AlfalfaGEDB | Msa0687440

M. sativa cultivar zhongmu-4 / Msa0687440

KEGG: K11294
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0687440	CAA61298.1	91.988	674	11	5	1	670	1	635	0.0	1158

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0687440	sp\|Q7XTT4\|NUCL2_ORYSJ	48.201	278	92	8	336	603	408	643	3.24e-67	237

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0687440	Q40363	91.988	674	11	5	1	670	1	635	0.0	1158

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030200	Msa0687440	0.829118	6.154408e-55	-8.615850e-47
Msa0164770	Msa0687440	0.867859	1.003029e-65	-8.615850e-47
Msa0170200	Msa0687440	0.834980	2.189994e-56	-8.615850e-47
Msa0188440	Msa0687440	0.824335	8.535835e-54	-8.615850e-47
Msa0190350	Msa0687440	0.836640	8.314260e-57	-8.615850e-47
Msa0223830	Msa0687440	-0.802037	6.783295e-49	-8.615850e-47
Msa0231030	Msa0687440	0.816545	5.233222e-52	-8.615850e-47
Msa0297630	Msa0687440	0.810160	1.323616e-50	-8.615850e-47
Msa0482200	Msa0687440	0.803466	3.440495e-49	-8.615850e-47
Msa0485510	Msa0687440	0.839287	1.734211e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0687440	MtrunA17_Chr4g0038111	81.010	574	49	7	29	595	4	524	0.0	639
Msa0687440	MtrunA17_Chr1g0163591	37.288	295	119	7	342	618	415	661	1.05e-34	140
Msa0687440	MtrunA17_Chr1g0163591	49.306	144	68	4	349	488	269	411	1.24e-34	140
Msa0687440	MtrunA17_Chr8g0350331	88.000	75	9	0	32	106	8	82	3.15e-23	95.1
Msa0687440	MtrunA17_Chr3g0098471	40.179	224	60	6	208	427	30	183	2.09e-22	95.1
Msa0687440	MtrunA17_Chr3g0098471	48.246	114	21	5	29	140	22	99	3.01e-12	65.9
Msa0687440	MtrunA17_Chr3g0098471	66.071	56	16	1	122	177	47	99	8.03e-12	64.7
Msa0687440	MtrunA17_Chr4g0050311	31.395	172	102	6	310	471	3	168	3.58e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0687440	AT3G18610.1	44.807	337	130	13	339	670	350	635	6.62e-65	226
Msa0687440	AT3G18610.3	44.807	337	130	13	339	670	320	605	7.42e-65	225
Msa0687440	AT3G18610.2	44.807	337	130	13	339	670	290	575	9.61e-65	224
Msa0687440	AT1G45100.1	45.238	84	46	0	362	445	236	319	4.97e-12	69.3

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Find 197 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCCACCCTAGTCGT+CGG	0.640972	4_4:-52265643	None:intergenic
AAACAACTTATCTTCCATTT+TGG	0.105937	4_4:+52265667	Msa0687440:three_prime_UTR
AAACCAAGCTTTGCTTCTGA+AGG	0.523386	4_4:+52265397	Msa0687440:CDS
AAAGAAAGGGGTTAGGGTTT+TGG	0.191255	4_4:-52260833	None:intergenic
AAAGAAGCAAAAGGTAGAAG+AGG	0.600905	4_4:+52261865	Msa0687440:CDS
AAATAATGTCTTTGAGCCAC+TGG	0.502495	4_4:-52264118	None:intergenic
AACAGTTATATGATTCAACT+CGG	0.665142	4_4:-52265882	None:intergenic
AACCAGATTCATAATCTTTA+GGG	0.230306	4_4:-52264958	None:intergenic
AACGTTTCACGTCGAAGGAC+AGG	0.443778	4_4:-52264149	None:intergenic
AACTACTCAGCCCAAAGTGG+TGG	0.591190	4_4:+52264693	Msa0687440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATATTGAATGAGAAATTGG+GGG	-	chr4_4:52260973-52260992	None:intergenic	30.0%
GCATATTGAATGAGAAATTG+GGG	-	chr4_4:52260974-52260993	None:intergenic	30.0%
GGCATATTGAATGAGAAATT+GGG	-	chr4_4:52260975-52260994	None:intergenic	30.0%
AGGCATATTGAATGAGAAAT+TGG	-	chr4_4:52260976-52260995	None:intergenic	30.0%
AAATCGAAGCAGAAAAGTAA+AGG	-	chr4_4:52261177-52261196	None:intergenic	30.0%
TGCCTATATCAAAGTCAAAA+TGG	-	chr4_4:52261808-52261827	None:intergenic	30.0%
AAAGCTGTTCCATCTAAAAA+TGG	+	chr4_4:52262438-52262457	Msa0687440:CDS	30.0%
AAGCTGTTCCATCTAAAAAT+GGG	+	chr4_4:52262439-52262458	Msa0687440:CDS	30.0%
AGAACTATCATCTTTCTTTG+CGG	-	chr4_4:52262948-52262967	None:intergenic	30.0%
TTAACTCACTTCATCTTCAT+CGG	-	chr4_4:52263213-52263232	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	52260780	52266008	52260780	ID=Msa0687440;Name=Msa0687440
chr4_4	mRNA	52260780	52266008	52260780	ID=Msa0687440-mRNA-1;Parent=Msa0687440;Name=Msa0687440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=210\|1\|0.94\|1\|0.94\|0.88\|18\|335\|670
chr4_4	exon	52260780	52261022	52260780	ID=Msa0687440-mRNA-1:exon:13641;Parent=Msa0687440-mRNA-1
chr4_4	exon	52261119	52261167	52261119	ID=Msa0687440-mRNA-1:exon:13642;Parent=Msa0687440-mRNA-1
chr4_4	exon	52261825	52261970	52261825	ID=Msa0687440-mRNA-1:exon:13643;Parent=Msa0687440-mRNA-1
chr4_4	exon	52262091	52262228	52262091	ID=Msa0687440-mRNA-1:exon:13644;Parent=Msa0687440-mRNA-1
chr4_4	exon	52262426	52262536	52262426	ID=Msa0687440-mRNA-1:exon:13645;Parent=Msa0687440-mRNA-1
chr4_4	exon	52262688	52262780	52262688	ID=Msa0687440-mRNA-1:exon:13646;Parent=Msa0687440-mRNA-1
chr4_4	exon	52262902	52263006	52262902	ID=Msa0687440-mRNA-1:exon:13647;Parent=Msa0687440-mRNA-1
chr4_4	exon	52263125	52263223	52263125	ID=Msa0687440-mRNA-1:exon:13648;Parent=Msa0687440-mRNA-1
chr4_4	exon	52263368	52263532	52263368	ID=Msa0687440-mRNA-1:exon:13649;Parent=Msa0687440-mRNA-1
chr4_4	exon	52263747	52263836	52263747	ID=Msa0687440-mRNA-1:exon:13650;Parent=Msa0687440-mRNA-1
chr4_4	exon	52263941	52263988	52263941	ID=Msa0687440-mRNA-1:exon:13651;Parent=Msa0687440-mRNA-1
chr4_4	exon	52264090	52264178	52264090	ID=Msa0687440-mRNA-1:exon:13652;Parent=Msa0687440-mRNA-1
chr4_4	exon	52264263	52264380	52264263	ID=Msa0687440-mRNA-1:exon:13653;Parent=Msa0687440-mRNA-1
chr4_4	exon	52264495	52264586	52264495	ID=Msa0687440-mRNA-1:exon:13654;Parent=Msa0687440-mRNA-1
chr4_4	exon	52264692	52264776	52264692	ID=Msa0687440-mRNA-1:exon:13655;Parent=Msa0687440-mRNA-1
chr4_4	exon	52264896	52265418	52264896	ID=Msa0687440-mRNA-1:exon:13656;Parent=Msa0687440-mRNA-1
chr4_4	exon	52265625	52265966	52265625	ID=Msa0687440-mRNA-1:exon:13657;Parent=Msa0687440-mRNA-1
chr4_4	exon	52265987	52266008	52265987	ID=Msa0687440-mRNA-1:exon:13658;Parent=Msa0687440-mRNA-1
chr4_4	five_prime_UTR	52260780	52260989	52260780	ID=Msa0687440-mRNA-1:five_prime_utr;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52260990	52261022	52260990	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52261119	52261167	52261119	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52261825	52261970	52261825	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52262091	52262228	52262091	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52262426	52262536	52262426	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52262688	52262780	52262688	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52262902	52263006	52262902	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52263125	52263223	52263125	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52263368	52263532	52263368	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52263747	52263836	52263747	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52263941	52263988	52263941	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52264090	52264178	52264090	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52264263	52264380	52264263	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52264495	52264586	52264495	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52264692	52264776	52264692	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52264896	52265418	52264896	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	CDS	52265625	52265653	52265625	ID=Msa0687440-mRNA-1:cds;Parent=Msa0687440-mRNA-1
chr4_4	three_prime_UTR	52265654	52265966	52265654	ID=Msa0687440-mRNA-1:three_prime_utr;Parent=Msa0687440-mRNA-1
chr4_4	three_prime_UTR	52265987	52266008	52265987	ID=Msa0687440-mRNA-1:three_prime_utr;Parent=Msa0687440-mRNA-1

Gene Sequence

>Msa0687440

ATGCCTAAATCAAGCAAGAAATCCGCTACCAAAGTTGATGCTGCTCCTGTTGTTGTTTCTCCAGTGAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTCAAGGCAGTGAGTGCAAAGAAGCAAAAGGTAGAAGAGGTTGCCGCCAAGCAAAAGGCGTTGAAGGTAGTCAAGAAGGAGGAAAGTAGTTCCGAGGAATCCTCTGAGGAATCTGAGGATGAGAAACCTGTTGCAAAAGCTCCTGCTCCTTCAAAGAAGACCCCAGCTAAAAATGGGAATGTGAAGAAAGCCCAGCCAGAGACCACTTCAGAGGAATCTGACTCTGATGACAGCTCCTCTTCCGATGAGGAAGAAGTGAAAAAACCCGCAGCTAAAGCTGTTCCATCTAAAAATGGGAGTGCACCCGCAAAGAAAGATGATACTTCTGAAGAAGATTCTGATGAATCTTCTGAATCTTCTGATGAAGACAAGAAACCTGCAGCTAAAGCTGTTCCTTCTAAAAATGGGAGTGCACCTGCAAAGAAAGATGATTCTTCTGAAGAAGAAGATTCAGATGAAGATGAGAAACCTGCAGCAAAAGCTGTTTCTTCCAAAAATGGGAGTGTATCCGCAAAGAAAGATGATAGTTCTTCTGATGAAGACTCTGAATCTTCTGACGAAGAAGATAAGAAACCTGCAGCCAAAGCCTCTAAAAATGTGAGTGCACCCACAAAGAAAGCTGCAAGTTCTTCCGATGAAGAATCCGATGAAGAATCCGATGAAGATGAAGATGCAAAGCCTGTGTCTAAGCCTGCTGCTGTTGCAAAAAAGAGTAAGAAAGATAGCTCAGATTCTGACGATGAAGATGATGATAGCAGCTCTGATGAAGATAAGAAACCTGTGGCCTCTAAGAAAGAGGTTAGTGAATCGGAGAGTGATTCGTCTGATGACGAGGATAAGATGAATATTGACAAGGATAGTTCCGACTCTGACGAGAGTGAGGAGGAGAGTGAGGATGAACCATTGAAAACACCTCAGAAAAAGATCAAGGACGTGGAGATGGTTGATGCTGGCAAATCTGGGAAAAAAGCTCCTAATACCCCAGCTACACCAAATGAGACCAGTGGCTCAAAGACATTATTTGTTGGGAACCTGTCCTTCGACGTGAAACGTTCTGACATAGAAAATTTCTTCCAAGGTTGCGGAGAGGTTGTTGATGTACGTCTTGCTTCGGATGGGGATGGAGTATTTAAAGGCTTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAAAGTGCACTTGAGATGAATGGCCAAGAACTGTTGCATCGTGCTCTCCGACTTGATTTAGCTCGGGAGAGGGGTGCATTTACTCCTAATAATAATAGTAACTACTCAGCCCAAAGTGGTGGAAGAGGCCAGTCTCAAACAGTATTTGTCAGGGGTTTTGATAAGAATCTTGGAGAGGATGAGATAAGAGCTAAATTGATGGAGCATTTTGGTGGTACTTGTGGGGAACCTACAAGGGTGTCAATCCCTAAAGATTATGAATCTGGTTATTCCAAGGGGTATGTTTCTTTGCAAAATTCCACTGCTTCTCCTAATGCTGCATTGAAAACTTTACCTACTTCAGACTGTTCACAGTTGAAAATTTTACTTACTTCATGTATTGTTCACAGGTTTGCATACATGGACTTCAAAGATTCTGACAGCTTTAGCAAAGCTCTTGAACTTCATGAAAGTGAACTTGATGGTTATCAGTTGTCAGTGGATGAAGCCAAACCTAGAGATAGTCAAGGTTCTGGTGGTAGAGGTGGAGGTGGAAGGAGTGGTGGTGGTCGATTTGGTGGAGGTGGAAGAAGCGGTGGATTTGGTGGTAGGAGTGGTGGAAGAGGAGGAGGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAGGTGGTCGAGGAGGAAGAGGTGGTCGTGGAGGATTCAATAAACCAAGCTTTGCTTCTGAAGGGAAAAAGACTACTTTTGCCGACGACTAG

Protein sequence

>Msa0687440

MPKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEVKAVSAKKQKVEEVAAKQKALKVVKKEESSSEESSEESEDEKPVAKAPAPSKKTPAKNGNVKKAQPETTSEESDSDDSSSSDEEEVKKPAAKAVPSKNGSAPAKKDDTSEEDSDESSESSDEDKKPAAKAVPSKNGSAPAKKDDSSEEEDSDEDEKPAAKAVSSKNGSVSAKKDDSSSDEDSESSDEEDKKPAAKASKNVSAPTKKAASSSDEESDEESDEDEDAKPVSKPAAVAKKSKKDSSDSDDEDDDSSSDEDKKPVASKKEVSESESDSSDDEDKMNIDKDSSDSDESEEESEDEPLKTPQKKIKDVEMVDAGKSGKKAPNTPATPNETSGSKTLFVGNLSFDVKRSDIENFFQGCGEVVDVRLASDGDGVFKGFGHVEFATAEAAQSALEMNGQELLHRALRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDYESGYSKGYVSLQNSTASPNAALKTLPTSDCSQLKILLTSCIVHRFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQGSGGRGGGGRSGGGRFGGGGRSGGFGGRSGGRGGGGRFGGRDSGGRGGRGGRGGRGGFNKPSFASEGKKTTFADD*