Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138870 | sp|Q06930|ABR18_PEA | 80.380 | 158 | 31 | 0 | 1 | 158 | 1 | 158 | 6.57e-89 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138870 | A0A396IFH7 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 9.15e-107 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038180 | Msa0138870 | 0.831127 | 1.990299e-55 | -8.615850e-47 |
| Msa0132110 | Msa0138870 | 0.836982 | 6.800606e-57 | -8.615850e-47 |
| Msa0138830 | Msa0138870 | 0.946349 | 5.468300e-105 | -8.615850e-47 |
| Msa0138840 | Msa0138870 | 0.937824 | 1.845087e-98 | -8.615850e-47 |
| Msa0138850 | Msa0138870 | 0.935633 | 6.237920e-97 | -8.615850e-47 |
| Msa0138860 | Msa0138870 | 0.905476 | 4.122908e-80 | -8.615850e-47 |
| Msa0138870 | Msa0174990 | 0.835653 | 1.480553e-56 | -8.615850e-47 |
| Msa0138870 | Msa0188970 | 0.805497 | 1.297222e-49 | -8.615850e-47 |
| Msa0138870 | Msa0224210 | 0.814677 | 1.364314e-51 | -8.615850e-47 |
| Msa0138870 | Msa0242710 | 0.816338 | 5.823168e-52 | -8.615850e-47 |
| Msa0138870 | Msa0242720 | 0.821103 | 4.823662e-53 | -8.615850e-47 |
| Msa0138870 | Msa0251120 | 0.815749 | 7.881221e-52 | -8.615850e-47 |
| Msa0138870 | Msa0280990 | 0.802824 | 4.669337e-49 | -8.615850e-47 |
| Msa0138870 | Msa0303650 | 0.811491 | 6.818303e-51 | -8.615850e-47 |
| Msa0138870 | Msa0320160 | 0.819338 | 1.224083e-52 | -8.615850e-47 |
| Msa0138870 | Msa0369760 | 0.810623 | 1.051401e-50 | -8.615850e-47 |
| Msa0138870 | Msa0390790 | 0.823634 | 1.246564e-53 | -8.615850e-47 |
| Msa0138870 | Msa0463970 | 0.820068 | 8.337038e-53 | -8.615850e-47 |
| Msa0138870 | Msa0509520 | 0.814220 | 1.721367e-51 | -8.615850e-47 |
| Msa0138870 | Msa0546880 | 0.824204 | 9.163544e-54 | -8.615850e-47 |
| Msa0138870 | Msa0580730 | 0.921461 | 3.471629e-88 | -8.615850e-47 |
| Msa0138870 | Msa0584370 | 0.827714 | 1.343408e-54 | -8.615850e-47 |
| Msa0138870 | Msa0588880 | 0.821470 | 3.969150e-53 | -8.615850e-47 |
| Msa0138870 | Msa0593600 | 0.823731 | 1.182733e-53 | -8.615850e-47 |
| Msa0138870 | Msa0633630 | 0.809831 | 1.558191e-50 | -8.615850e-47 |
| Msa0138870 | Msa0705520 | 0.803226 | 3.856056e-49 | -8.615850e-47 |
| Msa0138870 | Msa0789220 | 0.817220 | 3.692873e-52 | -8.615850e-47 |
| Msa0138870 | Msa0869660 | 0.806164 | 9.397593e-50 | -8.615850e-47 |
| Msa0138870 | Msa0893490 | 0.903085 | 4.993258e-79 | -8.615850e-47 |
| Msa0138870 | Msa0935440 | 0.805616 | 1.224862e-49 | -8.615850e-47 |
| Msa0138870 | Msa1131770 | 0.803565 | 3.280397e-49 | -8.615850e-47 |
| Msa0138870 | Msa1165660 | 0.802621 | 5.144487e-49 | -8.615850e-47 |
| Msa0138870 | Msa1179340 | 0.822992 | 1.760349e-53 | -8.615850e-47 |
| Msa0138870 | Msa1218190 | 0.991826 | 9.311343e-190 | -8.615850e-47 |
| Msa0138870 | Msa1218200 | 0.920547 | 1.114513e-87 | -8.615850e-47 |
| Msa0138870 | Msa1233090 | 0.812184 | 4.815824e-51 | -8.615850e-47 |
| Msa0138870 | Msa1275220 | 0.842197 | 2.994769e-58 | -8.615850e-47 |
| Msa0138870 | Msa1309040 | 0.809484 | 1.849504e-50 | -8.615850e-47 |
| Msa0138870 | Msa1313720 | 0.815000 | 1.156542e-51 | -8.615850e-47 |
| Msa0138870 | Msa1454340 | 0.809363 | 1.963193e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138870 | MtrunA17_Chr4g0067951 | 98.734 | 158 | 2 | 0 | 1 | 158 | 1 | 158 | 1.76e-110 | 310 |
| Msa0138870 | MtrunA17_Chr6g0462311 | 97.468 | 158 | 4 | 0 | 1 | 158 | 1 | 158 | 3.45e-109 | 307 |
| Msa0138870 | MtrunA17_Chr6g0462291 | 85.455 | 165 | 15 | 2 | 1 | 158 | 1 | 163 | 6.87e-95 | 271 |
| Msa0138870 | MtrunA17_Chr2g0295064 | 74.684 | 158 | 40 | 0 | 1 | 158 | 68 | 225 | 8.54e-83 | 243 |
| Msa0138870 | MtrunA17_Chr2g0295021 | 73.248 | 157 | 42 | 0 | 1 | 157 | 1 | 157 | 1.86e-81 | 237 |
| Msa0138870 | MtrunA17_Chr2g0295001 | 73.248 | 157 | 42 | 0 | 1 | 157 | 1 | 157 | 1.86e-81 | 237 |
| Msa0138870 | MtrunA17_Chr2g0295051 | 70.701 | 157 | 46 | 0 | 1 | 157 | 1 | 157 | 2.97e-79 | 231 |
| Msa0138870 | MtrunA17_Chr2g0295041 | 68.987 | 158 | 49 | 0 | 1 | 158 | 1 | 158 | 8.22e-77 | 225 |
| Msa0138870 | MtrunA17_Chr2g0295141 | 63.694 | 157 | 57 | 0 | 1 | 157 | 1 | 157 | 2.24e-68 | 204 |
| Msa0138870 | MtrunA17_Chr2g0295104 | 64.331 | 157 | 56 | 0 | 1 | 157 | 1 | 157 | 3.82e-68 | 203 |
| Msa0138870 | MtrunA17_Chr2g0295091 | 64.331 | 157 | 56 | 0 | 1 | 157 | 1 | 157 | 1.23e-67 | 202 |
| Msa0138870 | MtrunA17_Chr2g0295124 | 64.968 | 157 | 55 | 0 | 1 | 157 | 1 | 157 | 1.01e-66 | 200 |
| Msa0138870 | MtrunA17_Chr2g0295081 | 55.414 | 157 | 70 | 0 | 1 | 157 | 1 | 157 | 1.87e-56 | 174 |
| Msa0138870 | MtrunA17_Chr4g0067921 | 45.342 | 161 | 83 | 4 | 1 | 158 | 1 | 159 | 2.57e-36 | 123 |
| Msa0138870 | MtrunA17_Chr2g0295211 | 37.821 | 156 | 96 | 1 | 1 | 155 | 1 | 156 | 5.94e-34 | 117 |
| Msa0138870 | MtrunA17_Chr4g0067841 | 37.580 | 157 | 97 | 1 | 1 | 156 | 1 | 157 | 8.87e-34 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGTTTGGTTTGATAATT+TGG | 0.145886 | 1_3:-72103865 | None:intergenic |
| TTAACAACAAATATACTATT+TGG | 0.161955 | 1_3:-72104769 | None:intergenic |
| CTTCATCAATTGCATCAATT+TGG | 0.214492 | 1_3:-72104294 | None:intergenic |
| TTGATGGCATCAACAGCTTT+TGG | 0.227157 | 1_3:-72103977 | None:intergenic |
| GATATCATTTGAAGCGAAAT+TGG | 0.228714 | 1_3:+72104378 | Msa0138870:CDS |
| AGGATGGATTAGTTGTAATT+AGG | 0.259719 | 1_3:-72104550 | None:intergenic |
| GGCCATTGAGGGTTATGTTT+TGG | 0.293726 | 1_3:+72104522 | Msa0138870:CDS |
| ATTTGGTGATGAAGTTCTAA+TGG | 0.299038 | 1_3:-72103848 | None:intergenic |
| AATTTGGTGCAACACGTATA+AGG | 0.315485 | 1_3:-72104278 | None:intergenic |
| GGTCCAAATGGAGGGTCTAT+TGG | 0.333504 | 1_3:+72104406 | Msa0138870:CDS |
| TCCTTTGGTTTGATATTTAA+CGG | 0.347214 | 1_3:-72104437 | None:intergenic |
| GACGGTTTCAACACTCTTGA+TGG | 0.351518 | 1_3:-72103993 | None:intergenic |
| GTCCAAATGGAGGGTCTATT+GGG | 0.390136 | 1_3:+72104407 | Msa0138870:CDS |
| AATTGGCTTAGCATCTCCTT+TGG | 0.398977 | 1_3:-72104452 | None:intergenic |
| TATAGTATAGTTGGAGGAGT+AGG | 0.400784 | 1_3:+72104334 | Msa0138870:CDS |
| TTTGGTGATGAAGTTCTAAT+GGG | 0.409031 | 1_3:-72103847 | None:intergenic |
| TTCCCAATAGACCCTCCATT+TGG | 0.416216 | 1_3:-72104409 | None:intergenic |
| TGCAATTGATGAAGCAAACT+TGG | 0.424818 | 1_3:+72104303 | Msa0138870:CDS |
| AATGTGAATACACCCATGTT+TGG | 0.426195 | 1_3:-72103878 | None:intergenic |
| AGAGCTTTGTAAAGCTTAGC+AGG | 0.435032 | 1_3:-72103929 | None:intergenic |
| AACGAAAGTGAGCTTCTTGA+CGG | 0.435771 | 1_3:-72104038 | None:intergenic |
| GTTGAAACCGTCGAGGGAAA+TGG | 0.443139 | 1_3:+72104004 | Msa0138870:CDS |
| AAGAAGCTCACTTTCGTTGA+GGG | 0.454166 | 1_3:+72104043 | Msa0138870:CDS |
| GGATTAGTTGTAATTAGGAT+TGG | 0.464473 | 1_3:-72104545 | None:intergenic |
| TCATGTTTAATGACGATAGT+AGG | 0.467767 | 1_3:-72104590 | None:intergenic |
| CCAAATTATCAAACCAAACA+TGG | 0.473191 | 1_3:+72103865 | Msa0138870:exon |
| GGTTGAGGAAGGCAAGGCAA+AGG | 0.481278 | 1_3:+72104483 | Msa0138870:CDS |
| TTTGAAGCGAAATTGGTTGA+AGG | 0.487809 | 1_3:+72104385 | Msa0138870:CDS |
| GGGTATAACTATAGTATAGT+TGG | 0.489142 | 1_3:+72104325 | Msa0138870:CDS |
| ATAGTATAGTTGGAGGAGTA+GGG | 0.491450 | 1_3:+72104335 | Msa0138870:CDS |
| TCTCACAGTTCAATAGCAAA+AGG | 0.508434 | 1_3:-72104686 | None:intergenic |
| AGATGCTAAGCCAATTGAAA+AGG | 0.515464 | 1_3:+72104459 | Msa0138870:CDS |
| GCCAATTGAAAAGGAGGTTG+AGG | 0.520188 | 1_3:+72104468 | Msa0138870:CDS |
| GGCCAAAACATAACCCTCAA+TGG | 0.521409 | 1_3:-72104524 | None:intergenic |
| GTCGAGGGAAATGGTGGTGC+CGG | 0.524142 | 1_3:+72104013 | Msa0138870:CDS |
| GGCACCACCATTTCCCTCGA+CGG | 0.527211 | 1_3:-72104011 | None:intergenic |
| AGTAGGAAGACTTGGACACT+TGG | 0.530837 | 1_3:-72104573 | None:intergenic |
| AGTGAGCTTCTTGACGGTGC+CGG | 0.531057 | 1_3:-72104032 | None:intergenic |
| CAAGAAGCTCACTTTCGTTG+AGG | 0.534631 | 1_3:+72104042 | Msa0138870:CDS |
| AGACTTGGACACTTGGAGGA+TGG | 0.543020 | 1_3:-72104566 | None:intergenic |
| GTTGAGGAAGGCAAGGCAAA+GGG | 0.544771 | 1_3:+72104484 | Msa0138870:CDS |
| ATGACGATAGTAGGAAGACT+TGG | 0.552149 | 1_3:-72104581 | None:intergenic |
| AAATTGGTTGAAGGTCCAAA+TGG | 0.568255 | 1_3:+72104394 | Msa0138870:CDS |
| GCAATTGATGAAGCAAACTT+GGG | 0.569895 | 1_3:+72104304 | Msa0138870:CDS |
| AGGAAGACTTGGACACTTGG+AGG | 0.583414 | 1_3:-72104570 | None:intergenic |
| TATAACTATAGTATAGTTGG+AGG | 0.584231 | 1_3:+72104328 | Msa0138870:CDS |
| AGCAGGAGCAACTGTAGAGG+TGG | 0.585421 | 1_3:-72103912 | None:intergenic |
| AAATGAACACTTTATTACAA+CGG | 0.587582 | 1_3:-72104653 | None:intergenic |
| CTTAGCAGGAGCAACTGTAG+AGG | 0.591469 | 1_3:-72103915 | None:intergenic |
| TGCTAAGCCAATTGAAAAGG+AGG | 0.591628 | 1_3:+72104462 | Msa0138870:CDS |
| ACCGTTAAATATCAAACCAA+AGG | 0.596206 | 1_3:+72104436 | Msa0138870:CDS |
| AGGAGTAGGGTTGCCAGACA+CGG | 0.598102 | 1_3:+72104348 | Msa0138870:CDS |
| TGGTTGAAGGTCCAAATGGA+GGG | 0.601542 | 1_3:+72104398 | Msa0138870:CDS |
| TTGGTTGAAGGTCCAAATGG+AGG | 0.609517 | 1_3:+72104397 | Msa0138870:CDS |
| ATTGAAAAGGAGGTTGAGGA+AGG | 0.616285 | 1_3:+72104472 | Msa0138870:CDS |
| AAAGGAGGTTGAGGAAGGCA+AGG | 0.629508 | 1_3:+72104477 | Msa0138870:CDS |
| CAAATTATCAAACCAAACAT+GGG | 0.651382 | 1_3:+72103866 | Msa0138870:exon |
| AAGAGTGTTGAAACCGTCGA+GGG | 0.665491 | 1_3:+72103998 | Msa0138870:CDS |
| CAAGAGTGTTGAAACCGTCG+AGG | 0.677120 | 1_3:+72103997 | Msa0138870:CDS |
| GAAACCGTCGAGGGAAATGG+TGG | 0.692349 | 1_3:+72104007 | Msa0138870:CDS |
| CAATTGATGAAGCAAACTTG+GGG | 0.696928 | 1_3:+72104305 | Msa0138870:CDS |
| TAGATATGTATGTTAGTGTG+TGG | 0.718892 | 1_3:-72103793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAACAAATATACTATT+TGG | - | chr1_3:72104772-72104791 | None:intergenic | 15.0% |
| !! | TTAACAACAAATATACTATT+TGG | - | chr1_3:72104772-72104791 | None:intergenic | 15.0% |
| !! | ATCACAACTACTATTTATAT+AGG | - | chr1_3:72104213-72104232 | None:intergenic | 20.0% |
| !! | AAATGAACACTTTATTACAA+CGG | - | chr1_3:72104656-72104675 | None:intergenic | 20.0% |
| !! | ATCACAACTACTATTTATAT+AGG | - | chr1_3:72104213-72104232 | None:intergenic | 20.0% |
| !! | AAATGAACACTTTATTACAA+CGG | - | chr1_3:72104656-72104675 | None:intergenic | 20.0% |
| ! | CAAATTATCAAACCAAACAT+GGG | + | chr1_3:72103866-72103885 | Msa0138870:exon | 25.0% |
| ! | AAAGATAAGTTAAGAGTGAT+TGG | - | chr1_3:72104134-72104153 | None:intergenic | 25.0% |
| ! | TATAACTATAGTATAGTTGG+AGG | + | chr1_3:72104328-72104347 | Msa0138870:CDS | 25.0% |
| !!! | TCCTTTGGTTTGATATTTAA+CGG | - | chr1_3:72104440-72104459 | None:intergenic | 25.0% |
| ! | CAAATTATCAAACCAAACAT+GGG | + | chr1_3:72103866-72103885 | Msa0138870:exon | 25.0% |
| ! | AAAGATAAGTTAAGAGTGAT+TGG | - | chr1_3:72104134-72104153 | None:intergenic | 25.0% |
| ! | TATAACTATAGTATAGTTGG+AGG | + | chr1_3:72104328-72104347 | Msa0138870:CDS | 25.0% |
| !!! | TCCTTTGGTTTGATATTTAA+CGG | - | chr1_3:72104440-72104459 | None:intergenic | 25.0% |
| !! | TTTGGTGATGAAGTTCTAAT+GGG | - | chr1_3:72103850-72103869 | None:intergenic | 30.0% |
| !! | ATTTGGTGATGAAGTTCTAA+TGG | - | chr1_3:72103851-72103870 | None:intergenic | 30.0% |
| !! | CCATGTTTGGTTTGATAATT+TGG | - | chr1_3:72103868-72103887 | None:intergenic | 30.0% |
| CCAAATTATCAAACCAAACA+TGG | + | chr1_3:72103865-72103884 | Msa0138870:exon | 30.0% | |
| !!! | ATTGGAGAAGTTTTAAACAC+GGG | - | chr1_3:72104116-72104135 | None:intergenic | 30.0% |
| !!! | GATTGGAGAAGTTTTAAACA+CGG | - | chr1_3:72104117-72104136 | None:intergenic | 30.0% |
| CTTCATCAATTGCATCAATT+TGG | - | chr1_3:72104297-72104316 | None:intergenic | 30.0% | |
| GGGTATAACTATAGTATAGT+TGG | + | chr1_3:72104325-72104344 | Msa0138870:CDS | 30.0% | |
| ! | GATATCATTTGAAGCGAAAT+TGG | + | chr1_3:72104378-72104397 | Msa0138870:CDS | 30.0% |
| ACCGTTAAATATCAAACCAA+AGG | + | chr1_3:72104436-72104455 | Msa0138870:CDS | 30.0% | |
| !! | GGATTAGTTGTAATTAGGAT+TGG | - | chr1_3:72104548-72104567 | None:intergenic | 30.0% |
| !! | AGGATGGATTAGTTGTAATT+AGG | - | chr1_3:72104553-72104572 | None:intergenic | 30.0% |
| TCATGTTTAATGACGATAGT+AGG | - | chr1_3:72104593-72104612 | None:intergenic | 30.0% | |
| !! | TTTGGTGATGAAGTTCTAAT+GGG | - | chr1_3:72103850-72103869 | None:intergenic | 30.0% |
| !! | ATTTGGTGATGAAGTTCTAA+TGG | - | chr1_3:72103851-72103870 | None:intergenic | 30.0% |
| !! | CCATGTTTGGTTTGATAATT+TGG | - | chr1_3:72103868-72103887 | None:intergenic | 30.0% |
| CCAAATTATCAAACCAAACA+TGG | + | chr1_3:72103865-72103884 | Msa0138870:exon | 30.0% | |
| !!! | ATTGGAGAAGTTTTAAACAC+GGG | - | chr1_3:72104116-72104135 | None:intergenic | 30.0% |
| !!! | GATTGGAGAAGTTTTAAACA+CGG | - | chr1_3:72104117-72104136 | None:intergenic | 30.0% |
| CTTCATCAATTGCATCAATT+TGG | - | chr1_3:72104297-72104316 | None:intergenic | 30.0% | |
| GGGTATAACTATAGTATAGT+TGG | + | chr1_3:72104325-72104344 | Msa0138870:CDS | 30.0% | |
| ! | GATATCATTTGAAGCGAAAT+TGG | + | chr1_3:72104378-72104397 | Msa0138870:CDS | 30.0% |
| ACCGTTAAATATCAAACCAA+AGG | + | chr1_3:72104436-72104455 | Msa0138870:CDS | 30.0% | |
| !! | GGATTAGTTGTAATTAGGAT+TGG | - | chr1_3:72104548-72104567 | None:intergenic | 30.0% |
| !! | AGGATGGATTAGTTGTAATT+AGG | - | chr1_3:72104553-72104572 | None:intergenic | 30.0% |
| TCATGTTTAATGACGATAGT+AGG | - | chr1_3:72104593-72104612 | None:intergenic | 30.0% | |
| AATGTGAATACACCCATGTT+TGG | - | chr1_3:72103881-72103900 | None:intergenic | 35.0% | |
| !! | AATTTGGTGCAACACGTATA+AGG | - | chr1_3:72104281-72104300 | None:intergenic | 35.0% |
| TGCAATTGATGAAGCAAACT+TGG | + | chr1_3:72104303-72104322 | Msa0138870:CDS | 35.0% | |
| GCAATTGATGAAGCAAACTT+GGG | + | chr1_3:72104304-72104323 | Msa0138870:CDS | 35.0% | |
| CAATTGATGAAGCAAACTTG+GGG | + | chr1_3:72104305-72104324 | Msa0138870:CDS | 35.0% | |
| TATAGTATAGTTGGAGGAGT+AGG | + | chr1_3:72104334-72104353 | Msa0138870:CDS | 35.0% | |
| ATAGTATAGTTGGAGGAGTA+GGG | + | chr1_3:72104335-72104354 | Msa0138870:CDS | 35.0% | |
| ! | TTTGAAGCGAAATTGGTTGA+AGG | + | chr1_3:72104385-72104404 | Msa0138870:CDS | 35.0% |
| AAATTGGTTGAAGGTCCAAA+TGG | + | chr1_3:72104394-72104413 | Msa0138870:CDS | 35.0% | |
| AGATGCTAAGCCAATTGAAA+AGG | + | chr1_3:72104459-72104478 | Msa0138870:CDS | 35.0% | |
| TCTCACAGTTCAATAGCAAA+AGG | - | chr1_3:72104689-72104708 | None:intergenic | 35.0% | |
| AATGTGAATACACCCATGTT+TGG | - | chr1_3:72103881-72103900 | None:intergenic | 35.0% | |
| !! | AATTTGGTGCAACACGTATA+AGG | - | chr1_3:72104281-72104300 | None:intergenic | 35.0% |
| TGCAATTGATGAAGCAAACT+TGG | + | chr1_3:72104303-72104322 | Msa0138870:CDS | 35.0% | |
| GCAATTGATGAAGCAAACTT+GGG | + | chr1_3:72104304-72104323 | Msa0138870:CDS | 35.0% | |
| CAATTGATGAAGCAAACTTG+GGG | + | chr1_3:72104305-72104324 | Msa0138870:CDS | 35.0% | |
| TATAGTATAGTTGGAGGAGT+AGG | + | chr1_3:72104334-72104353 | Msa0138870:CDS | 35.0% | |
| ATAGTATAGTTGGAGGAGTA+GGG | + | chr1_3:72104335-72104354 | Msa0138870:CDS | 35.0% | |
| ! | TTTGAAGCGAAATTGGTTGA+AGG | + | chr1_3:72104385-72104404 | Msa0138870:CDS | 35.0% |
| AAATTGGTTGAAGGTCCAAA+TGG | + | chr1_3:72104394-72104413 | Msa0138870:CDS | 35.0% | |
| AGATGCTAAGCCAATTGAAA+AGG | + | chr1_3:72104459-72104478 | Msa0138870:CDS | 35.0% | |
| TCTCACAGTTCAATAGCAAA+AGG | - | chr1_3:72104689-72104708 | None:intergenic | 35.0% | |
| ! | AGAGCTTTGTAAAGCTTAGC+AGG | - | chr1_3:72103932-72103951 | None:intergenic | 40.0% |
| ! | TGATGGCATCAACAGCTTTT+GGG | - | chr1_3:72103979-72103998 | None:intergenic | 40.0% |
| !! | TTGATGGCATCAACAGCTTT+TGG | - | chr1_3:72103980-72103999 | None:intergenic | 40.0% |
| AACGAAAGTGAGCTTCTTGA+CGG | - | chr1_3:72104041-72104060 | None:intergenic | 40.0% | |
| AAGAAGCTCACTTTCGTTGA+GGG | + | chr1_3:72104043-72104062 | Msa0138870:CDS | 40.0% | |
| TCACCAACATATATGTCTGC+AGG | + | chr1_3:72104247-72104266 | Msa0138870:intron | 40.0% | |
| ! | GATATCTTTTCAACCGTGTC+TGG | - | chr1_3:72104364-72104383 | None:intergenic | 40.0% |
| ! | AATTGGCTTAGCATCTCCTT+TGG | - | chr1_3:72104455-72104474 | None:intergenic | 40.0% |
| TGCTAAGCCAATTGAAAAGG+AGG | + | chr1_3:72104462-72104481 | Msa0138870:CDS | 40.0% | |
| ! | TCCTCAACCTCCTTTTCAAT+TGG | - | chr1_3:72104472-72104491 | None:intergenic | 40.0% |
| ATTGAAAAGGAGGTTGAGGA+AGG | + | chr1_3:72104472-72104491 | Msa0138870:CDS | 40.0% | |
| ! | AAAGGGTGATGCTCTTTTCA+AGG | + | chr1_3:72104501-72104520 | Msa0138870:CDS | 40.0% |
| ATGACGATAGTAGGAAGACT+TGG | - | chr1_3:72104584-72104603 | None:intergenic | 40.0% | |
| ! | AGAGCTTTGTAAAGCTTAGC+AGG | - | chr1_3:72103932-72103951 | None:intergenic | 40.0% |
| ! | TGATGGCATCAACAGCTTTT+GGG | - | chr1_3:72103979-72103998 | None:intergenic | 40.0% |
| !! | TTGATGGCATCAACAGCTTT+TGG | - | chr1_3:72103980-72103999 | None:intergenic | 40.0% |
| AACGAAAGTGAGCTTCTTGA+CGG | - | chr1_3:72104041-72104060 | None:intergenic | 40.0% | |
| AAGAAGCTCACTTTCGTTGA+GGG | + | chr1_3:72104043-72104062 | Msa0138870:CDS | 40.0% | |
| TCACCAACATATATGTCTGC+AGG | + | chr1_3:72104247-72104266 | Msa0138870:intron | 40.0% | |
| ! | GATATCTTTTCAACCGTGTC+TGG | - | chr1_3:72104364-72104383 | None:intergenic | 40.0% |
| ! | AATTGGCTTAGCATCTCCTT+TGG | - | chr1_3:72104455-72104474 | None:intergenic | 40.0% |
| TGCTAAGCCAATTGAAAAGG+AGG | + | chr1_3:72104462-72104481 | Msa0138870:CDS | 40.0% | |
| ! | TCCTCAACCTCCTTTTCAAT+TGG | - | chr1_3:72104472-72104491 | None:intergenic | 40.0% |
| ATTGAAAAGGAGGTTGAGGA+AGG | + | chr1_3:72104472-72104491 | Msa0138870:CDS | 40.0% | |
| ! | AAAGGGTGATGCTCTTTTCA+AGG | + | chr1_3:72104501-72104520 | Msa0138870:CDS | 40.0% |
| ATGACGATAGTAGGAAGACT+TGG | - | chr1_3:72104584-72104603 | None:intergenic | 40.0% | |
| GACGGTTTCAACACTCTTGA+TGG | - | chr1_3:72103996-72104015 | None:intergenic | 45.0% | |
| !! | AAGAGTGTTGAAACCGTCGA+GGG | + | chr1_3:72103998-72104017 | Msa0138870:CDS | 45.0% |
| CAAGAAGCTCACTTTCGTTG+AGG | + | chr1_3:72104042-72104061 | Msa0138870:CDS | 45.0% | |
| CCTCCTGCAGACATATATGT+TGG | - | chr1_3:72104253-72104272 | None:intergenic | 45.0% | |
| CCAACATATATGTCTGCAGG+AGG | + | chr1_3:72104250-72104269 | Msa0138870:intron | 45.0% | |
| TTGGTTGAAGGTCCAAATGG+AGG | + | chr1_3:72104397-72104416 | Msa0138870:CDS | 45.0% | |
| TGGTTGAAGGTCCAAATGGA+GGG | + | chr1_3:72104398-72104417 | Msa0138870:CDS | 45.0% | |
| GTCCAAATGGAGGGTCTATT+GGG | + | chr1_3:72104407-72104426 | Msa0138870:CDS | 45.0% | |
| TTCCCAATAGACCCTCCATT+TGG | - | chr1_3:72104412-72104431 | None:intergenic | 45.0% | |
| GCCAATTGAAAAGGAGGTTG+AGG | + | chr1_3:72104468-72104487 | Msa0138870:CDS | 45.0% | |
| !! | TGCTCTTTTCAAGGCCATTG+AGG | + | chr1_3:72104510-72104529 | Msa0138870:CDS | 45.0% |
| !! | GCTCTTTTCAAGGCCATTGA+GGG | + | chr1_3:72104511-72104530 | Msa0138870:CDS | 45.0% |
| ! | GGCCATTGAGGGTTATGTTT+TGG | + | chr1_3:72104522-72104541 | Msa0138870:CDS | 45.0% |
| GGCCAAAACATAACCCTCAA+TGG | - | chr1_3:72104527-72104546 | None:intergenic | 45.0% | |
| AGTAGGAAGACTTGGACACT+TGG | - | chr1_3:72104576-72104595 | None:intergenic | 45.0% | |
| GACGGTTTCAACACTCTTGA+TGG | - | chr1_3:72103996-72104015 | None:intergenic | 45.0% | |
| !! | AAGAGTGTTGAAACCGTCGA+GGG | + | chr1_3:72103998-72104017 | Msa0138870:CDS | 45.0% |
| CAAGAAGCTCACTTTCGTTG+AGG | + | chr1_3:72104042-72104061 | Msa0138870:CDS | 45.0% | |
| CCTCCTGCAGACATATATGT+TGG | - | chr1_3:72104253-72104272 | None:intergenic | 45.0% | |
| CCAACATATATGTCTGCAGG+AGG | + | chr1_3:72104250-72104269 | Msa0138870:intron | 45.0% | |
| TTGGTTGAAGGTCCAAATGG+AGG | + | chr1_3:72104397-72104416 | Msa0138870:CDS | 45.0% | |
| TGGTTGAAGGTCCAAATGGA+GGG | + | chr1_3:72104398-72104417 | Msa0138870:CDS | 45.0% | |
| GTCCAAATGGAGGGTCTATT+GGG | + | chr1_3:72104407-72104426 | Msa0138870:CDS | 45.0% | |
| TTCCCAATAGACCCTCCATT+TGG | - | chr1_3:72104412-72104431 | None:intergenic | 45.0% | |
| GCCAATTGAAAAGGAGGTTG+AGG | + | chr1_3:72104468-72104487 | Msa0138870:CDS | 45.0% | |
| !! | TGCTCTTTTCAAGGCCATTG+AGG | + | chr1_3:72104510-72104529 | Msa0138870:CDS | 45.0% |
| !! | GCTCTTTTCAAGGCCATTGA+GGG | + | chr1_3:72104511-72104530 | Msa0138870:CDS | 45.0% |
| ! | GGCCATTGAGGGTTATGTTT+TGG | + | chr1_3:72104522-72104541 | Msa0138870:CDS | 45.0% |
| GGCCAAAACATAACCCTCAA+TGG | - | chr1_3:72104527-72104546 | None:intergenic | 45.0% | |
| AGTAGGAAGACTTGGACACT+TGG | - | chr1_3:72104576-72104595 | None:intergenic | 45.0% | |
| CTTAGCAGGAGCAACTGTAG+AGG | - | chr1_3:72103918-72103937 | None:intergenic | 50.0% | |
| !! | CAAGAGTGTTGAAACCGTCG+AGG | + | chr1_3:72103997-72104016 | Msa0138870:CDS | 50.0% |
| GTTGAAACCGTCGAGGGAAA+TGG | + | chr1_3:72104004-72104023 | Msa0138870:CDS | 50.0% | |
| GGTCCAAATGGAGGGTCTAT+TGG | + | chr1_3:72104406-72104425 | Msa0138870:CDS | 50.0% | |
| AAAGGAGGTTGAGGAAGGCA+AGG | + | chr1_3:72104477-72104496 | Msa0138870:CDS | 50.0% | |
| GTTGAGGAAGGCAAGGCAAA+GGG | + | chr1_3:72104484-72104503 | Msa0138870:CDS | 50.0% | |
| AGACTTGGACACTTGGAGGA+TGG | - | chr1_3:72104569-72104588 | None:intergenic | 50.0% | |
| AGGAAGACTTGGACACTTGG+AGG | - | chr1_3:72104573-72104592 | None:intergenic | 50.0% | |
| CTTAGCAGGAGCAACTGTAG+AGG | - | chr1_3:72103918-72103937 | None:intergenic | 50.0% | |
| !! | CAAGAGTGTTGAAACCGTCG+AGG | + | chr1_3:72103997-72104016 | Msa0138870:CDS | 50.0% |
| GTTGAAACCGTCGAGGGAAA+TGG | + | chr1_3:72104004-72104023 | Msa0138870:CDS | 50.0% | |
| GGTCCAAATGGAGGGTCTAT+TGG | + | chr1_3:72104406-72104425 | Msa0138870:CDS | 50.0% | |
| AAAGGAGGTTGAGGAAGGCA+AGG | + | chr1_3:72104477-72104496 | Msa0138870:CDS | 50.0% | |
| GTTGAGGAAGGCAAGGCAAA+GGG | + | chr1_3:72104484-72104503 | Msa0138870:CDS | 50.0% | |
| AGACTTGGACACTTGGAGGA+TGG | - | chr1_3:72104569-72104588 | None:intergenic | 50.0% | |
| AGGAAGACTTGGACACTTGG+AGG | - | chr1_3:72104573-72104592 | None:intergenic | 50.0% | |
| AGCAGGAGCAACTGTAGAGG+TGG | - | chr1_3:72103915-72103934 | None:intergenic | 55.0% | |
| GAAACCGTCGAGGGAAATGG+TGG | + | chr1_3:72104007-72104026 | Msa0138870:CDS | 55.0% | |
| AGTGAGCTTCTTGACGGTGC+CGG | - | chr1_3:72104035-72104054 | None:intergenic | 55.0% | |
| AGGAGTAGGGTTGCCAGACA+CGG | + | chr1_3:72104348-72104367 | Msa0138870:CDS | 55.0% | |
| GGTTGAGGAAGGCAAGGCAA+AGG | + | chr1_3:72104483-72104502 | Msa0138870:CDS | 55.0% | |
| AGCAGGAGCAACTGTAGAGG+TGG | - | chr1_3:72103915-72103934 | None:intergenic | 55.0% | |
| GAAACCGTCGAGGGAAATGG+TGG | + | chr1_3:72104007-72104026 | Msa0138870:CDS | 55.0% | |
| AGTGAGCTTCTTGACGGTGC+CGG | - | chr1_3:72104035-72104054 | None:intergenic | 55.0% | |
| AGGAGTAGGGTTGCCAGACA+CGG | + | chr1_3:72104348-72104367 | Msa0138870:CDS | 55.0% | |
| GGTTGAGGAAGGCAAGGCAA+AGG | + | chr1_3:72104483-72104502 | Msa0138870:CDS | 55.0% | |
| GGCACCACCATTTCCCTCGA+CGG | - | chr1_3:72104014-72104033 | None:intergenic | 60.0% | |
| ! | GTCGAGGGAAATGGTGGTGC+CGG | + | chr1_3:72104013-72104032 | Msa0138870:CDS | 60.0% |
| GGCACCACCATTTCCCTCGA+CGG | - | chr1_3:72104014-72104033 | None:intergenic | 60.0% | |
| ! | GTCGAGGGAAATGGTGGTGC+CGG | + | chr1_3:72104013-72104032 | Msa0138870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 72103795 | 72104841 | 72103795 | ID=Msa0138870;Name=Msa0138870 |
| chr1_3 | mRNA | 72103795 | 72104841 | 72103795 | ID=Msa0138870-mRNA-1;Parent=Msa0138870;Name=Msa0138870-mRNA-1;_AED=0.33;_eAED=0.33;_QI=89|1|1|1|1|1|2|277|158 |
| chr1_3 | exon | 72103795 | 72104064 | 72103795 | ID=Msa0138870-mRNA-1:exon:25144;Parent=Msa0138870-mRNA-1 |
| chr1_3 | exon | 72104269 | 72104841 | 72104269 | ID=Msa0138870-mRNA-1:exon:25145;Parent=Msa0138870-mRNA-1 |
| chr1_3 | five_prime_UTR | 72103795 | 72103883 | 72103795 | ID=Msa0138870-mRNA-1:five_prime_utr;Parent=Msa0138870-mRNA-1 |
| chr1_3 | CDS | 72103884 | 72104064 | 72103884 | ID=Msa0138870-mRNA-1:cds;Parent=Msa0138870-mRNA-1 |
| chr1_3 | CDS | 72104269 | 72104564 | 72104269 | ID=Msa0138870-mRNA-1:cds;Parent=Msa0138870-mRNA-1 |
| chr1_3 | three_prime_UTR | 72104565 | 72104841 | 72104565 | ID=Msa0138870-mRNA-1:three_prime_utr;Parent=Msa0138870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
