AlfalfaGEDB | Msa1218190

M. sativa cultivar zhongmu-4 / Msa1218190

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218190	XP_013458291.3	98.734	158	2	0	1	158	1	158	1.92e-106	310

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218190	sp\|Q06930\|ABR18_PEA	80.380	158	31	0	1	158	1	158	6.57e-89	259

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038180	Msa1218190	0.831727	1.416830e-55	-8.615850e-47
Msa0633630	Msa1218190	0.811036	8.559176e-51	-8.615850e-47
Msa0705520	Msa1218190	0.804289	2.320356e-49	-8.615850e-47
Msa0789220	Msa1218190	0.816872	4.419903e-52	-8.615850e-47
Msa0826360	Msa1218190	0.802972	4.352724e-49	-8.615850e-47
Msa0132110	Msa1218190	0.838000	3.728665e-57	-8.615850e-47
Msa0138830	Msa1218190	0.935009	1.661867e-96	-8.615850e-47
Msa0138840	Msa1218190	0.927612	9.224405e-92	-8.615850e-47
Msa0138850	Msa1218190	0.926890	2.515864e-91	-8.615850e-47
Msa0138860	Msa1218190	0.897659	1.134640e-76	-8.615850e-47
Msa0138870	Msa1218190	0.991826	9.311343e-190	-8.615850e-47
Msa0174990	Msa1218190	0.833712	4.556350e-56	-8.615850e-47
Msa0188970	Msa1218190	0.810320	1.222068e-50	-8.615850e-47
Msa0210790	Msa1218190	0.801543	8.567787e-49	-8.615850e-47
Msa0224210	Msa1218190	0.814444	1.536093e-51	-8.615850e-47
Msa0369760	Msa1218190	0.807821	4.190559e-50	-8.615850e-47
Msa0390790	Msa1218190	0.823139	1.627044e-53	-8.615850e-47
Msa0463970	Msa1218190	0.818042	2.408905e-52	-8.615850e-47
Msa1041260	Msa1218190	0.802252	6.126607e-49	-8.615850e-47
Msa0242710	Msa1218190	0.822718	2.039474e-53	-8.615850e-47
Msa0242720	Msa1218190	0.813742	2.194639e-51	-8.615850e-47
Msa0251120	Msa1218190	0.819496	1.126346e-52	-8.615850e-47
Msa0280990	Msa1218190	0.804011	2.651086e-49	-8.615850e-47
Msa0303650	Msa1218190	0.816980	4.180946e-52	-8.615850e-47
Msa0320160	Msa1218190	0.826728	2.312885e-54	-8.615850e-47
Msa1131770	Msa1218190	0.805911	1.062098e-49	-8.615850e-47
Msa1165660	Msa1218190	0.810632	1.046728e-50	-8.615850e-47
Msa1179340	Msa1218190	0.818228	2.186515e-52	-8.615850e-47
Msa1218190	Msa1218200	0.909545	5.057677e-82	-8.615850e-47
Msa1218190	Msa1233090	0.807428	5.078296e-50	-8.615850e-47
Msa1218190	Msa1275220	0.839784	1.288010e-57	-8.615850e-47
Msa1218190	Msa1309040	0.813091	3.050411e-51	-8.615850e-47
Msa1218190	Msa1313720	0.813114	3.015023e-51	-8.615850e-47
Msa1218190	Msa1366470	0.800278	1.553133e-48	-8.615850e-47
Msa1218190	Msa1454340	0.805087	1.581361e-49	-8.615850e-47
Msa0484410	Msa1218190	0.800826	1.201220e-48	-8.615850e-47
Msa0509520	Msa1218190	0.811046	8.513137e-51	-8.615850e-47
Msa0546880	Msa1218190	0.822820	1.930091e-53	-8.615850e-47
Msa0580730	Msa1218190	0.911093	8.978254e-83	-8.615850e-47
Msa0584370	Msa1218190	0.829033	6.454361e-55	-8.615850e-47
Msa0588880	Msa1218190	0.821106	4.817027e-53	-8.615850e-47
Msa0593600	Msa1218190	0.826789	2.236527e-54	-8.615850e-47
Msa0869660	Msa1218190	0.805409	1.353723e-49	-8.615850e-47
Msa0893490	Msa1218190	0.900918	4.525056e-78	-8.615850e-47
Msa0935440	Msa1218190	0.801761	7.730555e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218190	MtrunA17_Chr4g0067951	98.734	158	2	0	1	158	1	158	1.76e-110	310
Msa1218190	MtrunA17_Chr6g0462311	97.468	158	4	0	1	158	1	158	3.45e-109	307
Msa1218190	MtrunA17_Chr6g0462291	85.455	165	15	2	1	158	1	163	6.87e-95	271
Msa1218190	MtrunA17_Chr2g0295064	74.684	158	40	0	1	158	68	225	8.54e-83	243
Msa1218190	MtrunA17_Chr2g0295021	73.248	157	42	0	1	157	1	157	1.86e-81	237
Msa1218190	MtrunA17_Chr2g0295001	73.248	157	42	0	1	157	1	157	1.86e-81	237
Msa1218190	MtrunA17_Chr2g0295051	70.701	157	46	0	1	157	1	157	2.97e-79	231
Msa1218190	MtrunA17_Chr2g0295041	68.987	158	49	0	1	158	1	158	8.22e-77	225
Msa1218190	MtrunA17_Chr2g0295141	63.694	157	57	0	1	157	1	157	2.24e-68	204
Msa1218190	MtrunA17_Chr2g0295104	64.331	157	56	0	1	157	1	157	3.82e-68	203
Msa1218190	MtrunA17_Chr2g0295091	64.331	157	56	0	1	157	1	157	1.23e-67	202
Msa1218190	MtrunA17_Chr2g0295124	64.968	157	55	0	1	157	1	157	1.01e-66	200
Msa1218190	MtrunA17_Chr2g0295081	55.414	157	70	0	1	157	1	157	1.87e-56	174
Msa1218190	MtrunA17_Chr4g0067921	45.342	161	83	4	1	158	1	159	2.57e-36	123
Msa1218190	MtrunA17_Chr2g0295211	37.821	156	96	1	1	155	1	156	5.94e-34	117
Msa1218190	MtrunA17_Chr4g0067841	37.580	157	97	1	1	156	1	157	8.87e-34	116

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 62 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATGTTTGGTTTGATAATT+TGG	0.145886	8_1:+80740120	None:intergenic
TTAACAACAAATATACTATT+TGG	0.161955	8_1:+80739216	None:intergenic
CTTCATCAATTGCATCAATT+TGG	0.214492	8_1:+80739691	None:intergenic
TTGATGGCATCAACAGCTTT+TGG	0.227157	8_1:+80740008	None:intergenic
GATATCATTTGAAGCGAAAT+TGG	0.228714	8_1:-80739607	Msa1218190:CDS
AGGATGGATTAGTTGTAATT+AGG	0.259719	8_1:+80739435	None:intergenic
GGCCATTGAGGGTTATGTTT+TGG	0.293726	8_1:-80739463	Msa1218190:CDS
ATTTGGTGATGAAGTTCTAA+TGG	0.299038	8_1:+80740137	None:intergenic
AATTTGGTGCAACACGTATA+AGG	0.315485	8_1:+80739707	None:intergenic
GGTCCAAATGGAGGGTCTAT+TGG	0.333504	8_1:-80739579	Msa1218190:CDS
TCCTTTGGTTTGATATTTAA+CGG	0.347214	8_1:+80739548	None:intergenic
GACGGTTTCAACACTCTTGA+TGG	0.351518	8_1:+80739992	None:intergenic
GTCCAAATGGAGGGTCTATT+GGG	0.390136	8_1:-80739578	Msa1218190:CDS
AATTGGCTTAGCATCTCCTT+TGG	0.398977	8_1:+80739533	None:intergenic
TATAGTATAGTTGGAGGAGT+AGG	0.400784	8_1:-80739651	Msa1218190:CDS
TTTGGTGATGAAGTTCTAAT+GGG	0.409031	8_1:+80740138	None:intergenic
TTCCCAATAGACCCTCCATT+TGG	0.416216	8_1:+80739576	None:intergenic
TGCAATTGATGAAGCAAACT+TGG	0.424818	8_1:-80739682	Msa1218190:CDS
AATGTGAATACACCCATGTT+TGG	0.426195	8_1:+80740107	None:intergenic
AGAGCTTTGTAAAGCTTAGC+AGG	0.435032	8_1:+80740056	None:intergenic
AACGAAAGTGAGCTTCTTGA+CGG	0.435771	8_1:+80739947	None:intergenic
GTTGAAACCGTCGAGGGAAA+TGG	0.443139	8_1:-80739981	Msa1218190:CDS
AAGAAGCTCACTTTCGTTGA+GGG	0.454166	8_1:-80739942	Msa1218190:intron
GGATTAGTTGTAATTAGGAT+TGG	0.464473	8_1:+80739440	None:intergenic
TCATGTTTAATGACGATAGT+AGG	0.467767	8_1:+80739395	None:intergenic
CCAAATTATCAAACCAAACA+TGG	0.473191	8_1:-80740120	Msa1218190:exon
GGTTGAGGAAGGCAAGGCAA+AGG	0.481278	8_1:-80739502	Msa1218190:CDS
TTTGAAGCGAAATTGGTTGA+AGG	0.487809	8_1:-80739600	Msa1218190:CDS
GGGTATAACTATAGTATAGT+TGG	0.489142	8_1:-80739660	Msa1218190:CDS
ATAGTATAGTTGGAGGAGTA+GGG	0.491450	8_1:-80739650	Msa1218190:CDS
TCTCACAGTTCAATAGCAAA+AGG	0.508434	8_1:+80739299	None:intergenic
AGATGCTAAGCCAATTGAAA+AGG	0.515464	8_1:-80739526	Msa1218190:CDS
GCCAATTGAAAAGGAGGTTG+AGG	0.520188	8_1:-80739517	Msa1218190:CDS
GGCCAAAACATAACCCTCAA+TGG	0.521409	8_1:+80739461	None:intergenic
GTCGAGGGAAATGGTGGTGC+CGG	0.524142	8_1:-80739972	Msa1218190:CDS
GGCACCACCATTTCCCTCGA+CGG	0.527211	8_1:+80739974	None:intergenic
AGTAGGAAGACTTGGACACT+TGG	0.530837	8_1:+80739412	None:intergenic
AGTGAGCTTCTTGACGGTGC+CGG	0.531057	8_1:+80739953	None:intergenic
CAAGAAGCTCACTTTCGTTG+AGG	0.534631	8_1:-80739943	Msa1218190:CDS
AGACTTGGACACTTGGAGGA+TGG	0.543020	8_1:+80739419	None:intergenic
GTTGAGGAAGGCAAGGCAAA+GGG	0.544771	8_1:-80739501	Msa1218190:CDS
ATGACGATAGTAGGAAGACT+TGG	0.552149	8_1:+80739404	None:intergenic
AAATTGGTTGAAGGTCCAAA+TGG	0.568255	8_1:-80739591	Msa1218190:CDS
GCAATTGATGAAGCAAACTT+GGG	0.569895	8_1:-80739681	Msa1218190:CDS
AGGAAGACTTGGACACTTGG+AGG	0.583414	8_1:+80739415	None:intergenic
TATAACTATAGTATAGTTGG+AGG	0.584231	8_1:-80739657	Msa1218190:CDS
AGCAGGAGCAACTGTAGAGG+TGG	0.585421	8_1:+80740073	None:intergenic
AAATGAACACTTTATTACAA+CGG	0.587582	8_1:+80739332	None:intergenic
CTTAGCAGGAGCAACTGTAG+AGG	0.591469	8_1:+80740070	None:intergenic
TGCTAAGCCAATTGAAAAGG+AGG	0.591628	8_1:-80739523	Msa1218190:CDS
ACCGTTAAATATCAAACCAA+AGG	0.596206	8_1:-80739549	Msa1218190:CDS
AGGAGTAGGGTTGCCAGACA+CGG	0.598102	8_1:-80739637	Msa1218190:CDS
TGGTTGAAGGTCCAAATGGA+GGG	0.601542	8_1:-80739587	Msa1218190:CDS
TTGGTTGAAGGTCCAAATGG+AGG	0.609517	8_1:-80739588	Msa1218190:CDS
ATTGAAAAGGAGGTTGAGGA+AGG	0.616285	8_1:-80739513	Msa1218190:CDS
AAAGGAGGTTGAGGAAGGCA+AGG	0.629508	8_1:-80739508	Msa1218190:CDS
CAAATTATCAAACCAAACAT+GGG	0.651382	8_1:-80740119	Msa1218190:exon
AAGAGTGTTGAAACCGTCGA+GGG	0.665491	8_1:-80739987	Msa1218190:CDS
CAAGAGTGTTGAAACCGTCG+AGG	0.677120	8_1:-80739988	Msa1218190:CDS
GAAACCGTCGAGGGAAATGG+TGG	0.692349	8_1:-80739978	Msa1218190:CDS
CAATTGATGAAGCAAACTTG+GGG	0.696928	8_1:-80739680	Msa1218190:CDS
TAGATATGTATGTTAGTGTG+TGG	0.718892	8_1:+80740192	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAACAACAAATATACTATT+TGG	+	chr8_1:80740143-80740162	None:intergenic	15.0%
!!	TTAACAACAAATATACTATT+TGG	+	chr8_1:80740143-80740162	None:intergenic	15.0%
!!	ATCACAACTACTATTTATAT+AGG	+	chr8_1:80739584-80739603	None:intergenic	20.0%
!!	AAATGAACACTTTATTACAA+CGG	+	chr8_1:80740027-80740046	None:intergenic	20.0%
!!	ATCACAACTACTATTTATAT+AGG	+	chr8_1:80739584-80739603	None:intergenic	20.0%
!!	AAATGAACACTTTATTACAA+CGG	+	chr8_1:80740027-80740046	None:intergenic	20.0%
!	CAAATTATCAAACCAAACAT+GGG	-	chr8_1:80739237-80739256	Msa1218190:three_prime_UTR	25.0%
!	AAAGATAAGTTAAGAGTGAT+TGG	+	chr8_1:80739505-80739524	None:intergenic	25.0%
!	TATAACTATAGTATAGTTGG+AGG	-	chr8_1:80739699-80739718	Msa1218190:CDS	25.0%
!!!	TCCTTTGGTTTGATATTTAA+CGG	+	chr8_1:80739811-80739830	None:intergenic	25.0%
!	CAAATTATCAAACCAAACAT+GGG	-	chr8_1:80739237-80739256	Msa1218190:three_prime_UTR	25.0%
!	AAAGATAAGTTAAGAGTGAT+TGG	+	chr8_1:80739505-80739524	None:intergenic	25.0%
!	TATAACTATAGTATAGTTGG+AGG	-	chr8_1:80739699-80739718	Msa1218190:CDS	25.0%
!!!	TCCTTTGGTTTGATATTTAA+CGG	+	chr8_1:80739811-80739830	None:intergenic	25.0%
!!	TTTGGTGATGAAGTTCTAAT+GGG	+	chr8_1:80739221-80739240	None:intergenic	30.0%
!!	ATTTGGTGATGAAGTTCTAA+TGG	+	chr8_1:80739222-80739241	None:intergenic	30.0%
!!	CCATGTTTGGTTTGATAATT+TGG	+	chr8_1:80739239-80739258	None:intergenic	30.0%
	CCAAATTATCAAACCAAACA+TGG	-	chr8_1:80739236-80739255	Msa1218190:three_prime_UTR	30.0%
!!!	ATTGGAGAAGTTTTAAACAC+GGG	+	chr8_1:80739487-80739506	None:intergenic	30.0%
!!!	GATTGGAGAAGTTTTAAACA+CGG	+	chr8_1:80739488-80739507	None:intergenic	30.0%
	CTTCATCAATTGCATCAATT+TGG	+	chr8_1:80739668-80739687	None:intergenic	30.0%
	GGGTATAACTATAGTATAGT+TGG	-	chr8_1:80739696-80739715	Msa1218190:CDS	30.0%
!	GATATCATTTGAAGCGAAAT+TGG	-	chr8_1:80739749-80739768	Msa1218190:intron	30.0%
	ACCGTTAAATATCAAACCAA+AGG	-	chr8_1:80739807-80739826	Msa1218190:intron	30.0%
!!	GGATTAGTTGTAATTAGGAT+TGG	+	chr8_1:80739919-80739938	None:intergenic	30.0%
!!	AGGATGGATTAGTTGTAATT+AGG	+	chr8_1:80739924-80739943	None:intergenic	30.0%
	TCATGTTTAATGACGATAGT+AGG	+	chr8_1:80739964-80739983	None:intergenic	30.0%
!!	TTTGGTGATGAAGTTCTAAT+GGG	+	chr8_1:80739221-80739240	None:intergenic	30.0%
!!	ATTTGGTGATGAAGTTCTAA+TGG	+	chr8_1:80739222-80739241	None:intergenic	30.0%
!!	CCATGTTTGGTTTGATAATT+TGG	+	chr8_1:80739239-80739258	None:intergenic	30.0%
	CCAAATTATCAAACCAAACA+TGG	-	chr8_1:80739236-80739255	Msa1218190:three_prime_UTR	30.0%
!!!	ATTGGAGAAGTTTTAAACAC+GGG	+	chr8_1:80739487-80739506	None:intergenic	30.0%
!!!	GATTGGAGAAGTTTTAAACA+CGG	+	chr8_1:80739488-80739507	None:intergenic	30.0%
	CTTCATCAATTGCATCAATT+TGG	+	chr8_1:80739668-80739687	None:intergenic	30.0%
	GGGTATAACTATAGTATAGT+TGG	-	chr8_1:80739696-80739715	Msa1218190:CDS	30.0%
!	GATATCATTTGAAGCGAAAT+TGG	-	chr8_1:80739749-80739768	Msa1218190:intron	30.0%
	ACCGTTAAATATCAAACCAA+AGG	-	chr8_1:80739807-80739826	Msa1218190:intron	30.0%
!!	GGATTAGTTGTAATTAGGAT+TGG	+	chr8_1:80739919-80739938	None:intergenic	30.0%
!!	AGGATGGATTAGTTGTAATT+AGG	+	chr8_1:80739924-80739943	None:intergenic	30.0%
	TCATGTTTAATGACGATAGT+AGG	+	chr8_1:80739964-80739983	None:intergenic	30.0%
	AATGTGAATACACCCATGTT+TGG	+	chr8_1:80739252-80739271	None:intergenic	35.0%
!!	AATTTGGTGCAACACGTATA+AGG	+	chr8_1:80739652-80739671	None:intergenic	35.0%
	TGCAATTGATGAAGCAAACT+TGG	-	chr8_1:80739674-80739693	Msa1218190:CDS	35.0%
	GCAATTGATGAAGCAAACTT+GGG	-	chr8_1:80739675-80739694	Msa1218190:CDS	35.0%
	CAATTGATGAAGCAAACTTG+GGG	-	chr8_1:80739676-80739695	Msa1218190:CDS	35.0%
	TATAGTATAGTTGGAGGAGT+AGG	-	chr8_1:80739705-80739724	Msa1218190:CDS	35.0%
	ATAGTATAGTTGGAGGAGTA+GGG	-	chr8_1:80739706-80739725	Msa1218190:CDS	35.0%
!	TTTGAAGCGAAATTGGTTGA+AGG	-	chr8_1:80739756-80739775	Msa1218190:intron	35.0%
	AAATTGGTTGAAGGTCCAAA+TGG	-	chr8_1:80739765-80739784	Msa1218190:intron	35.0%
	AGATGCTAAGCCAATTGAAA+AGG	-	chr8_1:80739830-80739849	Msa1218190:intron	35.0%
	TCTCACAGTTCAATAGCAAA+AGG	+	chr8_1:80740060-80740079	None:intergenic	35.0%
	AATGTGAATACACCCATGTT+TGG	+	chr8_1:80739252-80739271	None:intergenic	35.0%
!!	AATTTGGTGCAACACGTATA+AGG	+	chr8_1:80739652-80739671	None:intergenic	35.0%
	TGCAATTGATGAAGCAAACT+TGG	-	chr8_1:80739674-80739693	Msa1218190:CDS	35.0%
	GCAATTGATGAAGCAAACTT+GGG	-	chr8_1:80739675-80739694	Msa1218190:CDS	35.0%
	CAATTGATGAAGCAAACTTG+GGG	-	chr8_1:80739676-80739695	Msa1218190:CDS	35.0%
	TATAGTATAGTTGGAGGAGT+AGG	-	chr8_1:80739705-80739724	Msa1218190:CDS	35.0%
	ATAGTATAGTTGGAGGAGTA+GGG	-	chr8_1:80739706-80739725	Msa1218190:CDS	35.0%
!	TTTGAAGCGAAATTGGTTGA+AGG	-	chr8_1:80739756-80739775	Msa1218190:intron	35.0%
	AAATTGGTTGAAGGTCCAAA+TGG	-	chr8_1:80739765-80739784	Msa1218190:intron	35.0%
	AGATGCTAAGCCAATTGAAA+AGG	-	chr8_1:80739830-80739849	Msa1218190:intron	35.0%
	TCTCACAGTTCAATAGCAAA+AGG	+	chr8_1:80740060-80740079	None:intergenic	35.0%
!	AGAGCTTTGTAAAGCTTAGC+AGG	+	chr8_1:80739303-80739322	None:intergenic	40.0%
!	TGATGGCATCAACAGCTTTT+GGG	+	chr8_1:80739350-80739369	None:intergenic	40.0%
!!	TTGATGGCATCAACAGCTTT+TGG	+	chr8_1:80739351-80739370	None:intergenic	40.0%
	AACGAAAGTGAGCTTCTTGA+CGG	+	chr8_1:80739412-80739431	None:intergenic	40.0%
	AAGAAGCTCACTTTCGTTGA+GGG	-	chr8_1:80739414-80739433	Msa1218190:three_prime_UTR	40.0%
	TCACCAACATATATGTCTGC+AGG	-	chr8_1:80739618-80739637	Msa1218190:CDS	40.0%
!	GATATCTTTTCAACCGTGTC+TGG	+	chr8_1:80739735-80739754	None:intergenic	40.0%
!	AATTGGCTTAGCATCTCCTT+TGG	+	chr8_1:80739826-80739845	None:intergenic	40.0%
	TGCTAAGCCAATTGAAAAGG+AGG	-	chr8_1:80739833-80739852	Msa1218190:intron	40.0%
!	TCCTCAACCTCCTTTTCAAT+TGG	+	chr8_1:80739843-80739862	None:intergenic	40.0%
	ATTGAAAAGGAGGTTGAGGA+AGG	-	chr8_1:80739843-80739862	Msa1218190:intron	40.0%
!	AAAGGGTGATGCTCTTTTCA+AGG	-	chr8_1:80739872-80739891	Msa1218190:intron	40.0%
	ATGACGATAGTAGGAAGACT+TGG	+	chr8_1:80739955-80739974	None:intergenic	40.0%
!	AGAGCTTTGTAAAGCTTAGC+AGG	+	chr8_1:80739303-80739322	None:intergenic	40.0%
!	TGATGGCATCAACAGCTTTT+GGG	+	chr8_1:80739350-80739369	None:intergenic	40.0%
!!	TTGATGGCATCAACAGCTTT+TGG	+	chr8_1:80739351-80739370	None:intergenic	40.0%
	AACGAAAGTGAGCTTCTTGA+CGG	+	chr8_1:80739412-80739431	None:intergenic	40.0%
	AAGAAGCTCACTTTCGTTGA+GGG	-	chr8_1:80739414-80739433	Msa1218190:three_prime_UTR	40.0%
	TCACCAACATATATGTCTGC+AGG	-	chr8_1:80739618-80739637	Msa1218190:CDS	40.0%
!	GATATCTTTTCAACCGTGTC+TGG	+	chr8_1:80739735-80739754	None:intergenic	40.0%
!	AATTGGCTTAGCATCTCCTT+TGG	+	chr8_1:80739826-80739845	None:intergenic	40.0%
	TGCTAAGCCAATTGAAAAGG+AGG	-	chr8_1:80739833-80739852	Msa1218190:intron	40.0%
!	TCCTCAACCTCCTTTTCAAT+TGG	+	chr8_1:80739843-80739862	None:intergenic	40.0%
	ATTGAAAAGGAGGTTGAGGA+AGG	-	chr8_1:80739843-80739862	Msa1218190:intron	40.0%
!	AAAGGGTGATGCTCTTTTCA+AGG	-	chr8_1:80739872-80739891	Msa1218190:intron	40.0%
	ATGACGATAGTAGGAAGACT+TGG	+	chr8_1:80739955-80739974	None:intergenic	40.0%
	GACGGTTTCAACACTCTTGA+TGG	+	chr8_1:80739367-80739386	None:intergenic	45.0%
!!	AAGAGTGTTGAAACCGTCGA+GGG	-	chr8_1:80739369-80739388	Msa1218190:three_prime_UTR	45.0%
	CAAGAAGCTCACTTTCGTTG+AGG	-	chr8_1:80739413-80739432	Msa1218190:three_prime_UTR	45.0%
	CCTCCTGCAGACATATATGT+TGG	+	chr8_1:80739624-80739643	None:intergenic	45.0%
	CCAACATATATGTCTGCAGG+AGG	-	chr8_1:80739621-80739640	Msa1218190:CDS	45.0%
	TTGGTTGAAGGTCCAAATGG+AGG	-	chr8_1:80739768-80739787	Msa1218190:intron	45.0%
	TGGTTGAAGGTCCAAATGGA+GGG	-	chr8_1:80739769-80739788	Msa1218190:intron	45.0%
	GTCCAAATGGAGGGTCTATT+GGG	-	chr8_1:80739778-80739797	Msa1218190:intron	45.0%
	TTCCCAATAGACCCTCCATT+TGG	+	chr8_1:80739783-80739802	None:intergenic	45.0%
	GCCAATTGAAAAGGAGGTTG+AGG	-	chr8_1:80739839-80739858	Msa1218190:intron	45.0%
!!	TGCTCTTTTCAAGGCCATTG+AGG	-	chr8_1:80739881-80739900	Msa1218190:intron	45.0%
!!	GCTCTTTTCAAGGCCATTGA+GGG	-	chr8_1:80739882-80739901	Msa1218190:intron	45.0%
!	GGCCATTGAGGGTTATGTTT+TGG	-	chr8_1:80739893-80739912	Msa1218190:intron	45.0%
	GGCCAAAACATAACCCTCAA+TGG	+	chr8_1:80739898-80739917	None:intergenic	45.0%
	AGTAGGAAGACTTGGACACT+TGG	+	chr8_1:80739947-80739966	None:intergenic	45.0%
	GACGGTTTCAACACTCTTGA+TGG	+	chr8_1:80739367-80739386	None:intergenic	45.0%
!!	AAGAGTGTTGAAACCGTCGA+GGG	-	chr8_1:80739369-80739388	Msa1218190:three_prime_UTR	45.0%
	CAAGAAGCTCACTTTCGTTG+AGG	-	chr8_1:80739413-80739432	Msa1218190:three_prime_UTR	45.0%
	CCTCCTGCAGACATATATGT+TGG	+	chr8_1:80739624-80739643	None:intergenic	45.0%
	CCAACATATATGTCTGCAGG+AGG	-	chr8_1:80739621-80739640	Msa1218190:CDS	45.0%
	TTGGTTGAAGGTCCAAATGG+AGG	-	chr8_1:80739768-80739787	Msa1218190:intron	45.0%
	TGGTTGAAGGTCCAAATGGA+GGG	-	chr8_1:80739769-80739788	Msa1218190:intron	45.0%
	GTCCAAATGGAGGGTCTATT+GGG	-	chr8_1:80739778-80739797	Msa1218190:intron	45.0%
	TTCCCAATAGACCCTCCATT+TGG	+	chr8_1:80739783-80739802	None:intergenic	45.0%
	GCCAATTGAAAAGGAGGTTG+AGG	-	chr8_1:80739839-80739858	Msa1218190:intron	45.0%
!!	TGCTCTTTTCAAGGCCATTG+AGG	-	chr8_1:80739881-80739900	Msa1218190:intron	45.0%
!!	GCTCTTTTCAAGGCCATTGA+GGG	-	chr8_1:80739882-80739901	Msa1218190:intron	45.0%
!	GGCCATTGAGGGTTATGTTT+TGG	-	chr8_1:80739893-80739912	Msa1218190:intron	45.0%
	GGCCAAAACATAACCCTCAA+TGG	+	chr8_1:80739898-80739917	None:intergenic	45.0%
	AGTAGGAAGACTTGGACACT+TGG	+	chr8_1:80739947-80739966	None:intergenic	45.0%
	CTTAGCAGGAGCAACTGTAG+AGG	+	chr8_1:80739289-80739308	None:intergenic	50.0%
!!	CAAGAGTGTTGAAACCGTCG+AGG	-	chr8_1:80739368-80739387	Msa1218190:three_prime_UTR	50.0%
	GTTGAAACCGTCGAGGGAAA+TGG	-	chr8_1:80739375-80739394	Msa1218190:three_prime_UTR	50.0%
	GGTCCAAATGGAGGGTCTAT+TGG	-	chr8_1:80739777-80739796	Msa1218190:intron	50.0%
	AAAGGAGGTTGAGGAAGGCA+AGG	-	chr8_1:80739848-80739867	Msa1218190:intron	50.0%
	GTTGAGGAAGGCAAGGCAAA+GGG	-	chr8_1:80739855-80739874	Msa1218190:intron	50.0%
	AGACTTGGACACTTGGAGGA+TGG	+	chr8_1:80739940-80739959	None:intergenic	50.0%
	AGGAAGACTTGGACACTTGG+AGG	+	chr8_1:80739944-80739963	None:intergenic	50.0%
	CTTAGCAGGAGCAACTGTAG+AGG	+	chr8_1:80739289-80739308	None:intergenic	50.0%
!!	CAAGAGTGTTGAAACCGTCG+AGG	-	chr8_1:80739368-80739387	Msa1218190:three_prime_UTR	50.0%
	GTTGAAACCGTCGAGGGAAA+TGG	-	chr8_1:80739375-80739394	Msa1218190:three_prime_UTR	50.0%
	GGTCCAAATGGAGGGTCTAT+TGG	-	chr8_1:80739777-80739796	Msa1218190:intron	50.0%
	AAAGGAGGTTGAGGAAGGCA+AGG	-	chr8_1:80739848-80739867	Msa1218190:intron	50.0%
	GTTGAGGAAGGCAAGGCAAA+GGG	-	chr8_1:80739855-80739874	Msa1218190:intron	50.0%
	AGACTTGGACACTTGGAGGA+TGG	+	chr8_1:80739940-80739959	None:intergenic	50.0%
	AGGAAGACTTGGACACTTGG+AGG	+	chr8_1:80739944-80739963	None:intergenic	50.0%
	AGCAGGAGCAACTGTAGAGG+TGG	+	chr8_1:80739286-80739305	None:intergenic	55.0%
	GAAACCGTCGAGGGAAATGG+TGG	-	chr8_1:80739378-80739397	Msa1218190:three_prime_UTR	55.0%
	AGTGAGCTTCTTGACGGTGC+CGG	+	chr8_1:80739406-80739425	None:intergenic	55.0%
	AGGAGTAGGGTTGCCAGACA+CGG	-	chr8_1:80739719-80739738	Msa1218190:CDS	55.0%
	GGTTGAGGAAGGCAAGGCAA+AGG	-	chr8_1:80739854-80739873	Msa1218190:intron	55.0%
	AGCAGGAGCAACTGTAGAGG+TGG	+	chr8_1:80739286-80739305	None:intergenic	55.0%
	GAAACCGTCGAGGGAAATGG+TGG	-	chr8_1:80739378-80739397	Msa1218190:three_prime_UTR	55.0%
	AGTGAGCTTCTTGACGGTGC+CGG	+	chr8_1:80739406-80739425	None:intergenic	55.0%
	AGGAGTAGGGTTGCCAGACA+CGG	-	chr8_1:80739719-80739738	Msa1218190:CDS	55.0%
	GGTTGAGGAAGGCAAGGCAA+AGG	-	chr8_1:80739854-80739873	Msa1218190:intron	55.0%
	GGCACCACCATTTCCCTCGA+CGG	+	chr8_1:80739385-80739404	None:intergenic	60.0%
!	GTCGAGGGAAATGGTGGTGC+CGG	-	chr8_1:80739384-80739403	Msa1218190:three_prime_UTR	60.0%
	GGCACCACCATTTCCCTCGA+CGG	+	chr8_1:80739385-80739404	None:intergenic	60.0%
!	GTCGAGGGAAATGGTGGTGC+CGG	-	chr8_1:80739384-80739403	Msa1218190:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	80739166	80740212	80739166	ID=Msa1218190;Name=Msa1218190
chr8_1	mRNA	80739166	80740212	80739166	ID=Msa1218190-mRNA-1;Parent=Msa1218190;Name=Msa1218190-mRNA-1;_AED=0.33;_eAED=0.33;_QI=89\|1\|1\|1\|1\|1\|2\|277\|158
chr8_1	exon	80739166	80739738	80739166	ID=Msa1218190-mRNA-1:exon:28448;Parent=Msa1218190-mRNA-1
chr8_1	exon	80739943	80740212	80739943	ID=Msa1218190-mRNA-1:exon:28447;Parent=Msa1218190-mRNA-1
chr8_1	five_prime_UTR	80740124	80740212	80740124	ID=Msa1218190-mRNA-1:five_prime_utr;Parent=Msa1218190-mRNA-1
chr8_1	CDS	80739943	80740123	80739943	ID=Msa1218190-mRNA-1:cds;Parent=Msa1218190-mRNA-1
chr8_1	CDS	80739443	80739738	80739443	ID=Msa1218190-mRNA-1:cds;Parent=Msa1218190-mRNA-1
chr8_1	three_prime_UTR	80739166	80739442	80739166	ID=Msa1218190-mRNA-1:three_prime_utr;Parent=Msa1218190-mRNA-1

Gene Sequence

>Msa1218190

ATGGGTGTATTCACATTTGAGCAAGAAACCACCTCTACAGTTGCTCCTGCTAAGCTTTACAAAGCTCTTGTGCATGACTCAGATGATATTATCCCAAAAGCTGTTGATGCCATCAAGAGTGTTGAAACCGTCGAGGGAAATGGTGGTGCCGGCACCGTCAAGAAGCTCACTTTCGTTGAGGGAGGACAAACCTTATACGTGTTGCACCAAATTGATGCAATTGATGAAGCAAACTTGGGGTATAACTATAGTATAGTTGGAGGAGTAGGGTTGCCAGACACGGTTGAAAAGATATCATTTGAAGCGAAATTGGTTGAAGGTCCAAATGGAGGGTCTATTGGGAAGACGACCGTTAAATATCAAACCAAAGGAGATGCTAAGCCAATTGAAAAGGAGGTTGAGGAAGGCAAGGCAAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTATGTTTTGGCCAATCCTAATTACAACTAA

Protein sequence

>Msa1218190

MGVFTFEQETTSTVAPAKLYKALVHDSDDIIPKAVDAIKSVETVEGNGGAGTVKKLTFVEGGQTLYVLHQIDAIDEANLGYNYSIVGGVGLPDTVEKISFEAKLVEGPNGGSIGKTTVKYQTKGDAKPIEKEVEEGKAKGDALFKAIEGYVLANPNYN*