AlfalfaGEDB | Msa1409770

M. sativa cultivar zhongmu-4 / Msa1409770

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409770	XP_003592641.2	93.730	319	11	4	1	318	2	312	0.0	602

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409770	sp\|Q9C9G7\|MYB62_ARATH	64.179	201	58	1	23	223	16	202	1.35e-84	259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409770	A0A396JYW1	93.730	319	11	4	1	318	2	312	0.0	602

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TFs/TRs:

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Gene ID	Type	Classification
Msa1409770	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0138290	Msa1409770	0.938168	1.050844e-98	-8.615850e-47
Msa0533430	Msa1409770	0.803883	2.818721e-49	-8.615850e-47
Msa0639460	Msa1409770	0.818407	1.991770e-52	-8.615850e-47
Msa0815320	Msa1409770	0.830210	3.339420e-55	-8.615850e-47
Msa0818010	Msa1409770	0.810498	1.118746e-50	-8.615850e-47
Msa0853550	Msa1409770	0.806529	7.870722e-50	-8.615850e-47
Msa0884920	Msa1409770	0.823805	1.136829e-53	-8.615850e-47
Msa0902020	Msa1409770	0.828637	8.047427e-55	-8.615850e-47
Msa0963310	Msa1409770	0.802795	4.735884e-49	-8.615850e-47
Msa0965750	Msa1409770	0.808404	3.149447e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409770	MtrunA17_Chr1g0209661	93.730	319	11	4	1	318	2	312	0.0	602
Msa1409770	MtrunA17_Chr1g0194291	67.097	155	47	2	14	166	7	159	4.43e-74	229
Msa1409770	MtrunA17_Chr1g0194301	55.689	167	70	1	26	188	33	199	5.19e-69	216
Msa1409770	MtrunA17_Chr2g0293911	72.857	140	38	0	20	159	18	157	1.60e-67	214
Msa1409770	MtrunA17_Chr4g0068921	69.784	139	42	0	21	159	19	157	3.96e-65	203
Msa1409770	MtrunA17_Chr6g0450101	73.333	120	32	0	15	134	3	122	6.98e-65	203
Msa1409770	MtrunA17_Chr7g0228231	75.630	119	28	1	14	132	3	120	1.23e-64	202
Msa1409770	MtrunA17_Chr1g0168661	69.091	110	34	0	22	131	17	126	3.24e-53	175
Msa1409770	MtrunA17_Chr1g0186061	66.667	108	36	0	22	129	16	123	3.99e-51	169
Msa1409770	MtrunA17_Chr2g0327821	61.468	109	42	0	23	131	3	111	2.78e-47	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409770	AT1G68320.1	64.179	201	58	1	23	223	16	202	1.37e-85	259
Msa1409770	AT1G25340.1	73.856	153	40	0	9	161	1	153	7.65e-82	249
Msa1409770	AT1G25340.2	71.242	153	39	1	9	161	1	148	2.72e-76	235
Msa1409770	AT1G25340.3	71.242	153	39	1	9	161	1	148	6.12e-76	235
Msa1409770	AT1G48000.1	68.310	142	45	0	25	166	31	172	6.11e-71	220
Msa1409770	AT5G49620.1	65.190	158	55	0	15	172	15	172	2.57e-66	211
Msa1409770	AT2G47190.1	60.000	145	58	0	21	165	15	159	8.08e-66	208
Msa1409770	AT5G40350.1	57.303	178	68	4	25	194	16	193	4.96e-65	204
Msa1409770	AT3G27810.1	73.504	117	31	0	23	139	17	133	1.36e-64	203
Msa1409770	AT3G06490.1	68.085	141	45	0	19	159	12	152	7.30e-63	202

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Find 62 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCTCAGCATTTACC+AGG	0.522850	tig0023553:-5675	Msa1409770:CDS
AAACTCTTTCTTTGTAGTTG+TGG	0.466467	tig0023553:+6467	None:intergenic
AAAGAACTATTGGAGAACAA+GGG	0.692289	tig0023553:-5634	Msa1409770:CDS
AATATGTTAGCCAAAAGTGC+AGG	0.609544	tig0023553:-6342	Msa1409770:intron
AATTGGAAGAAATCCAAAGA+AGG	0.563837	tig0023553:+5309	None:intergenic
ACAACTACAAAGAAAGAGTT+TGG	0.401219	tig0023553:-6465	Msa1409770:CDS
ACATGGGTAATAGTACTTTG+TGG	0.553914	tig0023553:-5071	Msa1409770:CDS
ACATTGTTCTCAAACACATT+TGG	0.382149	tig0023553:+5246	None:intergenic
ACCAATAACTATGGCTTGGA+AGG	0.505112	tig0023553:-5183	Msa1409770:CDS
ACCTTCCAAGCCATAGTTAT+TGG	0.185410	tig0023553:+5182	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTTCTTTGTAGTTG+TGG	+	tig0023553:5084-5103	None:intergenic	30.0%
ACAACTACAAAGAAAGAGTT+TGG	-	tig0023553:5083-5102	Msa1409770:CDS	30.0%
ATAATTGTTCTTGTGGTGTA+AGG	+	tig0023553:5412-5431	None:intergenic	30.0%
AGGATCAATAATTGTTCTTG+TGG	+	tig0023553:5419-5438	None:intergenic	30.0%
AAATGTATTTGGATTGTCTC+TGG	-	tig0023553:5528-5547	Msa1409770:CDS	30.0%
AATGGTTCAGATTTCAAACT+TGG	+	tig0023553:5648-5667	None:intergenic	30.0%
ACAAATTTCACGTATTCACA+TGG	+	tig0023553:5701-5720	None:intergenic	30.0%
TAAAGAACTATTGGAGAACA+AGG	-	tig0023553:5913-5932	Msa1409770:intron	30.0%
AAAGAACTATTGGAGAACAA+GGG	-	tig0023553:5914-5933	Msa1409770:intron	30.0%
TACCAGATTCAATGTTAAGT+TGG	+	tig0023553:5956-5975	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023553	gene	5053	6517	5053	ID=Msa1409770;Name=Msa1409770
tig0023553	mRNA	5053	6517	5053	ID=Msa1409770-mRNA-1;Parent=Msa1409770;Name=Msa1409770-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|3\|0\|318
tig0023553	exon	6343	6517	6343	ID=Msa1409770-mRNA-1:exon:26235;Parent=Msa1409770-mRNA-1
tig0023553	exon	6105	6234	6105	ID=Msa1409770-mRNA-1:exon:26234;Parent=Msa1409770-mRNA-1
tig0023553	exon	5053	5704	5053	ID=Msa1409770-mRNA-1:exon:26233;Parent=Msa1409770-mRNA-1
tig0023553	CDS	6343	6517	6343	ID=Msa1409770-mRNA-1:cds;Parent=Msa1409770-mRNA-1
tig0023553	CDS	6105	6234	6105	ID=Msa1409770-mRNA-1:cds;Parent=Msa1409770-mRNA-1
tig0023553	CDS	5053	5704	5053	ID=Msa1409770-mRNA-1:cds;Parent=Msa1409770-mRNA-1

Gene Sequence

>Msa1409770

ATGAACACCACTAGAGAATTAGCTATGTCCACAACTACAAAGAAAGAGTTTGGTAATTCTAAAGAAGAAAATGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGATAGCTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACCGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAACCTTACACCACAAGAACAATTATTGATCCTTGAACTTCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATTTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCACGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAACCCTTCTCCAAGCTTTGATCACTCTTCTATCACAAATATGAATAATTTTGGTAACTCTATTGAAGCTTCAACTAGTAATTCAATGTCAACAAGCTTCAATATTCCTTCTATGTCTCCTTCATCCTATCCACAGAGAGGATTCATAGATGCTTCAAGTGCCAATAATTTAAGTACTATGTCAGCCAGCTTCAATAATCCTTCTTTGGATTTCTTCCAATTTTCACAGCCACTTGAAATTTCAGAAAACTCAAAAAGTGCTCCAAATGTGTTTGAGAACAATGTTTATAACGGTCCAATCCAAGACAATTTCTGCATTGATGATACCAATAACTATGGCTTGGAAGGTCTAAACCTTGATCCAATGTCTTCAATGGAAACTTATGACTTTTCACAGTTTGATTTTCAAACTACAGAAAGTGGTTGGATGTTAGACAACATGGGTAATAGTACTTTGTGGAACATGGATTCTATGTGA

Protein sequence

>Msa1409770

MNTTRELAMSTTTKKEFGNSKEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNPSPSFDHSSITNMNNFGNSIEASTSNSMSTSFNIPSMSPSSYPQRGFIDASSANNLSTMSASFNNPSLDFFQFSQPLEISENSKSAPNVFENNVYNGPIQDNFCIDDTNNYGLEGLNLDPMSSMETYDFSQFDFQTTESGWMLDNMGNSTLWNMDSM*