AlfalfaGEDB | Msa1457660

M. sativa cultivar zhongmu-4 / Msa1457660

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457660	XP_003592641.2	94.044	319	10	4	1	318	2	312	0.0	603

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457660	sp\|Q9C9G7\|MYB62_ARATH	64.179	201	58	1	23	223	16	202	1.29e-84	259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457660	A0A396JYW1	94.044	319	10	4	1	318	2	312	0.0	603

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TFs/TRs:

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Gene ID	Type	Classification
Msa1457660	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0138290	Msa1457660	0.845625	3.612818e-59	-8.615850e-47
Msa0815320	Msa1457660	0.824908	6.254493e-54	-8.615850e-47
Msa0818010	Msa1457660	0.803772	2.972211e-49	-8.615850e-47
Msa1006250	Msa1457660	0.810292	1.239520e-50	-8.615850e-47
Msa1409770	Msa1457660	0.881550	2.187392e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457660	MtrunA17_Chr1g0209661	94.044	319	10	4	1	318	2	312	0.0	603
Msa1457660	MtrunA17_Chr1g0194291	66.667	156	48	2	13	166	6	159	3.41e-74	229
Msa1457660	MtrunA17_Chr1g0194301	55.090	167	71	1	26	188	33	199	1.34e-68	215
Msa1457660	MtrunA17_Chr2g0293911	72.857	140	38	0	20	159	18	157	1.55e-67	214
Msa1457660	MtrunA17_Chr4g0068921	69.784	139	42	0	21	159	19	157	4.23e-65	203
Msa1457660	MtrunA17_Chr6g0450101	73.333	120	32	0	15	134	3	122	6.47e-65	203
Msa1457660	MtrunA17_Chr7g0228231	75.630	119	28	1	14	132	3	120	1.01e-64	202
Msa1457660	MtrunA17_Chr1g0168661	69.091	110	34	0	22	131	17	126	3.14e-53	175
Msa1457660	MtrunA17_Chr1g0186061	66.667	108	36	0	22	129	16	123	3.91e-51	169
Msa1457660	MtrunA17_Chr2g0327821	61.468	109	42	0	23	131	3	111	2.87e-47	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457660	AT1G68320.1	64.179	201	58	1	23	223	16	202	1.31e-85	259
Msa1457660	AT1G25340.1	73.856	153	40	0	9	161	1	153	7.02e-82	249
Msa1457660	AT1G25340.2	71.242	153	39	1	9	161	1	148	2.19e-76	235
Msa1457660	AT1G25340.3	71.242	153	39	1	9	161	1	148	5.99e-76	235
Msa1457660	AT1G48000.1	68.310	142	45	0	25	166	31	172	5.92e-71	220
Msa1457660	AT5G49620.1	65.190	158	55	0	15	172	15	172	3.26e-66	210
Msa1457660	AT2G47190.1	60.000	145	58	0	21	165	15	159	7.49e-66	208
Msa1457660	AT5G40350.1	57.303	178	68	4	25	194	16	193	2.98e-65	204
Msa1457660	AT3G27810.1	73.504	117	31	0	23	139	17	133	1.23e-64	203
Msa1457660	AT3G06490.1	68.085	141	45	0	19	159	12	152	7.70e-63	202

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Find 63 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATTCATATTTGTCA+TGG	0.493144	tig0039061:-23405	None:intergenic
AAAATTGCTCAGCATTTACC+AGG	0.522850	tig0039061:+23209	Msa1457660:CDS
AAACTCTTTCTTTGTAGTTG+TGG	0.466467	tig0039061:-22365	None:intergenic
AAAGAACTATTGGAGAACAA+GGG	0.692289	tig0039061:+23250	Msa1457660:CDS
AATATGTTAGCCAAAAGTGC+AGG	0.609544	tig0039061:+22490	Msa1457660:CDS
AATTGGAAGAAATCCAAAGA+AGG	0.563837	tig0039061:-23575	None:intergenic
ACAACTACAAAGAAAGAGTT+TGG	0.401219	tig0039061:+22367	Msa1457660:CDS
ACATGGGTAATAGTACTTTG+TGG	0.553914	tig0039061:+23813	Msa1457660:CDS
ACATTGTTCTCAAACACATT+TGG	0.382149	tig0039061:-23638	None:intergenic
ACCAATAACTATGGCTTGGA+AGG	0.505112	tig0039061:+23701	Msa1457660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTTCTTTGTAGTTG+TGG	-	tig0039061:22368-22387	None:intergenic	30.0%
ACAACTACAAAGAAAGAGTT+TGG	+	tig0039061:22367-22386	Msa1457660:CDS	30.0%
ATAATTGTTCTTGTGGTGTA+AGG	-	tig0039061:22699-22718	None:intergenic	30.0%
AGGATCAATAATTGTTCTTG+TGG	-	tig0039061:22706-22725	None:intergenic	30.0%
AAATGTATTTGGATTGTCTC+TGG	+	tig0039061:22863-22882	Msa1457660:intron	30.0%
AATGGTTCAGATTTCAAACT+TGG	-	tig0039061:22983-23002	None:intergenic	30.0%
ACAAATTTCACGTATTCACA+TGG	-	tig0039061:23037-23056	None:intergenic	30.0%
TAAAGAACTATTGGAGAACA+AGG	+	tig0039061:23249-23268	Msa1457660:CDS	30.0%
AAAGAACTATTGGAGAACAA+GGG	+	tig0039061:23250-23269	Msa1457660:CDS	30.0%
TACCAGATTCAATGTTAAGT+TGG	-	tig0039061:23292-23311	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0039061	gene	22337	23853	22337	ID=Msa1457660;Name=Msa1457660
tig0039061	mRNA	22337	23853	22337	ID=Msa1457660-mRNA-1;Parent=Msa1457660;Name=Msa1457660-mRNA-1;_AED=0.08;_eAED=0.10;_QI=0\|0\|0\|1\|1\|1\|3\|0\|318
tig0039061	exon	22337	22511	22337	ID=Msa1457660-mRNA-1:exon:21286;Parent=Msa1457660-mRNA-1
tig0039061	exon	22623	22752	22623	ID=Msa1457660-mRNA-1:exon:21287;Parent=Msa1457660-mRNA-1
tig0039061	exon	23202	23853	23202	ID=Msa1457660-mRNA-1:exon:21288;Parent=Msa1457660-mRNA-1
tig0039061	CDS	22337	22511	22337	ID=Msa1457660-mRNA-1:cds;Parent=Msa1457660-mRNA-1
tig0039061	CDS	22623	22752	22623	ID=Msa1457660-mRNA-1:cds;Parent=Msa1457660-mRNA-1
tig0039061	CDS	23202	23853	23202	ID=Msa1457660-mRNA-1:cds;Parent=Msa1457660-mRNA-1

Gene Sequence

>Msa1457660

ATGAACACCACTAGAACATTAGCTATGTCCACAACTACAAAGAAAGAGTTTGGTAATTCTAAAGAAGAAAATGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGATAGCTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACCGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAACCTTACACCACAAGAACAATTATTGATCCTTGAACTTCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATTTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCACGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAACCCTTCTCCAAGCTTTGATCACTCTTCCATGACAAATATGAATAATTTTGGAAACTCTATTGAAGCTTCAACTAGTAATTCAATGTCAACAAGCTTCAATATTCCTTCTATGTCTCCTTCATCCTATCCACAGAGAGGATTCATAGATGCTTCAAGTGCCAATAATTTAAGTACTATGTCAGCCAGCTTCAATAATCCTTCTTTGGATTTCTTCCAATTTTCACAGCCACTTGAAATTTCAGAAAACTCAAAAAGTGCTCCAAATGTGTTTGAGAACAATGTTTATAACGGTCCAATCCAAGACAATTTCTGCATTGATGATACCAATAACTATGGCTTGGAAGGTCTAAACCTTGATCCAATGTCTTCAATGGAAACTTATGACTTTTCACAGTTTGATTTTCAAACTAAAGAAAGTGGTTGGATGTTAGACAACATGGGTAATAGTACTTTGTGGAACATGGATTCTATGTGA

Protein sequence

>Msa1457660

MNTTRTLAMSTTTKKEFGNSKEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNPSPSFDHSSMTNMNNFGNSIEASTSNSMSTSFNIPSMSPSSYPQRGFIDASSANNLSTMSASFNNPSLDFFQFSQPLEISENSKSAPNVFENNVYNGPIQDNFCIDDTNNYGLEGLNLDPMSSMETYDFSQFDFQTKESGWMLDNMGNSTLWNMDSM*