic | 30.0% | |
| ! | TCAAATGTAGATACTGATTG+GGG | - | chr3_3:72299017-72299036 | Msa0470220:intron | 30.0% |
| ! | TAATGAAGAGCACATAAATG+GGG | + | chr3_3:72299418-72299437 | None:intergenic | 30.0% |
| ! | GTAATGAAGAGCACATAAAT+GGG | + | chr3_3:72299419-72299438 | None:intergenic | 30.0% |
| ! | ATTTGGTATTGGAAAACAGT+TGG | + | chr3_3:72299441-72299460 | None:intergenic | 30.0% |
| ! | TTTTCTTGTCGCAAAATTGA+TGG | - | chr3_3:72299683-72299702 | Msa0470220:intron | 30.0% |
| TCTCATCAACAAGTATTACT+AGG | + | chr3_3:72299850-72299869 | None:intergenic | 30.0% | |
| !!! | TAAGCATCTTTTTCAGCTTT+GGG | + | chr3_3:72299947-72299966 | None:intergenic | 30.0% |
| AATGGAATTACAGCAAATTC+AGG | - | chr3_3:72299972-72299991 | Msa0470220:intron | 30.0% | |
| TCTCATTTATATGATCCATC+AGG | + | chr3_3:72300171-72300190 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCATATGTCT+TGG | + | chr3_3:72300259-72300278 | None:intergenic | 30.0% | |
| !! | TGAACTTCTTGAAGCATTTT+TGG | - | chr3_3:72300266-72300285 | Msa0470220:intron | 30.0% |
| !! | GAACTTCTTGAAGCATTTTT+GGG | - | chr3_3:72300267-72300286 | Msa0470220:intron | 30.0% |
| CAAATGAAAACCATGTTGTT+TGG | - | chr3_3:72300313-72300332 | Msa0470220:intron | 30.0% | |
| CAAAACTGTTGTAAAAGCTT+GGG | + | chr3_3:72300493-72300512 | None:intergenic | 30.0% | |
| AAATAGCAAACTACACAGAT+GGG | - | chr3_3:72300566-72300585 | Msa0470220:intron | 30.0% | |
| GTATAGATAATCTTTGTGAC+TGG | - | chr3_3:72300629-72300648 | Msa0470220:intron | 30.0% | |
| AGAAAAAATGGATAAAGGGA+AGG | - | chr3_3:72300840-72300859 | Msa0470220:intron | 30.0% | |
| AATGTGCAACAATCATAAAC+TGG | - | chr3_3:72301021-72301040 | Msa0470220:five_prime_UTR | 30.0% | |
| AAGAAAGAGGAATGTGAAGA+AGG | + | chr3_3:72296677-72296696 | None:intergenic | 35.0% | |
| CACAGATAGAAACAAGAAAG+AGG | + | chr3_3:72296690-72296709 | None:intergenic | 35.0% | |
| ! | GGAAAACAATATACCGATTG+AGG | + | chr3_3:72296747-72296766 | None:intergenic | 35.0% |
| CTGAATATGAGAGGAACAAT+GGG | - | chr3_3:72296967-72296986 | Msa0470220:CDS | 35.0% | |
| ! | TCATTTTCAAACCACATGAG+GGG | - | chr3_3:72297829-72297848 | Msa0470220:CDS | 35.0% |
| GTCATTTAGAAAAGACAGGA+AGG | + | chr3_3:72297893-72297912 | None:intergenic | 35.0% | |
| ! | CGTTGTCATTTAGAAAAGAC+AGG | + | chr3_3:72297897-72297916 | None:intergenic | 35.0% |
| AGTAGATGAGCAGCATTATT+AGG | - | chr3_3:72298089-72298108 | Msa0470220:CDS | 35.0% | |
| GTAGATGAGCAGCATTATTA+GGG | - | chr3_3:72298090-72298109 | Msa0470220:CDS | 35.0% | |
| AAGACAAGTGACATGCATTT+AGG | - | chr3_3:72298305-72298324 | Msa0470220:intron | 35.0% | |
| GTAGAGGAACATTACAAAAG+TGG | + | chr3_3:72298566-72298585 | None:intergenic | 35.0% | |
| TACAATACCACCCATTTAAC+AGG | - | chr3_3:72298598-72298617 | Msa0470220:CDS | 35.0% | |
| CATGAAACTTATGAAACTGG+GGG | - | chr3_3:72298669-72298688 | Msa0470220:CDS | 35.0% | |
| AATCATGAAACTTGGGAAAC+TGG | - | chr3_3:72298711-72298730 | Msa0470220:intron | 35.0% | |
| ATCATGAAACTTGGGAAACT+GGG | - | chr3_3:72298712-72298731 | Msa0470220:intron | 35.0% | |
| CCTGATTCAATTCAAATAGG+GGG | - | chr3_3:72298775-72298794 | Msa0470220:intron | 35.0% | |
| ACTTGTTCTCTTCTTAGCAT+AGG | - | chr3_3:72298922-72298941 | Msa0470220:intron | 35.0% | |
| CTTGTTCTCTTCTTAGCATA+GGG | - | chr3_3:72298923-72298942 | Msa0470220:intron | 35.0% | |
| TTGTTCTCTTCTTAGCATAG+GGG | - | chr3_3:72298924-72298943 | Msa0470220:intron | 35.0% | |
| ! | ATCTGTGCAATTTTGTGAAC+AGG | - | chr3_3:72298961-72298980 | Msa0470220:intron | 35.0% |
| ! | ATTTTGTGAACAGGTGGATA+TGG | - | chr3_3:72298970-72298989 | Msa0470220:intron | 35.0% |
| ! | TTTTGTGAACAGGTGGATAT+GGG | - | chr3_3:72298971-72298990 | Msa0470220:intron | 35.0% |
| TCTACATTTGATATGTACCG+AGG | + | chr3_3:72299008-72299027 | None:intergenic | 35.0% | |
| ACAACACTGAGATATCTAAC+TGG | - | chr3_3:72299111-72299130 | Msa0470220:CDS | 35.0% | |
| !! | ATATCCAGAATGGATTGATG+AGG | - | chr3_3:72299211-72299230 | Msa0470220:CDS | 35.0% |
| GTTAAGCTACCTTGTAAGAA+TGG | - | chr3_3:72299311-72299330 | Msa0470220:intron | 35.0% | |
| ! | GGTAATGAAGAGCACATAAA+TGG | + | chr3_3:72299420-72299439 | None:intergenic | 35.0% |
| ! | CAGGTAAACAGATTTGGTAT+TGG | + | chr3_3:72299452-72299471 | None:intergenic | 35.0% |
| TCTTTGCAGGTAAACAGATT+TGG | + | chr3_3:72299458-72299477 | None:intergenic | 35.0% | |
| TTTACCTGCAAAGAACTAGT+TGG | - | chr3_3:72299464-72299483 | Msa0470220:intron | 35.0% | |
| TCTCTCAAAACACTCAAGTT+TGG | + | chr3_3:72299518-72299537 | None:intergenic | 35.0% | |
| AATGAATTCAAACGCAGAAC+TGG | - | chr3_3:72299706-72299725 | Msa0470220:intron | 35.0% | |
| TGAATGCAGAATTGTTGCAT+AGG | + | chr3_3:72299759-72299778 | None:intergenic | 35.0% | |
| TCAGCTCATGTTTATGTTTG+TGG | - | chr3_3:72299776-72299795 | Msa0470220:intron | 35.0% | |
| !!! | AAGCATCTTTTTCAGCTTTG+GGG | + | chr3_3:72299946-72299965 | None:intergenic | 35.0% |
| !!! | GTAAGCATCTTTTTCAGCTT+TGG | + | chr3_3:72299948-72299967 | None:intergenic | 35.0% |
| !! | ATTACAGCAAATTCAGGTTG+TGG | - | chr3_3:72299978-72299997 | Msa0470220:intron | 35.0% |
| ATGCAGATTTACTCATACTC+AGG | - | chr3_3:72300035-72300054 | Msa0470220:intron | 35.0% | |
| !! | AGATTTTCTATTTGGGATGC+CGG | - | chr3_3:72300063-72300082 | Msa0470220:intron | 35.0% |
| !! | TCTTTTTAACTCTGGTGTCA+TGG | - | chr3_3:72300114-72300133 | Msa0470220:intron | 35.0% |
| AATGAGATTGAGTCCTACAA+TGG | - | chr3_3:72300184-72300203 | Msa0470220:intron | 35.0% | |
| AAATATTTACATGGTGGCAC+AGG | - | chr3_3:72300230-72300249 | Msa0470220:intron | 35.0% | |
| !!! | TTCTTGAAGCATTTTTGGGT+TGG | - | chr3_3:72300271-72300290 | Msa0470220:intron | 35.0% |
| TAGTGAAGCACATAGAGAAT+TGG | + | chr3_3:72300349-72300368 | None:intergenic | 35.0% | |
| CTCTATGTGCTTCACTATTT+AGG | - | chr3_3:72300352-72300371 | Msa0470220:intron | 35.0% | |
| ! | ACTATTTAGGTTTGAAGCCA+TGG | - | chr3_3:72300365-72300384 | Msa0470220:intron | 35.0% |
| GCAAAACTGTTGTAAAAGCT+TGG | + | chr3_3:72300494-72300513 | None:intergenic | 35.0% | |
| GAAATAGCAAACTACACAGA+TGG | - | chr3_3:72300565-72300584 | Msa0470220:intron | 35.0% | |
| TAAAGCAGAAAGAGATGACA+TGG | + | chr3_3:72300731-72300750 | None:intergenic | 35.0% | |
| ATCGATATTGTATGACTCTC+TGG | - | chr3_3:72300961-72300980 | Msa0470220:five_prime_UTR | 35.0% | |
| GAATGTGAAGAAGGTGATGT+AGG | + | chr3_3:72296668-72296687 | None:intergenic | 40.0% | |
| !! | TGCAAATTTGTTGCGCATGT+TGG | - | chr3_3:72296708-72296727 | Msa0470220:three_prime_UTR | 40.0% |
| ! | TGCAGAGATTTTGCATTGCA+TGG | - | chr3_3:72296936-72296955 | Msa0470220:CDS | 40.0% |
| GCTGAATATGAGAGGAACAA+TGG | - | chr3_3:72296966-72296985 | Msa0470220:CDS | 40.0% | |
| TAAGGAACTGACATGGATGA+AGG | + | chr3_3:72297030-72297049 | None:intergenic | 40.0% | |
| AAATGCGAAACTCACACACA+CGG | - | chr3_3:72297301-72297320 | Msa0470220:CDS | 40.0% | |
| AATACACGCATGCACCTAAT+AGG | - | chr3_3:72297774-72297793 | Msa0470220:CDS | 40.0% | |
| ! | GACAGGAAGGGTATATGATA+CGG | + | chr3_3:72297880-72297899 | None:intergenic | 40.0% |
| AGGAAGCTTAGCAAGATACT+AGG | - | chr3_3:72297954-72297973 | Msa0470220:intron | 40.0% | |
| CTCATCTACTTGACTAACTG+TGG | + | chr3_3:72298079-72298098 | None:intergenic | 40.0% | |
| TTTGCATGATGTTGGAGTTC+AGG | - | chr3_3:72298228-72298247 | Msa0470220:CDS | 40.0% | |
| TGGCGGAAATGGTTATCAAT+AGG | + | chr3_3:72298546-72298565 | None:intergenic | 40.0% | |
| ! | CATTACAAAAGTGGCGGAAA+TGG | + | chr3_3:72298557-72298576 | None:intergenic | 40.0% |
| GAGGAACATTACAAAAGTGG+CGG | + | chr3_3:72298563-72298582 | None:intergenic | 40.0% | |
| ! | TGTAAATCTCTGGAGAGTAG+AGG | + | chr3_3:72298582-72298601 | None:intergenic | 40.0% |
| TGGGTGGTATTGTAAATCTC+TGG | + | chr3_3:72298592-72298611 | None:intergenic | 40.0% | |
| TGCACTAGAGCCTGTTAAAT+GGG | + | chr3_3:72298611-72298630 | None:intergenic | 40.0% | |
| TTGCACTAGAGCCTGTTAAA+TGG | + | chr3_3:72298612-72298631 | None:intergenic | 40.0% | |
| ! | ATTTAACAGGCTCTAGTGCA+AGG | - | chr3_3:72298611-72298630 | Msa0470220:CDS | 40.0% |
| TCTAGTGCAAGGTATGTTTC+TGG | - | chr3_3:72298622-72298641 | Msa0470220:CDS | 40.0% | |
| TCATGAAACTTGGGAAACTG+GGG | - | chr3_3:72298713-72298732 | Msa0470220:intron | 40.0% | |
| CCCCCTATTTGAATTGAATC+AGG | + | chr3_3:72298778-72298797 | None:intergenic | 40.0% | |
| ! | TGTGCAATTTTGTGAACAGG+TGG | - | chr3_3:72298964-72298983 | Msa0470220:intron | 40.0% |
| TTTGTGAACAGGTGGATATG+GGG | - | chr3_3:72298972-72298991 | Msa0470220:intron | 40.0% | |
| TAGATGTAGAGCAACATGTG+TGG | + | chr3_3:72299156-72299175 | None:intergenic | 40.0% | |
| TCTTCCTCATCAATCCATTC+TGG | + | chr3_3:72299218-72299237 | None:intergenic | 40.0% | |
| ! | ATGAGATTGAGTCTTGTACC+AGG | + | chr3_3:72299287-72299306 | None:intergenic | 40.0% |
| CAGTTAGCTCCATTCTTACA+AGG | + | chr3_3:72299323-72299342 | None:intergenic | 40.0% | |
| CTTGTAAGAATGGAGCTAAC+TGG | - | chr3_3:72299321-72299340 | Msa0470220:intron | 40.0% | |
| TTCCTTTGAATGAGGTAGCA+AGG | + | chr3_3:72299391-72299410 | None:intergenic | 40.0% | |
| GGGGTAATTTCCTTTGAATG+AGG | + | chr3_3:72299399-72299418 | None:intergenic | 40.0% | |
| AAAGAACTAGTTGGACGTGA+AGG | - | chr3_3:72299473-72299492 | Msa0470220:intron | 40.0% | |
| TTGGACGTGAAGGAAATGTA+TGG | - | chr3_3:72299483-72299502 | Msa0470220:intron | 40.0% | |
| GAAAAAGTTCAGCTTCCAGT+TGG | - | chr3_3:72299536-72299555 | Msa0470220:intron | 40.0% | |
| AAGTTTGGGAATGTGAGAGA+TGG | + | chr3_3:72299615-72299634 | None:intergenic | 40.0% | |
| ATGCAAACGAGTGCAAGTTT+GGG | + | chr3_3:72299629-72299648 | None:intergenic | 40.0% | |
| ! | AACGCAGAACTGGTTTACAA+TGG | - | chr3_3:72299716-72299735 | Msa0470220:intron | 40.0% |
| ATTGTTGCATAGGCTTCTCT+TGG | + | chr3_3:72299749-72299768 | None:intergenic | 40.0% | |
| GCACAAAGCATAAGAATGTC+AGG | - | chr3_3:72299812-72299831 | Msa0470220:intron | 40.0% | |
| ! | CTTGTTGATGAGACAATCAG+TGG | - | chr3_3:72299857-72299876 | Msa0470220:intron | 40.0% |
| ATCAGTGGATATCACAGAAG+CGG | - | chr3_3:72299872-72299891 | Msa0470220:intron | 40.0% | |
| AAAAAGAGTGGCATCGTTAC+CGG | + | chr3_3:72300101-72300120 | None:intergenic | 40.0% | |
| !! | GATGCCACTCTTTTTAACTC+TGG | - | chr3_3:72300106-72300125 | Msa0470220:intron | 40.0% |
| GACACCAGAGTTAAAAAGAG+TGG | + | chr3_3:72300113-72300132 | None:intergenic | 40.0% | |
| !!! | TTTTAACTCTGGTGTCATGG+TGG | - | chr3_3:72300117-72300136 | Msa0470220:intron | 40.0% |
| AGCTGAAATGTGCAGTTTGA+TGG | + | chr3_3:72300148-72300167 | None:intergenic | 40.0% | |
| AGATTGAGTCCTACAATGGA+GGG | - | chr3_3:72300188-72300207 | Msa0470220:intron | 40.0% | |
| TGAAGCACATAGAGAATTGG+TGG | + | chr3_3:72300346-72300365 | None:intergenic | 40.0% | |
| TCAGGGACTATGATTGTAAC+TGG | - | chr3_3:72300395-72300414 | Msa0470220:intron | 40.0% | |
| !! | TGTAGTTTGCTATTTCCGCT+TGG | + | chr3_3:72300561-72300580 | None:intergenic | 40.0% |
| AGAGATGACATGGTAACTGT+GGG | + | chr3_3:72300721-72300740 | None:intergenic | 40.0% | |
| AAGAGATGACATGGTAACTG+TGG | + | chr3_3:72300722-72300741 | None:intergenic | 40.0% | |
| TATCCCATTAGAGATGGGAT+CGG | - | chr3_3:72300813-72300832 | Msa0470220:intron | 40.0% | |
| GGGATCGGCATAAGAAAAAA+TGG | - | chr3_3:72300828-72300847 | Msa0470220:intron | 40.0% | |
| TTGTATGACTCTCTGGTGTT+TGG | - | chr3_3:72300968-72300987 | Msa0470220:five_prime_UTR | 40.0% | |
| TGTATGACTCTCTGGTGTTT+GGG | - | chr3_3:72300969-72300988 | Msa0470220:five_prime_UTR | 40.0% | |
| ! | TATACCGATTGAGGTGTACG+TGG | + | chr3_3:72296738-72296757 | None:intergenic | 45.0% |
| GCTCTGTAGCTGAATATGAG+AGG | - | chr3_3:72296958-72296977 | Msa0470220:CDS | 45.0% | |
| ! | AGTCTAGCTTCAACAGAACG+AGG | + | chr3_3:72297000-72297019 | None:intergenic | 45.0% |
| TCACAATTGGGACTGTATGC+AGG | + | chr3_3:72297856-72297875 | None:intergenic | 45.0% | |
| ACTAGAGCCTGTTAAATGGG+TGG | + | chr3_3:72298608-72298627 | None:intergenic | 45.0% | |
| CATGAAACTTGGGAAACTGG+GGG | - | chr3_3:72298714-72298733 | Msa0470220:intron | 45.0% | |
| ATGCTGCAAACAGTGTGACA+TGG | - | chr3_3:72299180-72299199 | Msa0470220:CDS | 45.0% | |
| TGCTGCAAACAGTGTGACAT+GGG | - | chr3_3:72299181-72299200 | Msa0470220:CDS | 45.0% | |
| GGGAGTCTCTATATCCAGAA+TGG | - | chr3_3:72299201-72299220 | Msa0470220:CDS | 45.0% | |
| ! | ATCCGAGACTTGGTAGAGAA+GGG | + | chr3_3:72299262-72299281 | None:intergenic | 45.0% |
| ! | ACGTCCAACTAGTTCTTTGC+AGG | + | chr3_3:72299471-72299490 | None:intergenic | 45.0% |
| GCAAGTTCACATGATCCAAC+TGG | + | chr3_3:72299554-72299573 | None:intergenic | 45.0% | |
| GAACTTGCACTTCCTATGAG+AGG | - | chr3_3:72299566-72299585 | Msa0470220:intron | 45.0% | |
| AACATACCTCTGCCTCTCAT+AGG | + | chr3_3:72299581-72299600 | None:intergenic | 45.0% | |
| CATGCAAACGAGTGCAAGTT+TGG | + | chr3_3:72299630-72299649 | None:intergenic | 45.0% | |
| TATGCTTTGTGCTGCAGCTA+TGG | + | chr3_3:72299804-72299823 | None:intergenic | 45.0% | |
| TGGATATCACAGAAGCGGTT+TGG | - | chr3_3:72299877-72299896 | Msa0470220:intron | 45.0% | |
| TTACCGGTAGCAGTGATTTC+CGG | + | chr3_3:72300085-72300104 | None:intergenic | 45.0% | |
| GAGATTGAGTCCTACAATGG+AGG | - | chr3_3:72300187-72300206 | Msa0470220:intron | 45.0% | |
| GATTGAGTCCTACAATGGAG+GGG | - | chr3_3:72300189-72300208 | Msa0470220:intron | 45.0% | |
| !!! | GCATTTTTGGGTTGGTGATG+AGG | - | chr3_3:72300279-72300298 | Msa0470220:intron | 45.0% |
| TGAAGCCATGGTTATGCTTC+AGG | - | chr3_3:72300377-72300396 | Msa0470220:intron | 45.0% | |
| GAAGCCATGGTTATGCTTCA+GGG | - | chr3_3:72300378-72300397 | Msa0470220:intron | 45.0% | |
| TAGTCCCTGAAGCATAACCA+TGG | + | chr3_3:72300385-72300404 | None:intergenic | 45.0% | |
| GTGATGTAGCACATGCAAAG+TGG | - | chr3_3:72300446-72300465 | Msa0470220:intron | 45.0% | |
| ATGTAGCACATGCAAAGTGG+TGG | - | chr3_3:72300449-72300468 | Msa0470220:intron | 45.0% | |
| ! | CCTTCTGCTTTGACTTCAAC+AGG | + | chr3_3:72300516-72300535 | None:intergenic | 45.0% |
| CCTGTTGAAGTCAAAGCAGA+AGG | - | chr3_3:72300513-72300532 | Msa0470220:intron | 45.0% | |
| ! | GCACTGGCGAATCAAAGTTA+AGG | - | chr3_3:72300588-72300607 | Msa0470220:intron | 45.0% |
| ! | GTGACTGGAAAAGCATGTTG+CGG | - | chr3_3:72300644-72300663 | Msa0470220:CDS | 45.0% |
| ! | GAAAAGCATGTTGCGGCATT+GGG | - | chr3_3:72300651-72300670 | Msa0470220:CDS | 45.0% |
| ! | AAAAGCATGTTGCGGCATTG+GGG | - | chr3_3:72300652-72300671 | Msa0470220:CDS | 45.0% |
| ATGCCGATCCCATCTCTAAT+GGG | + | chr3_3:72300819-72300838 | None:intergenic | 45.0% | |
| TATGCCGATCCCATCTCTAA+TGG | + | chr3_3:72300820-72300839 | None:intergenic | 45.0% | |
| !!! | TTTATTTAAGTTTTTATATA+TGG | + | chr3_3:72297515-72297534 | None:intergenic | 5.0% |
| !!! | ATTAAAATTTTCATATATAA+CGG | - | chr3_3:72298835-72298854 | Msa0470220:intron | 5.0% |
| AGCACCACGTACACCTCAAT+CGG | - | chr3_3:72296731-72296750 | Msa0470220:three_prime_UTR | 50.0% | |
| !! | GGATGCAGACTTGATAACGC+TGG | + | chr3_3:72298058-72298077 | None:intergenic | 50.0% |
| AAACTGGGGGACTGAAATCC+TGG | - | chr3_3:72298727-72298746 | Msa0470220:intron | 50.0% | |
| CTTGGTAGAGAAGGGCAAAC+AGG | + | chr3_3:72299254-72299273 | None:intergenic | 50.0% | |
| TGCCCTTCTCTACCAAGTCT+CGG | - | chr3_3:72299257-72299276 | Msa0470220:intron | 50.0% | |
| ! | GATCCGAGACTTGGTAGAGA+AGG | + | chr3_3:72299263-72299282 | None:intergenic | 50.0% |
| GGCCTTGCTACCTCATTCAA+AGG | - | chr3_3:72299386-72299405 | Msa0470220:intron | 50.0% | |
| ATGCCGGAAATCACTGCTAC+CGG | - | chr3_3:72300079-72300098 | Msa0470220:intron | 50.0% | |
| CTGCACATTTCAGCTCCTGA+TGG | - | chr3_3:72300153-72300172 | Msa0470220:intron | 50.0% | |
| TGGCTCAGCACCAAACAACA+TGG | + | chr3_3:72300326-72300345 | None:intergenic | 50.0% | |
| ! | AGCACATGCAAAGTGGTGGA+AGG | - | chr3_3:72300453-72300472 | Msa0470220:intron | 50.0% |
| ! | GTCAAAGCAGAAGGCACAGT+TGG | - | chr3_3:72300522-72300541 | Msa0470220:intron | 50.0% |
| CAAACTACACAGATGGGCAC+TGG | - | chr3_3:72300572-72300591 | Msa0470220:intron | 50.0% | |
| ! | GGAAAAGCATGTTGCGGCAT+TGG | - | chr3_3:72300650-72300669 | Msa0470220:CDS | 50.0% |
| ! | ATGGTAACTGTGGGAGGTGT+TGG | + | chr3_3:72300712-72300731 | None:intergenic | 50.0% |
| GATGACATGGTAACTGTGGG+AGG | + | chr3_3:72300718-72300737 | None:intergenic | 50.0% | |
| TGTATGCAGGTCCCCTCATG+TGG | + | chr3_3:72297843-72297862 | None:intergenic | 55.0% | |
| GTGAACAGGTGGATATGGGG+TGG | - | chr3_3:72298975-72298994 | Msa0470220:intron | 55.0% | |
| TATGGGGTGGCTCAGATCCT+CGG | - | chr3_3:72298988-72299007 | Msa0470220:intron | 55.0% | |
| CTACCAAGTCTCGGATCTCC+TGG | - | chr3_3:72299266-72299285 | Msa0470220:intron | 55.0% | |
| GTACCAGGAGATCCGAGACT+TGG | + | chr3_3:72299272-72299291 | None:intergenic | 55.0% | |
| GCACTTCCTATGAGAGGCAG+AGG | - | chr3_3:72299572-72299591 | Msa0470220:intron | 55.0% | |
| ! | AGAAGCGGTTTGGAAGCAGC+AGG | - | chr3_3:72299887-72299906 | Msa0470220:intron | 55.0% |
| ! | GAAGCGGTTTGGAAGCAGCA+GGG | - | chr3_3:72299888-72299907 | Msa0470220:intron | 55.0% |
| TTTGGAAGCAGCAGGGTGGA+AGG | - | chr3_3:72299895-72299914 | Msa0470220:intron | 55.0% | |
| TCCTACAATGGAGGGGACCA+AGG | - | chr3_3:72300196-72300215 | Msa0470220:intron | 55.0% | |
| CCTACAATGGAGGGGACCAA+GGG | - | chr3_3:72300197-72300216 | Msa0470220:intron | 55.0% | |
| ! | AGCAGAAGGCACAGTTGGAG+TGG | - | chr3_3:72300527-72300546 | Msa0470220:intron | 55.0% |
| ! | GCAGAAGGCACAGTTGGAGT+GGG | - | chr3_3:72300528-72300547 | Msa0470220:intron | 55.0% |
| ! | GGCATTGGGGAGAGAGTAAC+TGG | - | chr3_3:72300665-72300684 | Msa0470220:CDS | 55.0% |
| CCCTTGGTCCCCTCCATTGT+AGG | + | chr3_3:72300200-72300219 | None:intergenic | 60.0% | |
| GGAGTGGGATCGAAGCCAAG+CGG | - | chr3_3:72300543-72300562 | Msa0470220:intron | 60.0% | |
| CACCTGCAGCTTGCAGCTGC+TGG | - | chr3_3:72299365-72299384 | Msa0470220:intron | 65.0% | |
| ! | GCGGTTTGGAAGCAGCAGGG+TGG | - | chr3_3:72299891-72299910 | Msa0470220:intron | 65.0% |
| GGCCAGCAGCTGCAAGCTGC+AGG | + | chr3_3:72299370-72299389 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72296618 | 72301058 | 72296618 | ID=Msa0470220;Name=Msa0470220 |
| chr3_3 | mRNA | 72296618 | 72301058 | 72296618 | ID=Msa0470220-mRNA-1;Parent=Msa0470220;Name=Msa0470220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=167|0.5|0.42|1|0|0|7|305|606 |
| chr3_3 | exon | 72296618 | 72297953 | 72296618 | ID=Msa0470220-mRNA-1:exon:18028;Parent=Msa0470220-mRNA-1 |
| chr3_3 | exon | 72298083 | 72298295 | 72298083 | ID=Msa0470220-mRNA-1:exon:18027;Parent=Msa0470220-mRNA-1 |
| chr3_3 | exon | 72298317 | 72298483 | 72298317 | ID=Msa0470220-mRNA-1:exon:18026;Parent=Msa0470220-mRNA-1 |
| chr3_3 | exon | 72298499 | 72298693 | 72298499 | ID=Msa0470220-mRNA-1:exon:18025;Parent=Msa0470220-mRNA-1 |
| chr3_3 | exon | 72299101 | 72299250 | 72299101 | ID=Msa0470220-mRNA-1:exon:18024;Parent=Msa0470220-mRNA-1 |
| chr3_3 | exon | 72300639 | 72300735 | 72300639 | ID=Msa0470220-mRNA-1:exon:18023;Parent=Msa0470220-mRNA-1 |
| chr3_3 | exon | 72300924 | 72301058 | 72300924 | ID=Msa0470220-mRNA-1:exon:18022;Parent=Msa0470220-mRNA-1 |
| chr3_3 | five_prime_UTR | 72300924 | 72301058 | 72300924 | ID=Msa0470220-mRNA-1:five_prime_utr;Parent=Msa0470220-mRNA-1 |
| chr3_3 | five_prime_UTR | 72300704 | 72300735 | 72300704 | ID=Msa0470220-mRNA-1:five_prime_utr;Parent=Msa0470220-mRNA-1 |
| chr3_3 | CDS | 72300639 | 72300703 | 72300639 | ID=Msa0470220-mRNA-1:cds;Parent=Msa0470220-mRNA-1 |
| chr3_3 | CDS | 72299101 | 72299250 | 72299101 | ID=Msa0470220-mRNA-1:cds;Parent=Msa0470220-mRNA-1 |
| chr3_3 | CDS | 72298499 | 72298693 | 72298499 | ID=Msa0470220-mRNA-1:cds;Parent=Msa0470220-mRNA-1 |
| chr3_3 | CDS | 72298317 | 72298483 | 72298317 | ID=Msa0470220-mRNA-1:cds;Parent=Msa0470220-mRNA-1 |
| chr3_3 | CDS | 72298083 | 72298295 | 72298083 | ID=Msa0470220-mRNA-1:cds;Parent=Msa0470220-mRNA-1 |
| chr3_3 | CDS | 72296923 | 72297953 | 72296923 | ID=Msa0470220-mRNA-1:cds;Parent=Msa0470220-mRNA-1 |
| chr3_3 | three_prime_UTR | 72296618 | 72296922 | 72296618 | ID=Msa0470220-mRNA-1:three_prime_utr;Parent=Msa0470220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
