Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454340 | sp|G7LG31|RDN2_MEDTR | 98.611 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454340 | A0A072TQJ1 | 98.333 | 360 | 5 | 1 | 1 | 360 | 1 | 359 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138870 | Msa1454340 | 0.809363 | 1.963193e-50 | -8.615850e-47 |
| Msa1321490 | Msa1454340 | 0.830524 | 2.798342e-55 | -8.615850e-47 |
| Msa1328860 | Msa1454340 | 0.801057 | 1.077591e-48 | -8.615850e-47 |
| Msa0417850 | Msa1454340 | -0.800624 | 1.320619e-48 | -8.615850e-47 |
| Msa0329650 | Msa1454340 | 0.811176 | 7.981118e-51 | -8.615850e-47 |
| Msa1186670 | Msa1454340 | 0.870661 | 1.232500e-66 | -8.615850e-47 |
| Msa1218190 | Msa1454340 | 0.805087 | 1.581361e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454340 | MtrunA17_Chr8g0353191 | 98.611 | 360 | 5 | 0 | 1 | 360 | 1 | 360 | 0.0 | 740 |
| Msa1454340 | MtrunA17_Chr5g0441831 | 70.833 | 360 | 93 | 2 | 1 | 360 | 7 | 354 | 0.0 | 548 |
| Msa1454340 | MtrunA17_Chr1g0149621 | 62.772 | 368 | 120 | 5 | 1 | 359 | 1 | 360 | 3.07e-169 | 476 |
| Msa1454340 | MtrunA17_Chr7g0228921 | 24.908 | 273 | 159 | 13 | 66 | 317 | 395 | 642 | 1.02e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454340 | AT5G13500.2 | 76.111 | 360 | 84 | 1 | 1 | 360 | 1 | 358 | 0.0 | 576 |
| Msa1454340 | AT5G13500.3 | 76.111 | 360 | 84 | 1 | 1 | 360 | 1 | 358 | 0.0 | 576 |
| Msa1454340 | AT5G13500.1 | 76.111 | 360 | 84 | 1 | 1 | 360 | 1 | 358 | 0.0 | 576 |
| Msa1454340 | AT2G25260.1 | 70.530 | 302 | 89 | 0 | 58 | 359 | 57 | 358 | 2.85e-169 | 476 |
| Msa1454340 | AT5G25265.1 | 69.497 | 318 | 92 | 2 | 47 | 359 | 49 | 366 | 7.79e-169 | 475 |
| Msa1454340 | AT3G01720.1 | 23.051 | 295 | 187 | 10 | 41 | 317 | 370 | 642 | 1.16e-11 | 66.6 |
Find 116 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTCTTGAATGATATTT+TGG | 0.156597 | tig0035147:-1996 | Msa1454340:three_prime_UTR |
| CATCCATGTAGGAGCAATTT+TGG | 0.157802 | tig0035147:+4050 | None:intergenic |
| TTCCTTTGCTACATATAATT+TGG | 0.195551 | tig0035147:-6178 | Msa1454340:CDS |
| TGTAGACATACCACACTTTC+AGG | 0.233658 | tig0035147:+3252 | None:intergenic |
| ATTTAAATAGTTGTATTAAA+AGG | 0.253618 | tig0035147:+2045 | None:intergenic |
| TCTACCTTTCTGATAATTAC+AGG | 0.273833 | tig0035147:+4559 | None:intergenic |
| TTTGTGTTCTTCACATGTTC+AGG | 0.290321 | tig0035147:+6072 | None:intergenic |
| CCGGAGACCGACAAAGCTTT+TGG | 0.293985 | tig0035147:-4000 | Msa1454340:CDS |
| CTGATGATATGTTTGGTTCT+TGG | 0.302314 | tig0035147:-6204 | Msa1454340:CDS |
| GAATTGACTTACGGTAAAAT+TGG | 0.313648 | tig0035147:-3351 | Msa1454340:CDS |
| GCATTGCCATTTGTTGTAGA+TGG | 0.329461 | tig0035147:+6005 | None:intergenic |
| TACATTATTCATTATACTTA+CGG | 0.354634 | tig0035147:-3630 | Msa1454340:CDS |
| ACCATTACTGATGATATGTT+TGG | 0.354825 | tig0035147:-6211 | Msa1454340:CDS |
| TGTTCAGGCATCTCAACAAT+AGG | 0.356782 | tig0035147:+6087 | None:intergenic |
| GGAGGTAATGGCAAGTTTCT+TGG | 0.358268 | tig0035147:+3285 | None:intergenic |
| TATTTACAATGTATCCCAAT+TGG | 0.363051 | tig0035147:+2216 | None:intergenic |
| ATTTACAATGTATCCCAATT+GGG | 0.366685 | tig0035147:+2217 | None:intergenic |
| TTGATATCTTTCTGTCTGAT+AGG | 0.369093 | tig0035147:-6254 | Msa1454340:five_prime_UTR |
| TGTACGCCCTCTTCCCAATC+TGG | 0.371070 | tig0035147:-4710 | Msa1454340:CDS |
| ACATTATTCATTATACTTAC+GGG | 0.376342 | tig0035147:-3629 | Msa1454340:CDS |
| CCAAAAGCTTTGTCGGTCTC+CGG | 0.381162 | tig0035147:+4000 | None:intergenic |
| CCTCTTCCCAATCTGGCATT+TGG | 0.385015 | tig0035147:-4703 | Msa1454340:CDS |
| AATGTACTTGTTGAAAGTTT+CGG | 0.395815 | tig0035147:+3647 | None:intergenic |
| CTTTAAATACCATGATGAAT+AGG | 0.412610 | tig0035147:+2182 | None:intergenic |
| CTCACCCTGTCTAGACCTTC+CGG | 0.417765 | tig0035147:+5847 | None:intergenic |
| TGGAAAGGCTGACAACTTGA+TGG | 0.418539 | tig0035147:-5902 | Msa1454340:CDS |
| TAATACAACTATTTAAATGA+AGG | 0.423035 | tig0035147:-2040 | Msa1454340:three_prime_UTR |
| CACCCATCCAAAAGCTTTGT+CGG | 0.426464 | tig0035147:+3993 | None:intergenic |
| CTTCTGCTAACATCCCCAAT+TGG | 0.429086 | tig0035147:-2231 | Msa1454340:CDS |
| AAGGTGTATAGTGAGGTATT+TGG | 0.429135 | tig0035147:+2064 | None:intergenic |
| TCAGGTGACTCTTGTAAAGA+TGG | 0.438160 | tig0035147:-2263 | Msa1454340:intron |
| TGTCGTCGTTGATCCTCTTC+CGG | 0.440206 | tig0035147:-5866 | Msa1454340:CDS |
| CTTTGTTCAGTGGCTGGAAA+AGG | 0.444264 | tig0035147:-4862 | Msa1454340:CDS |
| GTGACAATGATAATCCACTA+TGG | 0.451326 | tig0035147:-6156 | Msa1454340:CDS |
| CTGATGCCATCTACAACAAA+TGG | 0.456001 | tig0035147:-6011 | Msa1454340:CDS |
| TTCTGCTAACATCCCCAATT+GGG | 0.459913 | tig0035147:-2230 | Msa1454340:CDS |
| ATGGGCCTTTGTTCAGTGGC+TGG | 0.460296 | tig0035147:-4868 | Msa1454340:CDS |
| GCGAAAAGACTTCATGCTAC+AGG | 0.466953 | tig0035147:-3811 | Msa1454340:intron |
| GGAACACCTGGAGGAGGTAA+TGG | 0.470362 | tig0035147:+3273 | None:intergenic |
| ATCGGATCAATATTTGTAAC+CGG | 0.473029 | tig0035147:+4592 | None:intergenic |
| CTCTTCCGGAAGGTCTAGAC+AGG | 0.482298 | tig0035147:-5852 | Msa1454340:CDS |
| TTGAAAGTTTCGGTATCCCA+TGG | 0.484134 | tig0035147:+3657 | None:intergenic |
| AATGGCAAGTTTCTTGGTGG+TGG | 0.485716 | tig0035147:+3291 | None:intergenic |
| TTGCCAAAATTGCTCCTACA+TGG | 0.492892 | tig0035147:-4053 | Msa1454340:CDS |
| CCAAATGCCAGATTGGGAAG+AGG | 0.493455 | tig0035147:+4703 | None:intergenic |
| GAATATGTCTCACGCCATGC+AGG | 0.497143 | tig0035147:+3835 | None:intergenic |
| CTGTCTAGACCTTCCGGAAG+AGG | 0.500411 | tig0035147:+5853 | None:intergenic |
| CAAAAGCTTTGTCGGTCTCC+GGG | 0.502506 | tig0035147:+4001 | None:intergenic |
| CTCTCTGTCTGTTGAAACAA+AGG | 0.505749 | tig0035147:-7542 | Msa1454340:intron |
| GTAACCGGTCCATTCTCCTC+AGG | 0.508925 | tig0035147:+4607 | None:intergenic |
| TGAAAGTTTCGGTATCCCAT+GGG | 0.514546 | tig0035147:+3658 | None:intergenic |
| AAGTATTATCCTGAGGAGAA+TGG | 0.515266 | tig0035147:-4616 | Msa1454340:CDS |
| GTTCAGGCATCTCAACAATA+GGG | 0.522658 | tig0035147:+6088 | None:intergenic |
| AATCCTCCCATCTCTGATCC+AGG | 0.523340 | tig0035147:+5943 | None:intergenic |
| TGGGGACGACGGAGGGAACA+CGG | 0.531083 | tig0035147:+7602 | None:intergenic |
| GAGTCTACCTGGATCAGAGA+TGG | 0.533196 | tig0035147:-5950 | Msa1454340:CDS |
| TTCTCCTGTAATTATCAGAA+AGG | 0.533563 | tig0035147:-4563 | Msa1454340:intron |
| AGAGGATCAACGACGACAGT+AGG | 0.536647 | tig0035147:+5871 | None:intergenic |
| AACTATCCGATGATCCATAG+TGG | 0.537106 | tig0035147:+6142 | None:intergenic |
| GTTCCCTCCGTCGTCCCCAT+CGG | 0.539278 | tig0035147:-7598 | Msa1454340:five_prime_UTR |
| AATGCCGTATCATGTATTAC+TGG | 0.539444 | tig0035147:-5987 | Msa1454340:CDS |
| AAGAAGCAAAGGAGTCTACC+TGG | 0.540779 | tig0035147:-5961 | Msa1454340:CDS |
| GACCATGGGCCTTTGTTCAG+TGG | 0.540787 | tig0035147:-4872 | Msa1454340:CDS |
| AACTTGCCATTACCTCCTCC+AGG | 0.543731 | tig0035147:-3279 | Msa1454340:CDS |
| CACCAAATTATATGTAGCAA+AGG | 0.545736 | tig0035147:+6176 | None:intergenic |
| GTTACAAATATTGATCCGAT+TGG | 0.548705 | tig0035147:-4589 | Msa1454340:CDS |
| TATACCAGTAATACATGATA+CGG | 0.549976 | tig0035147:+5983 | None:intergenic |
| ACCAAACATATCATCAGTAA+TGG | 0.550380 | tig0035147:+6210 | None:intergenic |
| AGAGAGAGAGATTCTCCGAT+GGG | 0.551715 | tig0035147:+7583 | None:intergenic |
| TCTCCGATGGGGACGACGGA+GGG | 0.553306 | tig0035147:+7595 | None:intergenic |
| GTCGTTGATCCTCTTCCGGA+AGG | 0.555563 | tig0035147:-5862 | Msa1454340:CDS |
| CAAATGCCAGATTGGGAAGA+GGG | 0.557171 | tig0035147:+4704 | None:intergenic |
| ACCACACTTTCAGGAACACC+TGG | 0.557951 | tig0035147:+3261 | None:intergenic |
| ACTCAGGGTGAATTGACTTA+CGG | 0.559352 | tig0035147:-3360 | Msa1454340:intron |
| TATTTCTATGAAGATGAAAG+AGG | 0.560544 | tig0035147:-4025 | Msa1454340:CDS |
| GCTGTTGCATCTGCCCTGCA+TGG | 0.561601 | tig0035147:-3849 | Msa1454340:CDS |
| AGATTCTCCGATGGGGACGA+CGG | 0.562487 | tig0035147:+7591 | None:intergenic |
| TCCAGGTGTTCCTGAAAGTG+TGG | 0.563076 | tig0035147:-3262 | Msa1454340:intron |
| AAATACCATGATGAATAGGA+AGG | 0.571694 | tig0035147:+2186 | None:intergenic |
| TTTACAATGTATCCCAATTG+GGG | 0.573299 | tig0035147:+2218 | None:intergenic |
| GATAATCCACTATGGATCAT+CGG | 0.574800 | tig0035147:-6148 | Msa1454340:CDS |
| TATGAAGATGAAAGAGGACC+CGG | 0.576291 | tig0035147:-4019 | Msa1454340:CDS |
| GGTAATGGCAAGTTTCTTGG+TGG | 0.577952 | tig0035147:+3288 | None:intergenic |
| ATTACAGGAGAATTGCCAAT+CGG | 0.588392 | tig0035147:+4574 | None:intergenic |
| GTTCTATCAAGAACTGAGGA+AGG | 0.590370 | tig0035147:-6294 | Msa1454340:five_prime_UTR |
| AGTCTACCTGGATCAGAGAT+GGG | 0.590857 | tig0035147:-5949 | Msa1454340:CDS |
| TCTTGTAAAGATGGTGAATG+AGG | 0.590924 | tig0035147:-2254 | Msa1454340:CDS |
| GATAGTTTAGCTACCGAGGA+TGG | 0.594389 | tig0035147:-6126 | Msa1454340:CDS |
| CGGGTGTGACTACAATATGA+AGG | 0.595934 | tig0035147:-3610 | Msa1454340:intron |
| ATTACTGGTATAAGAAGCAA+AGG | 0.598311 | tig0035147:-5972 | Msa1454340:CDS |
| GCGGTCAACGCAATATGAAA+CGG | 0.598357 | tig0035147:+6036 | None:intergenic |
| AGTTTAGCTACCGAGGATGG+TGG | 0.599053 | tig0035147:-6123 | Msa1454340:CDS |
| TAATGGTGAAGCTCGTGCCA+TGG | 0.610525 | tig0035147:+6227 | None:intergenic |
| CTTTCAGGAACACCTGGAGG+AGG | 0.611273 | tig0035147:+3267 | None:intergenic |
| TTCTCCGATGGGGACGACGG+AGG | 0.613605 | tig0035147:+7594 | None:intergenic |
| GTTGTAGATGGCATCAGTTG+CGG | 0.614966 | tig0035147:+6017 | None:intergenic |
| GAAAGTTTCGGTATCCCATG+GGG | 0.618074 | tig0035147:+3659 | None:intergenic |
| TTATCCTGAGGAGAATGGAC+CGG | 0.623990 | tig0035147:-4611 | Msa1454340:CDS |
| CGTCGTTCTGAATAGACCAT+GGG | 0.624386 | tig0035147:-4886 | Msa1454340:CDS |
| AGCCACTGAACAAAGGCCCA+TGG | 0.626962 | tig0035147:+4870 | None:intergenic |
| AATATGTCTCACGCCATGCA+GGG | 0.632298 | tig0035147:+3836 | None:intergenic |
| ATCGGATAGTTTAGCTACCG+AGG | 0.633568 | tig0035147:-6130 | Msa1454340:CDS |
| GTATTAAAAGGTGTATAGTG+AGG | 0.636150 | tig0035147:+2057 | None:intergenic |
| ACGTCGTTCTGAATAGACCA+TGG | 0.640320 | tig0035147:-4887 | Msa1454340:CDS |
| ATAGAAATATTCATCCATGT+AGG | 0.650200 | tig0035147:+4039 | None:intergenic |
| CTTACGGTAAAATTGGTGAG+TGG | 0.653033 | tig0035147:-3344 | Msa1454340:CDS |
| AAAGTTTCGGTATCCCATGG+GGG | 0.674004 | tig0035147:+3660 | None:intergenic |
| CTACCTGGATCAGAGATGGG+AGG | 0.675794 | tig0035147:-5946 | Msa1454340:CDS |
| GCTTGTTCTATCAAGAACTG+AGG | 0.681392 | tig0035147:-6298 | Msa1454340:five_prime_UTR |
| GAGAGAGAGATTCTCCGATG+GGG | 0.686852 | tig0035147:+7584 | None:intergenic |
| TGTAAGGAAGTATTATCCTG+AGG | 0.689724 | tig0035147:-4623 | Msa1454340:CDS |
| TCTGTCTGATAGGAAGACCA+TGG | 0.702643 | tig0035147:-6244 | Msa1454340:exon |
| ACACTTTCAGGAACACCTGG+AGG | 0.715454 | tig0035147:+3264 | None:intergenic |
| TCTTCCGGAAGGTCTAGACA+GGG | 0.732437 | tig0035147:-5851 | Msa1454340:intron |
| GGACGACGGAGGGAACACGG+CGG | 0.739182 | tig0035147:+7605 | None:intergenic |
| GACAAAAGATCACATCTGCG+AGG | 0.743493 | tig0035147:-3315 | Msa1454340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTCAAATGTTAAAA+TGG | + | tig0035147:4217-4236 | None:intergenic | 10.0% |
| !!! | TTTTAACATTTGAAAATAAA+AGG | - | tig0035147:4217-4236 | Msa1454340:intron | 10.0% |
| !!! | AAATACATTTTATAAATGAT+TGG | + | tig0035147:4534-4553 | None:intergenic | 10.0% |
| !! | TTTATAAAATGTATTTGTTT+AGG | - | tig0035147:4538-4557 | Msa1454340:intron | 10.0% |
| !!! | CATATTTTTTATTTTTTTTC+AGG | - | tig0035147:5559-5578 | Msa1454340:intron | 10.0% |
| !! | ATTTAAATAGTTGTATTAAA+AGG | + | tig0035147:7599-7618 | None:intergenic | 10.0% |
| !!! | TTTAATTGTTTTTAGCTAAT+AGG | + | tig0035147:2008-2027 | None:intergenic | 15.0% |
| !! | ATACAAATTAAAACAGAAAA+TGG | + | tig0035147:2325-2344 | None:intergenic | 15.0% |
| !!! | ATGGATTTATTTCATTTTTT+TGG | - | tig0035147:2754-2773 | Msa1454340:intron | 15.0% |
| !!! | AAATATTTTGTGTATCAATT+TGG | - | tig0035147:4504-4523 | Msa1454340:intron | 15.0% |
| !! | TAAATCAATCTATCAATAAT+AGG | + | tig0035147:4667-4686 | None:intergenic | 15.0% |
| !! | ATTTAAATTGTATTTACTGA+TGG | + | tig0035147:4700-4719 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTCATTTTCTTT+AGG | + | tig0035147:5001-5020 | None:intergenic | 15.0% |
| !! | AAGAAAATGAAAAAATTGTA+AGG | - | tig0035147:5002-5021 | Msa1454340:intron | 15.0% |
| !! | AAACTTCTATTTAATTGAAT+TGG | - | tig0035147:5116-5135 | Msa1454340:intron | 15.0% |
| !! | TACATTATTCATTATACTTA+CGG | - | tig0035147:6011-6030 | Msa1454340:CDS | 15.0% |
| !! | TTTACGAAATTTATCTTATT+AGG | - | tig0035147:6425-6444 | Msa1454340:intron | 15.0% |
| !! | ACAATTAGATAATTATACAT+GGG | + | tig0035147:6570-6589 | None:intergenic | 15.0% |
| !! | ATAATTGTATAGTATATAGA+TGG | - | tig0035147:7209-7228 | Msa1454340:intron | 15.0% |
| !! | TAATTGTATAGTATATAGAT+GGG | - | tig0035147:7210-7229 | Msa1454340:intron | 15.0% |
| !! | ACAAGAGAAAAATAAAATTA+TGG | + | tig0035147:7526-7545 | None:intergenic | 15.0% |
| !! | TAATACAACTATTTAAATGA+AGG | - | tig0035147:7601-7620 | Msa1454340:five_prime_UTR | 15.0% |
| !! | AAGATTCTATTCTTAATGTT+TGG | - | tig0035147:2480-2499 | Msa1454340:intron | 20.0% |
| !! | AAGAATGATTAACACTTTAT+AGG | - | tig0035147:2636-2655 | Msa1454340:intron | 20.0% |
| !! | AATAAGAAACAGTTATATTG+CGG | - | tig0035147:3142-3161 | Msa1454340:intron | 20.0% |
| !! | TGCTAGAATCAAAATTTAAA+TGG | + | tig0035147:3211-3230 | None:intergenic | 20.0% |
| !! | ATACTATTAATTCAATAAGC+TGG | + | tig0035147:3884-3903 | None:intergenic | 20.0% |
| !!! | TTGTAGTTTGTTGTTATAAT+TGG | - | tig0035147:3903-3922 | Msa1454340:intron | 20.0% |
| !! | AGTTTATCAAAATAGCTTAT+GGG | - | tig0035147:3990-4009 | Msa1454340:CDS | 20.0% |
| !! | ATTTGAAAATAAAAGGAATG+CGG | - | tig0035147:4224-4243 | Msa1454340:intron | 20.0% |
| !! | TAAAATCCGACAAAATAATT+TGG | - | tig0035147:4277-4296 | Msa1454340:intron | 20.0% |
| !!! | TTGATGCAGATATATTTTAA+TGG | - | tig0035147:4889-4908 | Msa1454340:CDS | 20.0% |
| !!! | GATTCTTTTTGTTATTGAAA+TGG | - | tig0035147:5712-5731 | Msa1454340:intron | 20.0% |
| !! | ACATTATTCATTATACTTAC+GGG | - | tig0035147:6012-6031 | Msa1454340:CDS | 20.0% |
| !! | AAATTATGGTCTTTGAATAA+TGG | - | tig0035147:6084-6103 | Msa1454340:CDS | 20.0% |
| !!! | ATAGATTTCATTTTTCTTTC+TGG | - | tig0035147:6232-6251 | Msa1454340:exon | 20.0% |
| !! | AATATAGTTTCATAATACTC+AGG | - | tig0035147:6265-6284 | Msa1454340:five_prime_UTR | 20.0% |
| !! | ATATAGTTTCATAATACTCA+GGG | - | tig0035147:6266-6285 | Msa1454340:five_prime_UTR | 20.0% |
| !! | CACAATTAGATAATTATACA+TGG | + | tig0035147:6571-6590 | None:intergenic | 20.0% |
| !! | AAAAATATCTTACTTGACAA+TGG | + | tig0035147:7095-7114 | None:intergenic | 20.0% |
| !!! | GATATTCTTGAATGATATTT+TGG | - | tig0035147:7645-7664 | Msa1454340:five_prime_UTR | 20.0% |
| ! | AAATGGATGAAATTACGATA+AGG | + | tig0035147:2290-2309 | None:intergenic | 25.0% |
| ! | AATGGAAAATTGAAAGGAAA+TGG | + | tig0035147:2307-2326 | None:intergenic | 25.0% |
| ! | ACAGAAAATGGAAAATTGAA+AGG | + | tig0035147:2313-2332 | None:intergenic | 25.0% |
| !! | GAAATAGTTGATTGTTGATT+AGG | - | tig0035147:2675-2694 | Msa1454340:intron | 25.0% |
| ! | TCTTGGCATTATTTAATTGA+TGG | - | tig0035147:2735-2754 | Msa1454340:intron | 25.0% |
| !!! | CTTCATATTTTGAAGAATTG+CGG | - | tig0035147:2844-2863 | Msa1454340:intron | 25.0% |
| ! | AAACTATAAGAGAAACTATC+AGG | - | tig0035147:2986-3005 | Msa1454340:intron | 25.0% |
| !! | TAACGAGTTGGATAAAAATA+TGG | - | tig0035147:3023-3042 | Msa1454340:intron | 25.0% |
| !! | TGGTTTTTGATAGAACATTA+TGG | - | tig0035147:3043-3062 | Msa1454340:intron | 25.0% |
| ! | AAATTTAAATGGCTAGACTA+GGG | + | tig0035147:3200-3219 | None:intergenic | 25.0% |
| ! | AAAATTTAAATGGCTAGACT+AGG | + | tig0035147:3201-3220 | None:intergenic | 25.0% |
| !!! | TTGATTTTTTGATGCACTAA+AGG | - | tig0035147:3265-3284 | Msa1454340:CDS | 25.0% |
| !!! | TGATTTTTTGATGCACTAAA+GGG | - | tig0035147:3266-3285 | Msa1454340:CDS | 25.0% |
| ! | TTCCTTTGCTACATATAATT+TGG | - | tig0035147:3463-3482 | Msa1454340:intron | 25.0% |
| ! | TATACCAGTAATACATGATA+CGG | + | tig0035147:3661-3680 | None:intergenic | 25.0% |
| !! | TTCACTAGAATTTTACATTC+TGG | - | tig0035147:3719-3738 | Msa1454340:intron | 25.0% |
| !!! | TAGAATTTTACATTCTGGAA+AGG | - | tig0035147:3724-3743 | Msa1454340:intron | 25.0% |
| !! | AAAAGTATAACTGAAAGTCA+TGG | + | tig0035147:3828-3847 | None:intergenic | 25.0% |
| !! | TTGTTATAATTGGTCTGTTT+GGG | - | tig0035147:3913-3932 | Msa1454340:intron | 25.0% |
| ! | GAGTTTATCAAAATAGCTTA+TGG | - | tig0035147:3989-4008 | Msa1454340:CDS | 25.0% |
| !! | ATAAGCACTTTTATGATAAG+TGG | - | tig0035147:4120-4139 | Msa1454340:intron | 25.0% |
| !! | ATGTTAAAATGGACTTTAAC+TGG | + | tig0035147:4206-4225 | None:intergenic | 25.0% |
| !!! | GCAATACCAAATTATTTTGT+CGG | + | tig0035147:4286-4305 | None:intergenic | 25.0% |
| ! | GTATTGCTGAAATAATTCAA+GGG | - | tig0035147:4299-4318 | Msa1454340:intron | 25.0% |
| ! | AGATAGAAATAGTATAAGCT+CGG | - | tig0035147:4447-4466 | Msa1454340:intron | 25.0% |
| ! | TATTGCAAAGTTTAGTGTTA+AGG | - | tig0035147:4470-4489 | Msa1454340:intron | 25.0% |
| ! | ATAATAGGAGAATCTTAACA+TGG | + | tig0035147:4652-4671 | None:intergenic | 25.0% |
| ! | AACTAAAACATAGATCACTT+AGG | + | tig0035147:4835-4854 | None:intergenic | 25.0% |
| ! | TTAGGCTTAATGTAGAAAAA+TGG | + | tig0035147:4983-5002 | None:intergenic | 25.0% |
| ! | GCAACAATAACTGATAAAAT+TGG | + | tig0035147:5203-5222 | None:intergenic | 25.0% |
| ! | CCTGTAATAATTTGAGAAAA+TGG | + | tig0035147:5331-5350 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+AGG | - | tig0035147:5328-5347 | Msa1454340:intron | 25.0% |
| ! | ATAGAAATATTCATCCATGT+AGG | + | tig0035147:5605-5624 | None:intergenic | 25.0% |
| !! | TATTTCTATGAAGATGAAAG+AGG | - | tig0035147:5616-5635 | Msa1454340:intron | 25.0% |
| !! | TGACATTGTGTTATGTATTT+TGG | - | tig0035147:5752-5771 | Msa1454340:intron | 25.0% |
| ! | TATAATGTTATCAGCTCAAA+TGG | - | tig0035147:5899-5918 | Msa1454340:CDS | 25.0% |
| ! | AGAAAAGTAAAATCAGAGTT+GGG | + | tig0035147:5944-5963 | None:intergenic | 25.0% |
| ! | AAGAAAAGTAAAATCAGAGT+TGG | + | tig0035147:5945-5964 | None:intergenic | 25.0% |
| !! | AATGTACTTGTTGAAAGTTT+CGG | + | tig0035147:5997-6016 | None:intergenic | 25.0% |
| !! | AATTTTTCCATTCAAGGATT+GGG | + | tig0035147:6069-6088 | None:intergenic | 25.0% |
| !! | TAATTTTTCCATTCAAGGAT+TGG | + | tig0035147:6070-6089 | None:intergenic | 25.0% |
| ! | ATCCTTGAATGGAAAAATTA+TGG | - | tig0035147:6070-6089 | Msa1454340:CDS | 25.0% |
| !!! | AAATCAAGAAGCTTTAAGAA+GGG | + | tig0035147:6136-6155 | None:intergenic | 25.0% |
| !!! | AAAATCAAGAAGCTTTAAGA+AGG | + | tig0035147:6137-6156 | None:intergenic | 25.0% |
| ! | AATTATAGTATCCTAATGTC+AGG | + | tig0035147:6624-6643 | None:intergenic | 25.0% |
| ! | GAGGATAAAAGCAAAATTAT+GGG | + | tig0035147:6733-6752 | None:intergenic | 25.0% |
| ! | TGAGGATAAAAGCAAAATTA+TGG | + | tig0035147:6734-6753 | None:intergenic | 25.0% |
| ! | TTCAACAAGATTAACTAGAA+AGG | + | tig0035147:7145-7164 | None:intergenic | 25.0% |
| !! | TTGTTGAAGTTATGAGATTT+TGG | - | tig0035147:7157-7176 | Msa1454340:intron | 25.0% |
| !! | GTTATGAGATTTTGGATAAA+AGG | - | tig0035147:7165-7184 | Msa1454340:intron | 25.0% |
| ! | CATTATAGCAAACAAATAAC+AGG | + | tig0035147:7355-7374 | None:intergenic | 25.0% |
| !!! | TTGTTTGCTATAATGTTTTC+AGG | - | tig0035147:7360-7379 | Msa1454340:intron | 25.0% |
| ! | ATTTACAATGTATCCCAATT+GGG | + | tig0035147:7427-7446 | None:intergenic | 25.0% |
| ! | TATTTACAATGTATCCCAAT+TGG | + | tig0035147:7428-7447 | None:intergenic | 25.0% |
| ! | CTTTAAATACCATGATGAAT+AGG | + | tig0035147:7462-7481 | None:intergenic | 25.0% |
| !!! | GAAGGATTATATCTTGTTTT+CGG | - | tig0035147:7619-7638 | Msa1454340:five_prime_UTR | 25.0% |
| !!! | AAGGATTATATCTTGTTTTC+GGG | - | tig0035147:7620-7639 | Msa1454340:five_prime_UTR | 25.0% |
| GAGAAGTCTTAATGGAAATA+AGG | + | tig0035147:2178-2197 | None:intergenic | 30.0% | |
| AGACAAAAGAGAAGTCTTAA+TGG | + | tig0035147:2186-2205 | None:intergenic | 30.0% | |
| CGATAAGGAAGAATGAAAAT+GGG | + | tig0035147:2275-2294 | None:intergenic | 30.0% | |
| ACGATAAGGAAGAATGAAAA+TGG | + | tig0035147:2276-2295 | None:intergenic | 30.0% | |
| TTAAACCTGTTATTGCATCT+TGG | - | tig0035147:2718-2737 | Msa1454340:intron | 30.0% | |
| !!! | TTTTTGGCTGATTAATAGTC+TGG | - | tig0035147:2770-2789 | Msa1454340:intron | 30.0% |
| CGCAATTCTTCAAAATATGA+AGG | + | tig0035147:2846-2865 | None:intergenic | 30.0% | |
| TATAAGAGAAACTATCAGGA+AGG | - | tig0035147:2990-3009 | Msa1454340:intron | 30.0% | |
| TTGATATCTTTCTGTCTGAT+AGG | - | tig0035147:3387-3406 | Msa1454340:intron | 30.0% | |
| ACCATTACTGATGATATGTT+TGG | - | tig0035147:3430-3449 | Msa1454340:intron | 30.0% | |
| ACCAAACATATCATCAGTAA+TGG | + | tig0035147:3434-3453 | None:intergenic | 30.0% | |
| CACCAAATTATATGTAGCAA+AGG | + | tig0035147:3468-3487 | None:intergenic | 30.0% | |
| ATTACTGGTATAAGAAGCAA+AGG | - | tig0035147:3669-3688 | Msa1454340:intron | 30.0% | |
| ! | GTTGTTATAATTGGTCTGTT+TGG | - | tig0035147:3912-3931 | Msa1454340:intron | 30.0% |
| ! | GGATTTTACTTCTTTCACAA+AGG | + | tig0035147:4265-4284 | None:intergenic | 30.0% |
| GGTATTGCTGAAATAATTCA+AGG | - | tig0035147:4298-4317 | Msa1454340:intron | 30.0% | |
| ATGATATCAGATTGAGGAAA+GGG | - | tig0035147:4322-4341 | Msa1454340:intron | 30.0% | |
| ! | GTCGTGTGCTTAAATTTTAA+AGG | - | tig0035147:4378-4397 | Msa1454340:intron | 30.0% |
| TTCTATCTTCGACAAACAAA+AGG | + | tig0035147:4435-4454 | None:intergenic | 30.0% | |
| TTTAGGAAGTTACTGTGATA+AGG | - | tig0035147:4555-4574 | Msa1454340:intron | 30.0% | |
| TTATCCGGAAAATCTATTGT+AGG | - | tig0035147:4599-4618 | Msa1454340:CDS | 30.0% | |
| ! | GTTTCCTACAATAGATTTTC+CGG | + | tig0035147:4606-4625 | None:intergenic | 30.0% |
| ATCGGATCAATATTTGTAAC+CGG | + | tig0035147:5052-5071 | None:intergenic | 30.0% | |
| GTTACAAATATTGATCCGAT+TGG | - | tig0035147:5052-5071 | Msa1454340:intron | 30.0% | |
| TTCTCCTGTAATTATCAGAA+AGG | - | tig0035147:5078-5097 | Msa1454340:intron | 30.0% | |
| TCTACCTTTCTGATAATTAC+AGG | + | tig0035147:5085-5104 | None:intergenic | 30.0% | |
| TTTATTCAACCATGAAGAAC+AGG | + | tig0035147:5149-5168 | None:intergenic | 30.0% | |
| ! | CTTGAATCTTTTGAATATGC+TGG | - | tig0035147:5486-5505 | Msa1454340:intron | 30.0% |
| AAAGAATCTGCAACATATGT+CGG | + | tig0035147:5700-5719 | None:intergenic | 30.0% | |
| !!! | TGTTATGTATTTTGGAACCA+AGG | - | tig0035147:5760-5779 | Msa1454340:intron | 30.0% |
| ! | GACCATAATTTTTCCATTCA+AGG | + | tig0035147:6075-6094 | None:intergenic | 30.0% |
| ! | TTGATTTTGTTACTATGCCA+TGG | - | tig0035147:6149-6168 | Msa1454340:CDS | 30.0% |
| ! | GAATTGACTTACGGTAAAAT+TGG | - | tig0035147:6290-6309 | Msa1454340:five_prime_UTR | 30.0% |
| !!! | GTTTTTTTCATTCCCTTACA+TGG | - | tig0035147:6519-6538 | Msa1454340:intron | 30.0% |
| ACATTTATCAAGCACATACA+TGG | + | tig0035147:6664-6683 | None:intergenic | 30.0% | |
| AGAAATATTCTTGTGCATCA+TGG | - | tig0035147:6915-6934 | Msa1454340:intron | 30.0% | |
| ! | TCAGACTAGAAAGATTTTTG+AGG | - | tig0035147:6988-7007 | Msa1454340:intron | 30.0% |
| !!! | AGAAAGATTTTTGAGGTGAT+TGG | - | tig0035147:6995-7014 | Msa1454340:intron | 30.0% |
| TTTACAATGTATCCCAATTG+GGG | + | tig0035147:7426-7445 | None:intergenic | 30.0% | |
| ! | TTTTTCCTTCCTATTCATCA+TGG | - | tig0035147:7450-7469 | Msa1454340:intron | 30.0% |
| AAATACCATGATGAATAGGA+AGG | + | tig0035147:7458-7477 | None:intergenic | 30.0% | |
| ! | GTATTAAAAGGTGTATAGTG+AGG | + | tig0035147:7587-7606 | None:intergenic | 30.0% |
| !!! | AGGATTATATCTTGTTTTCG+GGG | - | tig0035147:7621-7640 | Msa1454340:five_prime_UTR | 30.0% |
| AGAGTGTATTGTGAAAACGA+AGG | + | tig0035147:2212-2231 | None:intergenic | 35.0% | |
| GAAAATGGGTGAATGGAAAA+TGG | + | tig0035147:2261-2280 | None:intergenic | 35.0% | |
| GAAGAATGAAAATGGGTGAA+TGG | + | tig0035147:2268-2287 | None:intergenic | 35.0% | |
| TAATGCCAAGATGCAATAAC+AGG | + | tig0035147:2726-2745 | None:intergenic | 35.0% | |
| ! | GGACAGTTATTTAAAACCCA+GGG | + | tig0035147:2796-2815 | None:intergenic | 35.0% |
| ! | AGGACAGTTATTTAAAACCC+AGG | + | tig0035147:2797-2816 | None:intergenic | 35.0% |
| !!! | TGGGTTTTAAATAACTGTCC+TGG | - | tig0035147:2796-2815 | Msa1454340:intron | 35.0% |
| GAAACTATCAAGTAGACTAG+TGG | - | tig0035147:2912-2931 | Msa1454340:intron | 35.0% | |
| !! | ACTAGTGGATTCTAGTAAGA+AGG | - | tig0035147:2927-2946 | Msa1454340:intron | 35.0% |
| !! | CTAGTGGATTCTAGTAAGAA+GGG | - | tig0035147:2928-2947 | Msa1454340:intron | 35.0% |
| AGTTAGATCACTAGAAGTAG+AGG | - | tig0035147:2952-2971 | Msa1454340:intron | 35.0% | |
| ACTAGAAGTAGAGGAAAACT+TGG | - | tig0035147:2961-2980 | Msa1454340:intron | 35.0% | |
| !! | AATAGCCTTATCTCACTAAG+TGG | + | tig0035147:3093-3112 | None:intergenic | 35.0% |
| !! | CTGATGATATGTTTGGTTCT+TGG | - | tig0035147:3437-3456 | Msa1454340:intron | 35.0% |
| GTGACAATGATAATCCACTA+TGG | - | tig0035147:3485-3504 | Msa1454340:intron | 35.0% | |
| GATAATCCACTATGGATCAT+CGG | - | tig0035147:3493-3512 | Msa1454340:intron | 35.0% | |
| AAAAAACAATCCACCATCCT+CGG | + | tig0035147:3531-3550 | None:intergenic | 35.0% | |
| TTTGTGTTCTTCACATGTTC+AGG | + | tig0035147:3572-3591 | None:intergenic | 35.0% | |
| AATGCCGTATCATGTATTAC+TGG | - | tig0035147:3654-3673 | Msa1454340:CDS | 35.0% | |
| TAACTGAAAGTCATGGTAAG+CGG | + | tig0035147:3821-3840 | None:intergenic | 35.0% | |
| ! | TATAATTGGTCTGTTTGGGT+TGG | - | tig0035147:3917-3936 | Msa1454340:intron | 35.0% |
| ! | AAAATGGACTTTAACTGGCA+TGG | + | tig0035147:4201-4220 | None:intergenic | 35.0% |
| GATGATATCAGATTGAGGAA+AGG | - | tig0035147:4321-4340 | Msa1454340:intron | 35.0% | |
| AGTTTAGTGTTAAGGTTTGC+AGG | - | tig0035147:4478-4497 | Msa1454340:intron | 35.0% | |
| ACACATTGCTTAATCTTTGC+AGG | - | tig0035147:4728-4747 | Msa1454340:CDS | 35.0% | |
| CACATTGCTTAATCTTTGCA+GGG | - | tig0035147:4729-4748 | Msa1454340:CDS | 35.0% | |
| ! | TTTTCTCCAAATGCCAGATT+GGG | + | tig0035147:4947-4966 | None:intergenic | 35.0% |
| ! | ATTTTCTCCAAATGCCAGAT+TGG | + | tig0035147:4948-4967 | None:intergenic | 35.0% |
| TAGAAAAATGGAAAAGCAGC+TGG | + | tig0035147:4971-4990 | None:intergenic | 35.0% | |
| !! | TGTAAGGAAGTATTATCCTG+AGG | - | tig0035147:5018-5037 | Msa1454340:intron | 35.0% |
| AAGTATTATCCTGAGGAGAA+TGG | - | tig0035147:5025-5044 | Msa1454340:intron | 35.0% | |
| ATTACAGGAGAATTGCCAAT+CGG | + | tig0035147:5070-5089 | None:intergenic | 35.0% | |
| GGATTAATACCTGTTCTTCA+TGG | - | tig0035147:5137-5156 | Msa1454340:intron | 35.0% | |
| GGTAAACCAGAACAATGTTA+AGG | + | tig0035147:5182-5201 | None:intergenic | 35.0% | |
| GTTGTGTTGAAAGATCTCAA+TGG | - | tig0035147:5427-5446 | Msa1454340:intron | 35.0% | |
| !!! | GTGAATACTTTTAGCTCACA+CGG | - | tig0035147:5527-5546 | Msa1454340:intron | 35.0% |
| !!! | TGTATTTTGGAACCAAGGTA+TGG | - | tig0035147:5765-5784 | Msa1454340:intron | 35.0% |
| AGTTGGGTATGCATAATAGT+TGG | + | tig0035147:5928-5947 | None:intergenic | 35.0% | |
| TATTTCTCCCAATCCTTGAA+TGG | - | tig0035147:6059-6078 | Msa1454340:CDS | 35.0% | |
| !! | AGAAGCTTTAAGAAGGGAAA+AGG | + | tig0035147:6130-6149 | None:intergenic | 35.0% |
| AAATTAAGCTGTGTGTCTCA+TGG | + | tig0035147:6475-6494 | None:intergenic | 35.0% | |
| ! | TTTTCATTCCCTTACATGGT+AGG | - | tig0035147:6523-6542 | Msa1454340:intron | 35.0% |
| ! | GCTTTTATCCTCATCTATTC+TGG | - | tig0035147:6741-6760 | Msa1454340:intron | 35.0% |
| TTTATCCTCATCTATTCTGG+TGG | - | tig0035147:6744-6763 | Msa1454340:intron | 35.0% | |
| GAAACAACCTACAACATCTA+GGG | + | tig0035147:6953-6972 | None:intergenic | 35.0% | |
| AGCAAATGATACCTCTCTTA+TGG | - | tig0035147:7032-7051 | Msa1454340:intron | 35.0% | |
| TCTTATGGAGAGGAATTCTT+TGG | - | tig0035147:7047-7066 | Msa1454340:intron | 35.0% | |
| TCTTGTAAAGATGGTGAATG+AGG | - | tig0035147:7387-7406 | Msa1454340:intron | 35.0% | |
| !!! | GTCAACACTTTTTCTGTAAC+TGG | + | tig0035147:7496-7515 | None:intergenic | 35.0% |
| !! | CAGAAAAAGTGTTGACATTG+AGG | - | tig0035147:7500-7519 | Msa1454340:intron | 35.0% |
| ! | AAGGTGTATAGTGAGGTATT+TGG | + | tig0035147:7580-7599 | None:intergenic | 35.0% |
| !!! | TATTTTGGCTCGTAACACAA+TGG | - | tig0035147:7660-7679 | Msa1454340:five_prime_UTR | 35.0% |
| CTCTCTGTCTGTTGAAACAA+AGG | - | tig0035147:2099-2118 | Msa1454340:three_prime_UTR | 40.0% | |
| ATGGGTGAATGGAAAATGGA+AGG | + | tig0035147:2257-2276 | None:intergenic | 40.0% | |
| TGAAGAATTGCGGTCAAATG+CGG | - | tig0035147:2854-2873 | Msa1454340:intron | 40.0% | |
| AGAAACTATCAGGAAGGATC+TGG | - | tig0035147:2996-3015 | Msa1454340:intron | 40.0% | |
| CGTATCCACTTAGTGAGATA+AGG | - | tig0035147:3085-3104 | Msa1454340:intron | 40.0% | |
| AAAGTCCGCATTTGCAATCT+GGG | + | tig0035147:3168-3187 | None:intergenic | 40.0% | |
| AAAAGTCCGCATTTGCAATC+TGG | + | tig0035147:3169-3188 | None:intergenic | 40.0% | |
| GCTTGTTCTATCAAGAACTG+AGG | - | tig0035147:3343-3362 | Msa1454340:CDS | 40.0% | |
| GTTCTATCAAGAACTGAGGA+AGG | - | tig0035147:3347-3366 | Msa1454340:CDS | 40.0% | |
| AACTATCCGATGATCCATAG+TGG | + | tig0035147:3502-3521 | None:intergenic | 40.0% | |
| GTTCAGGCATCTCAACAATA+GGG | + | tig0035147:3556-3575 | None:intergenic | 40.0% | |
| TGTTCAGGCATCTCAACAAT+AGG | + | tig0035147:3557-3576 | None:intergenic | 40.0% | |
| CTGATGCCATCTACAACAAA+TGG | - | tig0035147:3630-3649 | Msa1454340:CDS | 40.0% | |
| !! | GCATTGCCATTTGTTGTAGA+TGG | + | tig0035147:3639-3658 | None:intergenic | 40.0% |
| ACTTAGCTGTTTGTCCAAAC+AGG | - | tig0035147:4156-4175 | Msa1454340:intron | 40.0% | |
| CTTAGCTGTTTGTCCAAACA+GGG | - | tig0035147:4157-4176 | Msa1454340:intron | 40.0% | |
| !! | GCATGGAAGTATTCTAGACT+AGG | + | tig0035147:4184-4203 | None:intergenic | 40.0% |
| CAAGGGATGATATCAGATTG+AGG | - | tig0035147:4316-4335 | Msa1454340:intron | 40.0% | |
| GTCCACAAAGACACATTATC+CGG | - | tig0035147:4584-4603 | Msa1454340:CDS | 40.0% | |
| TTCCGGATAATGTGTCTTTG+TGG | + | tig0035147:4589-4608 | None:intergenic | 40.0% | |
| CAGAACAATGTTAAGGACAG+GGG | + | tig0035147:5175-5194 | None:intergenic | 40.0% | |
| CCAGAACAATGTTAAGGACA+GGG | + | tig0035147:5176-5195 | None:intergenic | 40.0% | |
| ACCAGAACAATGTTAAGGAC+AGG | + | tig0035147:5177-5196 | None:intergenic | 40.0% | |
| GCATCGTCACTTCAGATTAA+AGG | - | tig0035147:5239-5258 | Msa1454340:intron | 40.0% | |
| CACAAGTTTCAGTGTCATGT+CGG | + | tig0035147:5291-5310 | None:intergenic | 40.0% | |
| ATCTGTGTATGTGTCATGTC+CGG | - | tig0035147:5385-5404 | Msa1454340:intron | 40.0% | |
| !! | GCTAAAAGTATTCACTTCCC+TGG | + | tig0035147:5522-5541 | None:intergenic | 40.0% |
| TTGCCAAAATTGCTCCTACA+TGG | - | tig0035147:5588-5607 | Msa1454340:intron | 40.0% | |
| ! | CATCCATGTAGGAGCAATTT+TGG | + | tig0035147:5594-5613 | None:intergenic | 40.0% |
| TATGAAGATGAAAGAGGACC+CGG | - | tig0035147:5622-5641 | Msa1454340:intron | 40.0% | |
| TGAAAGTTTCGGTATCCCAT+GGG | + | tig0035147:5986-6005 | None:intergenic | 40.0% | |
| TTGAAAGTTTCGGTATCCCA+TGG | + | tig0035147:5987-6006 | None:intergenic | 40.0% | |
| CCAGCTAAATCAAAGTTCCA+TGG | + | tig0035147:6169-6188 | None:intergenic | 40.0% | |
| ! | CCATGGAACTTTGATTTAGC+TGG | - | tig0035147:6166-6185 | Msa1454340:CDS | 40.0% |
| ATGACATGACAAGTAGCTAG+TGG | + | tig0035147:6214-6233 | None:intergenic | 40.0% | |
| ! | ACTCAGGGTGAATTGACTTA+CGG | - | tig0035147:6281-6300 | Msa1454340:five_prime_UTR | 40.0% |
| CTTACGGTAAAATTGGTGAG+TGG | - | tig0035147:6297-6316 | Msa1454340:five_prime_UTR | 40.0% | |
| TGTAGACATACCACACTTTC+AGG | + | tig0035147:6392-6411 | None:intergenic | 40.0% | |
| TCTTCTCACCTACCATGTAA+GGG | + | tig0035147:6534-6553 | None:intergenic | 40.0% | |
| TTCTTCTCACCTACCATGTA+AGG | + | tig0035147:6535-6554 | None:intergenic | 40.0% | |
| AAGCGAATCAAAGGACTGTT+TGG | + | tig0035147:6689-6708 | None:intergenic | 40.0% | |
| TCTGGCTATAAGCGAATCAA+AGG | + | tig0035147:6698-6717 | None:intergenic | 40.0% | |
| CTTACTTCCCTAGATGTTGT+AGG | - | tig0035147:6943-6962 | Msa1454340:intron | 40.0% | |
| GGAAACAACCTACAACATCT+AGG | + | tig0035147:6954-6973 | None:intergenic | 40.0% | |
| ATGATACCTCTCTTATGGAG+AGG | - | tig0035147:7037-7056 | Msa1454340:intron | 40.0% | |
| AGAATTCCTCTCCATAAGAG+AGG | + | tig0035147:7046-7065 | None:intergenic | 40.0% | |
| GACAATGGTCACTAACATCT+AGG | + | tig0035147:7080-7099 | None:intergenic | 40.0% | |
| ATGAACTAGACAGCAACTGT+CGG | + | tig0035147:7266-7285 | None:intergenic | 40.0% | |
| ! | TAATGCAATGCTTTTGCTGC+TGG | + | tig0035147:7327-7346 | None:intergenic | 40.0% |
| TCAGGTGACTCTTGTAAAGA+TGG | - | tig0035147:7378-7397 | Msa1454340:intron | 40.0% | |
| TTCTGCTAACATCCCCAATT+GGG | - | tig0035147:7411-7430 | Msa1454340:intron | 40.0% | |
| AGAGAGAGAGATTCTCCGAT+GGG | + | tig0035147:2061-2080 | None:intergenic | 45.0% | |
| CTGATTAATAGTCTGGCCCT+GGG | - | tig0035147:2777-2796 | Msa1454340:intron | 45.0% | |
| GCTTAATTGCGGTCACATTG+CGG | - | tig0035147:2885-2904 | Msa1454340:intron | 45.0% | |
| GGATCTGGAGATTAACGAGT+TGG | - | tig0035147:3011-3030 | Msa1454340:intron | 45.0% | |
| TTGATTCTAGCAGTGCACTC+TGG | - | tig0035147:3219-3238 | Msa1454340:intron | 45.0% | |
| TCTGTCTGATAGGAAGACCA+TGG | - | tig0035147:3397-3416 | Msa1454340:intron | 45.0% | |
| ATCGGATAGTTTAGCTACCG+AGG | - | tig0035147:3511-3530 | Msa1454340:intron | 45.0% | |
| GATAGTTTAGCTACCGAGGA+TGG | - | tig0035147:3515-3534 | Msa1454340:intron | 45.0% | |
| GCGGTCAACGCAATATGAAA+CGG | + | tig0035147:3608-3627 | None:intergenic | 45.0% | |
| GTTGTAGATGGCATCAGTTG+CGG | + | tig0035147:3627-3646 | None:intergenic | 45.0% | |
| AAGAAGCAAAGGAGTCTACC+TGG | - | tig0035147:3680-3699 | Msa1454340:intron | 45.0% | |
| AGTCTACCTGGATCAGAGAT+GGG | - | tig0035147:3692-3711 | Msa1454340:intron | 45.0% | |
| TGGAAAGGCTGACAACTTGA+TGG | - | tig0035147:3739-3758 | Msa1454340:intron | 45.0% | |
| TTCTAGACTAGGACCCTGTT+TGG | + | tig0035147:4173-4192 | None:intergenic | 45.0% | |
| ! | ACGTCGTTCTGAATAGACCA+TGG | - | tig0035147:4754-4773 | Msa1454340:intron | 45.0% |
| ! | CGTCGTTCTGAATAGACCAT+GGG | - | tig0035147:4755-4774 | Msa1454340:intron | 45.0% |
| ! | CTTTTCCAGCCACTGAACAA+AGG | + | tig0035147:4781-4800 | None:intergenic | 45.0% |
| CTTTGTTCAGTGGCTGGAAA+AGG | - | tig0035147:4779-4798 | Msa1454340:intron | 45.0% | |
| CAAATGCCAGATTGGGAAGA+GGG | + | tig0035147:4940-4959 | None:intergenic | 45.0% | |
| TTATCCTGAGGAGAATGGAC+CGG | - | tig0035147:5030-5049 | Msa1454340:intron | 45.0% | |
| CCCTGTCCTTAACATTGTTC+TGG | - | tig0035147:5173-5192 | Msa1454340:intron | 45.0% | |
| GAACTATGAACCACAGACAC+CGG | + | tig0035147:5407-5426 | None:intergenic | 45.0% | |
| !! | TATGCTGGTTCGATAAGACC+AGG | - | tig0035147:5501-5520 | Msa1454340:intron | 45.0% |
| !! | ATGCTGGTTCGATAAGACCA+GGG | - | tig0035147:5502-5521 | Msa1454340:intron | 45.0% |
| !!! | TACTTTTAGCTCACACGGTG+AGG | - | tig0035147:5532-5551 | Msa1454340:intron | 45.0% |
| !!! | ACTTTTAGCTCACACGGTGA+GGG | - | tig0035147:5533-5552 | Msa1454340:intron | 45.0% |
| ! | AGACCGACAAAGCTTTTGGA+TGG | - | tig0035147:5645-5664 | Msa1454340:intron | 45.0% |
| ! | GACCGACAAAGCTTTTGGAT+GGG | - | tig0035147:5646-5665 | Msa1454340:intron | 45.0% |
| ! | CACCCATCCAAAAGCTTTGT+CGG | + | tig0035147:5651-5670 | None:intergenic | 45.0% |
| GCAACAGCATAACCATACCT+TGG | + | tig0035147:5780-5799 | None:intergenic | 45.0% | |
| AATATGTCTCACGCCATGCA+GGG | + | tig0035147:5808-5827 | None:intergenic | 45.0% | |
| GCGAAAAGACTTCATGCTAC+AGG | - | tig0035147:5830-5849 | Msa1454340:intron | 45.0% | |
| AAAGTTTCGGTATCCCATGG+GGG | + | tig0035147:5984-6003 | None:intergenic | 45.0% | |
| GAAAGTTTCGGTATCCCATG+GGG | + | tig0035147:5985-6004 | None:intergenic | 45.0% | |
| CGGGTGTGACTACAATATGA+AGG | - | tig0035147:6031-6050 | Msa1454340:CDS | 45.0% | |
| GACAAAAGATCACATCTGCG+AGG | - | tig0035147:6326-6345 | Msa1454340:intron | 45.0% | |
| AATGGCAAGTTTCTTGGTGG+TGG | + | tig0035147:6353-6372 | None:intergenic | 45.0% | |
| ! | GGTAATGGCAAGTTTCTTGG+TGG | + | tig0035147:6356-6375 | None:intergenic | 45.0% |
| ! | GGAGGTAATGGCAAGTTTCT+TGG | + | tig0035147:6359-6378 | None:intergenic | 45.0% |
| TATGGGCATCTGAGAAGTTC+TGG | + | tig0035147:6716-6735 | None:intergenic | 45.0% | |
| TACAGCCACCAGAATAGATG+AGG | + | tig0035147:6752-6771 | None:intergenic | 45.0% | |
| CTATTCTGGTGGCTGTAGAA+CGG | - | tig0035147:6755-6774 | Msa1454340:intron | 45.0% | |
| GTAGAACAATTGTCGAAGCC+CGG | + | tig0035147:6857-6876 | None:intergenic | 45.0% | |
| CTTCTGCTAACATCCCCAAT+TGG | - | tig0035147:7410-7429 | Msa1454340:intron | 45.0% | |
| !!! | TTTAATTTGTAAAATAAAAA+GGG | + | tig0035147:2586-2605 | None:intergenic | 5.0% |
| !!! | TTTTAATTTGTAAAATAAAA+AGG | + | tig0035147:2587-2606 | None:intergenic | 5.0% |
| GAGAGAGAGATTCTCCGATG+GGG | + | tig0035147:2060-2079 | None:intergenic | 50.0% | |
| GAGAGAGAGAGATTCTCCGA+TGG | + | tig0035147:2062-2081 | None:intergenic | 50.0% | |
| GCTGATTAATAGTCTGGCCC+TGG | - | tig0035147:2776-2795 | Msa1454340:intron | 50.0% | |
| CGGCTGATGTGGCTTAATTG+CGG | - | tig0035147:2874-2893 | Msa1454340:intron | 50.0% | |
| TAATGGTGAAGCTCGTGCCA+TGG | + | tig0035147:3417-3436 | None:intergenic | 50.0% | |
| AGTTTAGCTACCGAGGATGG+TGG | - | tig0035147:3518-3537 | Msa1454340:intron | 50.0% | |
| GAGTCTACCTGGATCAGAGA+TGG | - | tig0035147:3691-3710 | Msa1454340:intron | 50.0% | |
| AATCCTCCCATCTCTGATCC+AGG | + | tig0035147:3701-3720 | None:intergenic | 50.0% | |
| AGAGGATCAACGACGACAGT+AGG | + | tig0035147:3773-3792 | None:intergenic | 50.0% | |
| TGTCGTCGTTGATCCTCTTC+CGG | - | tig0035147:3775-3794 | Msa1454340:intron | 50.0% | |
| TCTTCCGGAAGGTCTAGACA+GGG | - | tig0035147:3790-3809 | Msa1454340:intron | 50.0% | |
| GGGCGTACAAATACGTGATC+AGG | + | tig0035147:4920-4939 | None:intergenic | 50.0% | |
| CCAAATGCCAGATTGGGAAG+AGG | + | tig0035147:4941-4960 | None:intergenic | 50.0% | |
| CCTCTTCCCAATCTGGCATT+TGG | - | tig0035147:4938-4957 | Msa1454340:intron | 50.0% | |
| TGACGTGTCTGTGTCGTGTA+CGG | - | tig0035147:5354-5373 | Msa1454340:intron | 50.0% | |
| !!! | CTTTTAGCTCACACGGTGAG+GGG | - | tig0035147:5534-5553 | Msa1454340:intron | 50.0% |
| ! | CAAAAGCTTTGTCGGTCTCC+GGG | + | tig0035147:5643-5662 | None:intergenic | 50.0% |
| ! | CCAAAAGCTTTGTCGGTCTC+CGG | + | tig0035147:5644-5663 | None:intergenic | 50.0% |
| ! | CAAAGCTTTTGGATGGGTGC+TGG | - | tig0035147:5652-5671 | Msa1454340:intron | 50.0% |
| GAATATGTCTCACGCCATGC+AGG | + | tig0035147:5809-5828 | None:intergenic | 50.0% | |
| ! | ATGTGACTTTTCAGCCCCCA+TGG | - | tig0035147:5967-5986 | Msa1454340:CDS | 50.0% |
| ! | TGTGACTTTTCAGCCCCCAT+GGG | - | tig0035147:5968-5987 | Msa1454340:CDS | 50.0% |
| AACTTGCCATTACCTCCTCC+AGG | - | tig0035147:6362-6381 | Msa1454340:intron | 50.0% | |
| ACACTTTCAGGAACACCTGG+AGG | + | tig0035147:6380-6399 | None:intergenic | 50.0% | |
| TCCAGGTGTTCCTGAAAGTG+TGG | - | tig0035147:6379-6398 | Msa1454340:intron | 50.0% | |
| ACCACACTTTCAGGAACACC+TGG | + | tig0035147:6383-6402 | None:intergenic | 50.0% | |
| CTAATGTCAGGCAGCACTAG+AGG | + | tig0035147:6612-6631 | None:intergenic | 50.0% | |
| CTCTAGTGCTGCCTGACATT+AGG | - | tig0035147:6610-6629 | Msa1454340:intron | 50.0% | |
| TATAGGTGGTAGGGTAGGGT+GGG | - | tig0035147:6787-6806 | Msa1454340:intron | 50.0% | |
| ! | AAGATTGGCCGCAATCTGAG+CGG | + | tig0035147:6818-6837 | None:intergenic | 50.0% |
| ! | AACTGTCGGTTAAGCAGTGG+GGG | + | tig0035147:7252-7271 | None:intergenic | 50.0% |
| ! | CAACTGTCGGTTAAGCAGTG+GGG | + | tig0035147:7253-7272 | None:intergenic | 50.0% |
| ! | GCAACTGTCGGTTAAGCAGT+GGG | + | tig0035147:7254-7273 | None:intergenic | 50.0% |
| ! | AGCAACTGTCGGTTAAGCAG+TGG | + | tig0035147:7255-7274 | None:intergenic | 50.0% |
| AGATTCTCCGATGGGGACGA+CGG | + | tig0035147:2053-2072 | None:intergenic | 55.0% | |
| ACGCGACTGCGACTATTACC+AGG | + | tig0035147:2817-2836 | None:intergenic | 55.0% | |
| TGCGGCCCAGATTGCAAATG+CGG | - | tig0035147:3160-3179 | Msa1454340:intron | 55.0% | |
| CTACCTGGATCAGAGATGGG+AGG | - | tig0035147:3695-3714 | Msa1454340:intron | 55.0% | |
| GTCGTTGATCCTCTTCCGGA+AGG | - | tig0035147:3779-3798 | Msa1454340:intron | 55.0% | |
| CTGTCTAGACCTTCCGGAAG+AGG | + | tig0035147:3791-3810 | None:intergenic | 55.0% | |
| CTCTTCCGGAAGGTCTAGAC+AGG | - | tig0035147:3789-3808 | Msa1454340:intron | 55.0% | |
| CTCACCCTGTCTAGACCTTC+CGG | + | tig0035147:3797-3816 | None:intergenic | 55.0% | |
| GACCATGGGCCTTTGTTCAG+TGG | - | tig0035147:4769-4788 | Msa1454340:intron | 55.0% | |
| AGCCACTGAACAAAGGCCCA+TGG | + | tig0035147:4774-4793 | None:intergenic | 55.0% | |
| ATGGGCCTTTGTTCAGTGGC+TGG | - | tig0035147:4773-4792 | Msa1454340:intron | 55.0% | |
| TGTACGCCCTCTTCCCAATC+TGG | - | tig0035147:4931-4950 | Msa1454340:intron | 55.0% | |
| GTAACCGGTCCATTCTCCTC+AGG | + | tig0035147:5037-5056 | None:intergenic | 55.0% | |
| TCTGTGTCGTGTACGGTGTC+TGG | - | tig0035147:5361-5380 | Msa1454340:intron | 55.0% | |
| TGTGTCATGTCCGGTGTCTG+TGG | - | tig0035147:5394-5413 | Msa1454340:intron | 55.0% | |
| ! | CCGGAGACCGACAAAGCTTT+TGG | - | tig0035147:5641-5660 | Msa1454340:intron | 55.0% |
| GGAACACCTGGAGGAGGTAA+TGG | + | tig0035147:6371-6390 | None:intergenic | 55.0% | |
| CTTTCAGGAACACCTGGAGG+AGG | + | tig0035147:6377-6396 | None:intergenic | 55.0% | |
| TCTGGTGGCTGTAGAACGGA+CGG | - | tig0035147:6759-6778 | Msa1454340:intron | 55.0% | |
| CCTACCCTACCACCTATAGG+CGG | + | tig0035147:6785-6804 | None:intergenic | 55.0% | |
| CGCCTATAGGTGGTAGGGTA+GGG | - | tig0035147:6783-6802 | Msa1454340:intron | 55.0% | |
| CACCCTACCCTACCACCTAT+AGG | + | tig0035147:6788-6807 | None:intergenic | 55.0% | |
| CTATAGGTGGTAGGGTAGGG+TGG | - | tig0035147:6786-6805 | Msa1454340:intron | 55.0% | |
| CTGCGCGCTGTTAGGAAGAT+TGG | + | tig0035147:6833-6852 | None:intergenic | 55.0% | |
| ! | ACTGTCGGTTAAGCAGTGGG+GGG | + | tig0035147:7251-7270 | None:intergenic | 55.0% |
| GCGGTCAAATGCGGCTGATG+TGG | - | tig0035147:2863-2882 | Msa1454340:intron | 60.0% | |
| CGGAAGGTCTAGACAGGGTG+AGG | - | tig0035147:3795-3814 | Msa1454340:intron | 60.0% | |
| GGACGACACGTGTCAGACTC+TGG | + | tig0035147:5270-5289 | None:intergenic | 60.0% | |
| GCTGTTGCATCTGCCCTGCA+TGG | - | tig0035147:5792-5811 | Msa1454340:intron | 60.0% | |
| TAGAACGGACGGCCGCCTAT+AGG | - | tig0035147:6770-6789 | Msa1454340:intron | 60.0% | |
| ACGGCCGCCTATAGGTGGTA+GGG | - | tig0035147:6778-6797 | Msa1454340:intron | 60.0% | |
| CCGCCTATAGGTGGTAGGGT+AGG | - | tig0035147:6782-6801 | Msa1454340:intron | 60.0% | |
| GGGTGGTACCGCTCAGATTG+CGG | - | tig0035147:6807-6826 | Msa1454340:intron | 60.0% | |
| CTTCCTAACAGCGCGCAGAC+CGG | - | tig0035147:6835-6854 | Msa1454340:intron | 60.0% | |
| TTCCTAACAGCGCGCAGACC+GGG | - | tig0035147:6836-6855 | Msa1454340:intron | 60.0% | |
| TGGGGACGACGGAGGGAACA+CGG | + | tig0035147:2042-2061 | None:intergenic | 65.0% | |
| GTTCCCTCCGTCGTCCCCAT+CGG | - | tig0035147:2043-2062 | Msa1454340:three_prime_UTR | 65.0% | |
| TCTCCGATGGGGACGACGGA+GGG | + | tig0035147:2049-2068 | None:intergenic | 65.0% | |
| TTCTCCGATGGGGACGACGG+AGG | + | tig0035147:2050-2069 | None:intergenic | 65.0% | |
| AACGGACGGCCGCCTATAGG+TGG | - | tig0035147:6773-6792 | Msa1454340:intron | 65.0% | |
| GACGGCCGCCTATAGGTGGT+AGG | - | tig0035147:6777-6796 | Msa1454340:intron | 65.0% | |
| AGGTGGTAGGGTAGGGTGGG+TGG | - | tig0035147:6790-6809 | Msa1454340:intron | 65.0% | |
| GGACGACGGAGGGAACACGG+CGG | + | tig0035147:2039-2058 | None:intergenic | 70.0% | |
| AGCCCGGTCTGCGCGCTGTT+AGG | + | tig0035147:6841-6860 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035147 | gene | 1979 | 7684 | 1979 | ID=Msa1454340;Name=Msa1454340 |
| tig0035147 | mRNA | 1979 | 7684 | 1979 | ID=Msa1454340-mRNA-1;Parent=Msa1454340;Name=Msa1454340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=227|1|1|1|0.87|0.77|9|240|360 |
| tig0035147 | exon | 1979 | 2281 | 1979 | ID=Msa1454340-mRNA-1:exon:19693;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 3263 | 3376 | 3263 | ID=Msa1454340-mRNA-1:exon:19692;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 3611 | 3682 | 3611 | ID=Msa1454340-mRNA-1:exon:19691;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 3812 | 3881 | 3812 | ID=Msa1454340-mRNA-1:exon:19690;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 3985 | 4082 | 3985 | ID=Msa1454340-mRNA-1:exon:19689;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 4564 | 4765 | 4564 | ID=Msa1454340-mRNA-1:exon:19688;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 4846 | 4913 | 4846 | ID=Msa1454340-mRNA-1:exon:19687;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 5852 | 6332 | 5852 | ID=Msa1454340-mRNA-1:exon:19686;Parent=Msa1454340-mRNA-1 |
| tig0035147 | exon | 7543 | 7684 | 7543 | ID=Msa1454340-mRNA-1:exon:19685;Parent=Msa1454340-mRNA-1 |
| tig0035147 | five_prime_UTR | 7543 | 7684 | 7543 | ID=Msa1454340-mRNA-1:five_prime_utr;Parent=Msa1454340-mRNA-1 |
| tig0035147 | five_prime_UTR | 6248 | 6332 | 6248 | ID=Msa1454340-mRNA-1:five_prime_utr;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 5852 | 6247 | 5852 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 4846 | 4913 | 4846 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 4564 | 4765 | 4564 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 3985 | 4082 | 3985 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 3812 | 3881 | 3812 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 3611 | 3682 | 3611 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 3263 | 3376 | 3263 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | CDS | 2219 | 2281 | 2219 | ID=Msa1454340-mRNA-1:cds;Parent=Msa1454340-mRNA-1 |
| tig0035147 | three_prime_UTR | 1979 | 2218 | 1979 | ID=Msa1454340-mRNA-1:three_prime_utr;Parent=Msa1454340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
