AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978980 MtrunA17_Chr6g0457801 97.794 272 6 0 1 272 4 275 0.0 552
Msa0978980 MtrunA17_Chr6g0457821 81.091 275 49 1 1 272 4 278 1.69e-169 469
Msa0978980 MtrunA17_Chr6g0457841 89.947 189 19 0 82 270 1 189 1.98e-126 357
Msa0978980 MtrunA17_Chr6g0457831 79.012 81 14 1 1 78 4 84 1.15e-39 133
Msa0978980 MtrunA17_Chr6g0457811 71.053 76 19 1 1 73 4 79 7.70e-32 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978980 AT3G02580.1 70.111 271 79 1 2 270 4 274 4.05e-144 405
Msa0978980 AT3G02590.1 66.914 269 87 1 4 270 7 275 2.18e-136 386
Msa0978980 AT3G02590.2 70.681 191 54 1 82 270 1 191 5.23e-99 288

Find 68 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTACTTTACTTCATTTC+TGG 0.069797 6_4:+15223922 Msa0978980:CDS
TGGTTAAATGTTATCTTTAC+TGG 0.185581 6_4:+15227086 Msa0978980:three_prime_UTR
ACTTCATTTCTGGTTTCTTT+TGG 0.223397 6_4:+15223932 Msa0978980:CDS
CGGAAAATTATGGCCTGTTA+TGG 0.256109 6_4:+15226937 Msa0978980:CDS
TTGTGGAGTTTGGTATTTAT+TGG 0.257333 6_4:+15225538 Msa0978980:CDS
ATTGCATTCACGGAAAATTA+TGG 0.261663 6_4:+15226927 Msa0978980:CDS
CGGTTATTTAGCGATGTATA+TGG 0.295041 6_4:+15225512 Msa0978980:CDS
TGTGGAGTTTGGTATTTATT+GGG 0.301537 6_4:+15225539 Msa0978980:CDS
AACCGATATTTGTAAGAATA+TGG 0.304421 6_4:-15225373 None:intergenic
GCACCAAGTGTGCAATAAAA+TGG 0.308135 6_4:-15226865 None:intergenic
ACGACATATCGACATAACTA+TGG 0.318548 6_4:+15226986 Msa0978980:CDS
ATTGCTGTTGAGCATAAAAT+TGG 0.327083 6_4:+15227109 Msa0978980:three_prime_UTR
TCTTATTCATTGAAGGTGTT+TGG 0.327394 6_4:+15226888 Msa0978980:CDS
TATATGGTTATTGTGGAGTT+TGG 0.347055 6_4:+15225528 Msa0978980:CDS
TCCGAGTACTTGACAGAAAT+CGG 0.355089 6_4:+15225438 Msa0978980:CDS
AGCCATATTCTTACAAATAT+CGG 0.357919 6_4:+15225371 Msa0978980:CDS
AATACTCTCTCCCCGTTTGC+TGG 0.366450 6_4:+15225636 Msa0978980:CDS
AATATTCATGATTGCATTCA+CGG 0.374123 6_4:+15226917 Msa0978980:CDS
CAACCAACATTATTTAATCT+AGG 0.377005 6_4:-15225477 None:intergenic
TGTAGTTACGAAGCCATGTT+TGG 0.394197 6_4:-15223891 None:intergenic
CACTTTGCCTACGTCTTGCT+CGG 0.395239 6_4:-15227056 None:intergenic
TGGTAACCAGCTCCCATAAC+AGG 0.414380 6_4:-15226950 None:intergenic
GTATGGATGGATTGGATGTT+CGG 0.440878 6_4:+15227019 Msa0978980:CDS
GGAAAATTATGGCCTGTTAT+GGG 0.443452 6_4:+15226938 Msa0978980:CDS
TTGGTGCTCTTATTCATTGA+AGG 0.445284 6_4:+15226881 Msa0978980:CDS
TGATGAACTCACCAGCAAAC+GGG 0.453022 6_4:-15225647 None:intergenic
TTATGGCCTGTTATGGGAGC+TGG 0.456299 6_4:+15226944 Msa0978980:CDS
CGCAATGTTTATCTCCCTAA+AGG 0.464782 6_4:+15223979 Msa0978980:CDS
TTTCCAACAGTAAATGTAGA+AGG 0.467553 6_4:-15223956 None:intergenic
CTAGATTAAATAATGTTGGT+TGG 0.478213 6_4:+15225478 Msa0978980:CDS
TTGATGAACTCACCAGCAAA+CGG 0.488354 6_4:-15225648 None:intergenic
AGCGATGTATATGGTTATTG+TGG 0.500046 6_4:+15225521 Msa0978980:CDS
TTTCCTAGATTAAATAATGT+TGG 0.500472 6_4:+15225474 Msa0978980:CDS
TCAAGCATTACCACATAGCC+TGG 0.508235 6_4:+15226823 Msa0978980:CDS
GCATGAAGATATTTGTAAAG+TGG 0.510724 6_4:-15225588 None:intergenic
GGTCCTTCTACATTTACTGT+TGG 0.512202 6_4:+15223953 Msa0978980:CDS
TTGCTTTGAAAGCCATGCAT+TGG 0.517901 6_4:+15225394 Msa0978980:CDS
CATCGCTAAATAACCGATGT+AGG 0.521223 6_4:-15225505 None:intergenic
ACTTTGCCTACGTCTTGCTC+GGG 0.523211 6_4:-15227055 None:intergenic
AATGCAATCATGAATATTTG+CGG 0.526336 6_4:-15226912 None:intergenic
GTTTGGAAGAACCTTGGAAG+TGG 0.528851 6_4:-15223874 None:intergenic
AGCCATGTTTGGAAGAACCT+TGG 0.540963 6_4:-15223880 None:intergenic
TTCCAAGGTTCTTCCAAACA+TGG 0.547286 6_4:+15223878 Msa0978980:CDS
CGTAGGCAAAGTGATGTGAT+TGG 0.548883 6_4:+15227066 Msa0978980:exon
CGACATATCGACATAACTAT+GGG 0.549179 6_4:+15226987 Msa0978980:CDS
ATTACACCGTATGGATGGAT+TGG 0.549465 6_4:+15227011 Msa0978980:CDS
ACTATGGGCATTACACCGTA+TGG 0.549982 6_4:+15227002 Msa0978980:CDS
GTCAAGTACTCGGAAAGAGT+TGG 0.550740 6_4:-15225429 None:intergenic
GCCGATTTCTGTCAAGTACT+CGG 0.552304 6_4:-15225439 None:intergenic
AGTACTTGACAGAAATCGGC+TGG 0.557300 6_4:+15225442 Msa0978980:CDS
TGGCTTCGTAACTACATTGG+TGG 0.561043 6_4:+15223898 Msa0978980:CDS
TGTCTTCAATGAAGAGAGTA+CGG 0.567028 6_4:-15223795 None:intergenic
TGGGCATTACACCGTATGGA+TGG 0.573336 6_4:+15227006 Msa0978980:CDS
AAGTGTGCAATAAAATGGAC+TGG 0.574144 6_4:-15226860 None:intergenic
CTGGAACAATAAACAAAGCC+AGG 0.574481 6_4:-15226841 None:intergenic
TAAGAATATGGCTCTACGTG+AGG 0.584180 6_4:-15225361 None:intergenic
GCTTGAAGTATTCCATCAAG+AGG 0.592313 6_4:-15226806 None:intergenic
ATAAACAAAGCCAGGCTATG+TGG 0.593129 6_4:-15226833 None:intergenic
TTTGGAAGAACCTTGGAAGT+GGG 0.595848 6_4:-15223873 None:intergenic
ACATGGCTTCGTAACTACAT+TGG 0.599600 6_4:+15223895 Msa0978980:CDS
TCGATATGTCGTATGATGAA+TGG 0.602742 6_4:-15226975 None:intergenic
AAGAATATGGCTCTACGTGA+GGG 0.616607 6_4:-15225360 None:intergenic
GTTGGTTGGATTGCCTACAT+CGG 0.630807 6_4:+15225492 Msa0978980:CDS
AAGCAAAGTGTACCAATGCA+TGG 0.633953 6_4:-15225406 None:intergenic
GAACATCCAATCCATCCATA+CGG 0.634908 6_4:-15227017 None:intergenic
ATGTCGTATGATGAATGGTA+TGG 0.646301 6_4:-15226970 None:intergenic
GATGAACTCACCAGCAAACG+GGG 0.648868 6_4:-15225646 None:intergenic
CGCGATCCCGAGCAAGACGT+AGG 0.681471 6_4:+15227049 Msa0978980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATTTTTAATATTTTT+TGG + chr6_4:15224669-15224688 Msa0978980:intron 0.0%
!! CTCAAAAAAAAAAAAAAAAA+GGG - chr6_4:15224010-15224029 None:intergenic 10.0%
!!! TTTTTGTTTTAATTTCAAAT+AGG + chr6_4:15224043-15224062 Msa0978980:intron 10.0%
!!! TTTTTTTTAAATATTTACAC+AGG + chr6_4:15224608-15224627 Msa0978980:intron 10.0%
!!! TAGATTTAAAGTTAAATAAA+TGG + chr6_4:15226309-15226328 Msa0978980:intron 10.0%
!! GCTCAAAAAAAAAAAAAAAA+AGG - chr6_4:15224011-15224030 None:intergenic 15.0%
!!! TAGGTTTTCTTTTTAATATT+TGG + chr6_4:15224062-15224081 Msa0978980:intron 15.0%
!!! CATTTTTTTCAAATTATCAT+CGG - chr6_4:15224253-15224272 None:intergenic 15.0%
!!! ATTTTTGATTTGATATGAAA+TGG + chr6_4:15224395-15224414 Msa0978980:intron 15.0%
!! AAAATACTAAATACTTATAC+AGG + chr6_4:15224542-15224561 Msa0978980:intron 15.0%
!! AAATACTAAATACTTATACA+GGG + chr6_4:15224543-15224562 Msa0978980:intron 15.0%
!! TAACTTTAAATCTAACTTAA+GGG - chr6_4:15226303-15226322 None:intergenic 15.0%
!! TTAACTTTAAATCTAACTTA+AGG - chr6_4:15226304-15226323 None:intergenic 15.0%
!!! TGTGAAAGTTTTAATCTTTT+GGG + chr6_4:15224103-15224122 Msa0978980:intron 20.0%
!!! TTTTGGGTTTAATTTGAAAT+GGG + chr6_4:15224119-15224138 Msa0978980:intron 20.0%
!!! TTGTTTTATCATTTTGCTTT+TGG + chr6_4:15224462-15224481 Msa0978980:intron 20.0%
!! ATAAAATGGTCATTTCAAAA+GGG - chr6_4:15224728-15224747 None:intergenic 20.0%
!! AATAATGCATGAAGATAAAA+TGG - chr6_4:15224742-15224761 None:intergenic 20.0%
!! TTTCAAATTATTAGCTATGT+CGG + chr6_4:15224997-15225016 Msa0978980:intron 20.0%
!! AACAATTAACATCTAACAAT+TGG - chr6_4:15225099-15225118 None:intergenic 20.0%
!! ATTGTTAGATGTTAATTGTT+TGG + chr6_4:15225099-15225118 Msa0978980:intron 20.0%
!! TTTCCTAGATTAAATAATGT+TGG + chr6_4:15225474-15225493 Msa0978980:CDS 20.0%
!!! TGATTAAAGAAAAAAGTACA+CGG + chr6_4:15226185-15226204 Msa0978980:intron 20.0%
!!! TTTTTTTGTTGATAAATCTC+AGG + chr6_4:15226770-15226789 Msa0978980:intron 20.0%
!!! GTGTGAAAGTTTTAATCTTT+TGG + chr6_4:15224102-15224121 Msa0978980:intron 25.0%
!!! CTTTTGGGTTTAATTTGAAA+TGG + chr6_4:15224118-15224137 Msa0978980:intron 25.0%
!! AAGCCACTTATAATTTTCAA+TGG + chr6_4:15224570-15224589 Msa0978980:intron 25.0%
! CAACCATTGAAAATTATAAG+TGG - chr6_4:15224576-15224595 None:intergenic 25.0%
! GATAAAATGGTCATTTCAAA+AGG - chr6_4:15224729-15224748 None:intergenic 25.0%
! ATCTTGTAAAGTTCAAAGAT+GGG - chr6_4:15224783-15224802 None:intergenic 25.0%
! ACAAACAAATAACATACACA+AGG - chr6_4:15225238-15225257 None:intergenic 25.0%
! TTATTTGTTTGTCATTGTCT+CGG + chr6_4:15225246-15225265 Msa0978980:intron 25.0%
! CAAGAAAACAATGTTACAAA+AGG - chr6_4:15225308-15225327 None:intergenic 25.0%
! AGCCATATTCTTACAAATAT+CGG + chr6_4:15225371-15225390 Msa0978980:CDS 25.0%
! AACCGATATTTGTAAGAATA+TGG - chr6_4:15225376-15225395 None:intergenic 25.0%
! CAACCAACATTATTTAATCT+AGG - chr6_4:15225480-15225499 None:intergenic 25.0%
! CTAGATTAAATAATGTTGGT+TGG + chr6_4:15225478-15225497 Msa0978980:CDS 25.0%
! AGATTATTGTTGTGATTTAG+AGG - chr6_4:15225834-15225853 None:intergenic 25.0%
! GTTCATAACCATAAATTCAT+CGG + chr6_4:15225856-15225875 Msa0978980:intron 25.0%
! AAATGGTCTATCTTTCAATA+TGG + chr6_4:15226326-15226345 Msa0978980:intron 25.0%
!!! TTCGGTTTTTAAAACATTGA+AGG - chr6_4:15226560-15226579 None:intergenic 25.0%
! TTAAAAAACCAAACCAGATA+TGG - chr6_4:15226708-15226727 None:intergenic 25.0%
!!! TTGTTTTAATCACAAGATCA+AGG + chr6_4:15226732-15226751 Msa0978980:intron 25.0%
!!! TGTTTTAATCACAAGATCAA+GGG + chr6_4:15226733-15226752 Msa0978980:intron 25.0%
! AATGCAATCATGAATATTTG+CGG - chr6_4:15226915-15226934 None:intergenic 25.0%
! AATATTCATGATTGCATTCA+CGG + chr6_4:15226917-15226936 Msa0978980:CDS 25.0%
! TGGTTAAATGTTATCTTTAC+TGG + chr6_4:15227086-15227105 Msa0978980:three_prime_UTR 25.0%
! TTTCTACAACAGCATTTTGT+TGG + chr6_4:15223822-15223841 Msa0978980:CDS 30.0%
! TTCTACAACAGCATTTTGTT+GGG + chr6_4:15223823-15223842 Msa0978980:CDS 30.0%
!!! TTTGTTACCTCACTTTTTGT+GGG + chr6_4:15223849-15223868 Msa0978980:CDS 30.0%
CTTCTACTTTACTTCATTTC+TGG + chr6_4:15223922-15223941 Msa0978980:CDS 30.0%
!!! ACTTCATTTCTGGTTTCTTT+TGG + chr6_4:15223932-15223951 Msa0978980:CDS 30.0%
TTTCCAACAGTAAATGTAGA+AGG - chr6_4:15223959-15223978 None:intergenic 30.0%
! TTGTGAAAGATGTCATCTTT+TGG + chr6_4:15224494-15224513 Msa0978980:intron 30.0%
TATATATCAGCATGATCAGT+TGG - chr6_4:15224655-15224674 None:intergenic 30.0%
CATCTTGTAAAGTTCAAAGA+TGG - chr6_4:15224784-15224803 None:intergenic 30.0%
!! GACTTATGTTTTTCTAGCAA+TGG + chr6_4:15224809-15224828 Msa0978980:intron 30.0%
TGAACATCTAACAATCTGAT+TGG - chr6_4:15224840-15224859 None:intergenic 30.0%
TTAATTGTTTGGTTACACGT+TGG + chr6_4:15225110-15225129 Msa0978980:intron 30.0%
TAATTGTTTGGTTACACGTT+GGG + chr6_4:15225111-15225130 Msa0978980:intron 30.0%
GTGAAATCAAACATGAACTA+AGG - chr6_4:15225175-15225194 None:intergenic 30.0%
ATCCAAAACACTTTACATTC+TGG + chr6_4:15225209-15225228 Msa0978980:intron 30.0%
!! TACCAGAATGTAAAGTGTTT+TGG - chr6_4:15225214-15225233 None:intergenic 30.0%
TATATGGTTATTGTGGAGTT+TGG + chr6_4:15225528-15225547 Msa0978980:CDS 30.0%
TTGTGGAGTTTGGTATTTAT+TGG + chr6_4:15225538-15225557 Msa0978980:CDS 30.0%
TGTGGAGTTTGGTATTTATT+GGG + chr6_4:15225539-15225558 Msa0978980:CDS 30.0%
GCATGAAGATATTTGTAAAG+TGG - chr6_4:15225591-15225610 None:intergenic 30.0%
ATCATCAAGGATTATCCAAA+CGG - chr6_4:15225757-15225776 None:intergenic 30.0%
ACTCAATAACAGAATCATCA+AGG - chr6_4:15225770-15225789 None:intergenic 30.0%
GTAAGAAACAGAGAAATGAA+GGG + chr6_4:15225911-15225930 Msa0978980:intron 30.0%
TCCTTCTGAATCATATATCA+TGG + chr6_4:15226075-15226094 Msa0978980:intron 30.0%
TCCATGATATATGATTCAGA+AGG - chr6_4:15226079-15226098 None:intergenic 30.0%
GTGATTAGTACATAAGTTCA+AGG + chr6_4:15226222-15226241 Msa0978980:intron 30.0%
ATTAGTACATAAGTTCAAGG+AGG + chr6_4:15226225-15226244 Msa0978980:intron 30.0%
TTAGTACATAAGTTCAAGGA+GGG + chr6_4:15226226-15226245 Msa0978980:intron 30.0%
! TTGTTGATAAATCTCAGGTT+TGG + chr6_4:15226775-15226794 Msa0978980:intron 30.0%
!! TCTTATTCATTGAAGGTGTT+TGG + chr6_4:15226888-15226907 Msa0978980:CDS 30.0%
ATTGCATTCACGGAAAATTA+TGG + chr6_4:15226927-15226946 Msa0978980:CDS 30.0%
! ATTGCTGTTGAGCATAAAAT+TGG + chr6_4:15227109-15227128 Msa0978980:three_prime_UTR 30.0%
TGTCTTCAATGAAGAGAGTA+CGG - chr6_4:15223798-15223817 None:intergenic 35.0%
!!! CTTTGTTACCTCACTTTTTG+TGG + chr6_4:15223848-15223867 Msa0978980:CDS 35.0%
!! AAAAAAGGGTGTCACCTTTA+GGG - chr6_4:15223996-15224015 None:intergenic 35.0%
!! AAAAAAAGGGTGTCACCTTT+AGG - chr6_4:15223997-15224016 None:intergenic 35.0%
GTCTGAGAGATATTTAGTCT+TGG + chr6_4:15224315-15224334 Msa0978980:intron 35.0%
!! TGTATTGATTTGAGAGTCCT+AGG + chr6_4:15224875-15224894 Msa0978980:intron 35.0%
ATGAAACACAGATACAGACA+CGG - chr6_4:15225052-15225071 None:intergenic 35.0%
AAAACGCAATGTACATCTCA+GGG + chr6_4:15225134-15225153 Msa0978980:intron 35.0%
AACATGAACTAAGGCGATTT+CGG - chr6_4:15225166-15225185 None:intergenic 35.0%
CGGTTATTTAGCGATGTATA+TGG + chr6_4:15225512-15225531 Msa0978980:CDS 35.0%
AGCGATGTATATGGTTATTG+TGG + chr6_4:15225521-15225540 Msa0978980:CDS 35.0%
TCATCAAGGATTATCCAAAC+GGG - chr6_4:15225756-15225775 None:intergenic 35.0%
GTTGTGAACCGATGAATTTA+TGG - chr6_4:15225867-15225886 None:intergenic 35.0%
GGTTCACAACATTAGTGAAA+CGG + chr6_4:15225877-15225896 Msa0978980:intron 35.0%
! ATTTCTCTGTTTCTTACGTG+TGG - chr6_4:15225908-15225927 None:intergenic 35.0%
CGTAAGAAACAGAGAAATGA+AGG + chr6_4:15225910-15225929 Msa0978980:intron 35.0%
!!! AAAGTAGTTTTGAGCAGTGT+TGG - chr6_4:15226036-15226055 None:intergenic 35.0%
ACACCAAAGTTAGTGATTCT+AGG + chr6_4:15226111-15226130 Msa0978980:intron 35.0%
TATGTACTAATCACCTACGT+AGG - chr6_4:15226216-15226235 None:intergenic 35.0%
AGCAGACTGAGATAAATCAA+TGG - chr6_4:15226444-15226463 None:intergenic 35.0%
TATGTTGTCGTGTCATACTA+AGG + chr6_4:15226474-15226493 Msa0978980:intron 35.0%
!!! TGTTTTAAAAACCGAACTCG+CGG + chr6_4:15226564-15226583 Msa0978980:intron 35.0%
TTTAATCACAAGATCAAGGG+CGG + chr6_4:15226736-15226755 Msa0978980:intron 35.0%
AAGTGTGCAATAAAATGGAC+TGG - chr6_4:15226863-15226882 None:intergenic 35.0%
! AGTCCATTTTATTGCACACT+TGG + chr6_4:15226862-15226881 Msa0978980:CDS 35.0%
! TTGGTGCTCTTATTCATTGA+AGG + chr6_4:15226881-15226900 Msa0978980:CDS 35.0%
GGAAAATTATGGCCTGTTAT+GGG + chr6_4:15226938-15226957 Msa0978980:CDS 35.0%
ATGTCGTATGATGAATGGTA+TGG - chr6_4:15226973-15226992 None:intergenic 35.0%
TCGATATGTCGTATGATGAA+TGG - chr6_4:15226978-15226997 None:intergenic 35.0%
ACGACATATCGACATAACTA+TGG + chr6_4:15226986-15227005 Msa0978980:CDS 35.0%
CGACATATCGACATAACTAT+GGG + chr6_4:15226987-15227006 Msa0978980:CDS 35.0%
TTTGGAAGAACCTTGGAAGT+GGG - chr6_4:15223876-15223895 None:intergenic 40.0%
TTCCAAGGTTCTTCCAAACA+TGG + chr6_4:15223878-15223897 Msa0978980:CDS 40.0%
TGTAGTTACGAAGCCATGTT+TGG - chr6_4:15223894-15223913 None:intergenic 40.0%
ACATGGCTTCGTAACTACAT+TGG + chr6_4:15223895-15223914 Msa0978980:CDS 40.0%
GGTCCTTCTACATTTACTGT+TGG + chr6_4:15223953-15223972 Msa0978980:CDS 40.0%
CGCAATGTTTATCTCCCTAA+AGG + chr6_4:15223979-15223998 Msa0978980:CDS 40.0%
ACACCAACAATTCTGATCGA+AGG - chr6_4:15224297-15224316 None:intergenic 40.0%
GATCAGTTGGATATCATAGC+TGG - chr6_4:15224642-15224661 None:intergenic 40.0%
GTAAGTACAAGTGTCAGTGT+CGG - chr6_4:15224960-15224979 None:intergenic 40.0%
GAAAACGCAATGTACATCTC+AGG + chr6_4:15225133-15225152 Msa0978980:intron 40.0%
AAACGCAATGTACATCTCAG+GGG + chr6_4:15225135-15225154 Msa0978980:intron 40.0%
GAAATCTGTTGTTGCAGATG+CGG + chr6_4:15225335-15225354 Msa0978980:intron 40.0%
! AAGAATATGGCTCTACGTGA+GGG - chr6_4:15225363-15225382 None:intergenic 40.0%
! TAAGAATATGGCTCTACGTG+AGG - chr6_4:15225364-15225383 None:intergenic 40.0%
!! TTGCTTTGAAAGCCATGCAT+TGG + chr6_4:15225394-15225413 Msa0978980:CDS 40.0%
AAGCAAAGTGTACCAATGCA+TGG - chr6_4:15225409-15225428 None:intergenic 40.0%
TCCGAGTACTTGACAGAAAT+CGG + chr6_4:15225438-15225457 Msa0978980:CDS 40.0%
CATCGCTAAATAACCGATGT+AGG - chr6_4:15225508-15225527 None:intergenic 40.0%
TTGATGAACTCACCAGCAAA+CGG - chr6_4:15225651-15225670 None:intergenic 40.0%
! TCCTTGATAATATCCCCGTT+TGG + chr6_4:15225739-15225758 Msa0978980:intron 40.0%
TCCAAACGGGGATATTATCA+AGG - chr6_4:15225743-15225762 None:intergenic 40.0%
CATCAAGGATTATCCAAACG+GGG - chr6_4:15225755-15225774 None:intergenic 40.0%
CACAACATTAGTGAAACGGA+AGG + chr6_4:15225881-15225900 Msa0978980:intron 40.0%
ACAGAGAAATGAAGGGAAGA+AGG + chr6_4:15225918-15225937 Msa0978980:intron 40.0%
CTGCCTAGAATCACTAACTT+TGG - chr6_4:15226117-15226136 None:intergenic 40.0%
CAAAGTTAGTGATTCTAGGC+AGG + chr6_4:15226115-15226134 Msa0978980:intron 40.0%
AGTCCAATCTCAAAGGTAGA+GGG + chr6_4:15226254-15226273 Msa0978980:intron 40.0%
!! ATTCCCTCTACCTTTGAGAT+TGG - chr6_4:15226260-15226279 None:intergenic 40.0%
CACGGTTCAGCTACTATAAA+TGG - chr6_4:15226665-15226684 None:intergenic 40.0%
AACCAAACCAGATATGGAAC+TGG - chr6_4:15226702-15226721 None:intergenic 40.0%
!! TTGGCTTTTCATCCTCTTGA+TGG + chr6_4:15226794-15226813 Msa0978980:CDS 40.0%
! GCTTGAAGTATTCCATCAAG+AGG - chr6_4:15226809-15226828 None:intergenic 40.0%
ATAAACAAAGCCAGGCTATG+TGG - chr6_4:15226836-15226855 None:intergenic 40.0%
CTGGAACAATAAACAAAGCC+AGG - chr6_4:15226844-15226863 None:intergenic 40.0%
GCACCAAGTGTGCAATAAAA+TGG - chr6_4:15226868-15226887 None:intergenic 40.0%
CGGAAAATTATGGCCTGTTA+TGG + chr6_4:15226937-15226956 Msa0978980:CDS 40.0%
ATTACACCGTATGGATGGAT+TGG + chr6_4:15227011-15227030 Msa0978980:CDS 40.0%
GAACATCCAATCCATCCATA+CGG - chr6_4:15227020-15227039 None:intergenic 40.0%
!! GTATGGATGGATTGGATGTT+CGG + chr6_4:15227019-15227038 Msa0978980:CDS 40.0%
GTTTGGAAGAACCTTGGAAG+TGG - chr6_4:15223877-15223896 None:intergenic 45.0%
AGCCATGTTTGGAAGAACCT+TGG - chr6_4:15223883-15223902 None:intergenic 45.0%
TGGCTTCGTAACTACATTGG+TGG + chr6_4:15223898-15223917 Msa0978980:CDS 45.0%
ACGCCTTCGATCAGAATTGT+TGG + chr6_4:15224291-15224310 Msa0978980:intron 45.0%
TTTGAGAGTCCTAGGAAGCA+CGG + chr6_4:15224883-15224902 Msa0978980:intron 45.0%
ACATATGTCTGACACGACAC+CGG - chr6_4:15224932-15224951 None:intergenic 45.0%
GTCAAGTACTCGGAAAGAGT+TGG - chr6_4:15225432-15225451 None:intergenic 45.0%
! GCCGATTTCTGTCAAGTACT+CGG - chr6_4:15225442-15225461 None:intergenic 45.0%
AGTACTTGACAGAAATCGGC+TGG + chr6_4:15225442-15225461 Msa0978980:CDS 45.0%
GTTGGTTGGATTGCCTACAT+CGG + chr6_4:15225492-15225511 Msa0978980:CDS 45.0%
TGATGAACTCACCAGCAAAC+GGG - chr6_4:15225650-15225669 None:intergenic 45.0%
GAGAAATGAAGGGAAGAAGG+AGG + chr6_4:15225921-15225940 Msa0978980:intron 45.0%
GAACCTGATCGAATATGCGA+TGG + chr6_4:15226142-15226161 Msa0978980:intron 45.0%
CATCCATCGCATATTCGATC+AGG - chr6_4:15226148-15226167 None:intergenic 45.0%
GGAAGACAGTCCAATCTCAA+AGG + chr6_4:15226247-15226266 Msa0978980:intron 45.0%
CAGTCCAATCTCAAAGGTAG+AGG + chr6_4:15226253-15226272 Msa0978980:intron 45.0%
ACCAGTTAAATCCGCGAGTT+CGG - chr6_4:15226578-15226597 None:intergenic 45.0%
CCGTAGTTAGTGCAGATGTA+CGG - chr6_4:15226605-15226624 None:intergenic 45.0%
CCGTACATCTGCACTAACTA+CGG + chr6_4:15226602-15226621 Msa0978980:intron 45.0%
ATCTGCACTAACTACGGTTC+AGG + chr6_4:15226608-15226627 Msa0978980:intron 45.0%
TAACTACGGTTCAGGCAGTT+CGG + chr6_4:15226616-15226635 Msa0978980:intron 45.0%
CTGGCACGATATCAAGATCA+CGG - chr6_4:15226683-15226702 None:intergenic 45.0%
TATCGTGCCAGTTCCATATC+TGG + chr6_4:15226692-15226711 Msa0978980:intron 45.0%
TGCCAGTTCCATATCTGGTT+TGG + chr6_4:15226697-15226716 Msa0978980:intron 45.0%
TCAAGCATTACCACATAGCC+TGG + chr6_4:15226823-15226842 Msa0978980:CDS 45.0%
ACTATGGGCATTACACCGTA+TGG + chr6_4:15227002-15227021 Msa0978980:CDS 45.0%
CGTAGGCAAAGTGATGTGAT+TGG + chr6_4:15227066-15227085 Msa0978980:exon 45.0%
!!! TTTTTTTTATTTTTTTTAAG+TGG + chr6_4:15224347-15224366 Msa0978980:intron 5.0%
AGTGGGACCCACAAAAAGTG+AGG - chr6_4:15223859-15223878 None:intergenic 50.0%
! TTTTGTGGGTCCCACTTCCA+AGG + chr6_4:15223863-15223882 Msa0978980:CDS 50.0%
AGCACATGACACTGACACGT+TGG + chr6_4:15224225-15224244 Msa0978980:intron 50.0%
! ATTCTGATCGAAGGCGTGTC+TGG - chr6_4:15224288-15224307 None:intergenic 50.0%
! TAGGAAGCACGGACATTCCT+CGG + chr6_4:15224894-15224913 Msa0978980:intron 50.0%
CATATGTCTGACACGACACC+GGG - chr6_4:15224931-15224950 None:intergenic 50.0%
AATACTCTCTCCCCGTTTGC+TGG + chr6_4:15225636-15225655 Msa0978980:CDS 50.0%
GATGAACTCACCAGCAAACG+GGG - chr6_4:15225649-15225668 None:intergenic 50.0%
GTACACGGAAACTCCTACGT+AGG + chr6_4:15226200-15226219 Msa0978980:intron 50.0%
ACCGAACTCGCGGATTTAAC+TGG + chr6_4:15226574-15226593 Msa0978980:intron 50.0%
CTCGAACCAAGACGAAACTG+TGG - chr6_4:15226642-15226661 None:intergenic 50.0%
TTATGGCCTGTTATGGGAGC+TGG + chr6_4:15226944-15226963 Msa0978980:CDS 50.0%
TGGTAACCAGCTCCCATAAC+AGG - chr6_4:15226953-15226972 None:intergenic 50.0%
TGGGCATTACACCGTATGGA+TGG + chr6_4:15227006-15227025 Msa0978980:CDS 50.0%
ACTTTGCCTACGTCTTGCTC+GGG - chr6_4:15227058-15227077 None:intergenic 50.0%
CACTTTGCCTACGTCTTGCT+CGG - chr6_4:15227059-15227078 None:intergenic 50.0%
GAGGAATGTCCGTGCTTCCT+AGG - chr6_4:15224895-15224914 None:intergenic 55.0%
GCACGGACATTCCTCGGATT+AGG + chr6_4:15224900-15224919 Msa0978980:intron 55.0%
! TCCTCGGATTAGGCATGTCC+CGG + chr6_4:15224910-15224929 Msa0978980:intron 55.0%
CAGTCACTGGTAGACGAACG+AGG + chr6_4:15225955-15225974 Msa0978980:intron 55.0%
GACGTTGCAAAGACAGTCGC+CGG + chr6_4:15225979-15225998 Msa0978980:intron 55.0%
GTTCGGCCACAGTTTCGTCT+TGG + chr6_4:15226633-15226652 Msa0978980:intron 55.0%
ACCGGGACATGCCTAATCCG+AGG - chr6_4:15224914-15224933 None:intergenic 60.0%
GTCAGTGTCCGTGTCGTGTC+TGG + chr6_4:15225023-15225042 Msa0978980:intron 60.0%
CACGGACACCAGACACGACA+CGG - chr6_4:15225034-15225053 None:intergenic 60.0%
GGACGCTGTGTTGCAGTCAC+TGG + chr6_4:15225942-15225961 Msa0978980:intron 60.0%
TCTCTCACACCCTCCTCTGC+CGG - chr6_4:15226001-15226020 None:intergenic 60.0%
GCAAAGACAGTCGCCGGCAG+AGG + chr6_4:15225985-15226004 Msa0978980:intron 65.0%
AAGACAGTCGCCGGCAGAGG+AGG + chr6_4:15225988-15226007 Msa0978980:intron 65.0%
AGACAGTCGCCGGCAGAGGA+GGG + chr6_4:15225989-15226008 Msa0978980:intron 65.0%
CGCGATCCCGAGCAAGACGT+AGG + chr6_4:15227049-15227068 Msa0978980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 15223781 15227147 15223781 ID=Msa0978980;Name=Msa0978980
chr6_4 mRNA 15223781 15227147 15223781 ID=Msa0978980-mRNA-1;Parent=Msa0978980;Name=Msa0978980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|63|272
chr6_4 exon 15223781 15224000 15223781 ID=Msa0978980-mRNA-1:exon:4964;Parent=Msa0978980-mRNA-1
chr6_4 exon 15225352 15225657 15225352 ID=Msa0978980-mRNA-1:exon:4965;Parent=Msa0978980-mRNA-1
chr6_4 exon 15226792 15227147 15226792 ID=Msa0978980-mRNA-1:exon:4966;Parent=Msa0978980-mRNA-1
chr6_4 CDS 15223781 15224000 15223781 ID=Msa0978980-mRNA-1:cds;Parent=Msa0978980-mRNA-1
chr6_4 CDS 15225352 15225657 15225352 ID=Msa0978980-mRNA-1:cds;Parent=Msa0978980-mRNA-1
chr6_4 CDS 15226792 15227084 15226792 ID=Msa0978980-mRNA-1:cds;Parent=Msa0978980-mRNA-1
chr6_4 three_prime_UTR 15227085 15227147 15227085 ID=Msa0978980-mRNA-1:three_prime_utr;Parent=Msa0978980-mRNA-1
Gene Sequence

>Msa0978980

ATGGAAGACGATTACCGTACTCTCTTCATTGAAGACACAGATTTCTACAACAGCATTTTGTTGGGTACTTTGTTACCTCACTTTTTGTGGGTCCCACTTCCAAGGTTCTTCCAAACATGGCTTCGTAACTACATTGGTGGTCTTCTACTTTACTTCATTTCTGGTTTCTTTTGGTCCTTCTACATTTACTGTTGGAAACGCAATGTTTATCTCCCTAAAGATGCGGTTCCCTCACGTAGAGCCATATTCTTACAAATATCGGTTGCTTTGAAAGCCATGCATTGGTACACTTTGCTTCCAACTCTTTCCGAGTACTTGACAGAAATCGGCTGGACAAGATGCTTTCCTAGATTAAATAATGTTGGTTGGATTGCCTACATCGGTTATTTAGCGATGTATATGGTTATTGTGGAGTTTGGTATTTATTGGGCGCACAGAGTGCTGCATGACATAAAACCACTTTACAAATATCTTCATGCGACGCATCACATGTACAATAAACAGAATACTCTCTCCCCGTTTGCTGGTTTGGCTTTTCATCCTCTTGATGGAATACTTCAAGCATTACCACATAGCCTGGCTTTGTTTATTGTTCCAGTCCATTTTATTGCACACTTGGTGCTCTTATTCATTGAAGGTGTTTGGACCGCAAATATTCATGATTGCATTCACGGAAAATTATGGCCTGTTATGGGAGCTGGTTACCATACCATTCATCATACGACATATCGACATAACTATGGGCATTACACCGTATGGATGGATTGGATGTTCGGTACTCTTCGCGATCCCGAGCAAGACGTAGGCAAAGTGATGTGA

Protein sequence

>Msa0978980

MEDDYRTLFIEDTDFYNSILLGTLLPHFLWVPLPRFFQTWLRNYIGGLLLYFISGFFWSFYIYCWKRNVYLPKDAVPSRRAIFLQISVALKAMHWYTLLPTLSEYLTEIGWTRCFPRLNNVGWIAYIGYLAMYMVIVEFGIYWAHRVLHDIKPLYKYLHATHHMYNKQNTLSPFAGLAFHPLDGILQALPHSLALFIVPVHFIAHLVLLFIEGVWTANIHDCIHGKLWPVMGAGYHTIHHTTYRHNYGHYTVWMDWMFGTLRDPEQDVGKVM*