Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621160 | XP_003602583.1 | 94.154 | 650 | 13 | 3 | 60 | 697 | 1 | 637 | 0.0 | 1245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621160 | sp|Q9LSB1|GUX1_ARATH | 64.427 | 655 | 187 | 8 | 72 | 697 | 17 | 654 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081250 | Msa0621160 | 0.806545 | 7.807720e-50 | -8.615850e-47 |
| Msa0621160 | Msa1412710 | 0.806587 | 7.651618e-50 | -8.615850e-47 |
| Msa0621160 | Msa1451630 | 0.963729 | 1.921621e-122 | -8.615850e-47 |
| Msa0193850 | Msa0621160 | 0.841923 | 3.538665e-58 | -8.615850e-47 |
| Msa0235710 | Msa0621160 | 0.815184 | 1.052604e-51 | -8.615850e-47 |
| Msa0470220 | Msa0621160 | 0.987489 | 1.927658e-170 | -8.615850e-47 |
| Msa0314170 | Msa0621160 | 0.825034 | 5.840842e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621160 | MtrunA17_Chr3g0129911 | 94.154 | 650 | 13 | 3 | 60 | 697 | 1 | 637 | 0.0 | 1245 |
| Msa0621160 | MtrunA17_Chr1g0159301 | 64.571 | 652 | 204 | 9 | 65 | 697 | 3 | 646 | 0.0 | 854 |
| Msa0621160 | MtrunA17_Chr1g0153481 | 47.835 | 485 | 218 | 10 | 200 | 653 | 108 | 588 | 2.79e-156 | 464 |
| Msa0621160 | MtrunA17_Chr1g0153471 | 45.181 | 498 | 243 | 11 | 182 | 653 | 91 | 584 | 7.15e-142 | 427 |
| Msa0621160 | MtrunA17_Chr1g0191821 | 44.708 | 463 | 208 | 8 | 229 | 656 | 102 | 551 | 4.99e-134 | 406 |
| Msa0621160 | MtrunA17_Chr7g0272921 | 39.057 | 530 | 261 | 11 | 176 | 659 | 48 | 561 | 1.02e-131 | 400 |
| Msa0621160 | MtrunA17_Chr1g0190421 | 35.802 | 162 | 103 | 1 | 366 | 527 | 27 | 187 | 9.63e-28 | 118 |
| Msa0621160 | MtrunA17_Chr7g0274421 | 35.119 | 168 | 108 | 1 | 360 | 527 | 30 | 196 | 1.92e-27 | 117 |
| Msa0621160 | MtrunA17_Chr7g0270281 | 28.079 | 203 | 107 | 3 | 363 | 526 | 23 | 225 | 5.39e-17 | 83.2 |
| Msa0621160 | MtrunA17_Chr1g0193011 | 27.481 | 262 | 134 | 9 | 359 | 576 | 16 | 265 | 6.85e-16 | 79.3 |
| Msa0621160 | MtrunA17_Chr4g0074911 | 35.043 | 117 | 73 | 1 | 362 | 475 | 20 | 136 | 2.14e-15 | 75.9 |
| Msa0621160 | MtrunA17_Chr5g0399211 | 28.000 | 175 | 111 | 5 | 364 | 526 | 50 | 221 | 2.69e-14 | 75.9 |
| Msa0621160 | MtrunA17_Chr7g0271581 | 24.016 | 254 | 139 | 7 | 366 | 576 | 43 | 285 | 1.45e-12 | 69.7 |
| Msa0621160 | MtrunA17_Chr4g0056181 | 26.163 | 172 | 118 | 4 | 364 | 526 | 37 | 208 | 1.61e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621160 | AT3G18660.2 | 64.427 | 655 | 187 | 8 | 72 | 697 | 17 | 654 | 0.0 | 853 |
| Msa0621160 | AT3G18660.1 | 63.969 | 655 | 186 | 8 | 72 | 697 | 17 | 650 | 0.0 | 846 |
| Msa0621160 | AT3G18660.3 | 63.817 | 655 | 186 | 8 | 72 | 697 | 17 | 649 | 0.0 | 843 |
| Msa0621160 | AT1G77130.1 | 60.190 | 633 | 190 | 11 | 64 | 673 | 1 | 594 | 0.0 | 751 |
| Msa0621160 | AT4G33330.5 | 49.794 | 486 | 210 | 11 | 200 | 656 | 43 | 523 | 9.26e-162 | 476 |
| Msa0621160 | AT4G33330.1 | 49.794 | 486 | 210 | 11 | 200 | 656 | 111 | 591 | 6.39e-161 | 477 |
| Msa0621160 | AT4G33330.4 | 49.794 | 486 | 210 | 11 | 200 | 656 | 122 | 602 | 1.14e-160 | 476 |
| Msa0621160 | AT4G33330.2 | 49.693 | 489 | 212 | 11 | 200 | 659 | 111 | 594 | 1.33e-160 | 477 |
| Msa0621160 | AT1G08990.1 | 43.673 | 490 | 235 | 10 | 200 | 655 | 79 | 561 | 1.74e-134 | 408 |
| Msa0621160 | AT1G54940.1 | 44.219 | 493 | 220 | 13 | 200 | 653 | 74 | 550 | 7.74e-130 | 395 |
| Msa0621160 | AT4G33330.3 | 48.571 | 350 | 147 | 10 | 200 | 520 | 122 | 467 | 1.57e-98 | 311 |
| Msa0621160 | AT5G18480.1 | 36.095 | 169 | 107 | 1 | 358 | 526 | 24 | 191 | 2.22e-29 | 123 |
| Msa0621160 | AT1G60470.1 | 25.987 | 304 | 161 | 10 | 350 | 608 | 9 | 293 | 1.14e-17 | 85.5 |
| Msa0621160 | AT1G60450.1 | 27.053 | 207 | 110 | 3 | 361 | 526 | 15 | 221 | 2.51e-16 | 81.3 |
| Msa0621160 | AT1G56600.1 | 26.357 | 258 | 133 | 7 | 364 | 576 | 21 | 266 | 8.04e-16 | 79.7 |
| Msa0621160 | AT1G09350.1 | 26.108 | 203 | 110 | 3 | 364 | 526 | 15 | 217 | 2.22e-15 | 78.6 |
| Msa0621160 | AT4G26250.1 | 25.806 | 217 | 120 | 4 | 364 | 539 | 24 | 240 | 2.44e-15 | 78.6 |
| Msa0621160 | AT5G30500.2 | 25.123 | 203 | 112 | 3 | 361 | 523 | 21 | 223 | 2.33e-14 | 73.9 |
| Msa0621160 | AT5G30500.1 | 32.203 | 118 | 77 | 1 | 361 | 475 | 21 | 138 | 2.06e-13 | 72.4 |
| Msa0621160 | AT2G47180.1 | 34.211 | 114 | 72 | 1 | 366 | 476 | 31 | 144 | 3.13e-13 | 72.0 |
| Msa0621160 | AT4G16600.1 | 25.989 | 177 | 114 | 6 | 364 | 527 | 58 | 230 | 2.47e-11 | 67.0 |
| Msa0621160 | AT2G35710.4 | 23.810 | 210 | 145 | 5 | 330 | 527 | 28 | 234 | 2.54e-11 | 65.9 |
| Msa0621160 | AT2G35710.1 | 23.810 | 210 | 145 | 5 | 330 | 527 | 28 | 234 | 9.67e-11 | 65.1 |
Find 152 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACAATATCGATTCATTT+AGG | 0.151662 | 4_2:+73095537 | None:intergenic |
| CTCTATGTGCTTCACTATTT+AGG | 0.175807 | 4_2:-73096137 | Msa0621160:CDS |
| GGTAATGAAGAGCACATAAA+TGG | 0.238422 | 4_2:+73097072 | None:intergenic |
| TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | 4_2:-73096112 | Msa0621160:CDS |
| TCTTCCTCATCAATCCATTC+TGG | 0.258883 | 4_2:+73097274 | None:intergenic |
| TTGCACTAGAGCCTGTTAAA+TGG | 0.289954 | 4_2:+73097882 | None:intergenic |
| TACAATACCACCCATTTAAC+AGG | 0.292959 | 4_2:-73097893 | Msa0621160:CDS |
| TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | 4_2:-73096713 | Msa0621160:CDS |
| TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | 4_2:+73096407 | None:intergenic |
| TGCATCTTAAGTTTCTATCT+TGG | 0.305792 | 4_2:+73097993 | None:intergenic |
| CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | 4_2:+73095976 | None:intergenic |
| AATGGAATTACAGCAAATTC+AGG | 0.311462 | 4_2:-73096517 | Msa0621160:CDS |
| TTGTATGACTCTCTGGTGTT+TGG | 0.314890 | 4_2:-73095521 | Msa0621160:three_prime_UTR |
| TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | 4_2:+73096974 | None:intergenic |
| ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | 4_2:+73097021 | None:intergenic |
| TTTGTTGTGAAACTTATAAT+AGG | 0.339384 | 4_2:+73095706 | None:intergenic |
| ATACAATATCGATTCATTTA+GGG | 0.346571 | 4_2:+73095538 | None:intergenic |
| TATGCCGATCCCATCTCTAA+TGG | 0.351875 | 4_2:+73095672 | None:intergenic |
| GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | 4_2:-73095838 | Msa0621160:CDS |
| TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | 4_2:+73097034 | None:intergenic |
| CATTACAAAAGTGGCGGAAA+TGG | 0.368832 | 4_2:+73097937 | None:intergenic |
| CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | 4_2:+73097040 | None:intergenic |
| TGTATGACTCTCTGGTGTTT+GGG | 0.383721 | 4_2:-73095520 | Msa0621160:three_prime_UTR |
| GAATTAATTGATAGCATTGT+TGG | 0.389069 | 4_2:+73099850 | None:intergenic |
| ATCAAATGTAGATACTGATT+GGG | 0.390328 | 4_2:-73097473 | Msa0621160:CDS |
| AATTAATTGATAGCATTGTT+GGG | 0.402805 | 4_2:+73099851 | None:intergenic |
| TATCAAATGTAGATACTGAT+TGG | 0.406559 | 4_2:-73097474 | Msa0621160:CDS |
| TCAGGGACTATGATTGTAAC+TGG | 0.408838 | 4_2:-73096094 | Msa0621160:CDS |
| AATGTGCAACAATCATAAAC+TGG | 0.410467 | 4_2:-73095468 | Msa0621160:three_prime_UTR |
| GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | 4_2:-73095839 | Msa0621160:CDS |
| TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | 4_2:+73096688 | None:intergenic |
| CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | 4_2:-73097168 | Msa0621160:CDS |
| GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | 4_2:-73095824 | Msa0621160:CDS |
| ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | 4_2:+73096743 | None:intergenic |
| GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | 4_2:+73095998 | None:intergenic |
| CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | 4_2:+73096292 | None:intergenic |
| TGGCGGAAATGGTTATCAAT+AGG | 0.431528 | 4_2:+73097948 | None:intergenic |
| TGGATATCACAGAAGCGGTT+TGG | 0.440256 | 4_2:-73096612 | Msa0621160:CDS |
| TGCACTAGAGCCTGTTAAAT+GGG | 0.445408 | 4_2:+73097883 | None:intergenic |
| ATGCCGATCCCATCTCTAAT+GGG | 0.445955 | 4_2:+73095673 | None:intergenic |
| TGGGTGGTATTGTAAATCTC+TGG | 0.456085 | 4_2:+73097902 | None:intergenic |
| CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | 4_2:+73097238 | None:intergenic |
| ATCGATATTGTATGACTCTC+TGG | 0.458383 | 4_2:-73095528 | Msa0621160:three_prime_UTR |
| ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | 4_2:-73096124 | Msa0621160:CDS |
| GAATGTGAAGAAGGTGATGT+AGG | 0.462933 | 4_2:+73099828 | None:intergenic |
| GTAATGAAGAGCACATAAAT+GGG | 0.464788 | 4_2:+73097073 | None:intergenic |
| ACAACACTGAGATATCTAAC+TGG | 0.465253 | 4_2:-73097378 | Msa0621160:CDS |
| TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | 4_2:+73096233 | None:intergenic |
| CAAATGAAAACCATGTTGTT+TGG | 0.468309 | 4_2:-73096176 | Msa0621160:CDS |
| GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | 4_2:-73095967 | Msa0621160:CDS |
| CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | 4_2:-73097223 | Msa0621160:CDS |
| AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | 4_2:+73096344 | None:intergenic |
| CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | 4_2:+73095999 | None:intergenic |
| TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | 4_2:+73096143 | None:intergenic |
| CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | 4_2:+73097169 | None:intergenic |
| AAGAAAGAGGAATGTGAAGA+AGG | 0.480068 | 4_2:+73099819 | None:intergenic |
| GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | 4_2:-73097178 | Msa0621160:CDS |
| TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | 4_2:-73097232 | Msa0621160:CDS |
| CTGAATATGAGAGGAACAAT+GGG | 0.489156 | 4_2:-73099525 | Msa0621160:CDS |
| GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | 4_2:-73096111 | Msa0621160:CDS |
| GCACAAAGCATAAGAATGTC+AGG | 0.490485 | 4_2:-73096677 | Msa0621160:CDS |
| GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | 4_2:+73097229 | None:intergenic |
| TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | 4_2:-73097025 | Msa0621160:CDS |
| GCAAGTTCACATGATCCAAC+TGG | 0.492733 | 4_2:+73096938 | None:intergenic |
| GGAAAACAATATACCGATTG+AGG | 0.497061 | 4_2:+73099748 | None:intergenic |
| TCTCATTTATATGATCCATC+AGG | 0.500815 | 4_2:+73096321 | None:intergenic |
| ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | 4_2:+73095780 | None:intergenic |
| ATATTTCATTCAAATACCCT+TGG | 0.517914 | 4_2:+73096276 | None:intergenic |
| AAATTGTGAAGGAAGTTACT+TGG | 0.522554 | 4_2:-73099903 | Msa0621160:CDS |
| TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | 4_2:+73097101 | None:intergenic |
| AGCACCACGTACACCTCAAT+CGG | 0.523813 | 4_2:-73099761 | Msa0621160:intron |
| TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | 4_2:+73095931 | None:intergenic |
| AAATATTTACATGGTGGCAC+AGG | 0.525162 | 4_2:-73096259 | Msa0621160:CDS |
| TAAGGAACTGACATGGATGA+AGG | 0.528957 | 4_2:+73099465 | None:intergenic |
| CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | 4_2:-73096336 | Msa0621160:CDS |
| CACAGATAGAAACAAGAAAG+AGG | 0.530154 | 4_2:+73099806 | None:intergenic |
| ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | 4_2:-73096511 | Msa0621160:CDS |
| AACATACCTCTGCCTCTCAT+AGG | 0.531287 | 4_2:+73096911 | None:intergenic |
| GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | 4_2:-73097288 | Msa0621160:CDS |
| GTATAGATAATCTTTGTGAC+TGG | 0.535311 | 4_2:-73095860 | Msa0621160:CDS |
| GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | 4_2:-73095901 | Msa0621160:CDS |
| GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | 4_2:+73097093 | None:intergenic |
| TCCTACAATGGAGGGGACCA+AGG | 0.538011 | 4_2:-73096293 | Msa0621160:CDS |
| ATGCAGATTTACTCATACTC+AGG | 0.538087 | 4_2:-73096454 | Msa0621160:CDS |
| ATTTGAATGAAATATTTACA+TGG | 0.539540 | 4_2:-73096268 | Msa0621160:CDS |
| GAAATAGCAAACTACACAGA+TGG | 0.541544 | 4_2:-73095924 | Msa0621160:CDS |
| ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | 4_2:+73097051 | None:intergenic |
| ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | 4_2:-73096410 | Msa0621160:CDS |
| TGAAGCACATAGAGAATTGG+TGG | 0.546520 | 4_2:+73096146 | None:intergenic |
| TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | 4_2:-73097006 | Msa0621160:CDS |
| AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | 4_2:-73096602 | Msa0621160:CDS |
| AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | 4_2:-73095962 | Msa0621160:CDS |
| TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | 4_2:-73096594 | Msa0621160:CDS |
| TGAAGATTTATACAAGAGAA+AGG | 0.550106 | 4_2:-73098065 | Msa0621160:CDS |
| TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | 4_2:-73097501 | Msa0621160:CDS |
| TCTCATCAACAAGTATTACT+AGG | 0.558372 | 4_2:+73096642 | None:intergenic |
| GTACCAGGAGATCCGAGACT+TGG | 0.558725 | 4_2:+73097220 | None:intergenic |
| ATTAATTGATAGCATTGTTG+GGG | 0.561261 | 4_2:+73099852 | None:intergenic |
| AGATTGAGTCCTACAATGGA+GGG | 0.566288 | 4_2:-73096301 | Msa0621160:CDS |
| CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | 4_2:-73095976 | Msa0621160:CDS |
| GCTGAATATGAGAGGAACAA+TGG | 0.571145 | 4_2:-73099526 | Msa0621160:CDS |
| GTAGAGGAACATTACAAAAG+TGG | 0.573234 | 4_2:+73097928 | None:intergenic |
| TATCCCATTAGAGATGGGAT+CGG | 0.576473 | 4_2:-73095676 | Msa0621160:three_prime_UTR |
| GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | 4_2:-73097103 | Msa0621160:CDS |
| ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | 4_2:+73097230 | None:intergenic |
| TCTTGGATAGATAAGTTGAA+AGG | 0.588178 | 4_2:+73098010 | None:intergenic |
| GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | 4_2:-73095961 | Msa0621160:CDS |
| AACGCAGAACTGGTTTACAA+TGG | 0.591344 | 4_2:-73096773 | Msa0621160:intron |
| GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | 4_2:-73096917 | Msa0621160:intron |
| CAAACTACACAGATGGGCAC+TGG | 0.597035 | 4_2:-73095917 | Msa0621160:CDS |
| AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | 4_2:-73097016 | Msa0621160:CDS |
| GAGATTGAGTCCTACAATGG+AGG | 0.602635 | 4_2:-73096302 | Msa0621160:CDS |
| ATTTAACAGGCTCTAGTGCA+AGG | 0.604649 | 4_2:-73097880 | Msa0621160:intron |
| AAATAGCAAACTACACAGAT+GGG | 0.605901 | 4_2:-73095923 | Msa0621160:CDS |
| TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | 4_2:+73096733 | None:intergenic |
| AATGAGATTGAGTCCTACAA+TGG | 0.611979 | 4_2:-73096305 | Msa0621160:CDS |
| GTGAACAGGTGGATATGGGG+TGG | 0.612033 | 4_2:-73097514 | Msa0621160:CDS |
| AAGAGATGACATGGTAACTG+TGG | 0.612180 | 4_2:+73095770 | None:intergenic |
| TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | 4_2:-73097308 | Msa0621160:intron |
| TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | 4_2:+73095761 | None:intergenic |
| ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | 4_2:+73097205 | None:intergenic |
| AGAGATGACATGGTAACTGT+GGG | 0.623896 | 4_2:+73095771 | None:intergenic |
| TGGCTCAGCACCAAACAACA+TGG | 0.624342 | 4_2:+73096166 | None:intergenic |
| ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | 4_2:-73097309 | Msa0621160:intron |
| ATATCCAGAATGGATTGATG+AGG | 0.627762 | 4_2:-73097278 | Msa0621160:CDS |
| AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | 4_2:-73095837 | Msa0621160:CDS |
| ATCAGTGGATATCACAGAAG+CGG | 0.632224 | 4_2:-73096617 | Msa0621160:CDS |
| CTTGTTGATGAGACAATCAG+TGG | 0.634716 | 4_2:-73096632 | Msa0621160:CDS |
| TTTGTGAACAGGTGGATATG+GGG | 0.635856 | 4_2:-73097517 | Msa0621160:CDS |
| TGTAAATCTCTGGAGAGTAG+AGG | 0.638062 | 4_2:+73097912 | None:intergenic |
| TGAATGAAATATTTACATGG+TGG | 0.649910 | 4_2:-73096265 | Msa0621160:CDS |
| CCTACAATGGAGGGGACCAA+GGG | 0.651743 | 4_2:-73096292 | Msa0621160:CDS |
| GCTCTGTAGCTGAATATGAG+AGG | 0.662782 | 4_2:-73099534 | Msa0621160:intron |
| GAGGAACATTACAAAAGTGG+CGG | 0.663674 | 4_2:+73097931 | None:intergenic |
| TCAAATGTAGATACTGATTG+GGG | 0.666900 | 4_2:-73097472 | Msa0621160:CDS |
| ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | 4_2:-73096040 | Msa0621160:CDS |
| AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | 4_2:-73096036 | Msa0621160:CDS |
| GATTGAGTCCTACAATGGAG+GGG | 0.670790 | 4_2:-73096300 | Msa0621160:CDS |
| GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | 4_2:-73096601 | Msa0621160:CDS |
| GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | 4_2:-73096598 | Msa0621160:CDS |
| GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | 4_2:-73095845 | Msa0621160:CDS |
| ACTAGAGCCTGTTAAATGGG+TGG | 0.681890 | 4_2:+73097886 | None:intergenic |
| TATACCGATTGAGGTGTACG+TGG | 0.689087 | 4_2:+73099757 | None:intergenic |
| TAATGAAGAGCACATAAATG+GGG | 0.692136 | 4_2:+73097074 | None:intergenic |
| GAACTTGCACTTCCTATGAG+AGG | 0.692338 | 4_2:-73096923 | Msa0621160:CDS |
| TAGATGTAGAGCAACATGTG+TGG | 0.702518 | 4_2:+73097336 | None:intergenic |
| TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | 4_2:+73096107 | None:intergenic |
| TCTACATTTGATATGTACCG+AGG | 0.712296 | 4_2:+73097484 | None:intergenic |
| AGTCTAGCTTCAACAGAACG+AGG | 0.720197 | 4_2:+73099495 | None:intergenic |
| GATGACATGGTAACTGTGGG+AGG | 0.721623 | 4_2:+73095774 | None:intergenic |
| GTGATGTAGCACATGCAAAG+TGG | 0.727257 | 4_2:-73096043 | Msa0621160:CDS |
| GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | 4_2:-73095946 | Msa0621160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTTCATATATAAC+GGG | - | chr4_2:73097710-73097729 | Msa0621160:intron | 10.0% |
| !!! | ACATTTTTTATTCTTAAAAA+TGG | - | chr4_2:73099754-73099773 | Msa0621160:intron | 10.0% |
| !! | TATTGAAAACTAAATTAAAC+TGG | + | chr4_2:73095717-73095736 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGAAAGAAA+AGG | + | chr4_2:73095950-73095969 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTATATATGGA+TGG | + | chr4_2:73096382-73096401 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAACTCATTAT+TGG | + | chr4_2:73096435-73096454 | None:intergenic | 15.0% |
| !! | ATCAGTATTCAATATTAAAA+AGG | - | chr4_2:73096484-73096503 | Msa0621160:CDS | 15.0% |
| !!! | TAAATTATTTGTTATGAACA+AGG | + | chr4_2:73096552-73096571 | None:intergenic | 15.0% |
| !!! | GTTTTGTAAATTAATATAGT+TGG | + | chr4_2:73096988-73097007 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCATGAAACT+TGG | - | chr4_2:73097576-73097595 | Msa0621160:intron | 15.0% |
| !! | AAAAAAAAATCATGAAACTT+GGG | - | chr4_2:73097577-73097596 | Msa0621160:intron | 15.0% |
| !! | AAAGAAAAAAATGAATTTCA+AGG | - | chr4_2:73097942-73097961 | Msa0621160:CDS | 15.0% |
| !! | ATTTGAATGAAATATTTACA+TGG | - | chr4_2:73099095-73099114 | Msa0621160:intron | 15.0% |
| !!! | AATTAATTGATAGCATTGTT+GGG | + | chr4_2:73095515-73095534 | None:intergenic | 20.0% |
| !! | AACTATGAAGAAGAAAATTA+AGG | + | chr4_2:73095919-73095938 | None:intergenic | 20.0% |
| !! | ATGATAATCATCATAAAATC+AGG | - | chr4_2:73095966-73095985 | Msa0621160:CDS | 20.0% |
| !!! | TCCAATAGTCATTTATTTTT+AGG | - | chr4_2:73096036-73096055 | Msa0621160:CDS | 20.0% |
| !! | TCCTAAAAATAAATGACTAT+TGG | + | chr4_2:73096040-73096059 | None:intergenic | 20.0% |
| !! | TACAATTACAATGTAATTAC+TGG | - | chr4_2:73096244-73096263 | Msa0621160:CDS | 20.0% |
| !!! | AGTTTTGTAAAAAATGTATC+TGG | - | chr4_2:73096441-73096460 | Msa0621160:CDS | 20.0% |
| !! | TAAAAAATGTATCTGGTAAA+AGG | - | chr4_2:73096448-73096467 | Msa0621160:CDS | 20.0% |
| !! | AAATAAACACATATAATCAG+TGG | - | chr4_2:73096891-73096910 | Msa0621160:intron | 20.0% |
| !! | AAAAAAATTCACCAAACAAT+TGG | + | chr4_2:73097227-73097246 | None:intergenic | 20.0% |
| !! | TAATCTCGATATTAATTCAT+AGG | + | chr4_2:73097693-73097712 | None:intergenic | 20.0% |
| !! | ATTTAATGAGAAAAACATGA+TGG | + | chr4_2:73098537-73098556 | None:intergenic | 20.0% |
| !!! | TTTGTTGTGAAACTTATAAT+AGG | + | chr4_2:73099660-73099679 | None:intergenic | 20.0% |
| !! | CATAAGAAAAAATGGATAAA+GGG | - | chr4_2:73099710-73099729 | Msa0621160:intron | 20.0% |
| !! | AAGAATAAAAAATGTGTACA+CGG | + | chr4_2:73099749-73099768 | None:intergenic | 20.0% |
| !!! | TCTGATAATTCAATTTTTGA+GGG | - | chr4_2:73099798-73099817 | Msa0621160:CDS | 20.0% |
| !!! | ATACAATATCGATTCATTTA+GGG | + | chr4_2:73099828-73099847 | None:intergenic | 20.0% |
| !! | ATTAATTGATAGCATTGTTG+GGG | + | chr4_2:73095514-73095533 | None:intergenic | 25.0% |
| !! | GAATTAATTGATAGCATTGT+TGG | + | chr4_2:73095516-73095535 | None:intergenic | 25.0% |
| ! | ACACAACACAATATGTATAA+TGG | + | chr4_2:73095639-73095658 | None:intergenic | 25.0% |
| !! | ATACTTGAAGATGATTTTCT+AGG | - | chr4_2:73095687-73095706 | Msa0621160:three_prime_UTR | 25.0% |
| !! | TACTTGAAGATGATTTTCTA+GGG | - | chr4_2:73095688-73095707 | Msa0621160:three_prime_UTR | 25.0% |
| ! | AGGAAAGAAACAAAATGAAA+TGG | + | chr4_2:73095750-73095769 | None:intergenic | 25.0% |
| !! | AGTTTAATAAATGCATCGAT+AGG | + | chr4_2:73095770-73095789 | None:intergenic | 25.0% |
| ! | ATCGATGCATTTATTAAACT+TGG | - | chr4_2:73095770-73095789 | Msa0621160:CDS | 25.0% |
| ! | TTAGGACTAAAATTATCACA+AGG | - | chr4_2:73096054-73096073 | Msa0621160:CDS | 25.0% |
| ! | AAGTCAAGTTTCATAAATGA+TGG | - | chr4_2:73096100-73096119 | Msa0621160:CDS | 25.0% |
| ! | TGTATACTTCAAATCCTATT+AGG | + | chr4_2:73096662-73096681 | None:intergenic | 25.0% |
| !! | TATTTCTTGTTTACATTCGA+AGG | - | chr4_2:73096805-73096824 | Msa0621160:intron | 25.0% |
| ! | TTATGTCCTTACATAAATGT+TGG | + | chr4_2:73097144-73097163 | None:intergenic | 25.0% |
| ! | AATGTGTTTCATTAATAACG+AGG | - | chr4_2:73097270-73097289 | Msa0621160:CDS | 25.0% |
| ! | TGAAGATTTATACAAGAGAA+AGG | - | chr4_2:73097298-73097317 | Msa0621160:CDS | 25.0% |
| ! | ATCATGAAACTTATGAAACT+GGG | - | chr4_2:73097539-73097558 | Msa0621160:CDS | 25.0% |
| !!! | TTTTTTCGATTTCTAAATCC+AGG | + | chr4_2:73097621-73097640 | None:intergenic | 25.0% |
| ! | AATCCTGATTCAATTCAAAT+AGG | - | chr4_2:73097646-73097665 | Msa0621160:intron | 25.0% |
| ! | ATCCTGATTCAATTCAAATA+GGG | - | chr4_2:73097647-73097666 | Msa0621160:intron | 25.0% |
| ! | TATCAAATGTAGATACTGAT+TGG | - | chr4_2:73097889-73097908 | Msa0621160:CDS | 25.0% |
| !! | ATCAAATGTAGATACTGATT+GGG | - | chr4_2:73097890-73097909 | Msa0621160:CDS | 25.0% |
| ! | AAAAATGAATTTCAAGGCAT+TGG | - | chr4_2:73097948-73097967 | Msa0621160:CDS | 25.0% |
| ! | AAAAAGATGCTTACAATGAA+TGG | - | chr4_2:73098828-73098847 | Msa0621160:intron | 25.0% |
| !! | AGGAACATAGATTTTCTATT+TGG | - | chr4_2:73098929-73098948 | Msa0621160:intron | 25.0% |
| !! | GGAACATAGATTTTCTATTT+GGG | - | chr4_2:73098930-73098949 | Msa0621160:intron | 25.0% |
| ! | ATATTTCATTCAAATACCCT+TGG | + | chr4_2:73099090-73099109 | None:intergenic | 25.0% |
| ! | TGAATGAAATATTTACATGG+TGG | - | chr4_2:73099098-73099117 | Msa0621160:intron | 25.0% |
| !! | AAATTTTATCCCATTAGAGA+TGG | - | chr4_2:73099681-73099700 | Msa0621160:intron | 25.0% |
| !! | AATTTTATCCCATTAGAGAT+GGG | - | chr4_2:73099682-73099701 | Msa0621160:intron | 25.0% |
| ! | GCATAAGAAAAAATGGATAA+AGG | - | chr4_2:73099709-73099728 | Msa0621160:intron | 25.0% |
| !! | CTCTGATAATTCAATTTTTG+AGG | - | chr4_2:73099797-73099816 | Msa0621160:CDS | 25.0% |
| !!! | CATACAATATCGATTCATTT+AGG | + | chr4_2:73099829-73099848 | None:intergenic | 25.0% |
| AAATTGTGAAGGAAGTTACT+TGG | - | chr4_2:73095460-73095479 | Msa0621160:three_prime_UTR | 30.0% | |
| ! | ACTTGAAGATGATTTTCTAG+GGG | - | chr4_2:73095689-73095708 | Msa0621160:three_prime_UTR | 30.0% |
| AGAAAATTAAGGAACTGACA+TGG | + | chr4_2:73095908-73095927 | None:intergenic | 30.0% | |
| ! | GCATTTAGACTCTTTAGAAA+AGG | + | chr4_2:73096158-73096177 | None:intergenic | 30.0% |
| TAAGAACGTTTAATACGTTG+AGG | + | chr4_2:73096226-73096245 | None:intergenic | 30.0% | |
| GTATGTGTTAGATAGCTATA+AGG | + | chr4_2:73096582-73096601 | None:intergenic | 30.0% | |
| ! | AATCATTTTCAAACCACATG+AGG | - | chr4_2:73096698-73096717 | Msa0621160:CDS | 30.0% |
| ! | ATCATTTTCAAACCACATGA+GGG | - | chr4_2:73096699-73096718 | Msa0621160:CDS | 30.0% |
| ATATGATACGGATCACAATT+GGG | + | chr4_2:73096739-73096758 | None:intergenic | 30.0% | |
| TATATGATACGGATCACAAT+TGG | + | chr4_2:73096740-73096759 | None:intergenic | 30.0% | |
| TCATTTAGAAAAGACAGGAA+GGG | + | chr4_2:73096763-73096782 | None:intergenic | 30.0% | |
| ! | ACGTATATTTTGCATGATGT+TGG | - | chr4_2:73097091-73097110 | Msa0621160:CDS | 30.0% |
| CAAACTCCAACATTTATGTA+AGG | - | chr4_2:73097135-73097154 | Msa0621160:intron | 30.0% | |
| TATCTGCAAATCCAATTGTT+TGG | - | chr4_2:73097213-73097232 | Msa0621160:CDS | 30.0% | |
| ! | TCTTGGATAGATAAGTTGAA+AGG | + | chr4_2:73097356-73097375 | None:intergenic | 30.0% |
| TGCATCTTAAGTTTCTATCT+TGG | + | chr4_2:73097373-73097392 | None:intergenic | 30.0% | |
| CATCATGAAACTTATGAAAC+TGG | - | chr4_2:73097538-73097557 | Msa0621160:CDS | 30.0% | |
| TCATGAAACTTATGAAACTG+GGG | - | chr4_2:73097540-73097559 | Msa0621160:CDS | 30.0% | |
| TCCTGATTCAATTCAAATAG+GGG | - | chr4_2:73097648-73097667 | Msa0621160:intron | 30.0% | |
| GAGAACAAGTACTAAAATAG+TGG | + | chr4_2:73097786-73097805 | None:intergenic | 30.0% | |
| ! | TCAAATGTAGATACTGATTG+GGG | - | chr4_2:73097891-73097910 | Msa0621160:CDS | 30.0% |
| ! | TAATGAAGAGCACATAAATG+GGG | + | chr4_2:73098292-73098311 | None:intergenic | 30.0% |
| ! | GTAATGAAGAGCACATAAAT+GGG | + | chr4_2:73098293-73098312 | None:intergenic | 30.0% |
| ! | ATTTGGTATTGGAAAACAGT+TGG | + | chr4_2:73098315-73098334 | None:intergenic | 30.0% |
| ! | TTTTCTTGTCGCAAAATTGA+TGG | - | chr4_2:73098557-73098576 | Msa0621160:intron | 30.0% |
| TCTCATCAACAAGTATTACT+AGG | + | chr4_2:73098724-73098743 | None:intergenic | 30.0% | |
| !!! | TAAGCATCTTTTTCAGCTTT+GGG | + | chr4_2:73098821-73098840 | None:intergenic | 30.0% |
| AATGGAATTACAGCAAATTC+AGG | - | chr4_2:73098846-73098865 | Msa0621160:intron | 30.0% | |
| TCTCATTTATATGATCCATC+AGG | + | chr4_2:73099045-73099064 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCATATGTCT+TGG | + | chr4_2:73099133-73099152 | None:intergenic | 30.0% | |
| !! | TGAACTTCTTGAAGCATTTT+TGG | - | chr4_2:73099140-73099159 | Msa0621160:intron | 30.0% |
| !! | GAACTTCTTGAAGCATTTTT+GGG | - | chr4_2:73099141-73099160 | Msa0621160:intron | 30.0% |
| CAAATGAAAACCATGTTGTT+TGG | - | chr4_2:73099187-73099206 | Msa0621160:intron | 30.0% | |
| CAAAACTGTTGTAAAAGCTT+GGG | + | chr4_2:73099367-73099386 | None:intergenic | 30.0% | |
| AAATAGCAAACTACACAGAT+GGG | - | chr4_2:73099440-73099459 | Msa0621160:intron | 30.0% | |
| GTATAGATAATCTTTGTGAC+TGG | - | chr4_2:73099503-73099522 | Msa0621160:CDS | 30.0% | |
| AGAAAAAATGGATAAAGGGA+AGG | - | chr4_2:73099714-73099733 | Msa0621160:intron | 30.0% | |
| AATGTGCAACAATCATAAAC+TGG | - | chr4_2:73099895-73099914 | Msa0621160:CDS | 30.0% | |
| AAGAAAGAGGAATGTGAAGA+AGG | + | chr4_2:73095547-73095566 | None:intergenic | 35.0% | |
| CACAGATAGAAACAAGAAAG+AGG | + | chr4_2:73095560-73095579 | None:intergenic | 35.0% | |
| ! | GGAAAACAATATACCGATTG+AGG | + | chr4_2:73095618-73095637 | None:intergenic | 35.0% |
| CTGAATATGAGAGGAACAAT+GGG | - | chr4_2:73095838-73095857 | Msa0621160:CDS | 35.0% | |
| ! | TCATTTTCAAACCACATGAG+GGG | - | chr4_2:73096700-73096719 | Msa0621160:CDS | 35.0% |
| GTCATTTAGAAAAGACAGGA+AGG | + | chr4_2:73096764-73096783 | None:intergenic | 35.0% | |
| ! | CGTTGTCATTTAGAAAAGAC+AGG | + | chr4_2:73096768-73096787 | None:intergenic | 35.0% |
| AGTAGATGAGCAGCATTATT+AGG | - | chr4_2:73096960-73096979 | Msa0621160:CDS | 35.0% | |
| GTAGATGAGCAGCATTATTA+GGG | - | chr4_2:73096961-73096980 | Msa0621160:CDS | 35.0% | |
| AAGACAAGTGACATGCATTT+AGG | - | chr4_2:73097176-73097195 | Msa0621160:CDS | 35.0% | |
| GTAGAGGAACATTACAAAAG+TGG | + | chr4_2:73097438-73097457 | None:intergenic | 35.0% | |
| TACAATACCACCCATTTAAC+AGG | - | chr4_2:73097470-73097489 | Msa0621160:CDS | 35.0% | |
| CATGAAACTTATGAAACTGG+GGG | - | chr4_2:73097541-73097560 | Msa0621160:CDS | 35.0% | |
| AATCATGAAACTTGGGAAAC+TGG | - | chr4_2:73097584-73097603 | Msa0621160:intron | 35.0% | |
| ATCATGAAACTTGGGAAACT+GGG | - | chr4_2:73097585-73097604 | Msa0621160:intron | 35.0% | |
| CCTGATTCAATTCAAATAGG+GGG | - | chr4_2:73097649-73097668 | Msa0621160:intron | 35.0% | |
| ACTTGTTCTCTTCTTAGCAT+AGG | - | chr4_2:73097796-73097815 | Msa0621160:intron | 35.0% | |
| CTTGTTCTCTTCTTAGCATA+GGG | - | chr4_2:73097797-73097816 | Msa0621160:intron | 35.0% | |
| TTGTTCTCTTCTTAGCATAG+GGG | - | chr4_2:73097798-73097817 | Msa0621160:intron | 35.0% | |
| ! | ATCTGTGCAATTTTGTGAAC+AGG | - | chr4_2:73097835-73097854 | Msa0621160:intron | 35.0% |
| ! | ATTTTGTGAACAGGTGGATA+TGG | - | chr4_2:73097844-73097863 | Msa0621160:intron | 35.0% |
| ! | TTTTGTGAACAGGTGGATAT+GGG | - | chr4_2:73097845-73097864 | Msa0621160:intron | 35.0% |
| TCTACATTTGATATGTACCG+AGG | + | chr4_2:73097882-73097901 | None:intergenic | 35.0% | |
| ACAACACTGAGATATCTAAC+TGG | - | chr4_2:73097985-73098004 | Msa0621160:CDS | 35.0% | |
| !! | ATATCCAGAATGGATTGATG+AGG | - | chr4_2:73098085-73098104 | Msa0621160:intron | 35.0% |
| GTTAAGCTACCTTGTAAGAA+TGG | - | chr4_2:73098185-73098204 | Msa0621160:intron | 35.0% | |
| ! | GGTAATGAAGAGCACATAAA+TGG | + | chr4_2:73098294-73098313 | None:intergenic | 35.0% |
| ! | CAGGTAAACAGATTTGGTAT+TGG | + | chr4_2:73098326-73098345 | None:intergenic | 35.0% |
| TCTTTGCAGGTAAACAGATT+TGG | + | chr4_2:73098332-73098351 | None:intergenic | 35.0% | |
| TTTACCTGCAAAGAACTAGT+TGG | - | chr4_2:73098338-73098357 | Msa0621160:intron | 35.0% | |
| TCTCTCAAAACACTCAAGTT+TGG | + | chr4_2:73098392-73098411 | None:intergenic | 35.0% | |
| AATGAATTCAAACGCAGAAC+TGG | - | chr4_2:73098580-73098599 | Msa0621160:intron | 35.0% | |
| TGAATGCAGAATTGTTGCAT+AGG | + | chr4_2:73098633-73098652 | None:intergenic | 35.0% | |
| TCAGCTCATGTTTATGTTTG+TGG | - | chr4_2:73098650-73098669 | Msa0621160:intron | 35.0% | |
| !!! | AAGCATCTTTTTCAGCTTTG+GGG | + | chr4_2:73098820-73098839 | None:intergenic | 35.0% |
| !!! | GTAAGCATCTTTTTCAGCTT+TGG | + | chr4_2:73098822-73098841 | None:intergenic | 35.0% |
| !! | ATTACAGCAAATTCAGGTTG+TGG | - | chr4_2:73098852-73098871 | Msa0621160:intron | 35.0% |
| ATGCAGATTTACTCATACTC+AGG | - | chr4_2:73098909-73098928 | Msa0621160:intron | 35.0% | |
| !! | AGATTTTCTATTTGGGATGC+CGG | - | chr4_2:73098937-73098956 | Msa0621160:intron | 35.0% |
| !! | TCTTTTTAACTCTGGTGTCA+TGG | - | chr4_2:73098988-73099007 | Msa0621160:intron | 35.0% |
| AATGAGATTGAGTCCTACAA+TGG | - | chr4_2:73099058-73099077 | Msa0621160:intron | 35.0% | |
| AAATATTTACATGGTGGCAC+AGG | - | chr4_2:73099104-73099123 | Msa0621160:intron | 35.0% | |
| !!! | TTCTTGAAGCATTTTTGGGT+TGG | - | chr4_2:73099145-73099164 | Msa0621160:intron | 35.0% |
| TAGTGAAGCACATAGAGAAT+TGG | + | chr4_2:73099223-73099242 | None:intergenic | 35.0% | |
| CTCTATGTGCTTCACTATTT+AGG | - | chr4_2:73099226-73099245 | Msa0621160:intron | 35.0% | |
| ! | ACTATTTAGGTTTGAAGCCA+TGG | - | chr4_2:73099239-73099258 | Msa0621160:intron | 35.0% |
| GCAAAACTGTTGTAAAAGCT+TGG | + | chr4_2:73099368-73099387 | None:intergenic | 35.0% | |
| GAAATAGCAAACTACACAGA+TGG | - | chr4_2:73099439-73099458 | Msa0621160:intron | 35.0% | |
| TAAAGCAGAAAGAGATGACA+TGG | + | chr4_2:73099605-73099624 | None:intergenic | 35.0% | |
| ATCGATATTGTATGACTCTC+TGG | - | chr4_2:73099835-73099854 | Msa0621160:CDS | 35.0% | |
| GAATGTGAAGAAGGTGATGT+AGG | + | chr4_2:73095538-73095557 | None:intergenic | 40.0% | |
| ! | GCAAATTTTGTTGCGCATGT+TGG | - | chr4_2:73095579-73095598 | Msa0621160:three_prime_UTR | 40.0% |
| ! | TGCAGAGATTTTGCATTGCA+TGG | - | chr4_2:73095807-73095826 | Msa0621160:CDS | 40.0% |
| GCTGAATATGAGAGGAACAA+TGG | - | chr4_2:73095837-73095856 | Msa0621160:CDS | 40.0% | |
| TAAGGAACTGACATGGATGA+AGG | + | chr4_2:73095901-73095920 | None:intergenic | 40.0% | |
| AAATGCGAAACTCACACACA+CGG | - | chr4_2:73096172-73096191 | Msa0621160:CDS | 40.0% | |
| AATACACGCATGCACCTAAT+AGG | - | chr4_2:73096645-73096664 | Msa0621160:CDS | 40.0% | |
| ! | GACAGGAAGGGTATATGATA+CGG | + | chr4_2:73096751-73096770 | None:intergenic | 40.0% |
| AGGAAGCTTAGCAAGATACT+AGG | - | chr4_2:73096825-73096844 | Msa0621160:intron | 40.0% | |
| CTCATCTACTTGACTAACTG+TGG | + | chr4_2:73096950-73096969 | None:intergenic | 40.0% | |
| TTTGCATGATGTTGGAGTTC+AGG | - | chr4_2:73097099-73097118 | Msa0621160:CDS | 40.0% | |
| TGGCGGAAATGGTTATCAAT+AGG | + | chr4_2:73097418-73097437 | None:intergenic | 40.0% | |
| ! | CATTACAAAAGTGGCGGAAA+TGG | + | chr4_2:73097429-73097448 | None:intergenic | 40.0% |
| GAGGAACATTACAAAAGTGG+CGG | + | chr4_2:73097435-73097454 | None:intergenic | 40.0% | |
| ! | TGTAAATCTCTGGAGAGTAG+AGG | + | chr4_2:73097454-73097473 | None:intergenic | 40.0% |
| TGGGTGGTATTGTAAATCTC+TGG | + | chr4_2:73097464-73097483 | None:intergenic | 40.0% | |
| TGCACTAGAGCCTGTTAAAT+GGG | + | chr4_2:73097483-73097502 | None:intergenic | 40.0% | |
| TTGCACTAGAGCCTGTTAAA+TGG | + | chr4_2:73097484-73097503 | None:intergenic | 40.0% | |
| ! | ATTTAACAGGCTCTAGTGCA+AGG | - | chr4_2:73097483-73097502 | Msa0621160:CDS | 40.0% |
| TCTAGTGCAAGGTATGTTTC+TGG | - | chr4_2:73097494-73097513 | Msa0621160:CDS | 40.0% | |
| TCATGAAACTTGGGAAACTG+GGG | - | chr4_2:73097586-73097605 | Msa0621160:intron | 40.0% | |
| CCCCCTATTTGAATTGAATC+AGG | + | chr4_2:73097652-73097671 | None:intergenic | 40.0% | |
| ! | TGTGCAATTTTGTGAACAGG+TGG | - | chr4_2:73097838-73097857 | Msa0621160:intron | 40.0% |
| TTTGTGAACAGGTGGATATG+GGG | - | chr4_2:73097846-73097865 | Msa0621160:intron | 40.0% | |
| TAGATGTAGAGCAACATGTG+TGG | + | chr4_2:73098030-73098049 | None:intergenic | 40.0% | |
| TCTTCCTCATCAATCCATTC+TGG | + | chr4_2:73098092-73098111 | None:intergenic | 40.0% | |
| ! | ATGAGATTGAGTCTTGTACC+AGG | + | chr4_2:73098161-73098180 | None:intergenic | 40.0% |
| CAGTTAGCTCCATTCTTACA+AGG | + | chr4_2:73098197-73098216 | None:intergenic | 40.0% | |
| CTTGTAAGAATGGAGCTAAC+TGG | - | chr4_2:73098195-73098214 | Msa0621160:intron | 40.0% | |
| TTCCTTTGAATGAGGTAGCA+AGG | + | chr4_2:73098265-73098284 | None:intergenic | 40.0% | |
| GGGGTAATTTCCTTTGAATG+AGG | + | chr4_2:73098273-73098292 | None:intergenic | 40.0% | |
| AAAGAACTAGTTGGACGTGA+AGG | - | chr4_2:73098347-73098366 | Msa0621160:intron | 40.0% | |
| TTGGACGTGAAGGAAATGTA+TGG | - | chr4_2:73098357-73098376 | Msa0621160:intron | 40.0% | |
| GAAAAAGTTCAGCTTCCAGT+TGG | - | chr4_2:73098410-73098429 | Msa0621160:intron | 40.0% | |
| AAGTTTGGGAATGTGAGAGA+TGG | + | chr4_2:73098489-73098508 | None:intergenic | 40.0% | |
| ATGCAAACGAGTGCAAGTTT+GGG | + | chr4_2:73098503-73098522 | None:intergenic | 40.0% | |
| ! | AACGCAGAACTGGTTTACAA+TGG | - | chr4_2:73098590-73098609 | Msa0621160:intron | 40.0% |
| ATTGTTGCATAGGCTTCTCT+TGG | + | chr4_2:73098623-73098642 | None:intergenic | 40.0% | |
| GCACAAAGCATAAGAATGTC+AGG | - | chr4_2:73098686-73098705 | Msa0621160:intron | 40.0% | |
| ! | CTTGTTGATGAGACAATCAG+TGG | - | chr4_2:73098731-73098750 | Msa0621160:intron | 40.0% |
| ATCAGTGGATATCACAGAAG+CGG | - | chr4_2:73098746-73098765 | Msa0621160:intron | 40.0% | |
| AAAAAGAGTGGCATCGTTAC+CGG | + | chr4_2:73098975-73098994 | None:intergenic | 40.0% | |
| !! | GATGCCACTCTTTTTAACTC+TGG | - | chr4_2:73098980-73098999 | Msa0621160:intron | 40.0% |
| GACACCAGAGTTAAAAAGAG+TGG | + | chr4_2:73098987-73099006 | None:intergenic | 40.0% | |
| !!! | TTTTAACTCTGGTGTCATGG+TGG | - | chr4_2:73098991-73099010 | Msa0621160:intron | 40.0% |
| AGCTGAAATGTGCAGTTTGA+TGG | + | chr4_2:73099022-73099041 | None:intergenic | 40.0% | |
| AGATTGAGTCCTACAATGGA+GGG | - | chr4_2:73099062-73099081 | Msa0621160:intron | 40.0% | |
| TGAAGCACATAGAGAATTGG+TGG | + | chr4_2:73099220-73099239 | None:intergenic | 40.0% | |
| TCAGGGACTATGATTGTAAC+TGG | - | chr4_2:73099269-73099288 | Msa0621160:intron | 40.0% | |
| !! | TGTAGTTTGCTATTTCCGCT+TGG | + | chr4_2:73099435-73099454 | None:intergenic | 40.0% |
| AGAGATGACATGGTAACTGT+GGG | + | chr4_2:73099595-73099614 | None:intergenic | 40.0% | |
| AAGAGATGACATGGTAACTG+TGG | + | chr4_2:73099596-73099615 | None:intergenic | 40.0% | |
| TATCCCATTAGAGATGGGAT+CGG | - | chr4_2:73099687-73099706 | Msa0621160:intron | 40.0% | |
| GGGATCGGCATAAGAAAAAA+TGG | - | chr4_2:73099702-73099721 | Msa0621160:intron | 40.0% | |
| TTGTATGACTCTCTGGTGTT+TGG | - | chr4_2:73099842-73099861 | Msa0621160:CDS | 40.0% | |
| TGTATGACTCTCTGGTGTTT+GGG | - | chr4_2:73099843-73099862 | Msa0621160:CDS | 40.0% | |
| ! | TATACCGATTGAGGTGTACG+TGG | + | chr4_2:73095609-73095628 | None:intergenic | 45.0% |
| GCTCTGTAGCTGAATATGAG+AGG | - | chr4_2:73095829-73095848 | Msa0621160:CDS | 45.0% | |
| ! | AGTCTAGCTTCAACAGAACG+AGG | + | chr4_2:73095871-73095890 | None:intergenic | 45.0% |
| TCACAATTGGGACTGTATGC+AGG | + | chr4_2:73096727-73096746 | None:intergenic | 45.0% | |
| ACTAGAGCCTGTTAAATGGG+TGG | + | chr4_2:73097480-73097499 | None:intergenic | 45.0% | |
| CATGAAACTTGGGAAACTGG+GGG | - | chr4_2:73097587-73097606 | Msa0621160:intron | 45.0% | |
| ATGCTGCAAACAGTGTGACA+TGG | - | chr4_2:73098054-73098073 | Msa0621160:CDS | 45.0% | |
| TGCTGCAAACAGTGTGACAT+GGG | - | chr4_2:73098055-73098074 | Msa0621160:CDS | 45.0% | |
| GGGAGTCTCTATATCCAGAA+TGG | - | chr4_2:73098075-73098094 | Msa0621160:intron | 45.0% | |
| ! | ATCCGAGACTTGGTAGAGAA+GGG | + | chr4_2:73098136-73098155 | None:intergenic | 45.0% |
| ! | ACGTCCAACTAGTTCTTTGC+AGG | + | chr4_2:73098345-73098364 | None:intergenic | 45.0% |
| GCAAGTTCACATGATCCAAC+TGG | + | chr4_2:73098428-73098447 | None:intergenic | 45.0% | |
| GAACTTGCACTTCCTATGAG+AGG | - | chr4_2:73098440-73098459 | Msa0621160:intron | 45.0% | |
| AACATACCTCTGCCTCTCAT+AGG | + | chr4_2:73098455-73098474 | None:intergenic | 45.0% | |
| CATGCAAACGAGTGCAAGTT+TGG | + | chr4_2:73098504-73098523 | None:intergenic | 45.0% | |
| TATGCTTTGTGCTGCAGCTA+TGG | + | chr4_2:73098678-73098697 | None:intergenic | 45.0% | |
| TGGATATCACAGAAGCGGTT+TGG | - | chr4_2:73098751-73098770 | Msa0621160:intron | 45.0% | |
| TTACCGGTAGCAGTGATTTC+CGG | + | chr4_2:73098959-73098978 | None:intergenic | 45.0% | |
| GAGATTGAGTCCTACAATGG+AGG | - | chr4_2:73099061-73099080 | Msa0621160:intron | 45.0% | |
| GATTGAGTCCTACAATGGAG+GGG | - | chr4_2:73099063-73099082 | Msa0621160:intron | 45.0% | |
| !!! | GCATTTTTGGGTTGGTGATG+AGG | - | chr4_2:73099153-73099172 | Msa0621160:intron | 45.0% |
| TGAAGCCATGGTTATGCTTC+AGG | - | chr4_2:73099251-73099270 | Msa0621160:intron | 45.0% | |
| GAAGCCATGGTTATGCTTCA+GGG | - | chr4_2:73099252-73099271 | Msa0621160:intron | 45.0% | |
| TAGTCCCTGAAGCATAACCA+TGG | + | chr4_2:73099259-73099278 | None:intergenic | 45.0% | |
| GTGATGTAGCACATGCAAAG+TGG | - | chr4_2:73099320-73099339 | Msa0621160:intron | 45.0% | |
| ATGTAGCACATGCAAAGTGG+TGG | - | chr4_2:73099323-73099342 | Msa0621160:intron | 45.0% | |
| ! | CCTTCTGCTTTGACTTCAAC+AGG | + | chr4_2:73099390-73099409 | None:intergenic | 45.0% |
| CCTGTTGAAGTCAAAGCAGA+AGG | - | chr4_2:73099387-73099406 | Msa0621160:intron | 45.0% | |
| ! | GCACTGGCGAATCAAAGTTA+AGG | - | chr4_2:73099462-73099481 | Msa0621160:intron | 45.0% |
| ! | GTGACTGGAAAAGCATGTTG+CGG | - | chr4_2:73099518-73099537 | Msa0621160:CDS | 45.0% |
| ! | GAAAAGCATGTTGCGGCATT+GGG | - | chr4_2:73099525-73099544 | Msa0621160:CDS | 45.0% |
| ! | AAAAGCATGTTGCGGCATTG+GGG | - | chr4_2:73099526-73099545 | Msa0621160:CDS | 45.0% |
| ATGCCGATCCCATCTCTAAT+GGG | + | chr4_2:73099693-73099712 | None:intergenic | 45.0% | |
| TATGCCGATCCCATCTCTAA+TGG | + | chr4_2:73099694-73099713 | None:intergenic | 45.0% | |
| !!! | TTTATTTAAGTTTTTATATA+TGG | + | chr4_2:73096386-73096405 | None:intergenic | 5.0% |
| !!! | ATTAAAATTTTCATATATAA+CGG | - | chr4_2:73097709-73097728 | Msa0621160:intron | 5.0% |
| AGCACCACGTACACCTCAAT+CGG | - | chr4_2:73095602-73095621 | Msa0621160:three_prime_UTR | 50.0% | |
| !! | GGATGCAGACTTGATAACGC+TGG | + | chr4_2:73096929-73096948 | None:intergenic | 50.0% |
| AAACTGGGGGACTGAAATCC+TGG | - | chr4_2:73097600-73097619 | Msa0621160:intron | 50.0% | |
| CTTGGTAGAGAAGGGCAAAC+AGG | + | chr4_2:73098128-73098147 | None:intergenic | 50.0% | |
| TGCCCTTCTCTACCAAGTCT+CGG | - | chr4_2:73098131-73098150 | Msa0621160:intron | 50.0% | |
| ! | GATCCGAGACTTGGTAGAGA+AGG | + | chr4_2:73098137-73098156 | None:intergenic | 50.0% |
| GGCCTTGCTACCTCATTCAA+AGG | - | chr4_2:73098260-73098279 | Msa0621160:intron | 50.0% | |
| ATGCCGGAAATCACTGCTAC+CGG | - | chr4_2:73098953-73098972 | Msa0621160:intron | 50.0% | |
| CTGCACATTTCAGCTCCTGA+TGG | - | chr4_2:73099027-73099046 | Msa0621160:intron | 50.0% | |
| TGGCTCAGCACCAAACAACA+TGG | + | chr4_2:73099200-73099219 | None:intergenic | 50.0% | |
| ! | AGCACATGCAAAGTGGTGGA+AGG | - | chr4_2:73099327-73099346 | Msa0621160:intron | 50.0% |
| ! | GTCAAAGCAGAAGGCACAGT+TGG | - | chr4_2:73099396-73099415 | Msa0621160:intron | 50.0% |
| CAAACTACACAGATGGGCAC+TGG | - | chr4_2:73099446-73099465 | Msa0621160:intron | 50.0% | |
| ! | GGAAAAGCATGTTGCGGCAT+TGG | - | chr4_2:73099524-73099543 | Msa0621160:CDS | 50.0% |
| ! | ATGGTAACTGTGGGAGGTGT+TGG | + | chr4_2:73099586-73099605 | None:intergenic | 50.0% |
| GATGACATGGTAACTGTGGG+AGG | + | chr4_2:73099592-73099611 | None:intergenic | 50.0% | |
| TGTATGCAGGTCCCCTCATG+TGG | + | chr4_2:73096714-73096733 | None:intergenic | 55.0% | |
| GTGAACAGGTGGATATGGGG+TGG | - | chr4_2:73097849-73097868 | Msa0621160:intron | 55.0% | |
| TATGGGGTGGCTCAGATCCT+CGG | - | chr4_2:73097862-73097881 | Msa0621160:intron | 55.0% | |
| CTACCAAGTCTCGGATCTCC+TGG | - | chr4_2:73098140-73098159 | Msa0621160:intron | 55.0% | |
| GTACCAGGAGATCCGAGACT+TGG | + | chr4_2:73098146-73098165 | None:intergenic | 55.0% | |
| GCACTTCCTATGAGAGGCAG+AGG | - | chr4_2:73098446-73098465 | Msa0621160:intron | 55.0% | |
| ! | AGAAGCGGTTTGGAAGCAGC+AGG | - | chr4_2:73098761-73098780 | Msa0621160:intron | 55.0% |
| ! | GAAGCGGTTTGGAAGCAGCA+GGG | - | chr4_2:73098762-73098781 | Msa0621160:intron | 55.0% |
| TTTGGAAGCAGCAGGGTGGA+AGG | - | chr4_2:73098769-73098788 | Msa0621160:intron | 55.0% | |
| TCCTACAATGGAGGGGACCA+AGG | - | chr4_2:73099070-73099089 | Msa0621160:intron | 55.0% | |
| CCTACAATGGAGGGGACCAA+GGG | - | chr4_2:73099071-73099090 | Msa0621160:intron | 55.0% | |
| ! | AGCAGAAGGCACAGTTGGAG+TGG | - | chr4_2:73099401-73099420 | Msa0621160:intron | 55.0% |
| ! | GCAGAAGGCACAGTTGGAGT+GGG | - | chr4_2:73099402-73099421 | Msa0621160:intron | 55.0% |
| ! | GGCATTGGGGAGAGAGTAAC+TGG | - | chr4_2:73099539-73099558 | Msa0621160:intron | 55.0% |
| CCCTTGGTCCCCTCCATTGT+AGG | + | chr4_2:73099074-73099093 | None:intergenic | 60.0% | |
| GGAGTGGGATCGAAGCCAAG+CGG | - | chr4_2:73099417-73099436 | Msa0621160:intron | 60.0% | |
| CACCTGCAGCTTGCAGCTGC+TGG | - | chr4_2:73098239-73098258 | Msa0621160:intron | 65.0% | |
| ! | GCGGTTTGGAAGCAGCAGGG+TGG | - | chr4_2:73098765-73098784 | Msa0621160:intron | 65.0% |
| GGCCAGCAGCTGCAAGCTGC+AGG | + | chr4_2:73098244-73098263 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 73095453 | 73099932 | 73095453 | ID=Msa0621160;Name=Msa0621160 |
| chr4_2 | mRNA | 73095453 | 73099932 | 73095453 | ID=Msa0621160-mRNA-1;Parent=Msa0621160;Name=Msa0621160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.33|0.28|1|0.5|0.42|7|305|697 |
| chr4_2 | exon | 73095453 | 73096788 | 73095453 | ID=Msa0621160-mRNA-1:exon:21921;Parent=Msa0621160-mRNA-1 |
| chr4_2 | exon | 73096918 | 73097130 | 73096918 | ID=Msa0621160-mRNA-1:exon:21920;Parent=Msa0621160-mRNA-1 |
| chr4_2 | exon | 73097152 | 73097318 | 73097152 | ID=Msa0621160-mRNA-1:exon:21919;Parent=Msa0621160-mRNA-1 |
| chr4_2 | exon | 73097334 | 73097567 | 73097334 | ID=Msa0621160-mRNA-1:exon:21918;Parent=Msa0621160-mRNA-1 |
| chr4_2 | exon | 73097881 | 73098087 | 73097881 | ID=Msa0621160-mRNA-1:exon:21917;Parent=Msa0621160-mRNA-1 |
| chr4_2 | exon | 73099477 | 73099547 | 73099477 | ID=Msa0621160-mRNA-1:exon:21916;Parent=Msa0621160-mRNA-1 |
| chr4_2 | exon | 73099762 | 73099932 | 73099762 | ID=Msa0621160-mRNA-1:exon:21915;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73099762 | 73099932 | 73099762 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73099477 | 73099547 | 73099477 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73097881 | 73098087 | 73097881 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73097334 | 73097567 | 73097334 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73097152 | 73097318 | 73097152 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73096918 | 73097130 | 73096918 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | CDS | 73095758 | 73096788 | 73095758 | ID=Msa0621160-mRNA-1:cds;Parent=Msa0621160-mRNA-1 |
| chr4_2 | three_prime_UTR | 73095453 | 73095757 | 73095453 | ID=Msa0621160-mRNA-1:three_prime_utr;Parent=Msa0621160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
