Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457080 | XP_003631073.1 | 98.200 | 611 | 11 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457080 | sp|Q9LV35|AIP12_ARATH | 75.000 | 608 | 151 | 1 | 4 | 610 | 1 | 608 | 0.0 | 957 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457080 | Q1SN19 | 98.200 | 611 | 11 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0639110 | Msa1457080 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0687440 | Msa1457080 | 0.801561 | 8.495300e-49 | -8.615850e-47 |
| Msa0930080 | Msa1457080 | 0.962943 | 1.750809e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457080 | MtrunA17_Chr8g0392731 | 98.200 | 611 | 11 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1226 |
| Msa1457080 | MtrunA17_Chr1g0208291 | 72.968 | 603 | 163 | 0 | 6 | 608 | 4 | 606 | 0.0 | 930 |
| Msa1457080 | MtrunA17_Chr1g0172501 | 25.581 | 301 | 201 | 9 | 61 | 357 | 274 | 555 | 9.00e-14 | 74.3 |
| Msa1457080 | MtrunA17_Chr3g0093681 | 25.249 | 301 | 202 | 9 | 61 | 357 | 274 | 555 | 4.44e-13 | 72.0 |
| Msa1457080 | MtrunA17_Chr1g0176241 | 37.273 | 110 | 61 | 3 | 158 | 264 | 337 | 441 | 1.07e-12 | 70.9 |
| Msa1457080 | MtrunA17_Chr3g0095501 | 24.302 | 358 | 216 | 13 | 179 | 531 | 259 | 566 | 1.04e-11 | 67.8 |
| Msa1457080 | MtrunA17_Chr5g0401671 | 23.237 | 241 | 162 | 8 | 53 | 284 | 341 | 567 | 2.97e-11 | 66.2 |
| Msa1457080 | MtrunA17_Chr1g0185501 | 22.989 | 348 | 211 | 13 | 179 | 520 | 16 | 312 | 6.83e-11 | 63.9 |
| Msa1457080 | MtrunA17_Chr4g0070791 | 27.854 | 219 | 133 | 8 | 66 | 265 | 109 | 321 | 8.98e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457080 | AT3G18060.1 | 75.000 | 608 | 151 | 1 | 4 | 610 | 1 | 608 | 0.0 | 957 |
| Msa1457080 | AT2G01330.1 | 67.323 | 609 | 195 | 4 | 5 | 610 | 3 | 610 | 0.0 | 862 |
| Msa1457080 | AT5G52820.1 | 22.738 | 431 | 281 | 13 | 148 | 564 | 80 | 472 | 7.32e-13 | 71.6 |
| Msa1457080 | AT2G43770.1 | 26.174 | 298 | 199 | 10 | 58 | 348 | 52 | 335 | 8.76e-12 | 67.4 |
| Msa1457080 | AT5G67320.1 | 23.967 | 242 | 161 | 8 | 52 | 284 | 358 | 585 | 2.01e-11 | 67.4 |
| Msa1457080 | AT4G02730.1 | 24.138 | 348 | 203 | 12 | 51 | 392 | 35 | 327 | 6.33e-11 | 64.7 |
Find 189 sgRNAs with CRISPR-Local
Find 461 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCACTTAGGTGGGGTTTA+TGG | 0.082114 | tig0038342:-14904 | Msa1457080:CDS |
| TATTGGCTATTTCAATAATT+TGG | 0.114023 | tig0038342:+21707 | None:intergenic |
| AAGGAGTTTCGTGTTCTTTC+TGG | 0.134342 | tig0038342:-20968 | Msa1457080:CDS |
| CTGCACATATATTCTATTTC+TGG | 0.164431 | tig0038342:-15550 | Msa1457080:CDS |
| ACCTAAGTGAGCACCCTTTA+TGG | 0.179066 | tig0038342:+14915 | None:intergenic |
| AATCCCTGATGTTCTCATTT+TGG | 0.185647 | tig0038342:-14409 | Msa1457080:three_prime_UTR |
| CTCACTTAGGTGGGGTTTAT+GGG | 0.206529 | tig0038342:-14903 | Msa1457080:CDS |
| AACCGTTAGTTCTGACAAAA+AGG | 0.227495 | tig0038342:-18279 | Msa1457080:CDS |
| GTTCTAGTTTCAATTGATTC+AGG | 0.254254 | tig0038342:-15691 | Msa1457080:CDS |
| GCAATGGATAGGTGGGATTC+TGG | 0.264908 | tig0038342:-20286 | Msa1457080:intron |
| TGAAATAGCCAATATATTCT+TGG | 0.269146 | tig0038342:-21698 | Msa1457080:intron |
| GTAGCAATCCTACTGCTATC+AGG | 0.285417 | tig0038342:+15000 | None:intergenic |
| CTGACAAGTCTGCAAAAGTA+TGG | 0.313171 | tig0038342:-16991 | Msa1457080:CDS |
| CCCCTTCATGTCTCCGTCTA+TGG | 0.323756 | tig0038342:-21109 | Msa1457080:CDS |
| ACCATCCTGACCACCAATAA+TGG | 0.326504 | tig0038342:+15576 | None:intergenic |
| TGTCAGGTACCGTGAGGATC+TGG | 0.337070 | tig0038342:-21018 | Msa1457080:CDS |
| GTTGTGTCAATCATTAATCT+TGG | 0.338589 | tig0038342:-15643 | Msa1457080:CDS |
| GTAGGTGATGGTGTTGGATT+TGG | 0.348835 | tig0038342:+21171 | None:intergenic |
| ATTCACTGATGAATATAGTT+TGG | 0.351324 | tig0038342:-14875 | Msa1457080:CDS |
| GAAAATCGAGCGACGGTGGC+AGG | 0.372098 | tig0038342:+21073 | None:intergenic |
| CAGCATAAATACTGCCAGTA+TGG | 0.381490 | tig0038342:+18198 | None:intergenic |
| ATCAAGTTGTAAAGGGAAAG+TGG | 0.385370 | tig0038342:-14797 | Msa1457080:three_prime_UTR |
| CATGAGATCCAAGAATATAT+TGG | 0.389906 | tig0038342:+21690 | None:intergenic |
| GGCTAATAGAAATACCATAA+AGG | 0.390095 | tig0038342:-14929 | Msa1457080:CDS |
| CAATAATTTGGAGATGCAAT+TGG | 0.392653 | tig0038342:+21719 | None:intergenic |
| GAAACATCCCCTCTCTAACT+TGG | 0.396563 | tig0038342:+14689 | None:intergenic |
| TATCTTGTCACTGTTTCTCT+TGG | 0.401428 | tig0038342:-16866 | Msa1457080:CDS |
| TTGATTCCCTGTAATGTACT+TGG | 0.404674 | tig0038342:+14445 | None:intergenic |
| GTTACTTCTGAGAATGGTTA+AGG | 0.405078 | tig0038342:+16763 | None:intergenic |
| CTTGTCACTGTTTCTCTTGG+TGG | 0.406048 | tig0038342:-16863 | Msa1457080:CDS |
| GAAGAAGAGATTGTTATGTC+TGG | 0.410474 | tig0038342:-16620 | Msa1457080:CDS |
| AAAACCAAAATGAGAACATC+AGG | 0.412648 | tig0038342:+14405 | None:intergenic |
| TCTTCTGAAGGTGGCCATAC+TGG | 0.414349 | tig0038342:-18212 | Msa1457080:CDS |
| ATTGAAACTAGAACAAGTTC+AGG | 0.414746 | tig0038342:+15700 | None:intergenic |
| GCTAATAGAAATACCATAAA+GGG | 0.416716 | tig0038342:-14928 | Msa1457080:CDS |
| TAATCGAGAAGCTGTTGTTT+GGG | 0.419514 | tig0038342:-15428 | Msa1457080:CDS |
| GCGACTTGCAAGCTTCTGTT+TGG | 0.420696 | tig0038342:-14604 | Msa1457080:three_prime_UTR |
| TTAATCGAGAAGCTGTTGTT+TGG | 0.423105 | tig0038342:-15429 | Msa1457080:CDS |
| ACATTGATTTGTTCTGCCTC+TGG | 0.424474 | tig0038342:-16932 | Msa1457080:CDS |
| ACAATGCGAAAAGGCCTTGT+AGG | 0.425304 | tig0038342:+20205 | None:intergenic |
| GATGCTGAAGCCATTGATAT+CGG | 0.426975 | tig0038342:-15760 | Msa1457080:CDS |
| TTTCAAAATGTAGACTACTA+TGG | 0.427064 | tig0038342:-14522 | Msa1457080:three_prime_UTR |
| CTCCTGTCTTGTAGTTATGA+TGG | 0.428145 | tig0038342:-16731 | Msa1457080:CDS |
| CTATTGATTGTGCGATATGA+AGG | 0.430370 | tig0038342:-14575 | Msa1457080:three_prime_UTR |
| GACAATTTATCCGTGCAGTA+TGG | 0.435214 | tig0038342:+15034 | None:intergenic |
| CAATGGATAGGTGGGATTCT+GGG | 0.435336 | tig0038342:-20285 | Msa1457080:intron |
| CTCTTCTTCTGCAGCTGCTA+AGG | 0.435458 | tig0038342:+16634 | None:intergenic |
| CTACAAGACAGGAGCACTCT+AGG | 0.437677 | tig0038342:+16740 | None:intergenic |
| GATGAGCTCGGTGGAGTTGA+CGG | 0.438057 | tig0038342:-21254 | Msa1457080:CDS |
| CGAGATTGCTTAAATCTAAA+GGG | 0.439758 | tig0038342:+20139 | None:intergenic |
| GGTATCAGAATTGTCGCTTC+TGG | 0.440339 | tig0038342:-20914 | Msa1457080:CDS |
| CACGGATAAATTGTCTTGCT+TGG | 0.442191 | tig0038342:-15026 | Msa1457080:CDS |
| TGAAGCCATTATTGGTGGTC+AGG | 0.444420 | tig0038342:-15581 | Msa1457080:CDS |
| TACAAACAGTTATATCAATC+TGG | 0.445143 | tig0038342:+14380 | None:intergenic |
| CCTTTACAACTTGATCTTCA+CGG | 0.445771 | tig0038342:+14805 | None:intergenic |
| AGTGCAACACTAAAATCCTT+TGG | 0.445789 | tig0038342:+15730 | None:intergenic |
| GTTACAAATTTACTGCCATC+TGG | 0.447597 | tig0038342:+18299 | None:intergenic |
| GATGGAAGTGAAGCCATTAT+TGG | 0.448281 | tig0038342:-15589 | Msa1457080:CDS |
| TATGTCCTGAAAACGATGTC+GGG | 0.452600 | tig0038342:+16801 | None:intergenic |
| TTAATAGTTAAGTGGATTCA+AGG | 0.455728 | tig0038342:-16707 | Msa1457080:CDS |
| TTGTCACTGTTTCTCTTGGT+GGG | 0.456402 | tig0038342:-16862 | Msa1457080:CDS |
| AAACATCCCCTCTCTAACTT+GGG | 0.457062 | tig0038342:+14690 | None:intergenic |
| GCGAGATTGCTTAAATCTAA+AGG | 0.459551 | tig0038342:+20138 | None:intergenic |
| GTTAAGTGGATTCAAGGGAT+TGG | 0.468346 | tig0038342:-16701 | Msa1457080:CDS |
| GTCAGGTACCGTGAGGATCT+GGG | 0.468616 | tig0038342:-21017 | Msa1457080:CDS |
| CGTGAAGATCAAGTTGTAAA+GGG | 0.468706 | tig0038342:-14804 | Msa1457080:exon |
| GAATATAGTTTGGTTAGCTC+AGG | 0.471315 | tig0038342:-14865 | Msa1457080:CDS |
| ACTAATGTTGGTGAATTTGA+TGG | 0.472283 | tig0038342:-20262 | Msa1457080:CDS |
| CGCCATAGACGGAGACATGA+AGG | 0.472952 | tig0038342:+21107 | None:intergenic |
| TAATCTTGGATTTACTGTTA+CGG | 0.474705 | tig0038342:-15629 | Msa1457080:CDS |
| CCACGGCCACGTTCTGTTGA+AGG | 0.475561 | tig0038342:+21214 | None:intergenic |
| ATAAGGCGGGTTTCTTTACA+TGG | 0.476069 | tig0038342:-15796 | Msa1457080:CDS |
| GCATCTGTTGTCTCGTCTGA+TGG | 0.480001 | tig0038342:-15607 | Msa1457080:CDS |
| GCAGTATTTATGCTGTTAGC+TGG | 0.481308 | tig0038342:-18190 | Msa1457080:CDS |
| ATCATATTCGATGGAAAGAC+TGG | 0.482024 | tig0038342:-18254 | Msa1457080:CDS |
| GACATATCTGAGGATAATAG+TGG | 0.491671 | tig0038342:-16968 | Msa1457080:CDS |
| TTGATTTGTTCTGCCTCTGG+TGG | 0.491775 | tig0038342:-16929 | Msa1457080:CDS |
| GGAGTTGAAGACATGCTTGT+AGG | 0.493315 | tig0038342:-16908 | Msa1457080:CDS |
| ATTCATCATGATAACCGATC+TGG | 0.494504 | tig0038342:+21141 | None:intergenic |
| CCGTGAAGATCAAGTTGTAA+AGG | 0.495196 | tig0038342:-14805 | Msa1457080:exon |
| AGACTGTCCTTGAGAAACAT+AGG | 0.495310 | tig0038342:-15510 | Msa1457080:CDS |
| GTTGCATCTGCTGACGTGTC+AGG | 0.496526 | tig0038342:-21034 | Msa1457080:CDS |
| GCCATTATTGGTGGTCAGGA+TGG | 0.505715 | tig0038342:-15577 | Msa1457080:CDS |
| TCTAGGGTTACTTCTGAGAA+TGG | 0.505822 | tig0038342:+16757 | None:intergenic |
| ATGATGGCTTAATAGTTAAG+TGG | 0.506182 | tig0038342:-16715 | Msa1457080:CDS |
| GATGCAACCCATTCACCGTT+GGG | 0.506443 | tig0038342:+21049 | None:intergenic |
| ACGTTCTGTTGAAGGCGTGC+AGG | 0.508737 | tig0038342:+21222 | None:intergenic |
| CTTGGTCCCCTGATAGCAGT+AGG | 0.509910 | tig0038342:-15008 | Msa1457080:CDS |
| TAGCAATCCTACTGCTATCA+GGG | 0.510406 | tig0038342:+15001 | None:intergenic |
| ATGGTATTTCTATTAGCCAC+AGG | 0.512733 | tig0038342:+14934 | None:intergenic |
| CATGATAACCGATCTGGCAT+TGG | 0.515012 | tig0038342:+21147 | None:intergenic |
| CCACAGGTGACAATGCGAAA+AGG | 0.517474 | tig0038342:+20196 | None:intergenic |
| TCAAGTTGTAAAGGGAAAGT+GGG | 0.517637 | tig0038342:-14796 | Msa1457080:three_prime_UTR |
| GGCCGTGGTATTCTCATCTC+CGG | 0.518010 | tig0038342:-21199 | Msa1457080:CDS |
| GTCGCTTCTGGTGAAGCTAA+AGG | 0.520427 | tig0038342:-20902 | Msa1457080:CDS |
| TGGTTGACTTCCGATATCAA+TGG | 0.521473 | tig0038342:+15750 | None:intergenic |
| GACTGTCCTTGAGAAACATA+GGG | 0.523830 | tig0038342:-15509 | Msa1457080:CDS |
| TCTCTCTTTCAAGATGAGCT+CGG | 0.527575 | tig0038342:-21266 | Msa1457080:exon |
| TAAAGGGTGCTCACTTAGGT+GGG | 0.536033 | tig0038342:-14912 | Msa1457080:CDS |
| TTCTGTCAACTAGATAAGGC+GGG | 0.537021 | tig0038342:-15809 | Msa1457080:intron |
| AGATGCAACCCATTCACCGT+TGG | 0.537671 | tig0038342:+21048 | None:intergenic |
| GAGTTGAAGACATGCTTGTA+GGG | 0.539058 | tig0038342:-16907 | Msa1457080:CDS |
| GCGACAATTCTGATACCATC+AGG | 0.539289 | tig0038342:+20920 | None:intergenic |
| AAAAGTCAAAACTGATGAAG+AGG | 0.539438 | tig0038342:-14727 | Msa1457080:three_prime_UTR |
| GATAGCAGTAGGATTGCTAC+AGG | 0.543234 | tig0038342:-14997 | Msa1457080:CDS |
| TACAAGACAGGAGCACTCTA+GGG | 0.546231 | tig0038342:+16741 | None:intergenic |
| TACTCACATCTCGGGAGGCA+CGG | 0.546800 | tig0038342:+15404 | None:intergenic |
| GCTGTTAGCTGGAGTCCTGA+TGG | 0.548585 | tig0038342:-18179 | Msa1457080:CDS |
| AGTACTAGTACTCACATCTC+GGG | 0.551436 | tig0038342:+15396 | None:intergenic |
| TAGCGGTAAATTACAAAGGA+AGG | 0.551726 | tig0038342:-16675 | Msa1457080:CDS |
| AGCCATCATAACTACAAGAC+AGG | 0.557501 | tig0038342:+16729 | None:intergenic |
| GTAAGCATGTTCGCCATAGA+CGG | 0.558880 | tig0038342:+21096 | None:intergenic |
| CACCTACACCAATGCCAGAT+CGG | 0.562580 | tig0038342:-21155 | Msa1457080:CDS |
| ACCATAAAGGGTGCTCACTT+AGG | 0.564151 | tig0038342:-14916 | Msa1457080:CDS |
| ATTGGTGTAGGTGATGGTGT+TGG | 0.567354 | tig0038342:+21165 | None:intergenic |
| ATAAAGGGTGCTCACTTAGG+TGG | 0.568101 | tig0038342:-14913 | Msa1457080:CDS |
| GGTGTTGGATTTGGAGTCGC+CGG | 0.568267 | tig0038342:+21180 | None:intergenic |
| TGGGATTCTGGGACTAATGT+TGG | 0.568712 | tig0038342:-20274 | Msa1457080:CDS |
| TCGCATTGTCACCTGTGGAG+AGG | 0.571600 | tig0038342:-20191 | Msa1457080:CDS |
| TAATAGTTAAGTGGATTCAA+GGG | 0.572072 | tig0038342:-16706 | Msa1457080:CDS |
| ATATGTCCTGAAAACGATGT+CGG | 0.572109 | tig0038342:+16800 | None:intergenic |
| CCTTCAACAGAACGTGGCCG+TGG | 0.572710 | tig0038342:-21214 | Msa1457080:CDS |
| CAAGATAATCGTTCAACCAC+AGG | 0.574023 | tig0038342:+16882 | None:intergenic |
| GACAAGAAAATCCTCTCCAC+AGG | 0.576600 | tig0038342:+20180 | None:intergenic |
| ATCGGTGAGTTATCTTCTGA+AGG | 0.580609 | tig0038342:-18224 | Msa1457080:CDS |
| AACTCAAAACTCGTCTTGAG+TGG | 0.584201 | tig0038342:+20239 | None:intergenic |
| CTTATCACCCCAAGTTAGAG+AGG | 0.584499 | tig0038342:-14698 | Msa1457080:three_prime_UTR |
| GATCTTCAGTGGTCTCCTGA+TGG | 0.585210 | tig0038342:-20935 | Msa1457080:CDS |
| TACAACTTGATCTTCACGGA+GGG | 0.586215 | tig0038342:+14809 | None:intergenic |
| ACATGCTTGTAGGGTGCCTG+TGG | 0.597201 | tig0038342:-16898 | Msa1457080:CDS |
| TGACAAGTCTGCAAAAGTAT+GGG | 0.598045 | tig0038342:-16990 | Msa1457080:CDS |
| AGTTTCGTGTTCTTTCTGGA+AGG | 0.598240 | tig0038342:-20964 | Msa1457080:CDS |
| GCCATAGACGGAGACATGAA+GGG | 0.598923 | tig0038342:+21108 | None:intergenic |
| AAAATCGAGCGACGGTGGCA+GGG | 0.599251 | tig0038342:+21074 | None:intergenic |
| GGAAAGACTGGAGAGAAGAT+CGG | 0.599432 | tig0038342:-18242 | Msa1457080:CDS |
| CTTCTGTCAACTAGATAAGG+CGG | 0.601647 | tig0038342:-15810 | Msa1457080:intron |
| AATGCAGTGCACGATGATGA+TGG | 0.604966 | tig0038342:+21290 | None:intergenic |
| ATCTGAGGATAATAGTGGGA+AGG | 0.606291 | tig0038342:-16963 | Msa1457080:CDS |
| CTCTTTCAAGATGAGCTCGG+TGG | 0.606493 | tig0038342:-21263 | Msa1457080:exon |
| TTGTTTGTTCATATATCACA+AGG | 0.607911 | tig0038342:-14636 | Msa1457080:three_prime_UTR |
| TATTTCTATTAGCCACAGGT+TGG | 0.608800 | tig0038342:+14938 | None:intergenic |
| AAAGGGTGCTCACTTAGGTG+GGG | 0.609702 | tig0038342:-14911 | Msa1457080:CDS |
| ACAACTTGATCTTCACGGAG+GGG | 0.609851 | tig0038342:+14810 | None:intergenic |
| TAGCACCCCTATGTTTCTCA+AGG | 0.610582 | tig0038342:+15503 | None:intergenic |
| AAGGCGGGTTTCTTTACATG+GGG | 0.611641 | tig0038342:-15794 | Msa1457080:CDS |
| AAAGTCAAAACTGATGAAGA+GGG | 0.615257 | tig0038342:-14726 | Msa1457080:three_prime_UTR |
| TCTGGCATTGGTGTAGGTGA+TGG | 0.618379 | tig0038342:+21159 | None:intergenic |
| GATATAGCGGTAAATTACAA+AGG | 0.618475 | tig0038342:-16679 | Msa1457080:CDS |
| TAAGGCGGGTTTCTTTACAT+GGG | 0.618983 | tig0038342:-15795 | Msa1457080:CDS |
| TGTGTGAGATATTCTCCAGA+TGG | 0.622541 | tig0038342:-18314 | Msa1457080:CDS |
| TAGTTTGGTTAGCTCAGGCG+AGG | 0.625931 | tig0038342:-14860 | Msa1457080:CDS |
| GGGTGAAAATCGAGCGACGG+TGG | 0.626749 | tig0038342:+21069 | None:intergenic |
| AACATCCCCTCTCTAACTTG+GGG | 0.627088 | tig0038342:+14691 | None:intergenic |
| TCAGGTACCGTGAGGATCTG+GGG | 0.627630 | tig0038342:-21016 | Msa1457080:CDS |
| TTAGATTTAAGCAATCTCGC+AGG | 0.628883 | tig0038342:-20135 | Msa1457080:intron |
| ACTTCTGAGAATGGTTAAGG+AGG | 0.628997 | tig0038342:+16766 | None:intergenic |
| GTTGTGCTTATAAACCTACA+AGG | 0.629807 | tig0038342:-20219 | Msa1457080:CDS |
| CCATAGACGGAGACATGAAG+GGG | 0.633505 | tig0038342:+21109 | None:intergenic |
| ACATATCTGAGGATAATAGT+GGG | 0.634727 | tig0038342:-16967 | Msa1457080:CDS |
| GAAGGATCGATGATCTTCAG+TGG | 0.639646 | tig0038342:-20946 | Msa1457080:CDS |
| ATACATAAAAGCGCGAACAA+AGG | 0.644313 | tig0038342:+20874 | None:intergenic |
| TTATCACCCCAAGTTAGAGA+GGG | 0.646189 | tig0038342:-14697 | Msa1457080:three_prime_UTR |
| TGATATCGGAAGTCAACCAA+AGG | 0.651151 | tig0038342:-15746 | Msa1457080:CDS |
| ATGTCCTGAAAACGATGTCG+GGG | 0.652427 | tig0038342:+16802 | None:intergenic |
| CATGTCTTCAACTCCACCAG+AGG | 0.652652 | tig0038342:+16916 | None:intergenic |
| GCGAGTTCCCCAGATCCTCA+CGG | 0.657058 | tig0038342:+21009 | None:intergenic |
| AAAAGTATGGGACATATCTG+AGG | 0.658576 | tig0038342:-16978 | Msa1457080:CDS |
| GGTGAGTTATCTTCTGAAGG+TGG | 0.661525 | tig0038342:-18221 | Msa1457080:CDS |
| GGAAGTGAAGCCATTATTGG+TGG | 0.661612 | tig0038342:-15586 | Msa1457080:CDS |
| ACATGCTGTACCATACTGCA+CGG | 0.663929 | tig0038342:-15044 | Msa1457080:CDS |
| AACCGATCTGGCATTGGTGT+AGG | 0.664335 | tig0038342:+21153 | None:intergenic |
| TGCACGCCTTCAACAGAACG+TGG | 0.678162 | tig0038342:-21220 | Msa1457080:CDS |
| TCTTTACATGGGGATCAGTG+CGG | 0.680969 | tig0038342:-15784 | Msa1457080:CDS |
| GTGCACGATGATGATGGTGA+TGG | 0.685538 | tig0038342:+21296 | None:intergenic |
| TATCACCCCAAGTTAGAGAG+GGG | 0.694883 | tig0038342:-14696 | Msa1457080:three_prime_UTR |
| AAACCAAAATGAGAACATCA+GGG | 0.695207 | tig0038342:+14406 | None:intergenic |
| ATATGAGATTGACCAACCTG+TGG | 0.696248 | tig0038342:-14950 | Msa1457080:CDS |
| TCAGGAGTTGTCATGCTGCG+TGG | 0.701235 | tig0038342:-15673 | Msa1457080:CDS |
| ATTCAAGGGATTGGATATAG+CGG | 0.701405 | tig0038342:-16692 | Msa1457080:CDS |
| GTTGGGTGAAAATCGAGCGA+CGG | 0.702331 | tig0038342:+21066 | None:intergenic |
| GATTGCTTAAATCTAAAGGG+AGG | 0.704673 | tig0038342:+20142 | None:intergenic |
| ACTAGTACTCACATCTCGGG+AGG | 0.705295 | tig0038342:+15399 | None:intergenic |
| GAGGGGTTATCTTCCAGACA+CGG | 0.708079 | tig0038342:+14827 | None:intergenic |
| CTGACGTGTCAGGTACCGTG+AGG | 0.722749 | tig0038342:-21024 | Msa1457080:CDS |
| AGCAATCCTACTGCTATCAG+GGG | 0.726822 | tig0038342:+15002 | None:intergenic |
| ACTGTCCTTGAGAAACATAG+GGG | 0.726823 | tig0038342:-15508 | Msa1457080:CDS |
| CGCCGGAGATGAGAATACCA+CGG | 0.738636 | tig0038342:+21197 | None:intergenic |
| TTACAACTTGATCTTCACGG+AGG | 0.742051 | tig0038342:+14808 | None:intergenic |
| CATAGACGGAGACATGAAGG+GGG | 0.769626 | tig0038342:+21110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATTT+AGG | - | tig0038342:15195-15214 | Msa1457080:intron | 0.0% |
| !! | TAAAAAAGGATAAATAAATT+AGG | + | tig0038342:14528-14547 | None:intergenic | 10.0% |
| !!! | TATATATATATATTTAGGAT+AGG | - | tig0038342:15200-15219 | Msa1457080:intron | 10.0% |
| !!! | TTGATTTTAAAATTTCAAAT+AGG | + | tig0038342:18320-18339 | None:intergenic | 10.0% |
| !! | CAAATGAAATTAATTATATT+GGG | + | tig0038342:19874-19893 | None:intergenic | 10.0% |
| !! | TCAAATGAAATTAATTATAT+TGG | + | tig0038342:19875-19894 | None:intergenic | 10.0% |
| !!! | AACTAAGTATAAATTTTATT+TGG | - | tig0038342:21681-21700 | Msa1457080:intron | 10.0% |
| !!! | ATGTTATAACTTGTTTTTAT+AGG | - | tig0038342:15482-15501 | Msa1457080:CDS | 15.0% |
| !!! | TAATTAGACACATATTTTTA+AGG | + | tig0038342:16074-16093 | None:intergenic | 15.0% |
| !!! | GATAAAACATAAAAAGTATA+TGG | + | tig0038342:16127-16146 | None:intergenic | 15.0% |
| !!! | TGGTTTTATAAATTATAGAT+AGG | + | tig0038342:16459-16478 | None:intergenic | 15.0% |
| !! | ATCAAGAAAAAAATTAGAAT+TGG | - | tig0038342:16598-16617 | Msa1457080:intron | 15.0% |
| !!! | AAATTAATCAGTTAGTTTTA+TGG | + | tig0038342:16818-16837 | None:intergenic | 15.0% |
| !!! | GTATTAATTAATTTTAAGTG+AGG | + | tig0038342:17362-17381 | None:intergenic | 15.0% |
| !!! | TGAGTATTTTTTATTGATTA+TGG | - | tig0038342:17841-17860 | Msa1457080:intron | 15.0% |
| !!! | TTTTGCAATTAAAATGAAAA+AGG | - | tig0038342:20767-20786 | Msa1457080:intron | 15.0% |
| !! | ATAATACTTTCGTTATTTAA+AGG | + | tig0038342:20816-20835 | None:intergenic | 15.0% |
| !!! | AATTTATACTTAGTTTTGTT+TGG | + | tig0038342:21676-21695 | None:intergenic | 15.0% |
| !!! | TATTGGCTATTTCAATAATT+TGG | + | tig0038342:14273-14292 | None:intergenic | 20.0% |
| !! | AAGAAAAGAAAAGAAAAGAA+AGG | + | tig0038342:15139-15158 | None:intergenic | 20.0% |
| !! | AATAAGTGTTTATACATGAT+AGG | + | tig0038342:15367-15386 | None:intergenic | 20.0% |
| !!! | ATGTTTGAGTGAATATTTTT+TGG | - | tig0038342:15602-15621 | Msa1457080:CDS | 20.0% |
| !!! | AAGACATTTTTCTTTATAGA+AGG | + | tig0038342:16149-16168 | None:intergenic | 20.0% |
| !! | AATTAAATCAACTAAGTTGT+TGG | + | tig0038342:16503-16522 | None:intergenic | 20.0% |
| !! | GTGCAAATCTATATAAAATA+TGG | - | tig0038342:16540-16559 | Msa1457080:intron | 20.0% |
| !! | TTGATATATTACAAAATCTG+TGG | + | tig0038342:16583-16602 | None:intergenic | 20.0% |
| !! | TAAATGAGAATATTGATCTT+TGG | + | tig0038342:16624-16643 | None:intergenic | 20.0% |
| !!! | TTCTCATTTATTTTATAGCA+AGG | - | tig0038342:16634-16653 | Msa1457080:CDS | 20.0% |
| !!! | ATTTTTAAATTATGCTCACT+TGG | + | tig0038342:16846-16865 | None:intergenic | 20.0% |
| !!! | TTGCAGATATTTTTAAAATG+TGG | + | tig0038342:17425-17444 | None:intergenic | 20.0% |
| !! | ACACTATCTTTAAACATAAA+GGG | + | tig0038342:17512-17531 | None:intergenic | 20.0% |
| !! | TACACTATCTTTAAACATAA+AGG | + | tig0038342:17513-17532 | None:intergenic | 20.0% |
| !!! | ACGATAATTTGTTTATGTAT+AGG | - | tig0038342:17619-17638 | Msa1457080:intron | 20.0% |
| !!! | CGATAATTTGTTTATGTATA+GGG | - | tig0038342:17620-17639 | Msa1457080:intron | 20.0% |
| !!! | TATTTTTTATTGATTATGGC+AGG | - | tig0038342:17845-17864 | Msa1457080:intron | 20.0% |
| !! | ACTATAAACTAAGAAATATG+TGG | - | tig0038342:17975-17994 | Msa1457080:intron | 20.0% |
| !! | TGAGATTTATTATTCTACAT+TGG | + | tig0038342:18660-18679 | None:intergenic | 20.0% |
| !! | AGAATAATAAATCTCATTCA+AGG | - | tig0038342:18664-18683 | Msa1457080:intron | 20.0% |
| !! | TTTGTTTATCCAAATCAAAT+TGG | + | tig0038342:19471-19490 | None:intergenic | 20.0% |
| !!! | GATGAAATAAATCATTTTCT+CGG | - | tig0038342:19536-19555 | Msa1457080:intron | 20.0% |
| !! | TGTTATCTATTGAAGTATAT+TGG | - | tig0038342:19559-19578 | Msa1457080:intron | 20.0% |
| !! | ATTACTACTGCTTATTTAAT+GGG | + | tig0038342:19631-19650 | None:intergenic | 20.0% |
| !! | AATTACTACTGCTTATTTAA+TGG | + | tig0038342:19632-19651 | None:intergenic | 20.0% |
| !! | TTGCTAACTTATAATATCTT+GGG | + | tig0038342:19977-19996 | None:intergenic | 20.0% |
| !! | ATTGCTAACTTATAATATCT+TGG | + | tig0038342:19978-19997 | None:intergenic | 20.0% |
| !! | ATATTATAAGTTAGCAATTG+AGG | - | tig0038342:19980-19999 | Msa1457080:intron | 20.0% |
| !!! | TTCATTTTAATTGCAAAACT+GGG | + | tig0038342:20765-20784 | None:intergenic | 20.0% |
| !!! | TTTCATTTTAATTGCAAAAC+TGG | + | tig0038342:20766-20785 | None:intergenic | 20.0% |
| ! | TGAAATAGCCAATATATTCT+TGG | - | tig0038342:14279-14298 | Msa1457080:three_prime_UTR | 25.0% |
| !! | TTAATCAATTTAGTTCCTAG+CGG | - | tig0038342:14314-14333 | Msa1457080:three_prime_UTR | 25.0% |
| ! | CTTTCATTTACAACTAATCA+TGG | - | tig0038342:15271-15290 | Msa1457080:intron | 25.0% |
| !! | CATCTAGATAAACTATTTTC+AGG | + | tig0038342:15465-15484 | None:intergenic | 25.0% |
| ! | AAGCATCAAAATCAGATATA+GGG | + | tig0038342:15573-15592 | None:intergenic | 25.0% |
| !! | AAAGCATCAAAATCAGATAT+AGG | + | tig0038342:15574-15593 | None:intergenic | 25.0% |
| !! | TTTCTTGTCAACTTTTATGA+AGG | - | tig0038342:15811-15830 | Msa1457080:intron | 25.0% |
| !!! | ATATTTTTAAGGACATGCAA+GGG | + | tig0038342:16063-16082 | None:intergenic | 25.0% |
| !! | ATGGCAATATGCAAAATTTT+GGG | + | tig0038342:16108-16127 | None:intergenic | 25.0% |
| !! | TATGGCAATATGCAAAATTT+TGG | + | tig0038342:16109-16128 | None:intergenic | 25.0% |
| !! | TTGATGAATTTTCAAAACAC+TGG | - | tig0038342:16171-16190 | Msa1457080:intron | 25.0% |
| !!! | TTGCGGATATTTTTAAAATG+TGG | + | tig0038342:16298-16317 | None:intergenic | 25.0% |
| ! | TAATGAGAATTCAGTATTTG+CGG | + | tig0038342:16315-16334 | None:intergenic | 25.0% |
| ! | ACTTGAATCATACATAAAGT+TGG | + | tig0038342:16660-16679 | None:intergenic | 25.0% |
| ! | TGATTTGAATGAATGATTCA+TGG | + | tig0038342:16884-16903 | None:intergenic | 25.0% |
| ! | CACACTTCAAAAATCAAAAT+TGG | + | tig0038342:17057-17076 | None:intergenic | 25.0% |
| ! | GGAAATACAAAAATACTAAC+CGG | - | tig0038342:17246-17265 | Msa1457080:intron | 25.0% |
| ! | TTTAAACATAAAGGGAAAAG+GGG | + | tig0038342:17504-17523 | None:intergenic | 25.0% |
| ! | CTTTAAACATAAAGGGAAAA+GGG | + | tig0038342:17505-17524 | None:intergenic | 25.0% |
| ! | TCTTTAAACATAAAGGGAAA+AGG | + | tig0038342:17506-17525 | None:intergenic | 25.0% |
| ! | ATTTATCAGACGAATGTAAT+AGG | + | tig0038342:17589-17608 | None:intergenic | 25.0% |
| ! | ATCAACATCATAGATTGAAA+AGG | + | tig0038342:17919-17938 | None:intergenic | 25.0% |
| !!! | TACTTAACTTGCTTTTCTTT+TGG | - | tig0038342:17939-17958 | Msa1457080:intron | 25.0% |
| ! | GAAATATGTGGTAAAGTAAA+AGG | - | tig0038342:17987-18006 | Msa1457080:intron | 25.0% |
| ! | TAGAAAAGTGAATATAAGTC+AGG | + | tig0038342:18191-18210 | None:intergenic | 25.0% |
| !!! | TCATTTTAACTTGTAGGTTA+TGG | - | tig0038342:18222-18241 | Msa1457080:CDS | 25.0% |
| !!! | GAGAATTCTTCACTTTTTTT+GGG | - | tig0038342:18473-18492 | Msa1457080:intron | 25.0% |
| ! | ACTAAAACTCTCCAATATAT+GGG | + | tig0038342:18637-18656 | None:intergenic | 25.0% |
| ! | ATAATAAATCTCATTCAAGG+TGG | - | tig0038342:18667-18686 | Msa1457080:intron | 25.0% |
| ! | TAATAAATCTCATTCAAGGT+GGG | - | tig0038342:18668-18687 | Msa1457080:intron | 25.0% |
| !!! | TTAGATTTTGTTTGAGAGTT+TGG | + | tig0038342:18761-18780 | None:intergenic | 25.0% |
| !! | TTAATAGTTAAGTGGATTCA+AGG | - | tig0038342:19270-19289 | Msa1457080:intron | 25.0% |
| !! | TAATAGTTAAGTGGATTCAA+GGG | - | tig0038342:19271-19290 | Msa1457080:intron | 25.0% |
| !!! | TATGTCTGGTTTTGATAATA+AGG | - | tig0038342:19371-19390 | Msa1457080:intron | 25.0% |
| !! | ATTTAATTTCGATACTCTGT+TGG | + | tig0038342:19743-19762 | None:intergenic | 25.0% |
| !!! | GTCACAACAATATTAGTTTT+TGG | + | tig0038342:19839-19858 | None:intergenic | 25.0% |
| ! | GAGAAATGTTTCGTATTAAT+TGG | + | tig0038342:19898-19917 | None:intergenic | 25.0% |
| ! | CGAAAATCGTTTATAACTAA+TGG | - | tig0038342:20113-20132 | Msa1457080:intron | 25.0% |
| ! | TAATCTTGGATTTACTGTTA+CGG | - | tig0038342:20348-20367 | Msa1457080:intron | 25.0% |
| !!! | ATTTTTCAATGTTTGCATCA+GGG | - | tig0038342:20521-20540 | Msa1457080:intron | 25.0% |
| ! | TATATGTTCTTGAACAAAAC+CGG | + | tig0038342:20616-20635 | None:intergenic | 25.0% |
| ! | TGCTTTCAAATATTACAAAC+AGG | - | tig0038342:20719-20738 | Msa1457080:intron | 25.0% |
| ! | TTTCATATATGTTATTGTGC+AGG | - | tig0038342:20898-20917 | Msa1457080:CDS | 25.0% |
| ! | GCTAATAGAAATACCATAAA+GGG | - | tig0038342:21049-21068 | Msa1457080:CDS | 25.0% |
| ! | ATTCACTGATGAATATAGTT+TGG | - | tig0038342:21102-21121 | Msa1457080:CDS | 25.0% |
| ! | TTGTTTGTTCATATATCACA+AGG | - | tig0038342:21341-21360 | Msa1457080:five_prime_UTR | 25.0% |
| ! | TTTCAAAATGTAGACTACTA+TGG | - | tig0038342:21455-21474 | Msa1457080:intron | 25.0% |
| ! | ATGTACTTGGAAAAATTCTT+TGG | + | tig0038342:21522-21541 | None:intergenic | 25.0% |
| !! | AATTTTTCCAAGTACATTAC+AGG | - | tig0038342:21525-21544 | Msa1457080:intron | 25.0% |
| !! | ATTTTTCCAAGTACATTACA+GGG | - | tig0038342:21526-21545 | Msa1457080:intron | 25.0% |
| ! | TACAAACAGTTATATCAATC+TGG | + | tig0038342:21600-21619 | None:intergenic | 25.0% |
| CAATAATTTGGAGATGCAAT+TGG | + | tig0038342:14261-14280 | None:intergenic | 30.0% | |
| CATGAGATCCAAGAATATAT+TGG | + | tig0038342:14290-14309 | None:intergenic | 30.0% | |
| CAATATATTCTTGGATCTCA+TGG | - | tig0038342:14288-14307 | Msa1457080:three_prime_UTR | 30.0% | |
| CTCTTACTCTCAGTTAAAAA+AGG | + | tig0038342:14542-14561 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAACTGAGAGTAAG+AGG | - | tig0038342:14540-14559 | Msa1457080:three_prime_UTR | 30.0% |
| !!! | CAATGAATTCGTTTTGAAGA+AGG | - | tig0038342:14990-15009 | Msa1457080:CDS | 30.0% |
| !! | GTTGTTTTCATAAGTTATCC+TGG | - | tig0038342:15422-15441 | Msa1457080:CDS | 30.0% |
| !!! | GTTATTTTTATAAGCTGTCC+AGG | + | tig0038342:15443-15462 | None:intergenic | 30.0% |
| AATCAGATATAGGGAATGTT+TGG | + | tig0038342:15564-15583 | None:intergenic | 30.0% | |
| CTATATCGTACTTCTTTAGT+TGG | - | tig0038342:15644-15663 | Msa1457080:CDS | 30.0% | |
| ! | ACTAATGTTGGTGAATTTGA+TGG | - | tig0038342:15715-15734 | Msa1457080:CDS | 30.0% |
| CGAGATTGCTTAAATCTAAA+GGG | + | tig0038342:15841-15860 | None:intergenic | 30.0% | |
| GGAGAGAAACTTATATAAGT+CGG | + | tig0038342:15986-16005 | None:intergenic | 30.0% | |
| !! | CATATTTTTAAGGACATGCA+AGG | + | tig0038342:16064-16083 | None:intergenic | 30.0% |
| TGAATTCTCATTAGACGTTA+GGG | - | tig0038342:16322-16341 | Msa1457080:intron | 30.0% | |
| ACGATCTAGTAAAGAGAAAA+GGG | + | tig0038342:16378-16397 | None:intergenic | 30.0% | |
| !!! | GATTTGCACATTTGTTTTGA+AGG | + | tig0038342:16529-16548 | None:intergenic | 30.0% |
| TGAATGATTCATGGATACTT+TGG | + | tig0038342:16875-16894 | None:intergenic | 30.0% | |
| ATAACAAAAGACACACACAT+AGG | - | tig0038342:16947-16966 | Msa1457080:CDS | 30.0% | |
| !! | TAGTGTGGTCTTTTGTTATA+TGG | + | tig0038342:16985-17004 | None:intergenic | 30.0% |
| !! | ATAACATTGATAGTGTAGTG+TGG | + | tig0038342:17000-17019 | None:intergenic | 30.0% |
| !! | TTTTTACTGTACTGATGACA+CGG | + | tig0038342:17163-17182 | None:intergenic | 30.0% |
| ! | TTTGGAGTTGATTCTTTCAA+AGG | + | tig0038342:17196-17215 | None:intergenic | 30.0% |
| GCTAACTTATGATCGTTATT+TGG | + | tig0038342:17214-17233 | None:intergenic | 30.0% | |
| TGCATCTATGATATTCTAAC+CGG | + | tig0038342:17268-17287 | None:intergenic | 30.0% | |
| ! | CTTTTCATATTCCTCTGTTT+TGG | - | tig0038342:17537-17556 | Msa1457080:intron | 30.0% |
| ATAAGAACAAACCAAAACAG+AGG | + | tig0038342:17551-17570 | None:intergenic | 30.0% | |
| !! | AAAAAGGGTATCATATTCGA+TGG | - | tig0038342:17714-17733 | Msa1457080:intron | 30.0% |
| AGAGACAAATACGTGAAAAT+GGG | + | tig0038342:17888-17907 | None:intergenic | 30.0% | |
| ATCATAGATTGAAAAGGAGA+TGG | + | tig0038342:17913-17932 | None:intergenic | 30.0% | |
| ! | CACATTTTGAATGCAAACTA+TGG | - | tig0038342:18059-18078 | Msa1457080:intron | 30.0% |
| ATAGAAGTTATTCGAGCTAA+GGG | - | tig0038342:18085-18104 | Msa1457080:intron | 30.0% | |
| !!! | TTGCTCTCATTTTAACTTGT+AGG | - | tig0038342:18216-18235 | Msa1457080:CDS | 30.0% |
| !! | GTTATGGTTTGTTTGTTATC+TGG | - | tig0038342:18238-18257 | Msa1457080:CDS | 30.0% |
| !!! | TTGTTTGTTATCTGGTCTTT+TGG | - | tig0038342:18246-18265 | Msa1457080:CDS | 30.0% |
| !!! | TGTTTGTTATCTGGTCTTTT+GGG | - | tig0038342:18247-18266 | Msa1457080:CDS | 30.0% |
| !! | TGCTAGTTTACTGAGATTTT+TGG | - | tig0038342:18382-18401 | Msa1457080:intron | 30.0% |
| !!! | GGAGAATTCTTCACTTTTTT+TGG | - | tig0038342:18472-18491 | Msa1457080:intron | 30.0% |
| !! | TTTTGGGAGAATGTTTTTGA+AGG | - | tig0038342:18489-18508 | Msa1457080:intron | 30.0% |
| !! | TTTGGGAGAATGTTTTTGAA+GGG | - | tig0038342:18490-18509 | Msa1457080:intron | 30.0% |
| GACTAAAACTCTCCAATATA+TGG | + | tig0038342:18638-18657 | None:intergenic | 30.0% | |
| AATAAATCTCATTCAAGGTG+GGG | - | tig0038342:18669-18688 | Msa1457080:intron | 30.0% | |
| !! | ATTTTGTTTGAGAGTTTGGA+GGG | + | tig0038342:18757-18776 | None:intergenic | 30.0% |
| AAATGACTAGTATAGCAAAG+GGG | + | tig0038342:18884-18903 | None:intergenic | 30.0% | |
| GAAATGACTAGTATAGCAAA+GGG | + | tig0038342:18885-18904 | None:intergenic | 30.0% | |
| AGAAATGACTAGTATAGCAA+AGG | + | tig0038342:18886-18905 | None:intergenic | 30.0% | |
| TCAGTTGTAATGTTATCGTT+AGG | - | tig0038342:18948-18967 | Msa1457080:intron | 30.0% | |
| ACATATCTGAGGATAATAGT+GGG | - | tig0038342:19010-19029 | Msa1457080:intron | 30.0% | |
| ATGATGGCTTAATAGTTAAG+TGG | - | tig0038342:19262-19281 | Msa1457080:intron | 30.0% | |
| GATATAGCGGTAAATTACAA+AGG | - | tig0038342:19298-19317 | Msa1457080:intron | 30.0% | |
| ! | GTTTTGCTTATACTCTTTGA+CGG | - | tig0038342:19399-19418 | Msa1457080:intron | 30.0% |
| CCAAATCAAATTGGAGAAAA+TGG | + | tig0038342:19462-19481 | None:intergenic | 30.0% | |
| ! | CCATTTTCTCCAATTTGATT+TGG | - | tig0038342:19459-19478 | Msa1457080:intron | 30.0% |
| CATTCATTACTAGATGAGTT+TGG | - | tig0038342:19812-19831 | Msa1457080:intron | 30.0% | |
| ACGAAACATTTCTCTCTATA+CGG | - | tig0038342:19904-19923 | Msa1457080:intron | 30.0% | |
| ATAATATCTTGGGACTAAGA+AGG | + | tig0038342:19967-19986 | None:intergenic | 30.0% | |
| GATATTTAGCAATTAGTGTG+CGG | - | tig0038342:20064-20083 | Msa1457080:intron | 30.0% | |
| ATATTTAGCAATTAGTGTGC+GGG | - | tig0038342:20065-20084 | Msa1457080:intron | 30.0% | |
| ATTGAAACTAGAACAAGTTC+AGG | + | tig0038342:20280-20299 | None:intergenic | 30.0% | |
| !! | GTTCTAGTTTCAATTGATTC+AGG | - | tig0038342:20286-20305 | Msa1457080:intron | 30.0% |
| GTTGTGTCAATCATTAATCT+TGG | - | tig0038342:20334-20353 | Msa1457080:intron | 30.0% | |
| CTGCACATATATTCTATTTC+TGG | - | tig0038342:20427-20446 | Msa1457080:intron | 30.0% | |
| GATGCAAACATTGAAAAATC+TGG | + | tig0038342:20520-20539 | None:intergenic | 30.0% | |
| !! | GATTTTTCAATGTTTGCATC+AGG | - | tig0038342:20520-20539 | Msa1457080:intron | 30.0% |
| !! | TTTTTCAATGTTTGCATCAG+GGG | - | tig0038342:20522-20541 | Msa1457080:intron | 30.0% |
| !! | TACTAGTACTACTTTTGAAC+CGG | - | tig0038342:20594-20613 | Msa1457080:intron | 30.0% |
| GGCTAATAGAAATACCATAA+AGG | - | tig0038342:21048-21067 | Msa1457080:CDS | 30.0% | |
| !!! | TCTTCATCAGTTTTGACTTT+TGG | + | tig0038342:21251-21270 | None:intergenic | 30.0% |
| AAAAGTCAAAACTGATGAAG+AGG | - | tig0038342:21250-21269 | Msa1457080:CDS | 30.0% | |
| AAAGTCAAAACTGATGAAGA+GGG | - | tig0038342:21251-21270 | Msa1457080:CDS | 30.0% | |
| ACTACTCACAACAAGAAAAA+TGG | + | tig0038342:21428-21447 | None:intergenic | 30.0% | |
| AAAAATTCTTTGGACAACTC+TGG | + | tig0038342:21512-21531 | None:intergenic | 30.0% | |
| AAACCAAAATGAGAACATCA+GGG | + | tig0038342:21574-21593 | None:intergenic | 30.0% | |
| AAAACCAAAATGAGAACATC+AGG | + | tig0038342:21575-21594 | None:intergenic | 30.0% | |
| TAGATATTTGTGAGCGAAAG+TGG | - | tig0038342:14572-14591 | Msa1457080:three_prime_UTR | 35.0% | |
| AGATATTTGTGAGCGAAAGT+GGG | - | tig0038342:14573-14592 | Msa1457080:three_prime_UTR | 35.0% | |
| ATTCATCATGATAACCGATC+TGG | + | tig0038342:14839-14858 | None:intergenic | 35.0% | |
| ! | ATACATAAAAGCGCGAACAA+AGG | + | tig0038342:15106-15125 | None:intergenic | 35.0% |
| ATCATGGCTATGTCATTCTT+TGG | - | tig0038342:15287-15306 | Msa1457080:intron | 35.0% | |
| CTATGTCATTCTTTGGACTT+TGG | - | tig0038342:15294-15313 | Msa1457080:intron | 35.0% | |
| ACTGTGATCAATTTCTGCAA+TGG | - | tig0038342:15675-15694 | Msa1457080:CDS | 35.0% | |
| GATCAATTTCTGCAATGGAT+AGG | - | tig0038342:15680-15699 | Msa1457080:CDS | 35.0% | |
| AATTTCTGCAATGGATAGGT+GGG | - | tig0038342:15684-15703 | Msa1457080:CDS | 35.0% | |
| GTTGTGCTTATAAACCTACA+AGG | - | tig0038342:15758-15777 | Msa1457080:CDS | 35.0% | |
| GATTGCTTAAATCTAAAGGG+AGG | + | tig0038342:15838-15857 | None:intergenic | 35.0% | |
| GCGAGATTGCTTAAATCTAA+AGG | + | tig0038342:15842-15861 | None:intergenic | 35.0% | |
| TTAGATTTAAGCAATCTCGC+AGG | - | tig0038342:15842-15861 | Msa1457080:intron | 35.0% | |
| ! | TCTCCATGCATTTTTGTGAA+GGG | - | tig0038342:16001-16020 | Msa1457080:intron | 35.0% |
| TTTCCCTTCACAAAAATGCA+TGG | + | tig0038342:16007-16026 | None:intergenic | 35.0% | |
| ! | CACTGGTTGTTTGAGTTTAT+TGG | - | tig0038342:16188-16207 | Msa1457080:intron | 35.0% |
| ! | GTTGTTTGAGTTTATTGGAG+TGG | - | tig0038342:16193-16212 | Msa1457080:intron | 35.0% |
| GTTCTCATTAGATGTTGTGT+TGG | + | tig0038342:16243-16262 | None:intergenic | 35.0% | |
| CTGAATTCTCATTAGACGTT+AGG | - | tig0038342:16321-16340 | Msa1457080:intron | 35.0% | |
| ATTAGACGTTAGGGTAAAAC+TGG | - | tig0038342:16331-16350 | Msa1457080:intron | 35.0% | |
| TTAGACGTTAGGGTAAAACT+GGG | - | tig0038342:16332-16351 | Msa1457080:intron | 35.0% | |
| CGATCTAGTAAAGAGAAAAG+GGG | + | tig0038342:16377-16396 | None:intergenic | 35.0% | |
| GACGATCTAGTAAAGAGAAA+AGG | + | tig0038342:16379-16398 | None:intergenic | 35.0% | |
| AAAAATGTATATGACCCGTG+CGG | + | tig0038342:16413-16432 | None:intergenic | 35.0% | |
| GGATCCTTCTTGTATCATTA+CGG | - | tig0038342:16776-16795 | Msa1457080:CDS | 35.0% | |
| TCATCCGTAATGATACAAGA+AGG | + | tig0038342:16783-16802 | None:intergenic | 35.0% | |
| ATATGTGTGTGTCTTGAACT+GGG | + | tig0038342:16929-16948 | None:intergenic | 35.0% | |
| TATATGTGTGTGTCTTGAAC+TGG | + | tig0038342:16930-16949 | None:intergenic | 35.0% | |
| ! | TTTGTTATATGGAGTGTACC+AGG | + | tig0038342:16974-16993 | None:intergenic | 35.0% |
| AATTGCACCATGAAATTGGA+GGG | + | tig0038342:17097-17116 | None:intergenic | 35.0% | |
| CAATTTCATGGTGCAATTCA+GGG | - | tig0038342:17099-17118 | Msa1457080:intron | 35.0% | |
| !! | TTTTACTGTACTGATGACAC+GGG | + | tig0038342:17162-17181 | None:intergenic | 35.0% |
| TGATTCTTTCAAAGGACACA+AGG | + | tig0038342:17188-17207 | None:intergenic | 35.0% | |
| ! | TGATGTACAATCGGATTTTC+TGG | + | tig0038342:17338-17357 | None:intergenic | 35.0% |
| AAGTGAGGATGATGTACAAT+CGG | + | tig0038342:17347-17366 | None:intergenic | 35.0% | |
| TGAATTCTCATTAGACGTCA+GGG | - | tig0038342:17449-17468 | Msa1457080:intron | 35.0% | |
| GTTACAAATTTACTGCCATC+TGG | + | tig0038342:17681-17700 | None:intergenic | 35.0% | |
| !! | AACCGTTAGTTCTGACAAAA+AGG | - | tig0038342:17698-17717 | Msa1457080:intron | 35.0% |
| !! | ACCGTTAGTTCTGACAAAAA+GGG | - | tig0038342:17699-17718 | Msa1457080:intron | 35.0% |
| ! | ACCCTTTTTGTCAGAACTAA+CGG | + | tig0038342:17703-17722 | None:intergenic | 35.0% |
| ATCATATTCGATGGAAAGAC+TGG | - | tig0038342:17723-17742 | Msa1457080:intron | 35.0% | |
| !! | TAGCTTACTTGTTTTCCATC+AGG | + | tig0038342:17816-17835 | None:intergenic | 35.0% |
| ! | TTTATTGATTATGGCAGGTC+TGG | - | tig0038342:17850-17869 | Msa1457080:intron | 35.0% |
| GAGAGACAAATACGTGAAAA+TGG | + | tig0038342:17889-17908 | None:intergenic | 35.0% | |
| CATAGAAGTTATTCGAGCTA+AGG | - | tig0038342:18084-18103 | Msa1457080:intron | 35.0% | |
| !!! | ATTTTTGGCACAACAGTCTA+AGG | - | tig0038342:18397-18416 | Msa1457080:intron | 35.0% |
| !!! | AACAGTCTAAGGCTTTGTTT+TGG | - | tig0038342:18408-18427 | Msa1457080:intron | 35.0% |
| !!! | TAAGGCTTTGTTTTGGAGTT+TGG | - | tig0038342:18415-18434 | Msa1457080:intron | 35.0% |
| ! | GAACTCCAAAAGTACATTGA+CGG | + | tig0038342:18615-18634 | None:intergenic | 35.0% |
| !!! | CTTTTGGAGTTCCCATATAT+TGG | - | tig0038342:18623-18642 | Msa1457080:intron | 35.0% |
| ATAAATCTCATTCAAGGTGG+GGG | - | tig0038342:18670-18689 | Msa1457080:intron | 35.0% | |
| GAAGATAAAGGAGGAGTAAA+GGG | + | tig0038342:18716-18735 | None:intergenic | 35.0% | |
| TGAAGATAAAGGAGGAGTAA+AGG | + | tig0038342:18717-18736 | None:intergenic | 35.0% | |
| !! | GATTTTGTTTGAGAGTTTGG+AGG | + | tig0038342:18758-18777 | None:intergenic | 35.0% |
| AATGACTAGTATAGCAAAGG+GGG | + | tig0038342:18883-18902 | None:intergenic | 35.0% | |
| TGAAGATCAGATGTCTAACA+GGG | + | tig0038342:18931-18950 | None:intergenic | 35.0% | |
| ! | TGACAAGTCTGCAAAAGTAT+GGG | - | tig0038342:18987-19006 | Msa1457080:intron | 35.0% |
| ! | AAAAGTATGGGACATATCTG+AGG | - | tig0038342:18999-19018 | Msa1457080:intron | 35.0% |
| GACATATCTGAGGATAATAG+TGG | - | tig0038342:19009-19028 | Msa1457080:intron | 35.0% | |
| ! | TATCTTGTCACTGTTTCTCT+TGG | - | tig0038342:19111-19130 | Msa1457080:intron | 35.0% |
| ATATGTCCTGAAAACGATGT+CGG | + | tig0038342:19180-19199 | None:intergenic | 35.0% | |
| ! | GTTACTTCTGAGAATGGTTA+AGG | + | tig0038342:19217-19236 | None:intergenic | 35.0% |
| ATTCAAGGGATTGGATATAG+CGG | - | tig0038342:19285-19304 | Msa1457080:intron | 35.0% | |
| TAGCGGTAAATTACAAAGGA+AGG | - | tig0038342:19302-19321 | Msa1457080:intron | 35.0% | |
| GAAGAAGAGATTGTTATGTC+TGG | - | tig0038342:19357-19376 | Msa1457080:intron | 35.0% | |
| TTAAATGCAAACGACAAGCA+AGG | + | tig0038342:19498-19517 | None:intergenic | 35.0% | |
| CGAAACATTTCTCTCTATAC+GGG | - | tig0038342:19905-19924 | Msa1457080:intron | 35.0% | |
| ATGCATGTCTTGATATTACG+TGG | - | tig0038342:20008-20027 | Msa1457080:intron | 35.0% | |
| AAAGGAAATGAAGGAGTAAG+AGG | + | tig0038342:20145-20164 | None:intergenic | 35.0% | |
| ACAGAAGAGAAAGGAAATGA+AGG | + | tig0038342:20154-20173 | None:intergenic | 35.0% | |
| ATCTAGTTGACAGAAGAGAA+AGG | + | tig0038342:20163-20182 | None:intergenic | 35.0% | |
| TCTCTTCTGTCAACTAGATA+AGG | - | tig0038342:20164-20183 | Msa1457080:CDS | 35.0% | |
| AGTGCAACACTAAAATCCTT+TGG | + | tig0038342:20250-20269 | None:intergenic | 35.0% | |
| TTAATCGAGAAGCTGTTGTT+TGG | - | tig0038342:20548-20567 | Msa1457080:intron | 35.0% | |
| ! | TAATCGAGAAGCTGTTGTTT+GGG | - | tig0038342:20549-20568 | Msa1457080:intron | 35.0% |
| TAGTACTAGTACTCACATCT+CGG | + | tig0038342:20585-20604 | None:intergenic | 35.0% | |
| CAGGAAACAAAGTGAAAACA+CGG | - | tig0038342:20738-20757 | Msa1457080:intron | 35.0% | |
| TCGTTATTTAAAGGTCAGCT+TGG | + | tig0038342:20807-20826 | None:intergenic | 35.0% | |
| ! | TATTTCTATTAGCCACAGGT+TGG | + | tig0038342:21042-21061 | None:intergenic | 35.0% |
| ! | ATGGTATTTCTATTAGCCAC+AGG | + | tig0038342:21046-21065 | None:intergenic | 35.0% |
| ! | GAATATAGTTTGGTTAGCTC+AGG | - | tig0038342:21112-21131 | Msa1457080:CDS | 35.0% |
| CCTTTACAACTTGATCTTCA+CGG | + | tig0038342:21175-21194 | None:intergenic | 35.0% | |
| ! | CGTGAAGATCAAGTTGTAAA+GGG | - | tig0038342:21173-21192 | Msa1457080:CDS | 35.0% |
| ! | ATCAAGTTGTAAAGGGAAAG+TGG | - | tig0038342:21180-21199 | Msa1457080:CDS | 35.0% |
| ! | TCAAGTTGTAAAGGGAAAGT+GGG | - | tig0038342:21181-21200 | Msa1457080:CDS | 35.0% |
| !!! | GACTTTTGGAAGCATTGTAT+AGG | + | tig0038342:21237-21256 | None:intergenic | 35.0% |
| ! | CAAAAGCTCACTTGTCTTTT+AGG | + | tig0038342:21313-21332 | None:intergenic | 35.0% |
| ! | CTATTGATTGTGCGATATGA+AGG | - | tig0038342:21402-21421 | Msa1457080:intron | 35.0% |
| TTGATTCCCTGTAATGTACT+TGG | + | tig0038342:21535-21554 | None:intergenic | 35.0% | |
| ! | AATCCCTGATGTTCTCATTT+TGG | - | tig0038342:21568-21587 | Msa1457080:intron | 35.0% |
| TCTCTCTTTCAAGATGAGCT+CGG | - | tig0038342:14711-14730 | Msa1457080:three_prime_UTR | 40.0% | |
| ! | ATTTTCACCCAACGGTGAAT+GGG | - | tig0038342:14921-14940 | Msa1457080:CDS | 40.0% |
| AAGGAGTTTCGTGTTCTTTC+TGG | - | tig0038342:15009-15028 | Msa1457080:CDS | 40.0% | |
| AGTTTCGTGTTCTTTCTGGA+AGG | - | tig0038342:15013-15032 | Msa1457080:CDS | 40.0% | |
| CAATTTCTGCAATGGATAGG+TGG | - | tig0038342:15683-15702 | Msa1457080:CDS | 40.0% | |
| AACTCAAAACTCGTCTTGAG+TGG | + | tig0038342:15741-15760 | None:intergenic | 40.0% | |
| TTTAAGCAATCTCGCAGGTA+TGG | - | tig0038342:15847-15866 | Msa1457080:intron | 40.0% | |
| GTATGGTGTGAGAAACTCAA+TGG | - | tig0038342:15864-15883 | Msa1457080:intron | 40.0% | |
| ! | CTCTCCATGCATTTTTGTGA+AGG | - | tig0038342:16000-16019 | Msa1457080:intron | 40.0% |
| !! | AAATTGGTGCTACAGCAGTT+GGG | + | tig0038342:17041-17060 | None:intergenic | 40.0% |
| !! | AAAATTGGTGCTACAGCAGT+TGG | + | tig0038342:17042-17061 | None:intergenic | 40.0% |
| ATTGCACCATGAAATTGGAG+GGG | + | tig0038342:17096-17115 | None:intergenic | 40.0% | |
| GAATTGCACCATGAAATTGG+AGG | + | tig0038342:17098-17117 | None:intergenic | 40.0% | |
| CCTGAATTGCACCATGAAAT+TGG | + | tig0038342:17101-17120 | None:intergenic | 40.0% | |
| CCAATTTCATGGTGCAATTC+AGG | - | tig0038342:17098-17117 | Msa1457080:intron | 40.0% | |
| TAAGTTAGCGTCTGTGATGA+AGG | - | tig0038342:17225-17244 | Msa1457080:intron | 40.0% | |
| ! | TGGCAATGATGAGGATTTTC+TGG | + | tig0038342:17384-17403 | None:intergenic | 40.0% |
| CTGAATTCTCATTAGACGTC+AGG | - | tig0038342:17448-17467 | Msa1457080:intron | 40.0% | |
| ATTAGACGTCAGGGTAAAAC+TGG | - | tig0038342:17458-17477 | Msa1457080:intron | 40.0% | |
| TTAGACGTCAGGGTAAAACT+GGG | - | tig0038342:17459-17478 | Msa1457080:intron | 40.0% | |
| TGTGTGAGATATTCTCCAGA+TGG | - | tig0038342:17663-17682 | Msa1457080:intron | 40.0% | |
| ATCGGTGAGTTATCTTCTGA+AGG | - | tig0038342:17753-17772 | Msa1457080:intron | 40.0% | |
| CAGCATAAATACTGCCAGTA+TGG | + | tig0038342:17782-17801 | None:intergenic | 40.0% | |
| GCAGTATTTATGCTGTTAGC+TGG | - | tig0038342:17787-17806 | Msa1457080:intron | 40.0% | |
| AGTTATTCGAGCTAAGGGAT+AGG | - | tig0038342:18090-18109 | Msa1457080:intron | 40.0% | |
| ! | TCCAAAAGTACATTGACGGA+GGG | + | tig0038342:18611-18630 | None:intergenic | 40.0% |
| TAAAGGAGGAGTAAAGGGAA+GGG | + | tig0038342:18711-18730 | None:intergenic | 40.0% | |
| ATAAAGGAGGAGTAAAGGGA+AGG | + | tig0038342:18712-18731 | None:intergenic | 40.0% | |
| CTGAAGATCAGATGTCTAAC+AGG | + | tig0038342:18932-18951 | None:intergenic | 40.0% | |
| CTGACAAGTCTGCAAAAGTA+TGG | - | tig0038342:18986-19005 | Msa1457080:intron | 40.0% | |
| ! | ATCTGAGGATAATAGTGGGA+AGG | - | tig0038342:19014-19033 | Msa1457080:intron | 40.0% |
| !! | ACATTGATTTGTTCTGCCTC+TGG | - | tig0038342:19045-19064 | Msa1457080:intron | 40.0% |
| GAGTTGAAGACATGCTTGTA+GGG | - | tig0038342:19070-19089 | Msa1457080:intron | 40.0% | |
| CAAGATAATCGTTCAACCAC+AGG | + | tig0038342:19098-19117 | None:intergenic | 40.0% | |
| ! | TTGTCACTGTTTCTCTTGGT+GGG | - | tig0038342:19115-19134 | Msa1457080:intron | 40.0% |
| TATGTCCTGAAAACGATGTC+GGG | + | tig0038342:19179-19198 | None:intergenic | 40.0% | |
| ! | ACTTCTGAGAATGGTTAAGG+AGG | + | tig0038342:19214-19233 | None:intergenic | 40.0% |
| ! | TCTAGGGTTACTTCTGAGAA+TGG | + | tig0038342:19223-19242 | None:intergenic | 40.0% |
| ! | GTTAAGTGGATTCAAGGGAT+TGG | - | tig0038342:19276-19295 | Msa1457080:intron | 40.0% |
| AGTGCTTCATGGAGATTTCT+AGG | + | tig0038342:19595-19614 | None:intergenic | 40.0% | |
| ! | AGAAATCTCCATGAAGCACT+TGG | - | tig0038342:19595-19614 | Msa1457080:intron | 40.0% |
| CACACGAGACAATTTCTGAT+TGG | - | tig0038342:19697-19716 | Msa1457080:intron | 40.0% | |
| CTTCTGTCAACTAGATAAGG+CGG | - | tig0038342:20167-20186 | Msa1457080:CDS | 40.0% | |
| TTCTGTCAACTAGATAAGGC+GGG | - | tig0038342:20168-20187 | Msa1457080:CDS | 40.0% | |
| ! | ATAAGGCGGGTTTCTTTACA+TGG | - | tig0038342:20181-20200 | Msa1457080:CDS | 40.0% |
| ! | TAAGGCGGGTTTCTTTACAT+GGG | - | tig0038342:20182-20201 | Msa1457080:CDS | 40.0% |
| GATGCTGAAGCCATTGATAT+CGG | - | tig0038342:20217-20236 | Msa1457080:CDS | 40.0% | |
| ! | TGGTTGACTTCCGATATCAA+TGG | + | tig0038342:20230-20249 | None:intergenic | 40.0% |
| TGATATCGGAAGTCAACCAA+AGG | - | tig0038342:20231-20250 | Msa1457080:CDS | 40.0% | |
| GATGGAAGTGAAGCCATTAT+TGG | - | tig0038342:20388-20407 | Msa1457080:intron | 40.0% | |
| AGACTGTCCTTGAGAAACAT+AGG | - | tig0038342:20467-20486 | Msa1457080:intron | 40.0% | |
| GACTGTCCTTGAGAAACATA+GGG | - | tig0038342:20468-20487 | Msa1457080:intron | 40.0% | |
| ACTGTCCTTGAGAAACATAG+GGG | - | tig0038342:20469-20488 | Msa1457080:intron | 40.0% | |
| AGTACTAGTACTCACATCTC+GGG | + | tig0038342:20584-20603 | None:intergenic | 40.0% | |
| GACAATTTATCCGTGCAGTA+TGG | + | tig0038342:20946-20965 | None:intergenic | 40.0% | |
| CACGGATAAATTGTCTTGCT+TGG | - | tig0038342:20951-20970 | Msa1457080:CDS | 40.0% | |
| TAGCAATCCTACTGCTATCA+GGG | + | tig0038342:20979-20998 | None:intergenic | 40.0% | |
| ATATGAGATTGACCAACCTG+TGG | - | tig0038342:21027-21046 | Msa1457080:CDS | 40.0% | |
| TACAACTTGATCTTCACGGA+GGG | + | tig0038342:21171-21190 | None:intergenic | 40.0% | |
| TTACAACTTGATCTTCACGG+AGG | + | tig0038342:21172-21191 | None:intergenic | 40.0% | |
| ! | CCGTGAAGATCAAGTTGTAA+AGG | - | tig0038342:21172-21191 | Msa1457080:CDS | 40.0% |
| TTATCACCCCAAGTTAGAGA+GGG | - | tig0038342:21280-21299 | Msa1457080:five_prime_UTR | 40.0% | |
| AAACATCCCCTCTCTAACTT+GGG | + | tig0038342:21290-21309 | None:intergenic | 40.0% | |
| CGTCAAAACTGTTAACCGCT+AGG | + | tig0038342:14332-14351 | None:intergenic | 45.0% | |
| AATGCAGTGCACGATGATGA+TGG | + | tig0038342:14690-14709 | None:intergenic | 45.0% | |
| ! | GTAGGTGATGGTGTTGGATT+TGG | + | tig0038342:14809-14828 | None:intergenic | 45.0% |
| ! | ATTGGTGTAGGTGATGGTGT+TGG | + | tig0038342:14815-14834 | None:intergenic | 45.0% |
| CATGATAACCGATCTGGCAT+TGG | + | tig0038342:14833-14852 | None:intergenic | 45.0% | |
| GTAAGCATGTTCGCCATAGA+CGG | + | tig0038342:14884-14903 | None:intergenic | 45.0% | |
| ! | GATTTTCACCCAACGGTGAA+TGG | - | tig0038342:14920-14939 | Msa1457080:CDS | 45.0% |
| GAAGGATCGATGATCTTCAG+TGG | - | tig0038342:15031-15050 | Msa1457080:CDS | 45.0% | |
| GCGACAATTCTGATACCATC+AGG | + | tig0038342:15060-15079 | None:intergenic | 45.0% | |
| ! | GGTATCAGAATTGTCGCTTC+TGG | - | tig0038342:15063-15082 | Msa1457080:intron | 45.0% |
| CAATGGATAGGTGGGATTCT+GGG | - | tig0038342:15692-15711 | Msa1457080:CDS | 45.0% | |
| !! | TGGGATTCTGGGACTAATGT+TGG | - | tig0038342:15703-15722 | Msa1457080:CDS | 45.0% |
| ! | ACAATGCGAAAAGGCCTTGT+AGG | + | tig0038342:15775-15794 | None:intergenic | 45.0% |
| GACAAGAAAATCCTCTCCAC+AGG | + | tig0038342:15800-15819 | None:intergenic | 45.0% | |
| TGGTGTGAGAAACTCAATGG+CGG | - | tig0038342:15867-15886 | Msa1457080:intron | 45.0% | |
| AAAGACACACACATAGGACC+TGG | - | tig0038342:16953-16972 | Msa1457080:CDS | 45.0% | |
| TCTAACCCCCTCCAATTTCA+TGG | - | tig0038342:17087-17106 | Msa1457080:intron | 45.0% | |
| TTGCACCATGAAATTGGAGG+GGG | + | tig0038342:17095-17114 | None:intergenic | 45.0% | |
| GGAAAGACTGGAGAGAAGAT+CGG | - | tig0038342:17735-17754 | Msa1457080:intron | 45.0% | |
| ! | GGTGAGTTATCTTCTGAAGG+TGG | - | tig0038342:17756-17775 | Msa1457080:intron | 45.0% |
| !!! | GGCTTTGTTTTGGAGTTTGG+AGG | - | tig0038342:18418-18437 | Msa1457080:intron | 45.0% |
| TGGAGTTTGGAGGAAAACAG+TGG | - | tig0038342:18428-18447 | Msa1457080:intron | 45.0% | |
| GGAGTTTGGAGGAAAACAGT+GGG | - | tig0038342:18429-18448 | Msa1457080:intron | 45.0% | |
| TTTGGAGGAAAACAGTGGGA+GGG | - | tig0038342:18433-18452 | Msa1457080:intron | 45.0% | |
| ! | CTCCAAAAGTACATTGACGG+AGG | + | tig0038342:18612-18631 | None:intergenic | 45.0% |
| TGTTTGAGAGTTTGGAGGGA+GGG | + | tig0038342:18753-18772 | None:intergenic | 45.0% | |
| TTGTTTGAGAGTTTGGAGGG+AGG | + | tig0038342:18754-18773 | None:intergenic | 45.0% | |
| !! | TTGATTTGTTCTGCCTCTGG+TGG | - | tig0038342:19048-19067 | Msa1457080:intron | 45.0% |
| GGAGTTGAAGACATGCTTGT+AGG | - | tig0038342:19069-19088 | Msa1457080:intron | 45.0% | |
| ! | CTTGTCACTGTTTCTCTTGG+TGG | - | tig0038342:19114-19133 | Msa1457080:intron | 45.0% |
| ATGTCCTGAAAACGATGTCG+GGG | + | tig0038342:19178-19197 | None:intergenic | 45.0% | |
| AGTGTGCGGGACAAATTTCA+TGG | - | tig0038342:20078-20097 | Msa1457080:intron | 45.0% | |
| ! | AAGGCGGGTTTCTTTACATG+GGG | - | tig0038342:20183-20202 | Msa1457080:CDS | 45.0% |
| TCTTTACATGGGGATCAGTG+CGG | - | tig0038342:20193-20212 | Msa1457080:CDS | 45.0% | |
| GGAAGTGAAGCCATTATTGG+TGG | - | tig0038342:20391-20410 | Msa1457080:intron | 45.0% | |
| ! | TGAAGCCATTATTGGTGGTC+AGG | - | tig0038342:20396-20415 | Msa1457080:intron | 45.0% |
| ACCATCCTGACCACCAATAA+TGG | + | tig0038342:20404-20423 | None:intergenic | 45.0% | |
| TAGCACCCCTATGTTTCTCA+AGG | + | tig0038342:20477-20496 | None:intergenic | 45.0% | |
| ACATGCTGTACCATACTGCA+CGG | - | tig0038342:20933-20952 | Msa1457080:CDS | 45.0% | |
| AGCAATCCTACTGCTATCAG+GGG | + | tig0038342:20978-20997 | None:intergenic | 45.0% | |
| GTAGCAATCCTACTGCTATC+AGG | + | tig0038342:20980-20999 | None:intergenic | 45.0% | |
| GATAGCAGTAGGATTGCTAC+AGG | - | tig0038342:20980-20999 | Msa1457080:CDS | 45.0% | |
| !! | ACCATAAAGGGTGCTCACTT+AGG | - | tig0038342:21061-21080 | Msa1457080:CDS | 45.0% |
| ACCTAAGTGAGCACCCTTTA+TGG | + | tig0038342:21065-21084 | None:intergenic | 45.0% | |
| !! | ATAAAGGGTGCTCACTTAGG+TGG | - | tig0038342:21064-21083 | Msa1457080:CDS | 45.0% |
| !! | TAAAGGGTGCTCACTTAGGT+GGG | - | tig0038342:21065-21084 | Msa1457080:CDS | 45.0% |
| CTCACTTAGGTGGGGTTTAT+GGG | - | tig0038342:21074-21093 | Msa1457080:CDS | 45.0% | |
| ! | AGGATGCTTTTATCCGTGTC+TGG | - | tig0038342:21137-21156 | Msa1457080:CDS | 45.0% |
| ACAACTTGATCTTCACGGAG+GGG | + | tig0038342:21170-21189 | None:intergenic | 45.0% | |
| CTTATCACCCCAAGTTAGAG+AGG | - | tig0038342:21279-21298 | Msa1457080:five_prime_UTR | 45.0% | |
| TATCACCCCAAGTTAGAGAG+GGG | - | tig0038342:21281-21300 | Msa1457080:five_prime_UTR | 45.0% | |
| AACATCCCCTCTCTAACTTG+GGG | + | tig0038342:21289-21308 | None:intergenic | 45.0% | |
| GAAACATCCCCTCTCTAACT+TGG | + | tig0038342:21291-21310 | None:intergenic | 45.0% | |
| !! | TTTATAAAAAAAAAAGTTAT+TGG | + | tig0038342:16479-16498 | None:intergenic | 5.0% |
| !!! | ATATTATTTTTAAAAAAACA+TGG | - | tig0038342:16755-16774 | Msa1457080:CDS | 5.0% |
| !! | GTGCACGATGATGATGGTGA+TGG | + | tig0038342:14684-14703 | None:intergenic | 50.0% |
| CTCTTTCAAGATGAGCTCGG+TGG | - | tig0038342:14714-14733 | Msa1457080:three_prime_UTR | 50.0% | |
| !! | TCTGGCATTGGTGTAGGTGA+TGG | + | tig0038342:14821-14840 | None:intergenic | 50.0% |
| CACCTACACCAATGCCAGAT+CGG | - | tig0038342:14822-14841 | Msa1457080:CDS | 50.0% | |
| !! | AACCGATCTGGCATTGGTGT+AGG | + | tig0038342:14827-14846 | None:intergenic | 50.0% |
| CATAGACGGAGACATGAAGG+GGG | + | tig0038342:14870-14889 | None:intergenic | 50.0% | |
| CCATAGACGGAGACATGAAG+GGG | + | tig0038342:14871-14890 | None:intergenic | 50.0% | |
| GCCATAGACGGAGACATGAA+GGG | + | tig0038342:14872-14891 | None:intergenic | 50.0% | |
| GTTGGGTGAAAATCGAGCGA+CGG | + | tig0038342:14914-14933 | None:intergenic | 50.0% | |
| ! | GTCGCTCGATTTTCACCCAA+CGG | - | tig0038342:14913-14932 | Msa1457080:CDS | 50.0% |
| GATGCAACCCATTCACCGTT+GGG | + | tig0038342:14931-14950 | None:intergenic | 50.0% | |
| AGATGCAACCCATTCACCGT+TGG | + | tig0038342:14932-14951 | None:intergenic | 50.0% | |
| GATCTTCAGTGGTCTCCTGA+TGG | - | tig0038342:15042-15061 | Msa1457080:CDS | 50.0% | |
| GTCGCTTCTGGTGAAGCTAA+AGG | - | tig0038342:15075-15094 | Msa1457080:intron | 50.0% | |
| GCAATGGATAGGTGGGATTC+TGG | - | tig0038342:15691-15710 | Msa1457080:CDS | 50.0% | |
| CCACAGGTGACAATGCGAAA+AGG | + | tig0038342:15784-15803 | None:intergenic | 50.0% | |
| ! | CCTTTTCGCATTGTCACCTG+TGG | - | tig0038342:15781-15800 | Msa1457080:CDS | 50.0% |
| GGTAGCAAAGTGAGCTTACG+TGG | + | tig0038342:16277-16296 | None:intergenic | 50.0% | |
| CTGATGACACGGGACATGTA+TGG | + | tig0038342:17152-17171 | None:intergenic | 50.0% | |
| GAGCTTACGTGGCAATGATG+AGG | + | tig0038342:17393-17412 | None:intergenic | 50.0% | |
| GGTAGCAAAGTGAGCTTACG+TGG | + | tig0038342:16277-16296 | None:intergenic | 50.0% | |
| ! | TCTTCTGAAGGTGGCCATAC+TGG | - | tig0038342:17765-17784 | Msa1457080:intron | 50.0% |
| GTTTGGAGGAAAACAGTGGG+AGG | - | tig0038342:18432-18451 | Msa1457080:intron | 50.0% | |
| TTGGAGGAAAACAGTGGGAG+GGG | - | tig0038342:18434-18453 | Msa1457080:intron | 50.0% | |
| GAGGGGAGGAAAGAAAAGGT+AGG | - | tig0038342:18451-18470 | Msa1457080:intron | 50.0% | |
| AGTACATTGACGGAGGGCTT+TGG | + | tig0038342:18605-18624 | None:intergenic | 50.0% | |
| ! | GCCCTCCGTCAATGTACTTT+TGG | - | tig0038342:18607-18626 | Msa1457080:intron | 50.0% |
| GAGGAGTAAAGGGAAGGGAA+AGG | + | tig0038342:18706-18725 | None:intergenic | 50.0% | |
| !! | GAGGGCTCTGAAGATAAAGG+AGG | + | tig0038342:18725-18744 | None:intergenic | 50.0% |
| GTTTGAGAGTTTGGAGGGAG+GGG | + | tig0038342:18752-18771 | None:intergenic | 50.0% | |
| CATGTCTTCAACTCCACCAG+AGG | + | tig0038342:19064-19083 | None:intergenic | 50.0% | |
| ! | AAAGCCCCGACATCGTTTTC+AGG | - | tig0038342:19171-19190 | Msa1457080:intron | 50.0% |
| CTCTTCTTCTGCAGCTGCTA+AGG | + | tig0038342:19346-19365 | None:intergenic | 50.0% | |
| TGCACTAGCCAAGTGCTTCA+TGG | + | tig0038342:19606-19625 | None:intergenic | 50.0% | |
| GCATCTGTTGTCTCGTCTGA+TGG | - | tig0038342:20370-20389 | Msa1457080:intron | 50.0% | |
| ! | GCCATTATTGGTGGTCAGGA+TGG | - | tig0038342:20400-20419 | Msa1457080:intron | 50.0% |
| ACTAGTACTCACATCTCGGG+AGG | + | tig0038342:20581-20600 | None:intergenic | 50.0% | |
| !! | AAAGGGTGCTCACTTAGGTG+GGG | - | tig0038342:21066-21085 | Msa1457080:CDS | 50.0% |
| GCTCACTTAGGTGGGGTTTA+TGG | - | tig0038342:21073-21092 | Msa1457080:CDS | 50.0% | |
| ! | TAGTTTGGTTAGCTCAGGCG+AGG | - | tig0038342:21117-21136 | Msa1457080:CDS | 50.0% |
| GAGGGGTTATCTTCCAGACA+CGG | + | tig0038342:21153-21172 | None:intergenic | 50.0% | |
| GCGACTTGCAAGCTTCTGTT+TGG | - | tig0038342:21373-21392 | Msa1457080:intron | 50.0% | |
| !! | CGTGTCGTTGAGCATTGACG+TGG | - | tig0038342:14350-14369 | Msa1457080:three_prime_UTR | 55.0% |
| ! | GATGAGCTCGGTGGAGTTGA+CGG | - | tig0038342:14723-14742 | Msa1457080:three_prime_UTR | 55.0% |
| ! | ACGTTCTGTTGAAGGCGTGC+AGG | + | tig0038342:14758-14777 | None:intergenic | 55.0% |
| TGCACGCCTTCAACAGAACG+TGG | - | tig0038342:14757-14776 | Msa1457080:three_prime_UTR | 55.0% | |
| GGCCGTGGTATTCTCATCTC+CGG | - | tig0038342:14778-14797 | Msa1457080:three_prime_UTR | 55.0% | |
| CGCCGGAGATGAGAATACCA+CGG | + | tig0038342:14783-14802 | None:intergenic | 55.0% | |
| ! | GGTGTTGGATTTGGAGTCGC+CGG | + | tig0038342:14800-14819 | None:intergenic | 55.0% |
| CGGAGACATGAAGGGGGTTA+TGG | + | tig0038342:14864-14883 | None:intergenic | 55.0% | |
| CCCCTTCATGTCTCCGTCTA+TGG | - | tig0038342:14868-14887 | Msa1457080:CDS | 55.0% | |
| CGCCATAGACGGAGACATGA+AGG | + | tig0038342:14873-14892 | None:intergenic | 55.0% | |
| AAAATCGAGCGACGGTGGCA+GGG | + | tig0038342:14906-14925 | None:intergenic | 55.0% | |
| GTTGCATCTGCTGACGTGTC+AGG | - | tig0038342:14943-14962 | Msa1457080:CDS | 55.0% | |
| ! | TGTCAGGTACCGTGAGGATC+TGG | - | tig0038342:14959-14978 | Msa1457080:CDS | 55.0% |
| ! | GTCAGGTACCGTGAGGATCT+GGG | - | tig0038342:14960-14979 | Msa1457080:CDS | 55.0% |
| ! | TCAGGTACCGTGAGGATCTG+GGG | - | tig0038342:14961-14980 | Msa1457080:CDS | 55.0% |
| TCGCATTGTCACCTGTGGAG+AGG | - | tig0038342:15786-15805 | Msa1457080:CDS | 55.0% | |
| GCTGTTAGCTGGAGTCCTGA+TGG | - | tig0038342:17798-17817 | Msa1457080:intron | 55.0% | |
| GTGGGAGGGGAGGAAAGAAA+AGG | - | tig0038342:18447-18466 | Msa1457080:intron | 55.0% | |
| !! | GGGGAGGGCTCTGAAGATAA+AGG | + | tig0038342:18728-18747 | None:intergenic | 55.0% |
| ! | ACATGCTTGTAGGGTGCCTG+TGG | - | tig0038342:19079-19098 | Msa1457080:intron | 55.0% |
| TCAGGAGTTGTCATGCTGCG+TGG | - | tig0038342:20304-20323 | Msa1457080:intron | 55.0% | |
| TACTCACATCTCGGGAGGCA+CGG | + | tig0038342:20576-20595 | None:intergenic | 55.0% | |
| CTTGGTCCCCTGATAGCAGT+AGG | - | tig0038342:20969-20988 | Msa1457080:CDS | 55.0% | |
| CCACGGCCACGTTCTGTTGA+AGG | + | tig0038342:14766-14785 | None:intergenic | 60.0% | |
| CCTTCAACAGAACGTGGCCG+TGG | - | tig0038342:14763-14782 | Msa1457080:three_prime_UTR | 60.0% | |
| GAAAATCGAGCGACGGTGGC+AGG | + | tig0038342:14907-14926 | None:intergenic | 60.0% | |
| GGGTGAAAATCGAGCGACGG+TGG | + | tig0038342:14911-14930 | None:intergenic | 60.0% | |
| ! | CTGACGTGTCAGGTACCGTG+AGG | - | tig0038342:14953-14972 | Msa1457080:CDS | 60.0% |
| GCGAGTTCCCCAGATCCTCA+CGG | + | tig0038342:14971-14990 | None:intergenic | 60.0% | |
| CGTCTACCTATGCTGCCGCA+CGG | - | tig0038342:16395-16414 | Msa1457080:intron | 60.0% | |
| GTCTACCTATGCTGCCGCAC+GGG | - | tig0038342:16396-16415 | Msa1457080:intron | 60.0% | |
| TATGACCCGTGCGGCAGCAT+AGG | + | tig0038342:16404-16423 | None:intergenic | 60.0% | |
| GAGGAAAACAGTGGGAGGGG+AGG | - | tig0038342:18437-18456 | Msa1457080:intron | 60.0% | |
| AGAGTTTGGAGGGAGGGGAG+GGG | + | tig0038342:18747-18766 | None:intergenic | 60.0% | |
| GAGAGTTTGGAGGGAGGGGA+GGG | + | tig0038342:18748-18767 | None:intergenic | 60.0% | |
| TGAGAGTTTGGAGGGAGGGG+AGG | + | tig0038342:18749-18768 | None:intergenic | 60.0% | |
| TTTGGAGGGAGGGGAGGGGA+GGG | + | tig0038342:18743-18762 | None:intergenic | 65.0% | |
| GTTTGGAGGGAGGGGAGGGG+AGG | + | tig0038342:18744-18763 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038342 | gene | 14252 | 21747 | 14252 | ID=Msa1457080;Name=Msa1457080 |
| tig0038342 | mRNA | 14252 | 21747 | 14252 | ID=Msa1457080-mRNA-1;Parent=Msa1457080;Name=Msa1457080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=152|1|1|1|0.83|0.71|7|570|611 |
| tig0038342 | exon | 14252 | 15079 | 14252 | ID=Msa1457080-mRNA-1:exon:21006;Parent=Msa1457080-mRNA-1 |
| tig0038342 | exon | 15411 | 15818 | 15411 | ID=Msa1457080-mRNA-1:exon:21005;Parent=Msa1457080-mRNA-1 |
| tig0038342 | exon | 16607 | 17029 | 16607 | ID=Msa1457080-mRNA-1:exon:21004;Parent=Msa1457080-mRNA-1 |
| tig0038342 | exon | 18172 | 18358 | 18172 | ID=Msa1457080-mRNA-1:exon:21003;Parent=Msa1457080-mRNA-1 |
| tig0038342 | exon | 20136 | 20297 | 20136 | ID=Msa1457080-mRNA-1:exon:21002;Parent=Msa1457080-mRNA-1 |
| tig0038342 | exon | 20878 | 21378 | 20878 | ID=Msa1457080-mRNA-1:exon:21001;Parent=Msa1457080-mRNA-1 |
| tig0038342 | exon | 21699 | 21747 | 21699 | ID=Msa1457080-mRNA-1:exon:21000;Parent=Msa1457080-mRNA-1 |
| tig0038342 | five_prime_UTR | 21699 | 21747 | 21699 | ID=Msa1457080-mRNA-1:five_prime_utr;Parent=Msa1457080-mRNA-1 |
| tig0038342 | five_prime_UTR | 21276 | 21378 | 21276 | ID=Msa1457080-mRNA-1:five_prime_utr;Parent=Msa1457080-mRNA-1 |
| tig0038342 | CDS | 20878 | 21275 | 20878 | ID=Msa1457080-mRNA-1:cds;Parent=Msa1457080-mRNA-1 |
| tig0038342 | CDS | 20136 | 20297 | 20136 | ID=Msa1457080-mRNA-1:cds;Parent=Msa1457080-mRNA-1 |
| tig0038342 | CDS | 18172 | 18358 | 18172 | ID=Msa1457080-mRNA-1:cds;Parent=Msa1457080-mRNA-1 |
| tig0038342 | CDS | 16607 | 17029 | 16607 | ID=Msa1457080-mRNA-1:cds;Parent=Msa1457080-mRNA-1 |
| tig0038342 | CDS | 15411 | 15818 | 15411 | ID=Msa1457080-mRNA-1:cds;Parent=Msa1457080-mRNA-1 |
| tig0038342 | CDS | 14822 | 15079 | 14822 | ID=Msa1457080-mRNA-1:cds;Parent=Msa1457080-mRNA-1 |
| tig0038342 | three_prime_UTR | 14252 | 14821 | 14252 | ID=Msa1457080-mRNA-1:three_prime_utr;Parent=Msa1457080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
