Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687440 | CAA61298.1 | 91.988 | 674 | 11 | 5 | 1 | 670 | 1 | 635 | 0.0 | 1158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687440 | sp|Q7XTT4|NUCL2_ORYSJ | 48.201 | 278 | 92 | 8 | 336 | 603 | 408 | 643 | 3.24e-67 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687440 | Q40363 | 91.988 | 674 | 11 | 5 | 1 | 670 | 1 | 635 | 0.0 | 1158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030200 | Msa0687440 | 0.829118 | 6.154408e-55 | -8.615850e-47 |
| Msa0639300 | Msa0687440 | 0.807793 | 4.248338e-50 | -8.615850e-47 |
| Msa0648780 | Msa0687440 | 0.829769 | 4.277344e-55 | -8.615850e-47 |
| Msa0659050 | Msa0687440 | 0.855194 | 7.429950e-62 | -8.615850e-47 |
| Msa0660960 | Msa0687440 | -0.803657 | 3.139925e-49 | -8.615850e-47 |
| Msa0687440 | Msa0704980 | 0.873967 | 9.750418e-68 | -8.615850e-47 |
| Msa0687440 | Msa0745740 | 0.811546 | 6.632842e-51 | -8.615850e-47 |
| Msa0687440 | Msa0826990 | 0.804766 | 1.844980e-49 | -8.615850e-47 |
| Msa0687440 | Msa0966210 | 0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa0687440 | Msa1025460 | 0.811005 | 8.692734e-51 | -8.615850e-47 |
| Msa0687440 | Msa1037610 | 0.814056 | 1.871070e-51 | -8.615850e-47 |
| Msa0687440 | Msa1066190 | 0.809422 | 1.907042e-50 | -8.615850e-47 |
| Msa0687440 | Msa1083970 | 0.814291 | 1.660683e-51 | -8.615850e-47 |
| Msa0687440 | Msa1123770 | 0.807716 | 4.411960e-50 | -8.615850e-47 |
| Msa0687440 | Msa1129480 | 0.829334 | 5.457328e-55 | -8.615850e-47 |
| Msa0687440 | Msa1169910 | 0.808012 | 3.816762e-50 | -8.615850e-47 |
| Msa0687440 | Msa1191830 | 0.901858 | 1.750397e-78 | -8.615850e-47 |
| Msa0687440 | Msa1209850 | 0.898346 | 5.806374e-77 | -8.615850e-47 |
| Msa0687440 | Msa1218110 | 0.813841 | 2.086858e-51 | -8.615850e-47 |
| Msa0687440 | Msa1225720 | 0.839091 | 1.950046e-57 | -8.615850e-47 |
| Msa0687440 | Msa1258390 | 0.831942 | 1.254002e-55 | -8.615850e-47 |
| Msa0687440 | Msa1298690 | 0.802046 | 6.754972e-49 | -8.615850e-47 |
| Msa0687440 | Msa1330560 | 0.855499 | 6.056901e-62 | -8.615850e-47 |
| Msa0687440 | Msa1353430 | 0.829395 | 5.272227e-55 | -8.615850e-47 |
| Msa0687440 | Msa1356400 | 0.857924 | 1.171149e-62 | -8.615850e-47 |
| Msa0687440 | Msa1385720 | 0.809119 | 2.214684e-50 | -8.615850e-47 |
| Msa0687440 | Msa1444240 | 0.815650 | 8.294656e-52 | -8.615850e-47 |
| Msa0687440 | Msa1457080 | 0.801561 | 8.495300e-49 | -8.615850e-47 |
| Msa0164770 | Msa0687440 | 0.867859 | 1.003029e-65 | -8.615850e-47 |
| Msa0170200 | Msa0687440 | 0.834980 | 2.189994e-56 | -8.615850e-47 |
| Msa0188440 | Msa0687440 | 0.824335 | 8.535835e-54 | -8.615850e-47 |
| Msa0190350 | Msa0687440 | 0.836640 | 8.314260e-57 | -8.615850e-47 |
| Msa0223830 | Msa0687440 | -0.802037 | 6.783295e-49 | -8.615850e-47 |
| Msa0231030 | Msa0687440 | 0.816545 | 5.233222e-52 | -8.615850e-47 |
| Msa0482200 | Msa0687440 | 0.803466 | 3.440495e-49 | -8.615850e-47 |
| Msa0297630 | Msa0687440 | 0.810160 | 1.323616e-50 | -8.615850e-47 |
| Msa0485510 | Msa0687440 | 0.839287 | 1.734211e-57 | -8.615850e-47 |
| Msa0486070 | Msa0687440 | 0.819525 | 1.109744e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687440 | MtrunA17_Chr4g0038111 | 81.010 | 574 | 49 | 7 | 29 | 595 | 4 | 524 | 0.0 | 639 |
| Msa0687440 | MtrunA17_Chr1g0163591 | 37.288 | 295 | 119 | 7 | 342 | 618 | 415 | 661 | 1.05e-34 | 140 |
| Msa0687440 | MtrunA17_Chr1g0163591 | 49.306 | 144 | 68 | 4 | 349 | 488 | 269 | 411 | 1.24e-34 | 140 |
| Msa0687440 | MtrunA17_Chr8g0350331 | 88.000 | 75 | 9 | 0 | 32 | 106 | 8 | 82 | 3.15e-23 | 95.1 |
| Msa0687440 | MtrunA17_Chr3g0098471 | 40.179 | 224 | 60 | 6 | 208 | 427 | 30 | 183 | 2.09e-22 | 95.1 |
| Msa0687440 | MtrunA17_Chr3g0098471 | 48.246 | 114 | 21 | 5 | 29 | 140 | 22 | 99 | 3.01e-12 | 65.9 |
| Msa0687440 | MtrunA17_Chr3g0098471 | 66.071 | 56 | 16 | 1 | 122 | 177 | 47 | 99 | 8.03e-12 | 64.7 |
| Msa0687440 | MtrunA17_Chr4g0050311 | 31.395 | 172 | 102 | 6 | 310 | 471 | 3 | 168 | 3.58e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687440 | AT3G18610.1 | 44.807 | 337 | 130 | 13 | 339 | 670 | 350 | 635 | 6.62e-65 | 226 |
| Msa0687440 | AT3G18610.3 | 44.807 | 337 | 130 | 13 | 339 | 670 | 320 | 605 | 7.42e-65 | 225 |
| Msa0687440 | AT3G18610.2 | 44.807 | 337 | 130 | 13 | 339 | 670 | 290 | 575 | 9.61e-65 | 224 |
| Msa0687440 | AT1G45100.1 | 45.238 | 84 | 46 | 0 | 362 | 445 | 236 | 319 | 4.97e-12 | 69.3 |
Find 197 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAACTTATCTTCCATTT+TGG | 0.105937 | 4_4:+52265667 | Msa0687440:three_prime_UTR |
| AGGCATATTGAATGAGAAAT+TGG | 0.183956 | 4_4:-52260973 | None:intergenic |
| AAAGAAAGGGGTTAGGGTTT+TGG | 0.191255 | 4_4:-52260833 | None:intergenic |
| CCTGCGGCTGAGAGAGAATT+AGG | 0.197955 | 4_4:-52260924 | None:intergenic |
| TAACCAGATTCATAATCTTT+AGG | 0.228104 | 4_4:-52264959 | None:intergenic |
| AACCAGATTCATAATCTTTA+GGG | 0.230306 | 4_4:-52264958 | None:intergenic |
| CTGGTCTCATTTGGTGTAGC+TGG | 0.234972 | 4_4:-52264099 | None:intergenic |
| GCTAAATTGATGGAGCATTT+TGG | 0.237940 | 4_4:+52264902 | Msa0687440:CDS |
| GATGGGGATGGAGTATTTAA+AGG | 0.245284 | 4_4:+52264315 | Msa0687440:CDS |
| GAAGAATCATCTTTCTTTGC+AGG | 0.246216 | 4_4:-52262730 | None:intergenic |
| AGTAATTACCTATTATTATT+AGG | 0.251107 | 4_4:-52264573 | None:intergenic |
| TTTGGTGTAGCTGGGGTATT+AGG | 0.268355 | 4_4:-52264090 | None:intergenic |
| TTCACTAACCTCTTTCTTAG+AGG | 0.273370 | 4_4:-52263483 | None:intergenic |
| CAGTCATATATGATGGATAT+TGG | 0.289338 | 4_4:+52265817 | Msa0687440:three_prime_UTR |
| CTGAGAGAGAATTAGGGTTT+TGG | 0.292852 | 4_4:-52260917 | None:intergenic |
| ATGGTTGATGCTGGCAAATC+TGG | 0.301012 | 4_4:+52263956 | Msa0687440:CDS |
| CTGGCCTCTTCCACCACTTT+GGG | 0.301540 | 4_4:-52264703 | None:intergenic |
| GGAATTGTGAGAAGAGAGTT+AGG | 0.312137 | 4_4:-52260868 | None:intergenic |
| GGCATATTGAATGAGAAATT+GGG | 0.316476 | 4_4:-52260972 | None:intergenic |
| GGTGGAAGAAGCGGTGGATT+TGG | 0.317426 | 4_4:+52265274 | Msa0687440:CDS |
| CATTTACTCCTAATAATAAT+AGG | 0.329724 | 4_4:+52264565 | Msa0687440:CDS |
| CCTCTGAAGTGGTCTCTGGC+TGG | 0.335134 | 4_4:-52262159 | None:intergenic |
| GAACTTGCAGCTTTCTTTGT+GGG | 0.341562 | 4_4:-52263161 | None:intergenic |
| AGAGGAGGAGGAGGTCGATT+TGG | 0.344817 | 4_4:+52265313 | Msa0687440:CDS |
| TCAGATAAGAGCTAAATTGA+TGG | 0.346839 | 4_4:+52264892 | Msa0687440:intron |
| ATTGAAAACACCTCAGAAAA+AGG | 0.347750 | 4_4:+52263815 | Msa0687440:CDS |
| GAAGTATCATCTTTCTTTGC+GGG | 0.350810 | 4_4:-52262468 | None:intergenic |
| ATCCCTAAAGATTATGAATC+TGG | 0.352672 | 4_4:+52264956 | Msa0687440:CDS |
| GCGGATTTCTTGCTTGATTT+AGG | 0.360381 | 4_4:-52260993 | None:intergenic |
| GATGGAGTATTTAAAGGCTT+TGG | 0.363032 | 4_4:+52264321 | Msa0687440:CDS |
| TATACGAAAAGAAAGGGGTT+AGG | 0.363593 | 4_4:-52260840 | None:intergenic |
| TTAGCTGGGGTCTTCTTTGA+AGG | 0.364114 | 4_4:-52262115 | None:intergenic |
| TTAGGGATTGACACCCTTGT+AGG | 0.366397 | 4_4:-52264941 | None:intergenic |
| TTTGAGCCACTGGTCTCATT+TGG | 0.369919 | 4_4:-52264108 | None:intergenic |
| TGTTCACAGGTTTGCATACA+TGG | 0.371589 | 4_4:+52265093 | Msa0687440:CDS |
| ACCTTGACTATCTCTAGGTT+TGG | 0.378375 | 4_4:-52265200 | None:intergenic |
| CTCTGAAGTGGTCTCTGGCT+GGG | 0.379329 | 4_4:-52262158 | None:intergenic |
| AGGAGTGGTGGTGGTCGATT+TGG | 0.380127 | 4_4:+52265247 | Msa0687440:CDS |
| AGGAGTGGTGGAAGAGGAGG+AGG | 0.384008 | 4_4:+52265301 | Msa0687440:CDS |
| ATGCTAATAGCTTACACTTT+GGG | 0.402090 | 4_4:-52264373 | None:intergenic |
| ACTGGCCTCTTCCACCACTT+TGG | 0.404674 | 4_4:-52264704 | None:intergenic |
| GCTCAAAGACATTATTTGTT+GGG | 0.408855 | 4_4:+52264124 | Msa0687440:CDS |
| TATCCGAGCTTGCAGATGTT+TGG | 0.409957 | 4_4:+52265852 | Msa0687440:three_prime_UTR |
| GGAGGAGGAGGTCGATTTGG+TGG | 0.415408 | 4_4:+52265316 | Msa0687440:CDS |
| GATTCCTCTGAAGTGGTCTC+TGG | 0.415465 | 4_4:-52262163 | None:intergenic |
| CCTAGAGATAGTCAAGGTTC+TGG | 0.420795 | 4_4:+52265205 | Msa0687440:CDS |
| CACTTCTTCCTCATCGGAAG+AGG | 0.423585 | 4_4:-52262203 | None:intergenic |
| AGTGGTGGAAGAGGAGGAGG+AGG | 0.428067 | 4_4:+52265304 | Msa0687440:CDS |
| TGGTCTCATTTGGTGTAGCT+GGG | 0.430539 | 4_4:-52264098 | None:intergenic |
| AGTCTCAAACAGTATTTGTC+AGG | 0.432245 | 4_4:+52264724 | Msa0687440:CDS |
| GAGCACGATGCAACAGTTCT+TGG | 0.434082 | 4_4:-52264512 | None:intergenic |
| AGTGGTGGTGGTCGATTTGG+TGG | 0.436467 | 4_4:+52265250 | Msa0687440:CDS |
| ATACGAAAAGAAAGGGGTTA+GGG | 0.440248 | 4_4:-52260839 | None:intergenic |
| GTTGTTTCTCCAGTGAAGTC+TGG | 0.441415 | 4_4:+52261137 | Msa0687440:CDS |
| GAAGGAACAGCTTTAGCTGC+AGG | 0.441481 | 4_4:-52262691 | None:intergenic |
| CGCCAAGCAAAAGGCGTTGA+AGG | 0.441849 | 4_4:+52261892 | Msa0687440:CDS |
| GAAAATTTCTTCCAAGGTTG+CGG | 0.442385 | 4_4:+52264264 | Msa0687440:CDS |
| AACGTTTCACGTCGAAGGAC+AGG | 0.443778 | 4_4:-52264149 | None:intergenic |
| GGTAGGAGTGGTGGAAGAGG+AGG | 0.445688 | 4_4:+52265298 | Msa0687440:CDS |
| GGAAGGGATAGTGGCGGTAG+AGG | 0.446801 | 4_4:+52265337 | Msa0687440:CDS |
| CCTTTCTTTCCAGACTTCAC+TGG | 0.449206 | 4_4:-52261146 | None:intergenic |
| GGTGGTCGATTTGGTGGAGG+TGG | 0.450277 | 4_4:+52265256 | Msa0687440:CDS |
| CGATTTGGTGGAAGGGATAG+TGG | 0.450518 | 4_4:+52265328 | Msa0687440:CDS |
| GGTGGTAGGAGTGGTGGAAG+AGG | 0.452249 | 4_4:+52265295 | Msa0687440:CDS |
| GGTTCTGGTGGTAGAGGTGG+AGG | 0.454259 | 4_4:+52265220 | Msa0687440:CDS |
| GAGGAGGTCGATTTGGTGGA+AGG | 0.455773 | 4_4:+52265320 | Msa0687440:CDS |
| GGCTCAAAGACATTATTTGT+TGG | 0.457432 | 4_4:+52264123 | Msa0687440:CDS |
| GGGGTCTTCTTTGAAGGAGC+AGG | 0.459580 | 4_4:-52262109 | None:intergenic |
| GACTTGATTTAGCTCGGGAG+AGG | 0.461620 | 4_4:+52264538 | Msa0687440:CDS |
| TCTGGTGGTAGAGGTGGAGG+TGG | 0.461700 | 4_4:+52265223 | Msa0687440:CDS |
| CTCTCCGACTTGATTTAGCT+CGG | 0.462101 | 4_4:+52264532 | Msa0687440:CDS |
| ACATTTACTAGTATAACTTT+AGG | 0.463177 | 4_4:+52265928 | Msa0687440:three_prime_UTR |
| ATCTTCATCGGATTCTTCAT+CGG | 0.463604 | 4_4:-52263198 | None:intergenic |
| GTGGTAGAGGTGGAGGTGGA+AGG | 0.463792 | 4_4:+52265227 | Msa0687440:CDS |
| TTACTTCATGTATTGTTCAC+AGG | 0.464880 | 4_4:+52265080 | Msa0687440:CDS |
| CACTTTCACTTCTTCCTCAT+CGG | 0.467568 | 4_4:-52262209 | None:intergenic |
| CAACAACCTCTCCGCAACCT+TGG | 0.467608 | 4_4:-52264275 | None:intergenic |
| CTGCGGCTGAGAGAGAATTA+GGG | 0.468196 | 4_4:-52260923 | None:intergenic |
| CTTCATGAAAGTGAACTTGA+TGG | 0.468232 | 4_4:+52265154 | Msa0687440:CDS |
| GGAGGTGGAAGGAGTGGTGG+TGG | 0.477011 | 4_4:+52265238 | Msa0687440:CDS |
| AGAGGTGGTCGAGGAGGAAG+AGG | 0.478640 | 4_4:+52265355 | Msa0687440:CDS |
| AGAGGTTGCCGCCAAGCAAA+AGG | 0.479123 | 4_4:+52261883 | Msa0687440:CDS |
| TAAGAAAGAGGTTAGTGAAT+CGG | 0.481358 | 4_4:+52263487 | Msa0687440:CDS |
| TTCAGAGAAAATTTCTTCCA+AGG | 0.486230 | 4_4:+52264258 | Msa0687440:intron |
| TTAACTCACTTCATCTTCAT+CGG | 0.487222 | 4_4:-52263210 | None:intergenic |
| GTACTTGTGGGGAACCTACA+AGG | 0.489480 | 4_4:+52264927 | Msa0687440:CDS |
| AGAGGTGGAGGTGGAAGGAG+TGG | 0.489917 | 4_4:+52265232 | Msa0687440:CDS |
| ACTTTAGGCATGTGAAAAGA+AGG | 0.493288 | 4_4:+52265943 | Msa0687440:three_prime_UTR |
| TGTTGATGTACGTCTTGCTT+CGG | 0.495897 | 4_4:+52264293 | Msa0687440:CDS |
| AGAACTTGCAGCTTTCTTTG+TGG | 0.496340 | 4_4:-52263162 | None:intergenic |
| AGAACTATCATCTTTCTTTG+CGG | 0.496659 | 4_4:-52262945 | None:intergenic |
| ATGTACGTCTTGCTTCGGAT+GGG | 0.500671 | 4_4:+52264298 | Msa0687440:CDS |
| AGTCAAGGTTCTGGTGGTAG+AGG | 0.500732 | 4_4:+52265214 | Msa0687440:CDS |
| CGTCTTGCTTCGGATGGGGA+TGG | 0.500867 | 4_4:+52264303 | Msa0687440:CDS |
| CCTAATTCTCTCTCAGCCGC+AGG | 0.502199 | 4_4:+52260924 | Msa0687440:five_prime_UTR |
| AAATAATGTCTTTGAGCCAC+TGG | 0.502495 | 4_4:-52264118 | None:intergenic |
| CGAGGAGGAAGAGGTGGTCG+TGG | 0.503442 | 4_4:+52265364 | Msa0687440:CDS |
| GATGGAACAGCTTTAGCTGC+GGG | 0.503596 | 4_4:-52262429 | None:intergenic |
| CCAGTGAAGTCTGGAAAGAA+AGG | 0.505222 | 4_4:+52261146 | Msa0687440:CDS |
| TAATAGGCACTTGAGATGAA+TGG | 0.505941 | 4_4:+52264489 | Msa0687440:intron |
| AGAAGTATCATCTTTCTTTG+CGG | 0.506839 | 4_4:-52262469 | None:intergenic |
| TTGCAAAGAAACATACCCCT+TGG | 0.507492 | 4_4:-52264984 | None:intergenic |
| ACCTCTTTCTTAGAGGCCAC+AGG | 0.507804 | 4_4:-52263476 | None:intergenic |
| TTCACTGGAGAAACAACAAC+AGG | 0.510600 | 4_4:-52261131 | None:intergenic |
| CTCTGAGGAATCTGAGGATG+AGG | 0.511350 | 4_4:+52261949 | Msa0687440:CDS |
| GAAGCGGTGGATTTGGTGGT+AGG | 0.512935 | 4_4:+52265281 | Msa0687440:CDS |
| GGTGGAGGTGGAAGGAGTGG+TGG | 0.513178 | 4_4:+52265235 | Msa0687440:CDS |
| ACTTGATTTAGCTCGGGAGA+GGG | 0.513360 | 4_4:+52264539 | Msa0687440:CDS |
| GGATTTGGTGGTAGGAGTGG+TGG | 0.516006 | 4_4:+52265289 | Msa0687440:CDS |
| GGTGGTGGTCGATTTGGTGG+AGG | 0.516852 | 4_4:+52265253 | Msa0687440:CDS |
| TTACCTTCAGAAGCAAAGCT+TGG | 0.517885 | 4_4:-52265400 | None:intergenic |
| TCAGCCCAAAGTGGTGGAAG+AGG | 0.519792 | 4_4:+52264699 | Msa0687440:CDS |
| AGAAGATTCAGATGAAGATG+AGG | 0.520261 | 4_4:+52262759 | Msa0687440:CDS |
| TAACCAAACATCTGCAAGCT+CGG | 0.520652 | 4_4:-52265855 | None:intergenic |
| GGAAGAAGCGGTGGATTTGG+TGG | 0.521554 | 4_4:+52265277 | Msa0687440:CDS |
| AAACCAAGCTTTGCTTCTGA+AGG | 0.523386 | 4_4:+52265397 | Msa0687440:CDS |
| GTCAGAACGTTTCACGTCGA+AGG | 0.526938 | 4_4:-52264154 | None:intergenic |
| ACAGCAGCAGGCTTAGACAC+AGG | 0.527887 | 4_4:-52263377 | None:intergenic |
| GGCGTTGAAGGTAGTCAAGA+AGG | 0.528027 | 4_4:+52261904 | Msa0687440:CDS |
| TCTCCGACTTGATTTAGCTC+GGG | 0.533160 | 4_4:+52264533 | Msa0687440:CDS |
| ATCTTCTGACGAAGAAGATA+AGG | 0.533278 | 4_4:+52262985 | Msa0687440:CDS |
| ATAGCCTCAGTCATATATGA+TGG | 0.537411 | 4_4:+52265810 | Msa0687440:three_prime_UTR |
| AGGGATAGTGGCGGTAGAGG+TGG | 0.538819 | 4_4:+52265340 | Msa0687440:CDS |
| TAAGAATCTTGGAGAGGATG+AGG | 0.539483 | 4_4:+52264755 | Msa0687440:CDS |
| GCATATTGAATGAGAAATTG+GGG | 0.539593 | 4_4:-52260971 | None:intergenic |
| GGTGGATTTGGTGGTAGGAG+TGG | 0.540537 | 4_4:+52265286 | Msa0687440:CDS |
| CCAGAACCTTGACTATCTCT+AGG | 0.540562 | 4_4:-52265205 | None:intergenic |
| AGTGGCGGTAGAGGTGGTCG+AGG | 0.540676 | 4_4:+52265346 | Msa0687440:CDS |
| GATGTACGTCTTGCTTCGGA+TGG | 0.542059 | 4_4:+52264297 | Msa0687440:CDS |
| CAAGGTTCTGGTGGTAGAGG+TGG | 0.544275 | 4_4:+52265217 | Msa0687440:CDS |
| CTTTGATATAGGCAAGAGGC+AGG | 0.545783 | 4_4:+52261814 | Msa0687440:intron |
| GCAGGCTGAGGAAGAAGTCA+AGG | 0.547712 | 4_4:+52261832 | Msa0687440:CDS |
| AGAGTCAGATTCCTCTGAAG+TGG | 0.548311 | 4_4:-52262170 | None:intergenic |
| CTGCAAGCTCGGATAGCTGC+AGG | 0.549743 | 4_4:-52265844 | None:intergenic |
| ACAGATCAAGGACGTGGAGA+TGG | 0.552435 | 4_4:+52263937 | Msa0687440:intron |
| AGGAGGTCGATTTGGTGGAA+GGG | 0.553576 | 4_4:+52265321 | Msa0687440:CDS |
| ACCTGTGGCCTCTAAGAAAG+AGG | 0.554114 | 4_4:+52263475 | Msa0687440:CDS |
| TATGAATCTGGTTATTCCAA+GGG | 0.555285 | 4_4:+52264968 | Msa0687440:CDS |
| CTCCTCACTCTCGTCAGAGT+CGG | 0.559018 | 4_4:-52263775 | None:intergenic |
| TTATGAATCTGGTTATTCCA+AGG | 0.559573 | 4_4:+52264967 | Msa0687440:CDS |
| AGATTCCTCAGAGGATTCCT+CGG | 0.560086 | 4_4:-52261939 | None:intergenic |
| TTCTTCATCGGATTCTTCAT+CGG | 0.560281 | 4_4:-52263186 | None:intergenic |
| AGTGAGTGCAAAGAAGCAAA+AGG | 0.568954 | 4_4:+52261856 | Msa0687440:CDS |
| GTCTCAAACAGTATTTGTCA+GGG | 0.570865 | 4_4:+52264725 | Msa0687440:CDS |
| TGTACGTCTTGCTTCGGATG+GGG | 0.571328 | 4_4:+52264299 | Msa0687440:CDS |
| CGAGAGTGAGGAGGAGAGTG+AGG | 0.574779 | 4_4:+52263785 | Msa0687440:CDS |
| TGGTTGATGCTGGCAAATCT+GGG | 0.576768 | 4_4:+52263957 | Msa0687440:CDS |
| TTGGTAAAGATCTTGTGTAT+CGG | 0.577757 | 4_4:+52265772 | Msa0687440:three_prime_UTR |
| CTTGATTTAGCTCGGGAGAG+GGG | 0.578698 | 4_4:+52264540 | Msa0687440:CDS |
| GGTGGAGGTGGAAGAAGCGG+TGG | 0.580780 | 4_4:+52265268 | Msa0687440:CDS |
| AACTGTGAACAGTCTGAAGT+AGG | 0.583885 | 4_4:-52265046 | None:intergenic |
| TATAGGCAAGAGGCAGGCTG+AGG | 0.588543 | 4_4:+52261820 | Msa0687440:intron |
| AACTACTCAGCCCAAAGTGG+TGG | 0.591190 | 4_4:+52264693 | Msa0687440:CDS |
| CTAATTCTCTCTCAGCCGCA+GGG | 0.592963 | 4_4:+52260925 | Msa0687440:five_prime_UTR |
| GGCGGTAGAGGTGGTCGAGG+AGG | 0.593185 | 4_4:+52265349 | Msa0687440:CDS |
| TGACAAATACTGTTTGAGAC+TGG | 0.594261 | 4_4:-52264722 | None:intergenic |
| CTTTAGGCATGTGAAAAGAA+GGG | 0.596286 | 4_4:+52265944 | Msa0687440:three_prime_UTR |
| GGAATCCTCTGAGGAATCTG+AGG | 0.596711 | 4_4:+52261943 | Msa0687440:CDS |
| TGCAGCATTAGGAGAAGCAG+TGG | 0.598804 | 4_4:-52265011 | None:intergenic |
| TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 4_4:+52264347 | Msa0687440:CDS |
| GGTCTCATTTGGTGTAGCTG+GGG | 0.600709 | 4_4:-52264097 | None:intergenic |
| AAAGAAGCAAAAGGTAGAAG+AGG | 0.600905 | 4_4:+52261865 | Msa0687440:CDS |
| TTCCGACTCTGACGAGAGTG+AGG | 0.613333 | 4_4:+52263773 | Msa0687440:CDS |
| TTTGGTGGAGGTGGAAGAAG+CGG | 0.617758 | 4_4:+52265265 | Msa0687440:CDS |
| GACGTGGAGATGGTTGATGC+TGG | 0.618173 | 4_4:+52263947 | Msa0687440:CDS |
| GTTGAAACAGATCAAGGACG+TGG | 0.624210 | 4_4:+52263931 | Msa0687440:intron |
| GAAGGAGGAAAGTAGTTCCG+AGG | 0.625559 | 4_4:+52261922 | Msa0687440:CDS |
| CCAGCCAGAGACCACTTCAG+AGG | 0.625597 | 4_4:+52262159 | Msa0687440:CDS |
| AGAGATAGTCAAGGTTCTGG+TGG | 0.625604 | 4_4:+52265208 | Msa0687440:CDS |
| GGTGGTCGAGGAGGAAGAGG+TGG | 0.627115 | 4_4:+52265358 | Msa0687440:CDS |
| GAGTGATTCGTCTGATGACG+AGG | 0.627287 | 4_4:+52263511 | Msa0687440:CDS |
| TGAATCTTCTGATGAAGACA+AGG | 0.628462 | 4_4:+52262515 | Msa0687440:CDS |
| AAAACTGCCACCCTAGTCGT+CGG | 0.640972 | 4_4:-52265643 | None:intergenic |
| GGAGGAAGAGGTGGTCGTGG+AGG | 0.644972 | 4_4:+52265367 | Msa0687440:CDS |
| TTGACTTTGATATAGGCAAG+AGG | 0.646540 | 4_4:+52261810 | Msa0687440:intron |
| CGACTCTGACGAGAGTGAGG+AGG | 0.647070 | 4_4:+52263776 | Msa0687440:CDS |
| TCTCAAACAGTATTTGTCAG+GGG | 0.650987 | 4_4:+52264726 | Msa0687440:CDS |
| ATGAATCTGGTTATTCCAAG+GGG | 0.651208 | 4_4:+52264969 | Msa0687440:CDS |
| TGATGGTTATCAGTTGTCAG+TGG | 0.655450 | 4_4:+52265171 | Msa0687440:CDS |
| TACTTGTGGGGAACCTACAA+GGG | 0.657423 | 4_4:+52264928 | Msa0687440:CDS |
| AACAGTTATATGATTCAACT+CGG | 0.665142 | 4_4:-52265882 | None:intergenic |
| TGACAGCTCCTCTTCCGATG+AGG | 0.667005 | 4_4:+52262195 | Msa0687440:CDS |
| AGATGGAACAGCTTTAGCTG+CGG | 0.669599 | 4_4:-52262430 | None:intergenic |
| GCCAAACCTAGAGATAGTCA+AGG | 0.670318 | 4_4:+52265199 | Msa0687440:CDS |
| ATATCCATCATATATGACTG+AGG | 0.675810 | 4_4:-52265814 | None:intergenic |
| TCTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 4_4:-52264536 | None:intergenic |
| GTTGAAGGTAGTCAAGAAGG+AGG | 0.683060 | 4_4:+52261907 | Msa0687440:CDS |
| CTCATCCTCAGATTCCTCAG+AGG | 0.686828 | 4_4:-52261948 | None:intergenic |
| TGATGAAGATAAGAAACCTG+TGG | 0.691109 | 4_4:+52263460 | Msa0687440:CDS |
| GGATAAGATGAATATTGACA+AGG | 0.692392 | 4_4:+52263746 | Msa0687440:intron |
| TTTCTTCCAAGGTTGCGGAG+AGG | 0.694587 | 4_4:+52264269 | Msa0687440:CDS |
| AGTAACTACTCAGCCCAAAG+TGG | 0.695978 | 4_4:+52264690 | Msa0687440:intron |
| CATATTGAATGAGAAATTGG+GGG | 0.702887 | 4_4:-52260970 | None:intergenic |
| TTTGGTGGAAGGGATAGTGG+CGG | 0.720960 | 4_4:+52265331 | Msa0687440:CDS |
| TAGTTCCGAGGAATCCTCTG+AGG | 0.721411 | 4_4:+52261934 | Msa0687440:CDS |
| GCTACACCAAATGAGACCAG+TGG | 0.725457 | 4_4:+52264102 | Msa0687440:CDS |
| GGAAGCTATTCAAAACCCTG+CGG | 0.794539 | 4_4:-52260940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAATGATATAAAATTAA+GGG | - | chr4_4:52262822-52262841 | None:intergenic | 10.0% |
| !! | AATACAATGATATAAAATTA+AGG | - | chr4_4:52262823-52262842 | None:intergenic | 10.0% |
| !! | GGAAAAAATATATATTTAAT+GGG | - | chr4_4:52263096-52263115 | None:intergenic | 10.0% |
| !! | AGGAAAAAATATATATTTAA+TGG | - | chr4_4:52263097-52263116 | None:intergenic | 10.0% |
| !!! | TTAAATATATATTTTTTCCT+TGG | + | chr4_4:52263097-52263116 | Msa0687440:intron | 10.0% |
| !! | TTTATATTTCATTTCAATAT+AGG | - | chr4_4:52263615-52263634 | None:intergenic | 10.0% |
| !!! | TTTTGATTTTAATTTTAGTT+TGG | + | chr4_4:52263868-52263887 | Msa0687440:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTAC+TGG | + | chr4_4:52264021-52264040 | Msa0687440:intron | 10.0% |
| !! | GTATCAAAAAATATATTAAT+TGG | - | chr4_4:52265440-52265459 | None:intergenic | 10.0% |
| !!! | ATTTTATTTGATTTGATTCA+TGG | + | chr4_4:52261237-52261256 | Msa0687440:intron | 15.0% |
| !!! | TTTTATTTGATTTGATTCAT+GGG | + | chr4_4:52261238-52261257 | Msa0687440:intron | 15.0% |
| !!! | TTAAAGATGATATTTTTACT+TGG | + | chr4_4:52261287-52261306 | Msa0687440:intron | 15.0% |
| !!! | ATTTTATTGTTTTTGATTCA+TGG | + | chr4_4:52261320-52261339 | Msa0687440:intron | 15.0% |
| !!! | TTTTATTGTTTTTGATTCAT+GGG | + | chr4_4:52261321-52261340 | Msa0687440:intron | 15.0% |
| !!! | AACAATATCTTTAAAAAACT+CGG | - | chr4_4:52261411-52261430 | None:intergenic | 15.0% |
| !!! | ATGTTTAAGATATTAATCAA+AGG | - | chr4_4:52262282-52262301 | None:intergenic | 15.0% |
| !! | AAAAAAAAGTGAATTATAGA+GGG | - | chr4_4:52262397-52262416 | None:intergenic | 15.0% |
| !! | TAAAAAAAAGTGAATTATAG+AGG | - | chr4_4:52262398-52262417 | None:intergenic | 15.0% |
| !!! | TGTATTTACAATTTTTTGTT+TGG | + | chr4_4:52262837-52262856 | Msa0687440:intron | 15.0% |
| !! | ATTGAAATGAAATATAAACA+TGG | + | chr4_4:52263617-52263636 | Msa0687440:intron | 15.0% |
| !! | AGTAATTACCTATTATTATT+AGG | - | chr4_4:52264576-52264595 | None:intergenic | 15.0% |
| !! | TCTGTTAAAATAATAAGTAA+TGG | - | chr4_4:52265986-52266005 | None:intergenic | 15.0% |
| !!! | TTTTATATACGAAAAGAAAG+GGG | - | chr4_4:52260848-52260867 | None:intergenic | 20.0% |
| !!! | GTTTTATATACGAAAAGAAA+GGG | - | chr4_4:52260849-52260868 | None:intergenic | 20.0% |
| !! | ATCAATCTCTTGTTAATTTA+AGG | + | chr4_4:52261036-52261055 | Msa0687440:intron | 20.0% |
| !!! | TTTGTTTTTGATTTGTTTGT+AGG | + | chr4_4:52261097-52261116 | Msa0687440:intron | 20.0% |
| !!! | TCAAATAAAATTGGAGTTTT+TGG | - | chr4_4:52261684-52261703 | None:intergenic | 20.0% |
| !! | ATCAGAACATCAAATAAAAT+TGG | - | chr4_4:52261693-52261712 | None:intergenic | 20.0% |
| !!! | AAAGTGATTTTTTTTTTCTC+TGG | + | chr4_4:52261748-52261767 | Msa0687440:intron | 20.0% |
| !! | TCAATAAAAAAAAACGACAT+CGG | - | chr4_4:52261785-52261804 | None:intergenic | 20.0% |
| !!! | GTTTTAAAGAAAAGAACAAT+AGG | - | chr4_4:52262373-52262392 | None:intergenic | 20.0% |
| !! | ATATCATGCTATAAACTAAA+GGG | - | chr4_4:52262578-52262597 | None:intergenic | 20.0% |
| !! | TATATCATGCTATAAACTAA+AGG | - | chr4_4:52262579-52262598 | None:intergenic | 20.0% |
| !!! | TTGTTCTAGCTATAAATTAA+AGG | - | chr4_4:52262602-52262621 | None:intergenic | 20.0% |
| !! | TGATAAACAAAACAAAAAGT+TGG | - | chr4_4:52262632-52262651 | None:intergenic | 20.0% |
| !! | AGATGTGACATTTAAATATA+TGG | - | chr4_4:52263264-52263283 | None:intergenic | 20.0% |
| !! | ATGAAATATAAACATGGTAA+TGG | + | chr4_4:52263623-52263642 | Msa0687440:intron | 20.0% |
| !!! | TTATTGTGTTATTGATACAA+TGG | + | chr4_4:52263705-52263724 | Msa0687440:intron | 20.0% |
| !!! | TATTGTGTTATTGATACAAT+GGG | + | chr4_4:52263706-52263725 | Msa0687440:intron | 20.0% |
| !! | TTGTTTGCATGTTTAATAAT+AGG | + | chr4_4:52264473-52264492 | Msa0687440:intron | 20.0% |
| !! | CATTTACTCCTAATAATAAT+AGG | + | chr4_4:52264565-52264584 | Msa0687440:CDS | 20.0% |
| !! | AAAATACATAACAGAATAAG+AGG | - | chr4_4:52264873-52264892 | None:intergenic | 20.0% |
| !!! | AATATTTTTTACTTCAGTTC+TGG | + | chr4_4:52265562-52265581 | Msa0687440:intron | 20.0% |
| !! | ACATTTACTAGTATAACTTT+AGG | + | chr4_4:52265928-52265947 | Msa0687440:three_prime_UTR | 20.0% |
| !!! | GGTTTTATATACGAAAAGAA+AGG | - | chr4_4:52260850-52260869 | None:intergenic | 25.0% |
| !! | TTGATGAAAAAAGCATACTT+TGG | - | chr4_4:52261021-52261040 | None:intergenic | 25.0% |
| ! | CAATGGACAGAAAAAATAAT+TGG | - | chr4_4:52261489-52261508 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTCTGTCCATTG+AGG | + | chr4_4:52261489-52261508 | Msa0687440:intron | 25.0% |
| ! | AAATCATATAAATGCCTCAA+TGG | - | chr4_4:52261506-52261525 | None:intergenic | 25.0% |
| ! | TTGATTTATGCTATGAAGTT+AGG | + | chr4_4:52261525-52261544 | Msa0687440:intron | 25.0% |
| ! | ATGTTAATATAGCTGTTGAT+TGG | + | chr4_4:52261569-52261588 | Msa0687440:intron | 25.0% |
| !!! | TTGGAGTTTTTGGTAAAAAT+CGG | - | chr4_4:52261674-52261693 | None:intergenic | 25.0% |
| !! | ATGCTTTAATGCATTTTGAA+TGG | + | chr4_4:52261990-52262009 | Msa0687440:intron | 25.0% |
| !! | TATGTCATGTTAATTTTACG+TGG | + | chr4_4:52262062-52262081 | Msa0687440:intron | 25.0% |
| ! | TTATATCATAAACACTGTGT+TGG | + | chr4_4:52262344-52262363 | Msa0687440:intron | 25.0% |
| !!! | ACATTTTGAAGTTTATTGCA+TGG | + | chr4_4:52262544-52262563 | Msa0687440:intron | 25.0% |
| ! | TAAAACACATGAGTTATAGA+GGG | - | chr4_4:52262660-52262679 | None:intergenic | 25.0% |
| ! | ATAAAACACATGAGTTATAG+AGG | - | chr4_4:52262661-52262680 | None:intergenic | 25.0% |
| !! | TCTATAACTCATGTGTTTTA+TGG | + | chr4_4:52262660-52262679 | Msa0687440:intron | 25.0% |
| ! | AAATCATACAACCATATGAA+AGG | - | chr4_4:52263237-52263256 | None:intergenic | 25.0% |
| ! | TAAATATACTTGTAGTAGCA+TGG | + | chr4_4:52263653-52263672 | Msa0687440:intron | 25.0% |
| ! | TACTGCAATAACACAATAAA+TGG | - | chr4_4:52264674-52264693 | None:intergenic | 25.0% |
| ! | AGCAGAAATAATAAACATGA+GGG | - | chr4_4:52264825-52264844 | None:intergenic | 25.0% |
| ! | AAGCAGAAATAATAAACATG+AGG | - | chr4_4:52264826-52264845 | None:intergenic | 25.0% |
| ! | AACCAGATTCATAATCTTTA+GGG | - | chr4_4:52264961-52264980 | None:intergenic | 25.0% |
| ! | TAACCAGATTCATAATCTTT+AGG | - | chr4_4:52264962-52264981 | None:intergenic | 25.0% |
| !! | GATACAGCTTTTCAATTAAA+AGG | + | chr4_4:52265455-52265474 | Msa0687440:intron | 25.0% |
| ! | GTATTCATTCTAACAATGTA+TGG | - | chr4_4:52265529-52265548 | None:intergenic | 25.0% |
| ! | ACATTGTTAGAATGAATACA+TGG | + | chr4_4:52265530-52265549 | Msa0687440:intron | 25.0% |
| ! | GAAGTAAAAAATATTGCAAG+CGG | - | chr4_4:52265557-52265576 | None:intergenic | 25.0% |
| !! | AAACAACTTATCTTCCATTT+TGG | + | chr4_4:52265667-52265686 | Msa0687440:three_prime_UTR | 25.0% |
| !! | AACAACTTATCTTCCATTTT+GGG | + | chr4_4:52265668-52265687 | Msa0687440:three_prime_UTR | 25.0% |
| !!! | TTGGTAATTTTAGCAAGAAT+TGG | + | chr4_4:52265753-52265772 | Msa0687440:three_prime_UTR | 25.0% |
| ! | AACAGTTATATGATTCAACT+CGG | - | chr4_4:52265885-52265904 | None:intergenic | 25.0% |
| CATATTGAATGAGAAATTGG+GGG | - | chr4_4:52260973-52260992 | None:intergenic | 30.0% | |
| GCATATTGAATGAGAAATTG+GGG | - | chr4_4:52260974-52260993 | None:intergenic | 30.0% | |
| GGCATATTGAATGAGAAATT+GGG | - | chr4_4:52260975-52260994 | None:intergenic | 30.0% | |
| AGGCATATTGAATGAGAAAT+TGG | - | chr4_4:52260976-52260995 | None:intergenic | 30.0% | |
| ! | AAAAAAGCATACTTTGGTAG+CGG | - | chr4_4:52261015-52261034 | None:intergenic | 30.0% |
| AAATCGAAGCAGAAAAGTAA+AGG | - | chr4_4:52261177-52261196 | None:intergenic | 30.0% | |
| !!! | GACCATTTTGACTTTGATAT+AGG | + | chr4_4:52261803-52261822 | Msa0687440:intron | 30.0% |
| TGCCTATATCAAAGTCAAAA+TGG | - | chr4_4:52261808-52261827 | None:intergenic | 30.0% | |
| AAAGCTGTTCCATCTAAAAA+TGG | + | chr4_4:52262438-52262457 | Msa0687440:CDS | 30.0% | |
| AAGCTGTTCCATCTAAAAAT+GGG | + | chr4_4:52262439-52262458 | Msa0687440:CDS | 30.0% | |
| !! | AGAAGTATCATCTTTCTTTG+CGG | - | chr4_4:52262472-52262491 | None:intergenic | 30.0% |
| ! | AAAGCTGTTCCTTCTAAAAA+TGG | + | chr4_4:52262700-52262719 | Msa0687440:CDS | 30.0% |
| ! | AAGCTGTTCCTTCTAAAAAT+GGG | + | chr4_4:52262701-52262720 | Msa0687440:CDS | 30.0% |
| !! | TTAAGGGTATTATCATCATG+CGG | - | chr4_4:52262806-52262825 | None:intergenic | 30.0% |
| !! | AAAGCTGTTTCTTCCAAAAA+TGG | + | chr4_4:52262914-52262933 | Msa0687440:CDS | 30.0% |
| !! | AAGCTGTTTCTTCCAAAAAT+GGG | + | chr4_4:52262915-52262934 | Msa0687440:CDS | 30.0% |
| AGAACTATCATCTTTCTTTG+CGG | - | chr4_4:52262948-52262967 | None:intergenic | 30.0% | |
| TTAACTCACTTCATCTTCAT+CGG | - | chr4_4:52263213-52263232 | None:intergenic | 30.0% | |
| AGTGAGTTAAACCTTTCATA+TGG | + | chr4_4:52263223-52263242 | Msa0687440:intron | 30.0% | |
| TATGCTACCTTTCTACTAAA+GGG | + | chr4_4:52263283-52263302 | Msa0687440:intron | 30.0% | |
| TAAGAAAGAGGTTAGTGAAT+CGG | + | chr4_4:52263487-52263506 | Msa0687440:CDS | 30.0% | |
| !!! | ATGCTACTACATTTTTTGTG+AGG | - | chr4_4:52263589-52263608 | None:intergenic | 30.0% |
| GGATAAGATGAATATTGACA+AGG | + | chr4_4:52263746-52263765 | Msa0687440:intron | 30.0% | |
| !!! | TTTTTCTGAGGTGTTTTCAA+TGG | - | chr4_4:52263816-52263835 | None:intergenic | 30.0% |
| ATTGAAAACACCTCAGAAAA+AGG | + | chr4_4:52263815-52263834 | Msa0687440:CDS | 30.0% | |
| GATCTGTTTCAACATGAATA+TGG | - | chr4_4:52263924-52263943 | None:intergenic | 30.0% | |
| ATTCATGTTGAAACAGATCA+AGG | + | chr4_4:52263925-52263944 | Msa0687440:intron | 30.0% | |
| ACTGGAGATAATTTAAGTCA+AGG | + | chr4_4:52264039-52264058 | Msa0687440:intron | 30.0% | |
| GCTCAAAGACATTATTTGTT+GGG | + | chr4_4:52264124-52264143 | Msa0687440:CDS | 30.0% | |
| ! | TTTCTCACTCATGTGATTTT+TGG | + | chr4_4:52264188-52264207 | Msa0687440:intron | 30.0% |
| TTCAGAGAAAATTTCTTCCA+AGG | + | chr4_4:52264258-52264277 | Msa0687440:intron | 30.0% | |
| ATGCTAATAGCTTACACTTT+GGG | - | chr4_4:52264376-52264395 | None:intergenic | 30.0% | |
| AAATGGAATCAAAACATGTG+AGG | - | chr4_4:52264657-52264676 | None:intergenic | 30.0% | |
| ! | TTTTGATAAGAATCTTGGAG+AGG | + | chr4_4:52264749-52264768 | Msa0687440:CDS | 30.0% |
| TCAGATAAGAGCTAAATTGA+TGG | + | chr4_4:52264892-52264911 | Msa0687440:intron | 30.0% | |
| ATCCCTAAAGATTATGAATC+TGG | + | chr4_4:52264956-52264975 | Msa0687440:CDS | 30.0% | |
| TTATGAATCTGGTTATTCCA+AGG | + | chr4_4:52264967-52264986 | Msa0687440:CDS | 30.0% | |
| TATGAATCTGGTTATTCCAA+GGG | + | chr4_4:52264968-52264987 | Msa0687440:CDS | 30.0% | |
| ! | AAAGTTTTCAATGCAGCATT+AGG | - | chr4_4:52265025-52265044 | None:intergenic | 30.0% |
| TTACTTCATGTATTGTTCAC+AGG | + | chr4_4:52265080-52265099 | Msa0687440:CDS | 30.0% | |
| !!! | TTGAACTTTTTGCCATTTTC+AGG | + | chr4_4:52265603-52265622 | Msa0687440:intron | 30.0% |
| !!! | TGAACTTTTTGCCATTTTCA+GGG | + | chr4_4:52265604-52265623 | Msa0687440:intron | 30.0% |
| ! | AAGTTTTCAGTATCCCAAAA+TGG | - | chr4_4:52265684-52265703 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTTGCTCAGTTT+TGG | + | chr4_4:52265734-52265753 | Msa0687440:three_prime_UTR | 30.0% |
| TTGGTAAAGATCTTGTGTAT+CGG | + | chr4_4:52265772-52265791 | Msa0687440:three_prime_UTR | 30.0% | |
| ATATCCATCATATATGACTG+AGG | - | chr4_4:52265817-52265836 | None:intergenic | 30.0% | |
| !! | CAGTCATATATGATGGATAT+TGG | + | chr4_4:52265817-52265836 | Msa0687440:three_prime_UTR | 30.0% |
| ATACGAAAAGAAAGGGGTTA+GGG | - | chr4_4:52260842-52260861 | None:intergenic | 35.0% | |
| TATACGAAAAGAAAGGGGTT+AGG | - | chr4_4:52260843-52260862 | None:intergenic | 35.0% | |
| TTGACTTTGATATAGGCAAG+AGG | + | chr4_4:52261810-52261829 | Msa0687440:intron | 35.0% | |
| AAAGAAGCAAAAGGTAGAAG+AGG | + | chr4_4:52261865-52261884 | Msa0687440:CDS | 35.0% | |
| !!! | TCACATTCCCATTTTTAGCT+GGG | - | chr4_4:52262132-52262151 | None:intergenic | 35.0% |
| !!! | TTCACATTCCCATTTTTAGC+TGG | - | chr4_4:52262133-52262152 | None:intergenic | 35.0% |
| ! | GAAGTATCATCTTTCTTTGC+GGG | - | chr4_4:52262471-52262490 | None:intergenic | 35.0% |
| TGAATCTTCTGATGAAGACA+AGG | + | chr4_4:52262515-52262534 | Msa0687440:CDS | 35.0% | |
| GAAGAATCATCTTTCTTTGC+AGG | - | chr4_4:52262733-52262752 | None:intergenic | 35.0% | |
| AGAAGATTCAGATGAAGATG+AGG | + | chr4_4:52262759-52262778 | Msa0687440:CDS | 35.0% | |
| TTCAGATGAAGATGAGGTAT+TGG | + | chr4_4:52262765-52262784 | Msa0687440:intron | 35.0% | |
| ATCTTCTGACGAAGAAGATA+AGG | + | chr4_4:52262985-52263004 | Msa0687440:CDS | 35.0% | |
| TGACGAAGAAGATAAGGTAT+TGG | + | chr4_4:52262991-52263010 | Msa0687440:intron | 35.0% | |
| !! | ACTCACATTTTTAGAGGCTT+TGG | - | chr4_4:52263138-52263157 | None:intergenic | 35.0% |
| TTCTTCATCGGATTCTTCAT+CGG | - | chr4_4:52263189-52263208 | None:intergenic | 35.0% | |
| ATCTTCATCGGATTCTTCAT+CGG | - | chr4_4:52263201-52263220 | None:intergenic | 35.0% | |
| CTATGCTACCTTTCTACTAA+AGG | + | chr4_4:52263282-52263301 | Msa0687440:intron | 35.0% | |
| CTTCTAACCCTTTAGTAGAA+AGG | - | chr4_4:52263293-52263312 | None:intergenic | 35.0% | |
| TGATGAAGATAAGAAACCTG+TGG | + | chr4_4:52263460-52263479 | Msa0687440:CDS | 35.0% | |
| TTCACTAACCTCTTTCTTAG+AGG | - | chr4_4:52263486-52263505 | None:intergenic | 35.0% | |
| ! | TATATGCTGACCTTTTTCTG+AGG | - | chr4_4:52263828-52263847 | None:intergenic | 35.0% |
| AAATAATGTCTTTGAGCCAC+TGG | - | chr4_4:52264121-52264140 | None:intergenic | 35.0% | |
| GGCTCAAAGACATTATTTGT+TGG | + | chr4_4:52264123-52264142 | Msa0687440:CDS | 35.0% | |
| GAAAATTTCTTCCAAGGTTG+CGG | + | chr4_4:52264264-52264283 | Msa0687440:CDS | 35.0% | |
| ! | GATGGAGTATTTAAAGGCTT+TGG | + | chr4_4:52264321-52264340 | Msa0687440:CDS | 35.0% |
| GATGCTAATAGCTTACACTT+TGG | - | chr4_4:52264377-52264396 | None:intergenic | 35.0% | |
| !! | ACTTCCAACTGATTTGTTTC+TGG | + | chr4_4:52264423-52264442 | Msa0687440:intron | 35.0% |
| GATTCCAGAAACAAATCAGT+TGG | - | chr4_4:52264430-52264449 | None:intergenic | 35.0% | |
| TAATAGGCACTTGAGATGAA+TGG | + | chr4_4:52264489-52264508 | Msa0687440:intron | 35.0% | |
| GTATGGAATCAAAACATGTG+AGG | - | chr4_4:52264635-52264654 | None:intergenic | 35.0% | |
| GAATCAAAACATGTGAGGTA+TGG | - | chr4_4:52264630-52264649 | None:intergenic | 35.0% | |
| ! | TGACAAATACTGTTTGAGAC+TGG | - | chr4_4:52264725-52264744 | None:intergenic | 35.0% |
| AGTCTCAAACAGTATTTGTC+AGG | + | chr4_4:52264724-52264743 | Msa0687440:CDS | 35.0% | |
| GTCTCAAACAGTATTTGTCA+GGG | + | chr4_4:52264725-52264744 | Msa0687440:CDS | 35.0% | |
| TCTCAAACAGTATTTGTCAG+GGG | + | chr4_4:52264726-52264745 | Msa0687440:CDS | 35.0% | |
| !! | AGGGGTTTTGATAAGAATCT+TGG | + | chr4_4:52264744-52264763 | Msa0687440:CDS | 35.0% |
| ! | CATAACAGAATAAGAGGTGT+TGG | - | chr4_4:52264867-52264886 | None:intergenic | 35.0% |
| !! | GCTAAATTGATGGAGCATTT+TGG | + | chr4_4:52264902-52264921 | Msa0687440:CDS | 35.0% |
| !! | AAATTGATGGAGCATTTTGG+TGG | + | chr4_4:52264905-52264924 | Msa0687440:CDS | 35.0% |
| ATGAATCTGGTTATTCCAAG+GGG | + | chr4_4:52264969-52264988 | Msa0687440:CDS | 35.0% | |
| CTTCATGAAAGTGAACTTGA+TGG | + | chr4_4:52265154-52265173 | Msa0687440:CDS | 35.0% | |
| ! | GTAGTCTTTTTCCCTGAAAA+TGG | - | chr4_4:52265618-52265637 | None:intergenic | 35.0% |
| ATAGCCTCAGTCATATATGA+TGG | + | chr4_4:52265810-52265829 | Msa0687440:three_prime_UTR | 35.0% | |
| ACTTTAGGCATGTGAAAAGA+AGG | + | chr4_4:52265943-52265962 | Msa0687440:three_prime_UTR | 35.0% | |
| CTTTAGGCATGTGAAAAGAA+GGG | + | chr4_4:52265944-52265963 | Msa0687440:three_prime_UTR | 35.0% | |
| ! | AAGAAAGGGGTTAGGGTTTT+GGG | - | chr4_4:52260835-52260854 | None:intergenic | 40.0% |
| ! | AAAGAAAGGGGTTAGGGTTT+TGG | - | chr4_4:52260836-52260855 | None:intergenic | 40.0% |
| GGAATTGTGAGAAGAGAGTT+AGG | - | chr4_4:52260871-52260890 | None:intergenic | 40.0% | |
| ! | CTGAGAGAGAATTAGGGTTT+TGG | - | chr4_4:52260920-52260939 | None:intergenic | 40.0% |
| GCGGATTTCTTGCTTGATTT+AGG | - | chr4_4:52260996-52261015 | None:intergenic | 40.0% | |
| TTCACTGGAGAAACAACAAC+AGG | - | chr4_4:52261134-52261153 | None:intergenic | 40.0% | |
| TCGAAGCAGAAAAGTAAAGG+TGG | - | chr4_4:52261174-52261193 | None:intergenic | 40.0% | |
| !!! | GGGTTTTAGCTTTGAAGTGT+TGG | + | chr4_4:52261258-52261277 | Msa0687440:intron | 40.0% |
| ! | CTGTTGATTGGTCAAACTGA+TGG | + | chr4_4:52261581-52261600 | Msa0687440:intron | 40.0% |
| AGTGAGTGCAAAGAAGCAAA+AGG | + | chr4_4:52261856-52261875 | Msa0687440:CDS | 40.0% | |
| AAGAAGACCCCAGCTAAAAA+TGG | + | chr4_4:52262121-52262140 | Msa0687440:CDS | 40.0% | |
| AGAAGACCCCAGCTAAAAAT+GGG | + | chr4_4:52262122-52262141 | Msa0687440:CDS | 40.0% | |
| !!! | CACATTCCCATTTTTAGCTG+GGG | - | chr4_4:52262131-52262150 | None:intergenic | 40.0% |
| CACTTTCACTTCTTCCTCAT+CGG | - | chr4_4:52262212-52262231 | None:intergenic | 40.0% | |
| GAACTTGCAGCTTTCTTTGT+GGG | - | chr4_4:52263164-52263183 | None:intergenic | 40.0% | |
| AGAACTTGCAGCTTTCTTTG+TGG | - | chr4_4:52263165-52263184 | None:intergenic | 40.0% | |
| TAACTTATGCCCCACTGTAT+AGG | + | chr4_4:52263346-52263365 | Msa0687440:intron | 40.0% | |
| CTACAATTGTAGTAGCACGT+AGG | + | chr4_4:52263562-52263581 | Msa0687440:intron | 40.0% | |
| TGTTGATGTACGTCTTGCTT+CGG | + | chr4_4:52264293-52264312 | Msa0687440:CDS | 40.0% | |
| ! | GATGGGGATGGAGTATTTAA+AGG | + | chr4_4:52264315-52264334 | Msa0687440:CDS | 40.0% |
| TAAGAATCTTGGAGAGGATG+AGG | + | chr4_4:52264755-52264774 | Msa0687440:CDS | 40.0% | |
| !! | TGATTTTATTTCCCCCCCTT+TGG | + | chr4_4:52264778-52264797 | Msa0687440:intron | 40.0% |
| ATCATTCTGCATGAGCCAAA+GGG | - | chr4_4:52264796-52264815 | None:intergenic | 40.0% | |
| AATCATTCTGCATGAGCCAA+AGG | - | chr4_4:52264797-52264816 | None:intergenic | 40.0% | |
| !! | AGCATTTTGGTGGTACTTGT+GGG | + | chr4_4:52264915-52264934 | Msa0687440:CDS | 40.0% |
| TTGCAAAGAAACATACCCCT+TGG | - | chr4_4:52264987-52265006 | None:intergenic | 40.0% | |
| ! | AACTGTGAACAGTCTGAAGT+AGG | - | chr4_4:52265049-52265068 | None:intergenic | 40.0% |
| TGTTCACAGGTTTGCATACA+TGG | + | chr4_4:52265093-52265112 | Msa0687440:CDS | 40.0% | |
| TGATGGTTATCAGTTGTCAG+TGG | + | chr4_4:52265171-52265190 | Msa0687440:CDS | 40.0% | |
| ACCTTGACTATCTCTAGGTT+TGG | - | chr4_4:52265203-52265222 | None:intergenic | 40.0% | |
| AAACCAAGCTTTGCTTCTGA+AGG | + | chr4_4:52265397-52265416 | Msa0687440:CDS | 40.0% | |
| TTACCTTCAGAAGCAAAGCT+TGG | - | chr4_4:52265403-52265422 | None:intergenic | 40.0% | |
| TAACCAAACATCTGCAAGCT+CGG | - | chr4_4:52265858-52265877 | None:intergenic | 40.0% | |
| GCATGTGAAAAGAAGGGTAA+TGG | + | chr4_4:52265950-52265969 | Msa0687440:intron | 40.0% | |
| GGAAGCTATTCAAAACCCTG+CGG | - | chr4_4:52260943-52260962 | None:intergenic | 45.0% | |
| GAATGAGAAATTGGGGGATG+CGG | - | chr4_4:52260967-52260986 | None:intergenic | 45.0% | |
| !! | GTTGTTTCTCCAGTGAAGTC+TGG | + | chr4_4:52261137-52261156 | Msa0687440:CDS | 45.0% |
| CCTTTCTTTCCAGACTTCAC+TGG | - | chr4_4:52261149-52261168 | None:intergenic | 45.0% | |
| CCAGTGAAGTCTGGAAAGAA+AGG | + | chr4_4:52261146-52261165 | Msa0687440:CDS | 45.0% | |
| CTTTGATATAGGCAAGAGGC+AGG | + | chr4_4:52261814-52261833 | Msa0687440:intron | 45.0% | |
| ! | TACCTTCAACGCCTTTTGCT+TGG | - | chr4_4:52261897-52261916 | None:intergenic | 45.0% |
| GTTGAAGGTAGTCAAGAAGG+AGG | + | chr4_4:52261907-52261926 | Msa0687440:CDS | 45.0% | |
| AGATTCCTCAGAGGATTCCT+CGG | - | chr4_4:52261942-52261961 | None:intergenic | 45.0% | |
| TTAGCTGGGGTCTTCTTTGA+AGG | - | chr4_4:52262118-52262137 | None:intergenic | 45.0% | |
| ! | AGAGTCAGATTCCTCTGAAG+TGG | - | chr4_4:52262173-52262192 | None:intergenic | 45.0% |
| ! | AGATGGAACAGCTTTAGCTG+CGG | - | chr4_4:52262433-52262452 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+TGG | - | chr4_4:52262450-52262469 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+AGG | - | chr4_4:52262450-52262469 | None:intergenic | 45.0% |
| ! | GAAGAAACAGCTTTTGCTGC+AGG | - | chr4_4:52262908-52262927 | None:intergenic | 45.0% |
| ! | TGCGGATACACTCCCATTTT+TGG | - | chr4_4:52262930-52262949 | None:intergenic | 45.0% |
| !! | TTTTTAGAGGCTTTGGCTGC+AGG | - | chr4_4:52263131-52263150 | None:intergenic | 45.0% |
| !! | GGGTGCACTCACATTTTTAG+AGG | - | chr4_4:52263144-52263163 | None:intergenic | 45.0% |
| GCTTTGCATCCTATACAGTG+GGG | - | chr4_4:52263358-52263377 | None:intergenic | 45.0% | |
| GGCTTTGCATCCTATACAGT+GGG | - | chr4_4:52263359-52263378 | None:intergenic | 45.0% | |
| AGGCTTTGCATCCTATACAG+TGG | - | chr4_4:52263360-52263379 | None:intergenic | 45.0% | |
| !!! | CTCTTTTTTGCAACAGCAGC+AGG | - | chr4_4:52263392-52263411 | None:intergenic | 45.0% |
| TGGGAATATGCGTCAATGAC+AGG | + | chr4_4:52263725-52263744 | Msa0687440:intron | 45.0% | |
| GTTGAAACAGATCAAGGACG+TGG | + | chr4_4:52263931-52263950 | Msa0687440:intron | 45.0% | |
| ! | ATGGTTGATGCTGGCAAATC+TGG | + | chr4_4:52263956-52263975 | Msa0687440:CDS | 45.0% |
| ! | TGGTTGATGCTGGCAAATCT+GGG | + | chr4_4:52263957-52263976 | Msa0687440:CDS | 45.0% |
| ! | TTTGGTGTAGCTGGGGTATT+AGG | - | chr4_4:52264093-52264112 | None:intergenic | 45.0% |
| !! | TGGTCTCATTTGGTGTAGCT+GGG | - | chr4_4:52264101-52264120 | None:intergenic | 45.0% |
| ! | TTTGAGCCACTGGTCTCATT+TGG | - | chr4_4:52264111-52264130 | None:intergenic | 45.0% |
| ATGTACGTCTTGCTTCGGAT+GGG | + | chr4_4:52264298-52264317 | Msa0687440:CDS | 45.0% | |
| TGTTGAGTTTGCAACTGCAG+AGG | + | chr4_4:52264347-52264366 | Msa0687440:CDS | 45.0% | |
| ! | CTCTCCGACTTGATTTAGCT+CGG | + | chr4_4:52264532-52264551 | Msa0687440:CDS | 45.0% |
| ! | TCTCCGACTTGATTTAGCTC+GGG | + | chr4_4:52264533-52264552 | Msa0687440:CDS | 45.0% |
| TCTCCCGAGCTAAATCAAGT+CGG | - | chr4_4:52264539-52264558 | None:intergenic | 45.0% | |
| ! | ACTTGATTTAGCTCGGGAGA+GGG | + | chr4_4:52264539-52264558 | Msa0687440:CDS | 45.0% |
| AGTAACTACTCAGCCCAAAG+TGG | + | chr4_4:52264690-52264709 | Msa0687440:intron | 45.0% | |
| TCATTCTGCATGAGCCAAAG+GGG | - | chr4_4:52264795-52264814 | None:intergenic | 45.0% | |
| !! | GAGCATTTTGGTGGTACTTG+TGG | + | chr4_4:52264914-52264933 | Msa0687440:CDS | 45.0% |
| !! | GCATTTTGGTGGTACTTGTG+GGG | + | chr4_4:52264916-52264935 | Msa0687440:CDS | 45.0% |
| TACTTGTGGGGAACCTACAA+GGG | + | chr4_4:52264928-52264947 | Msa0687440:CDS | 45.0% | |
| TTAGGGATTGACACCCTTGT+AGG | - | chr4_4:52264944-52264963 | None:intergenic | 45.0% | |
| GCCAAACCTAGAGATAGTCA+AGG | + | chr4_4:52265199-52265218 | Msa0687440:CDS | 45.0% | |
| CCAGAACCTTGACTATCTCT+AGG | - | chr4_4:52265208-52265227 | None:intergenic | 45.0% | |
| CCTAGAGATAGTCAAGGTTC+TGG | + | chr4_4:52265205-52265224 | Msa0687440:CDS | 45.0% | |
| ! | AGAGATAGTCAAGGTTCTGG+TGG | + | chr4_4:52265208-52265227 | Msa0687440:CDS | 45.0% |
| !! | ACTACTTTTGCCGACGACTA+GGG | + | chr4_4:52265633-52265652 | Msa0687440:CDS | 45.0% |
| TATCCGAGCTTGCAGATGTT+TGG | + | chr4_4:52265852-52265871 | Msa0687440:three_prime_UTR | 45.0% | |
| !! | ATGAAAAAAAAAATTAAAAA+AGG | - | chr4_4:52262875-52262894 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTTTTTTTTTCA+TGG | + | chr4_4:52262874-52262893 | Msa0687440:intron | 5.0% |
| !!! | GGGTTTTGGGCTTGAGGTTT+CGG | - | chr4_4:52260822-52260841 | None:intergenic | 50.0% |
| CTGCGGCTGAGAGAGAATTA+GGG | - | chr4_4:52260926-52260945 | None:intergenic | 50.0% | |
| CTAATTCTCTCTCAGCCGCA+GGG | + | chr4_4:52260925-52260944 | Msa0687440:five_prime_UTR | 50.0% | |
| ! | CTTCAACGCCTTTTGCTTGG+CGG | - | chr4_4:52261894-52261913 | None:intergenic | 50.0% |
| ! | GGCGTTGAAGGTAGTCAAGA+AGG | + | chr4_4:52261904-52261923 | Msa0687440:CDS | 50.0% |
| GAAGGAGGAAAGTAGTTCCG+AGG | + | chr4_4:52261922-52261941 | Msa0687440:CDS | 50.0% | |
| TAGTTCCGAGGAATCCTCTG+AGG | + | chr4_4:52261934-52261953 | Msa0687440:CDS | 50.0% | |
| ! | GGAATCCTCTGAGGAATCTG+AGG | + | chr4_4:52261943-52261962 | Msa0687440:CDS | 50.0% |
| CTCATCCTCAGATTCCTCAG+AGG | - | chr4_4:52261951-52261970 | None:intergenic | 50.0% | |
| ! | CTCTGAGGAATCTGAGGATG+AGG | + | chr4_4:52261949-52261968 | Msa0687440:CDS | 50.0% |
| !! | GATTCCTCTGAAGTGGTCTC+TGG | - | chr4_4:52262166-52262185 | None:intergenic | 50.0% |
| CACTTCTTCCTCATCGGAAG+AGG | - | chr4_4:52262206-52262225 | None:intergenic | 50.0% | |
| ! | GATGGAACAGCTTTAGCTGC+GGG | - | chr4_4:52262432-52262451 | None:intergenic | 50.0% |
| ! | GAAGGAACAGCTTTAGCTGC+AGG | - | chr4_4:52262694-52262713 | None:intergenic | 50.0% |
| ! | ACCTGTGGCCTCTAAGAAAG+AGG | + | chr4_4:52263475-52263494 | Msa0687440:CDS | 50.0% |
| ACCTCTTTCTTAGAGGCCAC+AGG | - | chr4_4:52263479-52263498 | None:intergenic | 50.0% | |
| ! | GAGTGATTCGTCTGATGACG+AGG | + | chr4_4:52263511-52263530 | Msa0687440:CDS | 50.0% |
| ACAGATCAAGGACGTGGAGA+TGG | + | chr4_4:52263937-52263956 | Msa0687440:intron | 50.0% | |
| !! | GGTCTCATTTGGTGTAGCTG+GGG | - | chr4_4:52264100-52264119 | None:intergenic | 50.0% |
| !! | CTGGTCTCATTTGGTGTAGC+TGG | - | chr4_4:52264102-52264121 | None:intergenic | 50.0% |
| GCTACACCAAATGAGACCAG+TGG | + | chr4_4:52264102-52264121 | Msa0687440:CDS | 50.0% | |
| AACGTTTCACGTCGAAGGAC+AGG | - | chr4_4:52264152-52264171 | None:intergenic | 50.0% | |
| GTCAGAACGTTTCACGTCGA+AGG | - | chr4_4:52264157-52264176 | None:intergenic | 50.0% | |
| TTTCTTCCAAGGTTGCGGAG+AGG | + | chr4_4:52264269-52264288 | Msa0687440:CDS | 50.0% | |
| GATGTACGTCTTGCTTCGGA+TGG | + | chr4_4:52264297-52264316 | Msa0687440:CDS | 50.0% | |
| TGTACGTCTTGCTTCGGATG+GGG | + | chr4_4:52264299-52264318 | Msa0687440:CDS | 50.0% | |
| GAGCACGATGCAACAGTTCT+TGG | - | chr4_4:52264515-52264534 | None:intergenic | 50.0% | |
| ! | GACTTGATTTAGCTCGGGAG+AGG | + | chr4_4:52264538-52264557 | Msa0687440:CDS | 50.0% |
| ! | CTTGATTTAGCTCGGGAGAG+GGG | + | chr4_4:52264540-52264559 | Msa0687440:CDS | 50.0% |
| AACTACTCAGCCCAAAGTGG+TGG | + | chr4_4:52264693-52264712 | Msa0687440:CDS | 50.0% | |
| ATTCTGCATGAGCCAAAGGG+GGG | - | chr4_4:52264793-52264812 | None:intergenic | 50.0% | |
| CATTCTGCATGAGCCAAAGG+GGG | - | chr4_4:52264794-52264813 | None:intergenic | 50.0% | |
| GTACTTGTGGGGAACCTACA+AGG | + | chr4_4:52264927-52264946 | Msa0687440:CDS | 50.0% | |
| TGCAGCATTAGGAGAAGCAG+TGG | - | chr4_4:52265014-52265033 | None:intergenic | 50.0% | |
| ! | AGTCAAGGTTCTGGTGGTAG+AGG | + | chr4_4:52265214-52265233 | Msa0687440:CDS | 50.0% |
| TTTGGTGGAGGTGGAAGAAG+CGG | + | chr4_4:52265265-52265284 | Msa0687440:CDS | 50.0% | |
| !! | AGGAGGTCGATTTGGTGGAA+GGG | + | chr4_4:52265321-52265340 | Msa0687440:CDS | 50.0% |
| !! | CGATTTGGTGGAAGGGATAG+TGG | + | chr4_4:52265328-52265347 | Msa0687440:CDS | 50.0% |
| ! | TTTGGTGGAAGGGATAGTGG+CGG | + | chr4_4:52265331-52265350 | Msa0687440:CDS | 50.0% |
| !! | GACTACTTTTGCCGACGACT+AGG | + | chr4_4:52265632-52265651 | Msa0687440:CDS | 50.0% |
| AAAACTGCCACCCTAGTCGT+CGG | - | chr4_4:52265646-52265665 | None:intergenic | 50.0% | |
| !!! | GGGTTAGGGTTTTGGGCTTG+AGG | - | chr4_4:52260828-52260847 | None:intergenic | 55.0% |
| ! | GCAGAGAGAGAGAGAGTGTG+AGG | - | chr4_4:52260892-52260911 | None:intergenic | 55.0% |
| CCTGCGGCTGAGAGAGAATT+AGG | - | chr4_4:52260927-52260946 | None:intergenic | 55.0% | |
| CCTAATTCTCTCTCAGCCGC+AGG | + | chr4_4:52260924-52260943 | Msa0687440:five_prime_UTR | 55.0% | |
| TGAGAAATTGGGGGATGCGG+CGG | - | chr4_4:52260964-52260983 | None:intergenic | 55.0% | |
| TATAGGCAAGAGGCAGGCTG+AGG | + | chr4_4:52261820-52261839 | Msa0687440:intron | 55.0% | |
| GCAGGCTGAGGAAGAAGTCA+AGG | + | chr4_4:52261832-52261851 | Msa0687440:CDS | 55.0% | |
| AGAGGTTGCCGCCAAGCAAA+AGG | + | chr4_4:52261883-52261902 | Msa0687440:CDS | 55.0% | |
| !! | CGCCAAGCAAAAGGCGTTGA+AGG | + | chr4_4:52261892-52261911 | Msa0687440:CDS | 55.0% |
| ! | GGAGCAGGAGCTTTTGCAAC+AGG | - | chr4_4:52262097-52262116 | None:intergenic | 55.0% |
| ! | GGGGTCTTCTTTGAAGGAGC+AGG | - | chr4_4:52262112-52262131 | None:intergenic | 55.0% |
| !! | CTCTGAAGTGGTCTCTGGCT+GGG | - | chr4_4:52262161-52262180 | None:intergenic | 55.0% |
| TGACAGCTCCTCTTCCGATG+AGG | + | chr4_4:52262195-52262214 | Msa0687440:CDS | 55.0% | |
| ACAGCAGCAGGCTTAGACAC+AGG | - | chr4_4:52263380-52263399 | None:intergenic | 55.0% | |
| TTCCGACTCTGACGAGAGTG+AGG | + | chr4_4:52263773-52263792 | Msa0687440:CDS | 55.0% | |
| CTCCTCACTCTCGTCAGAGT+CGG | - | chr4_4:52263778-52263797 | None:intergenic | 55.0% | |
| ! | GACGTGGAGATGGTTGATGC+TGG | + | chr4_4:52263947-52263966 | Msa0687440:CDS | 55.0% |
| CAACAACCTCTCCGCAACCT+TGG | - | chr4_4:52264278-52264297 | None:intergenic | 55.0% | |
| ! | TCAGCCCAAAGTGGTGGAAG+AGG | + | chr4_4:52264699-52264718 | Msa0687440:CDS | 55.0% |
| CTGGCCTCTTCCACCACTTT+GGG | - | chr4_4:52264706-52264725 | None:intergenic | 55.0% | |
| ! | ACTGGCCTCTTCCACCACTT+TGG | - | chr4_4:52264707-52264726 | None:intergenic | 55.0% |
| TTCTGCATGAGCCAAAGGGG+GGG | - | chr4_4:52264792-52264811 | None:intergenic | 55.0% | |
| ! | CAAGGTTCTGGTGGTAGAGG+TGG | + | chr4_4:52265217-52265236 | Msa0687440:CDS | 55.0% |
| !! | AGGAGTGGTGGTGGTCGATT+TGG | + | chr4_4:52265247-52265266 | Msa0687440:CDS | 55.0% |
| !! | AGTGGTGGTGGTCGATTTGG+TGG | + | chr4_4:52265250-52265269 | Msa0687440:CDS | 55.0% |
| ! | GGTGGAAGAAGCGGTGGATT+TGG | + | chr4_4:52265274-52265293 | Msa0687440:CDS | 55.0% |
| ! | GGAAGAAGCGGTGGATTTGG+TGG | + | chr4_4:52265277-52265296 | Msa0687440:CDS | 55.0% |
| !! | GAAGCGGTGGATTTGGTGGT+AGG | + | chr4_4:52265281-52265300 | Msa0687440:CDS | 55.0% |
| !! | GGTGGATTTGGTGGTAGGAG+TGG | + | chr4_4:52265286-52265305 | Msa0687440:CDS | 55.0% |
| !! | GGATTTGGTGGTAGGAGTGG+TGG | + | chr4_4:52265289-52265308 | Msa0687440:CDS | 55.0% |
| AGAGGAGGAGGAGGTCGATT+TGG | + | chr4_4:52265313-52265332 | Msa0687440:CDS | 55.0% | |
| !! | GAGGAGGTCGATTTGGTGGA+AGG | + | chr4_4:52265320-52265339 | Msa0687440:CDS | 55.0% |
| ! | ACTTTTGCCGACGACTAGGG+TGG | + | chr4_4:52265636-52265655 | Msa0687440:exon | 55.0% |
| !! | CCTCTGAAGTGGTCTCTGGC+TGG | - | chr4_4:52262162-52262181 | None:intergenic | 60.0% |
| CCAGCCAGAGACCACTTCAG+AGG | + | chr4_4:52262159-52262178 | Msa0687440:CDS | 60.0% | |
| GGCTGCAGGTTTCTGAGCCA+AGG | - | chr4_4:52263117-52263136 | None:intergenic | 60.0% | |
| CGACTCTGACGAGAGTGAGG+AGG | + | chr4_4:52263776-52263795 | Msa0687440:CDS | 60.0% | |
| CGAGAGTGAGGAGGAGAGTG+AGG | + | chr4_4:52263785-52263804 | Msa0687440:CDS | 60.0% | |
| CGTCTTGCTTCGGATGGGGA+TGG | + | chr4_4:52264303-52264322 | Msa0687440:CDS | 60.0% | |
| ! | GGTTCTGGTGGTAGAGGTGG+AGG | + | chr4_4:52265220-52265239 | Msa0687440:CDS | 60.0% |
| TCTGGTGGTAGAGGTGGAGG+TGG | + | chr4_4:52265223-52265242 | Msa0687440:CDS | 60.0% | |
| GTGGTAGAGGTGGAGGTGGA+AGG | + | chr4_4:52265227-52265246 | Msa0687440:CDS | 60.0% | |
| AGAGGTGGAGGTGGAAGGAG+TGG | + | chr4_4:52265232-52265251 | Msa0687440:CDS | 60.0% | |
| !! | GGTGGTGGTCGATTTGGTGG+AGG | + | chr4_4:52265253-52265272 | Msa0687440:CDS | 60.0% |
| !! | GGTGGTCGATTTGGTGGAGG+TGG | + | chr4_4:52265256-52265275 | Msa0687440:CDS | 60.0% |
| ! | GGTGGTAGGAGTGGTGGAAG+AGG | + | chr4_4:52265295-52265314 | Msa0687440:CDS | 60.0% |
| ! | GGTAGGAGTGGTGGAAGAGG+AGG | + | chr4_4:52265298-52265317 | Msa0687440:CDS | 60.0% |
| ! | AGGAGTGGTGGAAGAGGAGG+AGG | + | chr4_4:52265301-52265320 | Msa0687440:CDS | 60.0% |
| ! | AGTGGTGGAAGAGGAGGAGG+AGG | + | chr4_4:52265304-52265323 | Msa0687440:CDS | 60.0% |
| !! | GGAGGAGGAGGTCGATTTGG+TGG | + | chr4_4:52265316-52265335 | Msa0687440:CDS | 60.0% |
| ! | GGAAGGGATAGTGGCGGTAG+AGG | + | chr4_4:52265337-52265356 | Msa0687440:CDS | 60.0% |
| ! | AGGGATAGTGGCGGTAGAGG+TGG | + | chr4_4:52265340-52265359 | Msa0687440:CDS | 60.0% |
| AGAGGTGGTCGAGGAGGAAG+AGG | + | chr4_4:52265355-52265374 | Msa0687440:CDS | 60.0% | |
| CTGCAAGCTCGGATAGCTGC+AGG | - | chr4_4:52265847-52265866 | None:intergenic | 60.0% | |
| GGTGGAGGTGGAAGGAGTGG+TGG | + | chr4_4:52265235-52265254 | Msa0687440:CDS | 65.0% | |
| GGAGGTGGAAGGAGTGGTGG+TGG | + | chr4_4:52265238-52265257 | Msa0687440:CDS | 65.0% | |
| GGTGGAGGTGGAAGAAGCGG+TGG | + | chr4_4:52265268-52265287 | Msa0687440:CDS | 65.0% | |
| AGTGGCGGTAGAGGTGGTCG+AGG | + | chr4_4:52265346-52265365 | Msa0687440:CDS | 65.0% | |
| GGTGGTCGAGGAGGAAGAGG+TGG | + | chr4_4:52265358-52265377 | Msa0687440:CDS | 65.0% | |
| CGAGGAGGAAGAGGTGGTCG+TGG | + | chr4_4:52265364-52265383 | Msa0687440:CDS | 65.0% | |
| GGAGGAAGAGGTGGTCGTGG+AGG | + | chr4_4:52265367-52265386 | Msa0687440:CDS | 65.0% | |
| GGCGGTAGAGGTGGTCGAGG+AGG | + | chr4_4:52265349-52265368 | Msa0687440:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 52260780 | 52266008 | 52260780 | ID=Msa0687440;Name=Msa0687440 |
| chr4_4 | mRNA | 52260780 | 52266008 | 52260780 | ID=Msa0687440-mRNA-1;Parent=Msa0687440;Name=Msa0687440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=210|1|0.94|1|0.94|0.88|18|335|670 |
| chr4_4 | exon | 52260780 | 52261022 | 52260780 | ID=Msa0687440-mRNA-1:exon:13641;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52261119 | 52261167 | 52261119 | ID=Msa0687440-mRNA-1:exon:13642;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52261825 | 52261970 | 52261825 | ID=Msa0687440-mRNA-1:exon:13643;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52262091 | 52262228 | 52262091 | ID=Msa0687440-mRNA-1:exon:13644;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52262426 | 52262536 | 52262426 | ID=Msa0687440-mRNA-1:exon:13645;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52262688 | 52262780 | 52262688 | ID=Msa0687440-mRNA-1:exon:13646;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52262902 | 52263006 | 52262902 | ID=Msa0687440-mRNA-1:exon:13647;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52263125 | 52263223 | 52263125 | ID=Msa0687440-mRNA-1:exon:13648;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52263368 | 52263532 | 52263368 | ID=Msa0687440-mRNA-1:exon:13649;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52263747 | 52263836 | 52263747 | ID=Msa0687440-mRNA-1:exon:13650;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52263941 | 52263988 | 52263941 | ID=Msa0687440-mRNA-1:exon:13651;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52264090 | 52264178 | 52264090 | ID=Msa0687440-mRNA-1:exon:13652;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52264263 | 52264380 | 52264263 | ID=Msa0687440-mRNA-1:exon:13653;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52264495 | 52264586 | 52264495 | ID=Msa0687440-mRNA-1:exon:13654;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52264692 | 52264776 | 52264692 | ID=Msa0687440-mRNA-1:exon:13655;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52264896 | 52265418 | 52264896 | ID=Msa0687440-mRNA-1:exon:13656;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52265625 | 52265966 | 52265625 | ID=Msa0687440-mRNA-1:exon:13657;Parent=Msa0687440-mRNA-1 |
| chr4_4 | exon | 52265987 | 52266008 | 52265987 | ID=Msa0687440-mRNA-1:exon:13658;Parent=Msa0687440-mRNA-1 |
| chr4_4 | five_prime_UTR | 52260780 | 52260989 | 52260780 | ID=Msa0687440-mRNA-1:five_prime_utr;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52260990 | 52261022 | 52260990 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52261119 | 52261167 | 52261119 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52261825 | 52261970 | 52261825 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52262091 | 52262228 | 52262091 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52262426 | 52262536 | 52262426 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52262688 | 52262780 | 52262688 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52262902 | 52263006 | 52262902 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52263125 | 52263223 | 52263125 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52263368 | 52263532 | 52263368 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52263747 | 52263836 | 52263747 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52263941 | 52263988 | 52263941 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52264090 | 52264178 | 52264090 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52264263 | 52264380 | 52264263 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52264495 | 52264586 | 52264495 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52264692 | 52264776 | 52264692 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52264896 | 52265418 | 52264896 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | CDS | 52265625 | 52265653 | 52265625 | ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1 |
| chr4_4 | three_prime_UTR | 52265654 | 52265966 | 52265654 | ID=Msa0687440-mRNA-1:three_prime_utr;Parent=Msa0687440-mRNA-1 |
| chr4_4 | three_prime_UTR | 52265987 | 52266008 | 52265987 | ID=Msa0687440-mRNA-1:three_prime_utr;Parent=Msa0687440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
