Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458620 | XP_003591924.2 | 97.936 | 436 | 9 | 0 | 1 | 436 | 1 | 436 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458620 | sp|P57720|AROC_ARATH | 79.439 | 428 | 79 | 3 | 2 | 425 | 3 | 425 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458620 | G7I3B2 | 97.936 | 436 | 9 | 0 | 1 | 436 | 1 | 436 | 0.0 | 885 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069320 | Msa1458620 | 0.801445 | 8.972772e-49 | -8.615850e-47 |
| Msa0690190 | Msa1458620 | 0.811940 | 5.444091e-51 | -8.615850e-47 |
| Msa0131190 | Msa1458620 | 0.927189 | 1.662683e-91 | -8.615850e-47 |
| Msa0177110 | Msa1458620 | 0.823801 | 1.139165e-53 | -8.615850e-47 |
| Msa0307120 | Msa1458620 | 0.872504 | 3.023170e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458620 | MtrunA17_Chr1g0199821 | 97.936 | 436 | 9 | 0 | 1 | 436 | 1 | 436 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458620 | AT1G48850.1 | 79.439 | 428 | 79 | 3 | 2 | 425 | 3 | 425 | 0.0 | 704 |
| Msa1458620 | AT1G48850.3 | 78.729 | 362 | 68 | 3 | 2 | 359 | 3 | 359 | 0.0 | 590 |
| Msa1458620 | AT1G48850.2 | 78.729 | 362 | 68 | 3 | 2 | 359 | 3 | 359 | 0.0 | 590 |
Find 168 sgRNAs with CRISPR-Local
Find 663 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTATCAGTCTCCTTTC+TGG | 0.119746 | tig0039683:+15283 | None:intergenic |
| TAACTTCCTTGTTCGCTTCT+TGG | 0.130786 | tig0039683:+16863 | None:intergenic |
| CACTTCTTCTGTTTCTAATT+TGG | 0.135458 | tig0039683:+8234 | None:intergenic |
| ATCATCTTCTCTGCATATTC+AGG | 0.226636 | tig0039683:+11637 | None:intergenic |
| GCGAGATGTCATTAGCTTAT+AGG | 0.246076 | tig0039683:-14984 | Msa1458620:CDS |
| TTGGACTGCATGTCGTATTC+TGG | 0.254762 | tig0039683:-8080 | Msa1458620:three_prime_UTR |
| TCCTTAAGAGATCCAGTTCT+TGG | 0.259401 | tig0039683:-8099 | Msa1458620:three_prime_UTR |
| GAGGGATCGGAGATTGGAAT+TGG | 0.269061 | tig0039683:+16462 | None:intergenic |
| AAAGCCACGTGGGCAGTAAC+TGG | 0.271931 | tig0039683:-16752 | Msa1458620:five_prime_UTR |
| TACATATGGGAACCACTTTC+GGG | 0.279701 | tig0039683:-15648 | Msa1458620:CDS |
| TTTGGTCATTGGTCCTTTGC+TGG | 0.289999 | tig0039683:+16785 | None:intergenic |
| CAATTTGGTAGTGGGTTTGC+AGG | 0.291322 | tig0039683:-9910 | Msa1458620:intron |
| CACTTTCGGGTTACAACATA+TGG | 0.302913 | tig0039683:-15635 | Msa1458620:CDS |
| ATGGCTATTGCTATTGCTAT+TGG | 0.307089 | tig0039683:+16556 | None:intergenic |
| CATGTATCAGTCTCCTTTCT+GGG | 0.318592 | tig0039683:+15284 | None:intergenic |
| TTCATTATTTCTCAGGGTCT+TGG | 0.321630 | tig0039683:-10006 | Msa1458620:intron |
| TCGCAAAAGTTGAATTGAAT+TGG | 0.335467 | tig0039683:+16650 | None:intergenic |
| GTACATATGGGAACCACTTT+CGG | 0.342196 | tig0039683:-15649 | Msa1458620:CDS |
| TTTCCTCTTTGATCAGTATT+GGG | 0.342486 | tig0039683:+15116 | None:intergenic |
| GCTTCAAGTTTGTCAAATAC+TGG | 0.357310 | tig0039683:+9979 | None:intergenic |
| ATTTCCTCTTTGATCAGTAT+TGG | 0.358775 | tig0039683:+15115 | None:intergenic |
| TCCTTTGCTGGTGTCTGCTT+TGG | 0.362739 | tig0039683:+16797 | None:intergenic |
| TGGCTATTGCTATTGCTATT+GGG | 0.364841 | tig0039683:+16557 | None:intergenic |
| CTCAGATAAAATCTTCATTC+TGG | 0.368408 | tig0039683:-8170 | Msa1458620:three_prime_UTR |
| CCTTTCTGGGAGTTGTAATT+CGG | 0.369236 | tig0039683:+15297 | None:intergenic |
| CGGGCAGCTGGGAGTACATA+TGG | 0.371354 | tig0039683:-15662 | Msa1458620:CDS |
| GTGTTCACTCCCAGTCAAAA+AGG | 0.378540 | tig0039683:+9760 | None:intergenic |
| TCATTCTGGCTAGTGTTTAG+TGG | 0.379236 | tig0039683:-8156 | Msa1458620:three_prime_UTR |
| TGTTTCAATAAATGAAGCTT+TGG | 0.379583 | tig0039683:-7828 | Msa1458620:three_prime_UTR |
| ACCATTGGAAGGGTTGCTTC+TGG | 0.385048 | tig0039683:-14794 | Msa1458620:CDS |
| GAAATAATTAACATGAGAAT+AGG | 0.385678 | tig0039683:-9541 | Msa1458620:CDS |
| CATGTTAATTATTTCTCCAT+TGG | 0.386598 | tig0039683:+9549 | None:intergenic |
| AATGAAATACTCTTTGTTTG+AGG | 0.389567 | tig0039683:+16607 | None:intergenic |
| AATTGAAAACCCTTAGTTGC+GGG | 0.393669 | tig0039683:+9928 | None:intergenic |
| TTCTCTGCATATTCAGGGTC+TGG | 0.396812 | tig0039683:+11643 | None:intergenic |
| TTTACAGAGATTCGGGCAGC+TGG | 0.397683 | tig0039683:-15674 | Msa1458620:intron |
| CTCATGGTCAATTAAGTCTT+CGG | 0.397981 | tig0039683:+12882 | None:intergenic |
| TAAAATACTCTCAGGAGTTT+CGG | 0.400065 | tig0039683:-15261 | Msa1458620:CDS |
| TGTCTGCTTTGGTAAGTTGT+TGG | 0.406083 | tig0039683:+16808 | None:intergenic |
| TGGGTGCATATATCAGTAAT+TGG | 0.408539 | tig0039683:-8194 | Msa1458620:three_prime_UTR |
| AAAGTTGAATTGAATTGGTT+TGG | 0.413974 | tig0039683:+16655 | None:intergenic |
| TATGTCATTGCCCGCAACTA+AGG | 0.414702 | tig0039683:-9938 | Msa1458620:CDS |
| GTGCCTTTCTGAAAATGAAA+TGG | 0.415398 | tig0039683:-8214 | Msa1458620:exon |
| GGAGGAGAGGGATCGGAGAT+TGG | 0.418731 | tig0039683:+16456 | None:intergenic |
| GGTACTTGTGGACCAATTGA+TGG | 0.418936 | tig0039683:-8317 | Msa1458620:CDS |
| GGAAGGAGTGAGGAAGGGTT+TGG | 0.419419 | tig0039683:+16516 | None:intergenic |
| AGGGATCGGAGATTGGAATT+GGG | 0.422790 | tig0039683:+16463 | None:intergenic |
| TCCAAGAACTGGATCTCTTA+AGG | 0.423067 | tig0039683:+8098 | None:intergenic |
| TCATGGTCAATTAAGTCTTC+GGG | 0.427778 | tig0039683:+12883 | None:intergenic |
| CTTTGTTTGAGGTTCGGTAA+TGG | 0.430366 | tig0039683:+16618 | None:intergenic |
| GTATGGTGTCAGATCAGTTC+AGG | 0.431140 | tig0039683:-14929 | Msa1458620:intron |
| AATACTCTTTGTTTGAGGTT+CGG | 0.434743 | tig0039683:+16612 | None:intergenic |
| ATACATATATATATGTTTGC+TGG | 0.443980 | tig0039683:-8054 | Msa1458620:three_prime_UTR |
| AAACCGCTCTGGTGGGATAC+AGG | 0.446252 | tig0039683:-9690 | Msa1458620:intron |
| AGTTGTTGGTGAGTCGAGAA+TGG | 0.450017 | tig0039683:+16822 | None:intergenic |
| GGTAGAGGCCATGGTAGCTT+TGG | 0.452564 | tig0039683:-8338 | Msa1458620:CDS |
| TGACAAACTTGAAGCTGAGT+TGG | 0.456051 | tig0039683:-9971 | Msa1458620:CDS |
| AGGAAGAGAAAGAATCGGTT+CGG | 0.456406 | tig0039683:+16494 | None:intergenic |
| ACGACATGCAGTCCAAGAAC+TGG | 0.457953 | tig0039683:+8087 | None:intergenic |
| GCAACCTATGACATGAAGTA+TGG | 0.467320 | tig0039683:-14946 | Msa1458620:CDS |
| GTGCATGTTGTGCCATCAAT+TGG | 0.469901 | tig0039683:+8305 | None:intergenic |
| AATTGAATTGGTTTGGTTGG+TGG | 0.474469 | tig0039683:+16662 | None:intergenic |
| GTTGTAATTCGGCTTTGACC+TGG | 0.476712 | tig0039683:+15308 | None:intergenic |
| TTGAATTGAATTGGTTTGGT+TGG | 0.479419 | tig0039683:+16659 | None:intergenic |
| CAGTATTGGGCACAAATACA+TGG | 0.482313 | tig0039683:+15129 | None:intergenic |
| TTGGGCACAAATACATGGAT+TGG | 0.483473 | tig0039683:+15134 | None:intergenic |
| GGTAGACGGAGGAGAGGGAT+CGG | 0.486339 | tig0039683:+16449 | None:intergenic |
| CGTGGGCAGTAACTGGGAAA+TGG | 0.488897 | tig0039683:-16745 | Msa1458620:five_prime_UTR |
| TGTTTCTAATTTGGCTGACA+AGG | 0.491775 | tig0039683:+8243 | None:intergenic |
| GGAAGAGAAAGAATCGGTTC+GGG | 0.494003 | tig0039683:+16495 | None:intergenic |
| GGTGTTGGATGTGTCATTGA+TGG | 0.495772 | tig0039683:-15596 | Msa1458620:CDS |
| CCGAATTACAACTCCCAGAA+AGG | 0.500551 | tig0039683:-15297 | Msa1458620:CDS |
| ATTGGAATTGGGAGAAAGGA+AGG | 0.503710 | tig0039683:+16474 | None:intergenic |
| AGGAGTGAGGAAGGGTTTGG+TGG | 0.507069 | tig0039683:+16519 | None:intergenic |
| GTGAGTCGAGAATGGGAAGA+TGG | 0.507831 | tig0039683:+16830 | None:intergenic |
| GTTGTTGGTGAGTCGAGAAT+GGG | 0.508037 | tig0039683:+16823 | None:intergenic |
| ATTGGTTTGGTTGGTGGCAA+TGG | 0.512396 | tig0039683:+16668 | None:intergenic |
| GAATCTCATGGAGGAGGTGT+TGG | 0.513832 | tig0039683:-15611 | Msa1458620:CDS |
| TGAGACACTGACACTTGATC+AGG | 0.515093 | tig0039683:-12863 | Msa1458620:intron |
| AACTCCTATATTTAGGGTGG+TGG | 0.515942 | tig0039683:-14836 | Msa1458620:intron |
| GGAGATTGGAATTGGGAGAA+AGG | 0.519246 | tig0039683:+16470 | None:intergenic |
| GGGCAGCTGGGAGTACATAT+GGG | 0.522096 | tig0039683:-15661 | Msa1458620:CDS |
| CATGGTAGCTTTGGTACTTG+TGG | 0.522487 | tig0039683:-8329 | Msa1458620:CDS |
| TCATCTTCTCTGCATATTCA+GGG | 0.523950 | tig0039683:+11638 | None:intergenic |
| GGCTGAGATACCAACCTCTC+GGG | 0.524544 | tig0039683:+8730 | None:intergenic |
| ACGGAGGTAGACGGAGGAGA+GGG | 0.527565 | tig0039683:+16444 | None:intergenic |
| TTCTTGTAAATCAAAGTTCG+CGG | 0.527748 | tig0039683:+8267 | None:intergenic |
| AAGGAAGGAAGAGAAAGAAT+CGG | 0.529630 | tig0039683:+16489 | None:intergenic |
| TGCCTTTCTGAAAATGAAAT+GGG | 0.530857 | tig0039683:-8213 | Msa1458620:exon |
| GACGGAGGTAGACGGAGGAG+AGG | 0.531416 | tig0039683:+16443 | None:intergenic |
| TTAATTGCAGGAGTTACTAC+AGG | 0.532875 | tig0039683:-15161 | Msa1458620:intron |
| GATACATGTAAAATACTCTC+AGG | 0.533691 | tig0039683:-15269 | Msa1458620:CDS |
| GTTCTTGTGTATAGGAGGCC+AGG | 0.534576 | tig0039683:-15326 | Msa1458620:intron |
| TGTCATAGGTTGCATCCGCA+TGG | 0.536508 | tig0039683:+14956 | None:intergenic |
| GACACCATACTTCATGTCAT+AGG | 0.537696 | tig0039683:+14942 | None:intergenic |
| TCTTGTAAATCAAAGTTCGC+GGG | 0.540183 | tig0039683:+8268 | None:intergenic |
| ATGTCATTGCCCGCAACTAA+GGG | 0.549586 | tig0039683:-9937 | Msa1458620:CDS |
| TCTTCTGCTAGGGAAACCAT+TGG | 0.551202 | tig0039683:-14809 | Msa1458620:CDS |
| GGTTCGGGAAGGAGTGAGGA+AGG | 0.551542 | tig0039683:+16510 | None:intergenic |
| AATCAGGGTGGAATTTCCAA+TGG | 0.556969 | tig0039683:-9565 | Msa1458620:intron |
| AAGCCACGTGGGCAGTAACT+GGG | 0.560152 | tig0039683:-16751 | Msa1458620:five_prime_UTR |
| GTGGTGGTAGATCTTCTGCT+AGG | 0.562776 | tig0039683:-14820 | Msa1458620:CDS |
| GAAACGAGGACGGAGGTAGA+CGG | 0.563398 | tig0039683:+16435 | None:intergenic |
| CCTGTGCACTTGAGAGACAT+AGG | 0.564384 | tig0039683:+12915 | None:intergenic |
| TGCAGCTGTACCCATGGTAG+AGG | 0.565756 | tig0039683:-8353 | Msa1458620:intron |
| CTCTGAAGCTGATATGCAAG+AGG | 0.568295 | tig0039683:-15552 | Msa1458620:CDS |
| AGCTACCATGGCCTCTACCA+TGG | 0.568585 | tig0039683:+8342 | None:intergenic |
| ACCAGAAGCAACCCTTCCAA+TGG | 0.569596 | tig0039683:+14793 | None:intergenic |
| CCTATGTCTCTCAAGTGCAC+AGG | 0.572163 | tig0039683:-12915 | Msa1458620:CDS |
| CAACCTCTCGGGACAACACA+GGG | 0.572864 | tig0039683:+8741 | None:intergenic |
| CATATGTTGTAACCCGAAAG+TGG | 0.573615 | tig0039683:+15636 | None:intergenic |
| ACAAGAACAAACCGCTCTGG+TGG | 0.573699 | tig0039683:-9698 | Msa1458620:CDS |
| ACAGGGATCATGACGACCAC+GGG | 0.574091 | tig0039683:+8758 | None:intergenic |
| TGCTAGGGAAACCATTGGAA+GGG | 0.574957 | tig0039683:-14804 | Msa1458620:CDS |
| TGTACCCATGGTAGAGGCCA+TGG | 0.577435 | tig0039683:-8347 | Msa1458620:CDS |
| GTCATAGGTTGCATCCGCAT+GGG | 0.577755 | tig0039683:+14957 | None:intergenic |
| CTGCTAGGGAAACCATTGGA+AGG | 0.577836 | tig0039683:-14805 | Msa1458620:CDS |
| GTGAAAGGTGATTCTGTTGG+TGG | 0.578147 | tig0039683:-11592 | Msa1458620:CDS |
| GTGAATCCAAGAAGCGAACA+AGG | 0.578442 | tig0039683:-16869 | Msa1458620:five_prime_UTR |
| CAACAGAATCACCTTTCACT+CGG | 0.578783 | tig0039683:+11596 | None:intergenic |
| AGGACAAGAACAAACCGCTC+TGG | 0.581332 | tig0039683:-9701 | Msa1458620:CDS |
| TGGTGGTAGATCTTCTGCTA+GGG | 0.582067 | tig0039683:-14819 | Msa1458620:CDS |
| ACAACATATGGAGAATCTCA+TGG | 0.584104 | tig0039683:-15623 | Msa1458620:CDS |
| TTATATAGATCAAAATGGAA+AGG | 0.585581 | tig0039683:-9726 | Msa1458620:CDS |
| GATCAAGTGTCAGTGTCTCA+TGG | 0.586576 | tig0039683:+12866 | None:intergenic |
| ATTGATGCTGTCCGAGTGAA+AGG | 0.587265 | tig0039683:-11607 | Msa1458620:CDS |
| GCTACCATGGCCTCTACCAT+GGG | 0.587349 | tig0039683:+8343 | None:intergenic |
| TGCATATCAGCTTCAGAGAG+AGG | 0.589694 | tig0039683:+15557 | None:intergenic |
| TTACAGAGATTCGGGCAGCT+GGG | 0.592616 | tig0039683:-15673 | Msa1458620:intron |
| GCTTCAGAGAGAGGGAGGCG+AGG | 0.596196 | tig0039683:+15566 | None:intergenic |
| GCATATCAGCTTCAGAGAGA+GGG | 0.596658 | tig0039683:+15558 | None:intergenic |
| GAAGCAATCTACAGTGACTC+GGG | 0.598566 | tig0039683:-8805 | Msa1458620:CDS |
| AGTAACTGGGAAATGGTGGT+AGG | 0.600229 | tig0039683:-16738 | Msa1458620:five_prime_UTR |
| GTGCCCAATACTGATCAAAG+AGG | 0.603337 | tig0039683:-15119 | Msa1458620:CDS |
| CACAAGTACCAAAGCTACCA+TGG | 0.605561 | tig0039683:+8330 | None:intergenic |
| CACAGGGATCATGACGACCA+CGG | 0.605920 | tig0039683:+8757 | None:intergenic |
| TGAACTTGCAGCTGTACCCA+TGG | 0.607274 | tig0039683:-8359 | Msa1458620:intron |
| TATGGAGAATCTCATGGAGG+AGG | 0.607485 | tig0039683:-15617 | Msa1458620:CDS |
| TAGGTTGCATCCGCATGGGA+AGG | 0.607769 | tig0039683:+14961 | None:intergenic |
| ATACTCTCAGGAGTTTCGGA+AGG | 0.610665 | tig0039683:-15257 | Msa1458620:intron |
| AGAAGCAATCTACAGTGACT+CGG | 0.610730 | tig0039683:-8806 | Msa1458620:CDS |
| CCAACCTCTCGGGACAACAC+AGG | 0.611393 | tig0039683:+8740 | None:intergenic |
| AGCTTATAGGCCTTCCCATG+CGG | 0.616697 | tig0039683:-14971 | Msa1458620:CDS |
| AATCGGTTCGGGAAGGAGTG+AGG | 0.619223 | tig0039683:+16506 | None:intergenic |
| GGTGGAGATCGAAGAAGCCA+TGG | 0.622096 | tig0039683:+16537 | None:intergenic |
| GCGTAATTCTAGCATAGTAG+TGG | 0.622148 | tig0039683:+16697 | None:intergenic |
| GTTCGGGAAGGAGTGAGGAA+GGG | 0.624145 | tig0039683:+16511 | None:intergenic |
| AAATTGAAAACCCTTAGTTG+CGG | 0.624146 | tig0039683:+9927 | None:intergenic |
| TCAGAGAGAGGGAGGCGAGG+AGG | 0.627324 | tig0039683:+15569 | None:intergenic |
| GAGAAAGAATCGGTTCGGGA+AGG | 0.628737 | tig0039683:+16499 | None:intergenic |
| TGCAAGAGGATCTTGACAGA+AGG | 0.632234 | tig0039683:-15538 | Msa1458620:intron |
| CAAGAACAAACCGCTCTGGT+GGG | 0.632701 | tig0039683:-9697 | Msa1458620:CDS |
| ACCAAAGCAGACACCAGCAA+AGG | 0.639168 | tig0039683:-16798 | Msa1458620:five_prime_UTR |
| TGTTTGAGGTTCGGTAATGG+TGG | 0.641901 | tig0039683:+16621 | None:intergenic |
| GGGCAGTAACTGGGAAATGG+TGG | 0.642610 | tig0039683:-16742 | Msa1458620:five_prime_UTR |
| CTTACTGTAATAGTCGATGT+CGG | 0.643905 | tig0039683:+9511 | None:intergenic |
| TATCAGCTTCAGAGAGAGGG+AGG | 0.644707 | tig0039683:+15561 | None:intergenic |
| TAGATCAAAATGGAAAGGTG+AGG | 0.648351 | tig0039683:-9721 | Msa1458620:CDS |
| AAAGGACCAATGACCAAACA+AGG | 0.652812 | tig0039683:-16780 | Msa1458620:five_prime_UTR |
| AATAGCAATAGCAATAGCCA+TGG | 0.652972 | tig0039683:-16554 | Msa1458620:exon |
| TTTCCCAGTTACTGCCCACG+TGG | 0.653902 | tig0039683:+16748 | None:intergenic |
| CGAGTGAAAGGTGATTCTGT+TGG | 0.682023 | tig0039683:-11595 | Msa1458620:CDS |
| GAAACAGAGCTCATAGCCCG+TGG | 0.694287 | tig0039683:-8774 | Msa1458620:CDS |
| ACGAGGACGGAGGTAGACGG+AGG | 0.699102 | tig0039683:+16438 | None:intergenic |
| GTGTTGTAACATGCATTGTG+AGG | 0.723456 | tig0039683:-11570 | Msa1458620:CDS |
| GATCCCTGTGTTGTCCCGAG+AGG | 0.731256 | tig0039683:-8744 | Msa1458620:intron |
| ACATATGGAGAATCTCATGG+AGG | 0.763629 | tig0039683:-15620 | Msa1458620:CDS |
| ATACCTGTATCCCACCAGAG+CGG | 0.816288 | tig0039683:+9687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAATTAATATAA+AGG | - | tig0039683:16696-16715 | Msa1458620:five_prime_UTR | 0.0% |
| !!! | AATTGTTGTTATTATTTTTA+TGG | - | tig0039683:8354-8373 | Msa1458620:intron | 10.0% |
| !!! | TTTTATACATTTTATCTTAA+AGG | + | tig0039683:12575-12594 | None:intergenic | 10.0% |
| !!! | TTTAAGATAAAATGTATAAA+AGG | - | tig0039683:12574-12593 | Msa1458620:intron | 10.0% |
| !!! | TAATACAATTTTACTAAAAA+AGG | + | tig0039683:12937-12956 | None:intergenic | 10.0% |
| !!! | TAATTTGTTAATTTGTTAAT+TGG | - | tig0039683:13816-13835 | Msa1458620:intron | 10.0% |
| !!! | AATTTGTTAATTTGTTAATT+GGG | - | tig0039683:13817-13836 | Msa1458620:intron | 10.0% |
| !! | AAAAATACTAATAAAATTCA+AGG | + | tig0039683:13916-13935 | None:intergenic | 10.0% |
| !! | ATATTTACTAAATTAATTTC+TGG | + | tig0039683:14263-14282 | None:intergenic | 10.0% |
| !! | TATTTAAATATCAAATAACA+GGG | + | tig0039683:14482-14501 | None:intergenic | 10.0% |
| !! | TTATTTAAATATCAAATAAC+AGG | + | tig0039683:14483-14502 | None:intergenic | 10.0% |
| !!! | TATTGTTTATATTTAAAATC+AGG | - | tig0039683:15133-15152 | Msa1458620:CDS | 10.0% |
| !!! | ATTGTTTATATTTAAAATCA+GGG | - | tig0039683:15134-15153 | Msa1458620:CDS | 10.0% |
| !! | TATACATTAATTAATATAGA+GGG | + | tig0039683:15465-15484 | None:intergenic | 10.0% |
| !! | AACATAAAACTTTAAATAAT+GGG | + | tig0039683:16041-16060 | None:intergenic | 10.0% |
| !!! | AAAATTTCGTAATTTTTTAT+TGG | - | tig0039683:16330-16349 | Msa1458620:intron | 10.0% |
| !! | GAATTTCAACATTATTAAAT+TGG | - | tig0039683:8636-8655 | Msa1458620:intron | 15.0% |
| !! | TGAGAATTGAAAAAAATATA+TGG | - | tig0039683:8819-8838 | Msa1458620:intron | 15.0% |
| !! | AAAGAAATTTAACATTAGTA+TGG | + | tig0039683:10015-10034 | None:intergenic | 15.0% |
| !!! | TTTCTTTAATGTTTTTTAAC+AGG | - | tig0039683:10028-10047 | Msa1458620:intron | 15.0% |
| !! | TGATTAAAACGAATATTATA+GGG | + | tig0039683:10542-10561 | None:intergenic | 15.0% |
| !! | ATGATTAAAACGAATATTAT+AGG | + | tig0039683:10543-10562 | None:intergenic | 15.0% |
| !! | ATTTGATATAACAATTTGTA+TGG | - | tig0039683:12443-12462 | Msa1458620:intron | 15.0% |
| !! | TGTATAAATAAATATCTCAA+AGG | - | tig0039683:12484-12503 | Msa1458620:intron | 15.0% |
| !! | GTATAAATAAATATCTCAAA+GGG | - | tig0039683:12485-12504 | Msa1458620:intron | 15.0% |
| !! | TATAAATAAATATCTCAAAG+GGG | - | tig0039683:12486-12505 | Msa1458620:intron | 15.0% |
| !!! | CTCTTTTTGTATTTATTTAT+TGG | - | tig0039683:12728-12747 | Msa1458620:intron | 15.0% |
| !! | TAAAATAAGTAGTATGAATT+AGG | + | tig0039683:12816-12835 | None:intergenic | 15.0% |
| !! | TATAAAGTTACAAATCAATA+GGG | + | tig0039683:14552-14571 | None:intergenic | 15.0% |
| !! | ATATAAAGTTACAAATCAAT+AGG | + | tig0039683:14553-14572 | None:intergenic | 15.0% |
| !!! | GAATTTTATATAGATCAAAA+TGG | - | tig0039683:14983-15002 | Msa1458620:CDS | 15.0% |
| !! | ATACATTAATTAATATAGAG+GGG | + | tig0039683:15464-15483 | None:intergenic | 15.0% |
| !! | GTATACATTAATTAATATAG+AGG | + | tig0039683:15466-15485 | None:intergenic | 15.0% |
| !! | CAACATAAAACTTTAAATAA+TGG | + | tig0039683:16042-16061 | None:intergenic | 15.0% |
| !! | GTTGAAATTTAATAGAAAAT+CGG | + | tig0039683:16274-16293 | None:intergenic | 15.0% |
| !! | AAGAGAAAAAAAAAATAACA+TGG | + | tig0039683:16729-16748 | None:intergenic | 15.0% |
| !!! | ATGTATTTTTTATAGTGAAT+TGG | - | tig0039683:16804-16823 | Msa1458620:five_prime_UTR | 15.0% |
| !! | ATAACAACAATTCAAACAAA+CGG | + | tig0039683:8346-8365 | None:intergenic | 20.0% |
| !! | ACAACATTAAGATTGAAAAA+TGG | + | tig0039683:8448-8467 | None:intergenic | 20.0% |
| !! | TTTCAACATTATTAAATTGG+CGG | - | tig0039683:8639-8658 | Msa1458620:intron | 20.0% |
| !!! | ATTTTATTGAAATGCTAGTA+AGG | - | tig0039683:9286-9305 | Msa1458620:intron | 20.0% |
| !!! | TTTTATTGAAATGCTAGTAA+GGG | - | tig0039683:9287-9306 | Msa1458620:intron | 20.0% |
| !!! | CTTTAAAGAATAACATTGTA+AGG | - | tig0039683:9366-9385 | Msa1458620:intron | 20.0% |
| !! | TCGTATAATTTATTAATTGC+AGG | - | tig0039683:9541-9560 | Msa1458620:CDS | 20.0% |
| !! | TGTTCAGAAATATTCAATAA+AGG | - | tig0039683:9637-9656 | Msa1458620:intron | 20.0% |
| !!! | CTAATAAAATGTTGTACTTT+TGG | - | tig0039683:9688-9707 | Msa1458620:intron | 20.0% |
| !! | AAAATCCTTAAAAAATTTGC+AGG | - | tig0039683:9956-9975 | Msa1458620:CDS | 20.0% |
| !! | CTGTATTGTTCTTTAATTAA+TGG | + | tig0039683:10131-10150 | None:intergenic | 20.0% |
| !!! | ACTTCTTCTTTCTTATTTAT+GGG | - | tig0039683:10215-10234 | Msa1458620:intron | 20.0% |
| !! | CAAGATACATATGAAAAATT+AGG | - | tig0039683:10436-10455 | Msa1458620:intron | 20.0% |
| !!! | ATATACTGGTTATTTTGTTT+TGG | - | tig0039683:10488-10507 | Msa1458620:intron | 20.0% |
| !!! | TATAGGAGATTATATTTTCT+GGG | + | tig0039683:10985-11004 | None:intergenic | 20.0% |
| !!! | AATGCAAACAGTTTTATAAA+AGG | + | tig0039683:11917-11936 | None:intergenic | 20.0% |
| !!! | AATACTTTTTTATGGACATT+TGG | - | tig0039683:11996-12015 | Msa1458620:intron | 20.0% |
| !! | ACTGAGTTTAAATTTAACAA+AGG | + | tig0039683:12187-12206 | None:intergenic | 20.0% |
| !! | TGACAACATTATTAAGAAAA+TGG | - | tig0039683:12361-12380 | Msa1458620:intron | 20.0% |
| !! | GACAACATTATTAAGAAAAT+GGG | - | tig0039683:12362-12381 | Msa1458620:intron | 20.0% |
| !! | AATCATTAGATACAGTTATT+TGG | + | tig0039683:12684-12703 | None:intergenic | 20.0% |
| !!! | TATCTAATGATTACTTTTCA+TGG | - | tig0039683:12692-12711 | Msa1458620:intron | 20.0% |
| !! | AAATAAATACAAAAAGAGCA+AGG | + | tig0039683:12726-12745 | None:intergenic | 20.0% |
| !! | AAATAATTCTGCAAGAAAAT+AGG | - | tig0039683:13208-13227 | Msa1458620:intron | 20.0% |
| !! | AATAATTCTGCAAGAAAATA+GGG | - | tig0039683:13209-13228 | Msa1458620:intron | 20.0% |
| !!! | TTAAAATGGTTTTAAGTGAA+GGG | + | tig0039683:13588-13607 | None:intergenic | 20.0% |
| !!! | TTCACTTAAAACCATTTTAA+GGG | - | tig0039683:13588-13607 | Msa1458620:intron | 20.0% |
| !!! | TGTGACTTTTATTTCAAATT+AGG | - | tig0039683:13967-13986 | Msa1458620:intron | 20.0% |
| !!! | TGAATTTTGAGTAATGTTTA+AGG | - | tig0039683:13999-14018 | Msa1458620:intron | 20.0% |
| !! | TGCAAATTTAATACTTGTAT+CGG | + | tig0039683:14425-14444 | None:intergenic | 20.0% |
| !! | CTAAAAAAATTACATTGATC+AGG | + | tig0039683:14884-14903 | None:intergenic | 20.0% |
| !! | TAGCTTAATGAAATCTTTAT+AGG | - | tig0039683:14929-14948 | Msa1458620:intron | 20.0% |
| !! | TTATATAGATCAAAATGGAA+AGG | - | tig0039683:14988-15007 | Msa1458620:CDS | 20.0% |
| !!! | TAGAAACAACTAATTTGTTA+TGG | + | tig0039683:15063-15082 | None:intergenic | 20.0% |
| !! | GAAATAATTAACATGAGAAT+AGG | - | tig0039683:15173-15192 | Msa1458620:intron | 20.0% |
| !! | ACATTAGATTTATGTCTTTA+TGG | + | tig0039683:16226-16245 | None:intergenic | 20.0% |
| !! | AAAGACATAAATCTAATGTT+AGG | - | tig0039683:16227-16246 | Msa1458620:intron | 20.0% |
| !! | ATACATATATATATGTTTGC+TGG | - | tig0039683:16660-16679 | Msa1458620:five_prime_UTR | 20.0% |
| ! | AAAGTTGAATTGAATTGGTT+TGG | + | tig0039683:8062-8081 | None:intergenic | 25.0% |
| !! | AATGAAATACTCTTTGTTTG+AGG | + | tig0039683:8110-8129 | None:intergenic | 25.0% |
| ! | AAAGTAGCAGAAAATAAAGA+AGG | + | tig0039683:8496-8515 | None:intergenic | 25.0% |
| ! | TTGAAGTTGAAAATAAAGCT+GGG | + | tig0039683:8866-8885 | None:intergenic | 25.0% |
| !! | TTTGAAGTTGAAAATAAAGC+TGG | + | tig0039683:8867-8886 | None:intergenic | 25.0% |
| ! | ACTTCAAATTCCAATTAGTT+TGG | - | tig0039683:8879-8898 | Msa1458620:intron | 25.0% |
| !! | TGATGTATTTTACAGAGATT+CGG | - | tig0039683:9032-9051 | Msa1458620:intron | 25.0% |
| ! | TTACAATAGTTATGAGAAGA+CGG | + | tig0039683:9225-9244 | None:intergenic | 25.0% |
| ! | TAGAGGAATAATGTATAAGA+TGG | - | tig0039683:9263-9282 | Msa1458620:intron | 25.0% |
| ! | TCTTTACAGTGTAATAAGTT+AGG | - | tig0039683:9814-9833 | Msa1458620:intron | 25.0% |
| ! | TTAACCTTTCAATAGAAACT+TGG | - | tig0039683:10091-10110 | Msa1458620:intron | 25.0% |
| ! | AATACCAAGTTTCTATTGAA+AGG | + | tig0039683:10098-10117 | None:intergenic | 25.0% |
| ! | TTTCAATAGAAACTTGGTAT+TGG | - | tig0039683:10097-10116 | Msa1458620:intron | 25.0% |
| ! | TTCAATAGAAACTTGGTATT+GGG | - | tig0039683:10098-10117 | Msa1458620:intron | 25.0% |
| !! | CACTTCTTCTTTCTTATTTA+TGG | - | tig0039683:10214-10233 | Msa1458620:intron | 25.0% |
| !!! | CAATGTGAATGATTTGTTTT+AGG | + | tig0039683:10342-10361 | None:intergenic | 25.0% |
| !! | TCATCGTGTTTTCAATATTA+GGG | + | tig0039683:10415-10434 | None:intergenic | 25.0% |
| !! | TTCATCGTGTTTTCAATATT+AGG | + | tig0039683:10416-10435 | None:intergenic | 25.0% |
| ! | TAACCAGTATATTATAGACA+GGG | + | tig0039683:10480-10499 | None:intergenic | 25.0% |
| ! | ATAACCAGTATATTATAGAC+AGG | + | tig0039683:10481-10500 | None:intergenic | 25.0% |
| ! | ATTTCAGCTATAATGATCAA+AGG | + | tig0039683:10858-10877 | None:intergenic | 25.0% |
| ! | TGAAATGATATAGAGTGAAA+TGG | - | tig0039683:10872-10891 | Msa1458620:intron | 25.0% |
| !! | GTATAGGAGATTATATTTTC+TGG | + | tig0039683:10986-11005 | None:intergenic | 25.0% |
| ! | TGGCTTATTAGATAAAGAAT+TGG | - | tig0039683:11199-11218 | Msa1458620:intron | 25.0% |
| !!! | CTAATAACTCTAAAACCTTT+TGG | + | tig0039683:11388-11407 | None:intergenic | 25.0% |
| ! | AAACACGTTAAACAGTTAAA+AGG | + | tig0039683:11722-11741 | None:intergenic | 25.0% |
| !!! | AATGATATTTCTGGATGAAT+TGG | + | tig0039683:11751-11770 | None:intergenic | 25.0% |
| ! | AATTCATCCAGAAATATCAT+TGG | - | tig0039683:11750-11769 | Msa1458620:intron | 25.0% |
| !!! | GTCAAGTAGTATTTTAAACA+TGG | - | tig0039683:11949-11968 | Msa1458620:intron | 25.0% |
| !!! | CTACTTTTAATTCCATTTCA+TGG | - | tig0039683:12073-12092 | Msa1458620:intron | 25.0% |
| ! | CAAAATCATTAGTTGTAACA+TGG | + | tig0039683:12121-12140 | None:intergenic | 25.0% |
| !! | GTTACAACTAATGATTTTGT+CGG | - | tig0039683:12122-12141 | Msa1458620:intron | 25.0% |
| !!! | TGATGATGAATGTATTGATT+TGG | - | tig0039683:12534-12553 | Msa1458620:intron | 25.0% |
| !!! | ATGTATTGATTTGGTAGTAA+AGG | - | tig0039683:12543-12562 | Msa1458620:intron | 25.0% |
| !!! | TGTATTGATTTGGTAGTAAA+GGG | - | tig0039683:12544-12563 | Msa1458620:intron | 25.0% |
| !!! | ATTATTTTTACTTGTCAGAG+AGG | + | tig0039683:13195-13214 | None:intergenic | 25.0% |
| !! | TTTTATCGGGAAACTATATT+TGG | - | tig0039683:13277-13296 | Msa1458620:intron | 25.0% |
| !!! | CTTAAAATGGTTTTAAGTGA+AGG | + | tig0039683:13589-13608 | None:intergenic | 25.0% |
| !! | CTTCACTTAAAACCATTTTA+AGG | - | tig0039683:13587-13606 | Msa1458620:intron | 25.0% |
| ! | TACAAAAATGACCCTTAAAA+TGG | + | tig0039683:13602-13621 | None:intergenic | 25.0% |
| !!! | TTGTTAATTTGTTAATTGGG+AGG | - | tig0039683:13820-13839 | Msa1458620:intron | 25.0% |
| !!! | TTTGTTACTTTAAGCTTTAG+AGG | - | tig0039683:13874-13893 | Msa1458620:intron | 25.0% |
| !! | ATACGTGATATAGAATTTTG+TGG | - | tig0039683:14281-14300 | Msa1458620:intron | 25.0% |
| !!! | TTAATTGCCATTGGTTTTTT+TGG | + | tig0039683:14312-14331 | None:intergenic | 25.0% |
| ! | TGAGTTTATTTAATTGCCAT+TGG | + | tig0039683:14321-14340 | None:intergenic | 25.0% |
| !! | TTAATACTTGTATCGGTATA+TGG | + | tig0039683:14418-14437 | None:intergenic | 25.0% |
| ! | AAGAACAATCTAATAGTGAT+AGG | + | tig0039683:14449-14468 | None:intergenic | 25.0% |
| ! | ATAATAGGAATGAGAGAAAA+AGG | - | tig0039683:14499-14518 | Msa1458620:intron | 25.0% |
| !! | CAATACAAACATAAAGTACT+TGG | + | tig0039683:14646-14665 | None:intergenic | 25.0% |
| !! | AAATGACTTCATTATTTCTC+AGG | - | tig0039683:14701-14720 | Msa1458620:intron | 25.0% |
| !! | AATGACTTCATTATTTCTCA+GGG | - | tig0039683:14702-14721 | Msa1458620:intron | 25.0% |
| !! | GTTTATATTTAAAATCAGGG+TGG | - | tig0039683:15137-15156 | Msa1458620:CDS | 25.0% |
| !! | CATGTTAATTATTTCTCCAT+TGG | + | tig0039683:15168-15187 | None:intergenic | 25.0% |
| ! | TAAGTGTTAAAAGTTGTGTA+TGG | - | tig0039683:15383-15402 | Msa1458620:intron | 25.0% |
| ! | AAGTGTTAAAAGTTGTGTAT+GGG | - | tig0039683:15384-15403 | Msa1458620:intron | 25.0% |
| ! | ATTAATATAGAGGGGATATA+AGG | + | tig0039683:15456-15475 | None:intergenic | 25.0% |
| ! | TCTCATTCAAATAGAGAAAA+TGG | + | tig0039683:15601-15620 | None:intergenic | 25.0% |
| !! | CAATGACTTTTAGATGATTT+AGG | - | tig0039683:15814-15833 | Msa1458620:intron | 25.0% |
| ! | TAATGGGATGAAAATAAGAT+AGG | + | tig0039683:16025-16044 | None:intergenic | 25.0% |
| !! | GCAACAAATTTTGTAGTTTT+TGG | - | tig0039683:16835-16854 | Msa1458620:five_prime_UTR | 25.0% |
| ! | TGTTTCAATAAATGAAGCTT+TGG | - | tig0039683:16886-16905 | Msa1458620:five_prime_UTR | 25.0% |
| !! | TTTTATCCTTGTTTGGTCAT+TGG | + | tig0039683:7943-7962 | None:intergenic | 30.0% |
| !! | TTGAATTGAATTGGTTTGGT+TGG | + | tig0039683:8058-8077 | None:intergenic | 30.0% |
| TCGCAAAAGTTGAATTGAAT+TGG | + | tig0039683:8067-8086 | None:intergenic | 30.0% | |
| ! | AATACTCTTTGTTTGAGGTT+CGG | + | tig0039683:8105-8124 | None:intergenic | 30.0% |
| !!! | TACTAACGGAGTTGTTTTTT+GGG | + | tig0039683:8305-8324 | None:intergenic | 30.0% |
| !!! | ATACTAACGGAGTTGTTTTT+TGG | + | tig0039683:8306-8325 | None:intergenic | 30.0% |
| AGTAAAGAGAAAAGAGAAAG+CGG | + | tig0039683:8421-8440 | None:intergenic | 30.0% | |
| ACTTTGGTACAGAAAAATTC+AGG | + | tig0039683:8537-8556 | None:intergenic | 30.0% | |
| ACTGCAATGTCAATATTGTT+AGG | - | tig0039683:8689-8708 | Msa1458620:intron | 30.0% | |
| TAGTCTCAAACCAAACTAAT+TGG | + | tig0039683:8892-8911 | None:intergenic | 30.0% | |
| ! | GATGTATTTTACAGAGATTC+GGG | - | tig0039683:9033-9052 | Msa1458620:intron | 30.0% |
| AACTATTGTAAAAAGCCCTT+TGG | - | tig0039683:9234-9253 | Msa1458620:intron | 30.0% | |
| CATTATGAATGATAGCTGAT+AGG | - | tig0039683:9317-9336 | Msa1458620:intron | 30.0% | |
| ATTGTAAGGTTCTTGTGTAT+AGG | - | tig0039683:9380-9399 | Msa1458620:intron | 30.0% | |
| GATACATGTAAAATACTCTC+AGG | - | tig0039683:9445-9464 | Msa1458620:intron | 30.0% | |
| TAAAATACTCTCAGGAGTTT+CGG | - | tig0039683:9453-9472 | Msa1458620:intron | 30.0% | |
| TTCTTCTTACTGCTATTAAC+TGG | - | tig0039683:9487-9506 | Msa1458620:intron | 30.0% | |
| TCTTCTTACTGCTATTAACT+GGG | - | tig0039683:9488-9507 | Msa1458620:intron | 30.0% | |
| TTTCCTCTTTGATCAGTATT+GGG | + | tig0039683:9601-9620 | None:intergenic | 30.0% | |
| ATTTCCTCTTTGATCAGTAT+TGG | + | tig0039683:9602-9621 | None:intergenic | 30.0% | |
| TTTATTAGCCACGTAAATCA+AGG | + | tig0039683:9676-9695 | None:intergenic | 30.0% | |
| !!! | GTACTTTTGGATACTTTTTC+AGG | - | tig0039683:9701-9720 | Msa1458620:CDS | 30.0% |
| ACATCTGAACTCCTATATTT+AGG | - | tig0039683:9871-9890 | Msa1458620:intron | 30.0% | |
| CATCTGAACTCCTATATTTA+GGG | - | tig0039683:9872-9891 | Msa1458620:intron | 30.0% | |
| !!! | CAGTTCCTGCAAATTTTTTA+AGG | + | tig0039683:9964-9983 | None:intergenic | 30.0% |
| TAAAAAATTTGCAGGAACTG+AGG | - | tig0039683:9964-9983 | Msa1458620:CDS | 30.0% | |
| CTAACATGATAGATCATTCT+TGG | + | tig0039683:10054-10073 | None:intergenic | 30.0% | |
| CAAGAATGATCTATCATGTT+AGG | - | tig0039683:10052-10071 | Msa1458620:intron | 30.0% | |
| AAGAACAATACAGAACTTCA+AGG | - | tig0039683:10138-10157 | Msa1458620:intron | 30.0% | |
| AGAACAATACAGAACTTCAA+GGG | - | tig0039683:10139-10158 | Msa1458620:intron | 30.0% | |
| TGAGATAGTTGTAAGAAATG+AGG | + | tig0039683:10248-10267 | None:intergenic | 30.0% | |
| ! | AAGTAGTTAGTTGGTTAGTT+GGG | + | tig0039683:10272-10291 | None:intergenic | 30.0% |
| ! | TATGTGTTTGTTAGGACATT+TGG | + | tig0039683:10309-10328 | None:intergenic | 30.0% |
| GGTGATATTATGTGTTTGTT+AGG | + | tig0039683:10317-10336 | None:intergenic | 30.0% | |
| !!! | GTGAATGATTTGTTTTAGGT+GGG | + | tig0039683:10338-10357 | None:intergenic | 30.0% |
| !!! | TGTGAATGATTTGTTTTAGG+TGG | + | tig0039683:10339-10358 | None:intergenic | 30.0% |
| ! | GTTTTCAATATTAGGGAACT+TGG | + | tig0039683:10408-10427 | None:intergenic | 30.0% |
| ! | TTTGGTCCCTATAATTGTTT+TGG | - | tig0039683:10506-10525 | Msa1458620:intron | 30.0% |
| TTTCGGCCAAAACAATTATA+GGG | + | tig0039683:10515-10534 | None:intergenic | 30.0% | |
| ATTTCGGCCAAAACAATTAT+AGG | + | tig0039683:10516-10535 | None:intergenic | 30.0% | |
| !!! | TATAATTGTTTTGGCCGAAA+TGG | - | tig0039683:10515-10534 | Msa1458620:intron | 30.0% |
| GAATATTATAGGGACCATTT+CGG | + | tig0039683:10532-10551 | None:intergenic | 30.0% | |
| ATTGAGCTAGCTATTGTTAT+GGG | + | tig0039683:10689-10708 | None:intergenic | 30.0% | |
| TATTGAGCTAGCTATTGTTA+TGG | + | tig0039683:10690-10709 | None:intergenic | 30.0% | |
| ! | AATAGCTAGCTCAATAGTTT+TGG | - | tig0039683:10694-10713 | Msa1458620:intron | 30.0% |
| ! | GAATTCTTTAGAGACATGAA+TGG | + | tig0039683:10742-10761 | None:intergenic | 30.0% |
| ATAATGATCAAAGGTTCTCT+TGG | + | tig0039683:10849-10868 | None:intergenic | 30.0% | |
| AGAAACATTGCAGATACAAT+AGG | + | tig0039683:11071-11090 | None:intergenic | 30.0% | |
| AAAAGTCCACTATATGAACA+TGG | + | tig0039683:11110-11129 | None:intergenic | 30.0% | |
| !!! | ATGTTCATATAGTGGACTTT+TGG | - | tig0039683:11109-11128 | Msa1458620:intron | 30.0% |
| TGGGATATCAATGTTATCAA+TGG | + | tig0039683:11159-11178 | None:intergenic | 30.0% | |
| AGAACAAAAAAAGGAAAGCT+GGG | + | tig0039683:11241-11260 | None:intergenic | 30.0% | |
| ATAGGAAGGAGAACAAAAAA+AGG | + | tig0039683:11250-11269 | None:intergenic | 30.0% | |
| !!! | AGATCTGGTTTTTGATATGA+TGG | + | tig0039683:11323-11342 | None:intergenic | 30.0% |
| ! | AAAACCAGATCTAGTAGTTT+TGG | - | tig0039683:11331-11350 | Msa1458620:intron | 30.0% |
| ATAACCAAAACTACTAGATC+TGG | + | tig0039683:11338-11357 | None:intergenic | 30.0% | |
| !!! | AGATCTAGTAGTTTTGGTTA+TGG | - | tig0039683:11337-11356 | Msa1458620:intron | 30.0% |
| CATATTACACAAGATCAGTA+TGG | + | tig0039683:11474-11493 | None:intergenic | 30.0% | |
| AACAAAAAATTGAGAGAGAG+GGG | + | tig0039683:11540-11559 | None:intergenic | 30.0% | |
| GAACAAAAAATTGAGAGAGA+GGG | + | tig0039683:11541-11560 | None:intergenic | 30.0% | |
| TGAACAAAAAATTGAGAGAG+AGG | + | tig0039683:11542-11561 | None:intergenic | 30.0% | |
| TAACAGATTAAAGGAGTTCA+AGG | + | tig0039683:11647-11666 | None:intergenic | 30.0% | |
| TTGAAATGCATTCCATGAAA+TGG | + | tig0039683:12088-12107 | None:intergenic | 30.0% | |
| ! | GATTTTGTCGGAAGAAATTT+TGG | - | tig0039683:12134-12153 | Msa1458620:intron | 30.0% |
| GAGTACATTTATTCGAAATG+TGG | + | tig0039683:12226-12245 | None:intergenic | 30.0% | |
| ! | CAAATTTTTACCATTCCAAC+TGG | - | tig0039683:12389-12408 | Msa1458620:intron | 30.0% |
| !! | GTATTGATTTGGTAGTAAAG+GGG | - | tig0039683:12545-12564 | Msa1458620:intron | 30.0% |
| CAGTTATTTGGTCAAAATAC+AGG | + | tig0039683:12672-12691 | None:intergenic | 30.0% | |
| GGACAAATTCCAAAAAGTAA+TGG | + | tig0039683:13025-13044 | None:intergenic | 30.0% | |
| GAACAATATTACTCTCAATC+TGG | + | tig0039683:13046-13065 | None:intergenic | 30.0% | |
| !! | TTTGGCTTTCTGAATTTCAA+CGG | - | tig0039683:13295-13314 | Msa1458620:intron | 30.0% |
| TAAAACTCTGTTGTCAATAG+TGG | - | tig0039683:13411-13430 | Msa1458620:intron | 30.0% | |
| ! | GAAATCCTGTATTTTACACA+GGG | + | tig0039683:13566-13585 | None:intergenic | 30.0% |
| ATGGAGAAGAGTAATAGTTA+GGG | + | tig0039683:13635-13654 | None:intergenic | 30.0% | |
| !!! | GATGAGATGGATTTTTTTGT+TGG | + | tig0039683:13700-13719 | None:intergenic | 30.0% |
| CAAGAGATTAGAACAAAGAT+GGG | + | tig0039683:13752-13771 | None:intergenic | 30.0% | |
| TCAAGAGATTAGAACAAAGA+TGG | + | tig0039683:13753-13772 | None:intergenic | 30.0% | |
| CACTATTAGATTGTTCTTTG+AGG | - | tig0039683:14451-14470 | Msa1458620:intron | 30.0% | |
| !! | TTAGATTGTTCTTTGAGGTA+TGG | - | tig0039683:14456-14475 | Msa1458620:intron | 30.0% |
| CATGCAAGTCGATATATAAA+GGG | + | tig0039683:14578-14597 | None:intergenic | 30.0% | |
| AAATTGAAAACCCTTAGTTG+CGG | + | tig0039683:14790-14809 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTAGCAGTTGTGTC+TGG | - | tig0039683:14894-14913 | Msa1458620:intron | 30.0% |
| !!! | TTTTTTTAGCAGTTGTGTCT+GGG | - | tig0039683:14895-14914 | Msa1458620:intron | 30.0% |
| ! | TTTATAGGTACCTTTTTGAC+TGG | - | tig0039683:14944-14963 | Msa1458620:CDS | 30.0% |
| !! | TTATAGGTACCTTTTTGACT+GGG | - | tig0039683:14945-14964 | Msa1458620:CDS | 30.0% |
| GGTAAACATAAGTGTGAAAA+CGG | + | tig0039683:15519-15538 | None:intergenic | 30.0% | |
| ACCTAAATCAGCTAAAAATG+GGG | + | tig0039683:15778-15797 | None:intergenic | 30.0% | |
| CACCTAAATCAGCTAAAAAT+GGG | + | tig0039683:15779-15798 | None:intergenic | 30.0% | |
| ! | TGACTTTTAGATGATTTAGG+TGG | - | tig0039683:15817-15836 | Msa1458620:intron | 30.0% |
| !! | AAAGTATTTTCCCAGTAGAT+TGG | + | tig0039683:16185-16204 | None:intergenic | 30.0% |
| !! | TTTCTTTTCTAGTGATGAGA+AGG | + | tig0039683:16313-16332 | None:intergenic | 30.0% |
| TTCTTGTAAATCAAAGTTCG+CGG | + | tig0039683:16450-16469 | None:intergenic | 30.0% | |
| !! | CACTTCTTCTGTTTCTAATT+TGG | + | tig0039683:16483-16502 | None:intergenic | 30.0% |
| ! | TGCCTTTCTGAAAATGAAAT+GGG | - | tig0039683:16501-16520 | Msa1458620:CDS | 30.0% |
| ! | CAGAATGAAGATTTTATCTG+AGG | + | tig0039683:16546-16565 | None:intergenic | 30.0% |
| CTCAGATAAAATCTTCATTC+TGG | - | tig0039683:16544-16563 | Msa1458620:exon | 30.0% | |
| !!! | GTGGCTTTTTTATCCTTGTT+TGG | + | tig0039683:7950-7969 | None:intergenic | 35.0% |
| !! | AATTGAATTGGTTTGGTTGG+TGG | + | tig0039683:8055-8074 | None:intergenic | 35.0% |
| ! | TGGCTATTGCTATTGCTATT+GGG | + | tig0039683:8160-8179 | None:intergenic | 35.0% |
| ! | ATGGCTATTGCTATTGCTAT+TGG | + | tig0039683:8161-8180 | None:intergenic | 35.0% |
| AATAGCAATAGCAATAGCCA+TGG | - | tig0039683:8160-8179 | Msa1458620:three_prime_UTR | 35.0% | |
| AAGGAAGGAAGAGAAAGAAT+CGG | + | tig0039683:8228-8247 | None:intergenic | 35.0% | |
| !!! | ACTAACGGAGTTGTTTTTTG+GGG | + | tig0039683:8304-8323 | None:intergenic | 35.0% |
| ! | ACCAAAGTTTTCCAGTTGTA+AGG | - | tig0039683:8549-8568 | Msa1458620:intron | 35.0% |
| TCCTTACAACTGGAAAACTT+TGG | + | tig0039683:8553-8572 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCAGTTGTAAGGA+TGG | - | tig0039683:8553-8572 | Msa1458620:intron | 35.0% |
| ATGAATTCCATCCTTACAAC+TGG | + | tig0039683:8563-8582 | None:intergenic | 35.0% | |
| CAATGTCAATATTGTTAGGC+TGG | - | tig0039683:8693-8712 | Msa1458620:intron | 35.0% | |
| TTAATCACACAAGCTGATGT+AGG | - | tig0039683:8771-8790 | Msa1458620:CDS | 35.0% | |
| TCTTAGGAAGTCTAGACTAA+TGG | - | tig0039683:8968-8987 | Msa1458620:intron | 35.0% | |
| ACTAATGGTACTGTGATTGA+TGG | - | tig0039683:8983-9002 | Msa1458620:intron | 35.0% | |
| ACAACATATGGAGAATCTCA+TGG | - | tig0039683:9091-9110 | Msa1458620:intron | 35.0% | |
| ! | AGACGGTGAGATAATTTTGA+AGG | + | tig0039683:9208-9227 | None:intergenic | 35.0% |
| TATTGTAAAAAGCCCTTTGG+AGG | - | tig0039683:9237-9256 | Msa1458620:intron | 35.0% | |
| TTAATTGCAGGAGTTACTAC+AGG | - | tig0039683:9553-9572 | Msa1458620:CDS | 35.0% | |
| GTGGTCATTAGATAGGAAAT+GGG | + | tig0039683:10190-10209 | None:intergenic | 35.0% | |
| TGTGGTCATTAGATAGGAAA+TGG | + | tig0039683:10191-10210 | None:intergenic | 35.0% | |
| !! | AAGAAAGAAGAAGTGTCATG+TGG | + | tig0039683:10209-10228 | None:intergenic | 35.0% |
| CAAGTAGTTAGTTGGTTAGT+TGG | + | tig0039683:10273-10292 | None:intergenic | 35.0% | |
| GGGTTTATCAAGTAGTTAGT+TGG | + | tig0039683:10281-10300 | None:intergenic | 35.0% | |
| TGTTAGGACATTTGGTAAGA+GGG | + | tig0039683:10301-10320 | None:intergenic | 35.0% | |
| TTGTTAGGACATTTGGTAAG+AGG | + | tig0039683:10302-10321 | None:intergenic | 35.0% | |
| TCACCCTGTCTATAATATAC+TGG | - | tig0039683:10474-10493 | Msa1458620:intron | 35.0% | |
| CTTGGTAAGTGATCATATTC+TGG | + | tig0039683:10831-10850 | None:intergenic | 35.0% | |
| ! | CAACTCTAAGGAAGACAAAA+GGG | + | tig0039683:10955-10974 | None:intergenic | 35.0% |
| TTGACAACATTGTAGGGTAT+AGG | + | tig0039683:11002-11021 | None:intergenic | 35.0% | |
| GCAGATTTGACAACATTGTA+GGG | + | tig0039683:11008-11027 | None:intergenic | 35.0% | |
| TGCAGATTTGACAACATTGT+AGG | + | tig0039683:11009-11028 | None:intergenic | 35.0% | |
| ! | ACTATATGAACATGGTGTTG+CGG | + | tig0039683:11102-11121 | None:intergenic | 35.0% |
| !!! | TCATATAGTGGACTTTTGGT+TGG | - | tig0039683:11113-11132 | Msa1458620:intron | 35.0% |
| TCAATGTTATCAATGGCGAA+TGG | + | tig0039683:11152-11171 | None:intergenic | 35.0% | |
| TTGATATCCCATCACACTAA+TGG | - | tig0039683:11168-11187 | Msa1458620:intron | 35.0% | |
| GCTAAAACCATTAGTGTGAT+GGG | + | tig0039683:11178-11197 | None:intergenic | 35.0% | |
| AGCTAAAACCATTAGTGTGA+TGG | + | tig0039683:11179-11198 | None:intergenic | 35.0% | |
| !!! | TCACACTAATGGTTTTAGCT+TGG | - | tig0039683:11179-11198 | Msa1458620:intron | 35.0% |
| GAGAACAAAAAAAGGAAAGC+TGG | + | tig0039683:11242-11261 | None:intergenic | 35.0% | |
| ! | TGTTGCAGAAAAGCATGAAT+AGG | + | tig0039683:11268-11287 | None:intergenic | 35.0% |
| TTGTTCTAGTACTTGCACAA+AGG | + | tig0039683:11423-11442 | None:intergenic | 35.0% | |
| TTTGTGCAAGTACTAGAACA+AGG | - | tig0039683:11422-11441 | Msa1458620:intron | 35.0% | |
| TTGTGCAAGTACTAGAACAA+GGG | - | tig0039683:11423-11442 | Msa1458620:intron | 35.0% | |
| TACACAAGATCAGTATGGAT+AGG | + | tig0039683:11469-11488 | None:intergenic | 35.0% | |
| TGGTTGAGCTAACAGATTAA+AGG | + | tig0039683:11656-11675 | None:intergenic | 35.0% | |
| GACTTAGCCAATGATATTTC+TGG | + | tig0039683:11760-11779 | None:intergenic | 35.0% | |
| TCATGGTCAATTAAGTCTTC+GGG | + | tig0039683:11834-11853 | None:intergenic | 35.0% | |
| CTCATGGTCAATTAAGTCTT+CGG | + | tig0039683:11835-11854 | None:intergenic | 35.0% | |
| GAAAAAGTTTCAGTTCACAG+AGG | - | tig0039683:12265-12284 | Msa1458620:intron | 35.0% | |
| ACGACTGATGAGTATTACTA+AGG | - | tig0039683:12335-12354 | Msa1458620:intron | 35.0% | |
| ACTAATGCACATTTACCAGT+TGG | + | tig0039683:12407-12426 | None:intergenic | 35.0% | |
| TCATCTTCTCTGCATATTCA+GGG | + | tig0039683:13079-13098 | None:intergenic | 35.0% | |
| ATCATCTTCTCTGCATATTC+AGG | + | tig0039683:13080-13099 | None:intergenic | 35.0% | |
| TAAAAGTGATAACAACCACG+AGG | - | tig0039683:13253-13272 | Msa1458620:intron | 35.0% | |
| AAAAGTGATAACAACCACGA+GGG | - | tig0039683:13254-13273 | Msa1458620:intron | 35.0% | |
| TACAACCCTGTGTAAAATAC+AGG | - | tig0039683:13558-13577 | Msa1458620:intron | 35.0% | |
| ! | GGAAATCCTGTATTTTACAC+AGG | + | tig0039683:13567-13586 | None:intergenic | 35.0% |
| GATGGAGAAGAGTAATAGTT+AGG | + | tig0039683:13636-13655 | None:intergenic | 35.0% | |
| TTAAACCTCTGTTGTCAAAG+CGG | + | tig0039683:14164-14183 | None:intergenic | 35.0% | |
| GGAAACTCCAAAAAAACCAA+TGG | - | tig0039683:14302-14321 | Msa1458620:intron | 35.0% | |
| ! | TATCTAGGATTCCATGAGTT+TGG | - | tig0039683:14361-14380 | Msa1458620:intron | 35.0% |
| AAGGTAAGATTCCAAACTCA+TGG | + | tig0039683:14375-14394 | None:intergenic | 35.0% | |
| TGATACAGCAAAAATCTGGA+AGG | + | tig0039683:14394-14413 | None:intergenic | 35.0% | |
| TGGATGATACAGCAAAAATC+TGG | + | tig0039683:14398-14417 | None:intergenic | 35.0% | |
| GCATGCAAGTCGATATATAA+AGG | + | tig0039683:14579-14598 | None:intergenic | 35.0% | |
| TTGCATGCCTGATATCTTAT+AGG | - | tig0039683:14591-14610 | Msa1458620:intron | 35.0% | |
| GGAAATGCCTATAAGATATC+AGG | + | tig0039683:14601-14620 | None:intergenic | 35.0% | |
| TTGGTTGCAAAACAATGCAA+AGG | + | tig0039683:14627-14646 | None:intergenic | 35.0% | |
| ! | TTCATTATTTCTCAGGGTCT+TGG | - | tig0039683:14708-14727 | Msa1458620:intron | 35.0% |
| ! | GCTTCAAGTTTGTCAAATAC+TGG | + | tig0039683:14738-14757 | None:intergenic | 35.0% |
| AATTGAAAACCCTTAGTTGC+GGG | + | tig0039683:14789-14808 | None:intergenic | 35.0% | |
| ! | GCAACTAAGGGTTTTCAATT+TGG | - | tig0039683:14789-14808 | Msa1458620:CDS | 35.0% |
| ! | AAGGGTTTTCAATTTGGTAG+TGG | - | tig0039683:14795-14814 | Msa1458620:CDS | 35.0% |
| !! | AGGGTTTTCAATTTGGTAGT+GGG | - | tig0039683:14796-14815 | Msa1458620:CDS | 35.0% |
| !!! | TTTTTTAGCAGTTGTGTCTG+GGG | - | tig0039683:14896-14915 | Msa1458620:intron | 35.0% |
| TAGATCAAAATGGAAAGGTG+AGG | - | tig0039683:14993-15012 | Msa1458620:CDS | 35.0% | |
| CTTACTGTAATAGTCGATGT+CGG | + | tig0039683:15206-15225 | None:intergenic | 35.0% | |
| CATATCAAAAACCAATGCCA+GGG | - | tig0039683:15321-15340 | Msa1458620:intron | 35.0% | |
| ATATCAAAAACCAATGCCAG+GGG | - | tig0039683:15322-15341 | Msa1458620:intron | 35.0% | |
| !! | CTACACAGTTGATCTTGTTT+TGG | + | tig0039683:15540-15559 | None:intergenic | 35.0% |
| CAAAACAAGATCAACTGTGT+AGG | - | tig0039683:15538-15557 | Msa1458620:intron | 35.0% | |
| AGCAAGATTACGCAAACAAA+AGG | + | tig0039683:15720-15739 | None:intergenic | 35.0% | |
| CTAAATCAGCTAAAAATGGG+GGG | + | tig0039683:15776-15795 | None:intergenic | 35.0% | |
| CCTAAATCAGCTAAAAATGG+GGG | + | tig0039683:15777-15796 | None:intergenic | 35.0% | |
| CCACCTAAATCAGCTAAAAA+TGG | + | tig0039683:15780-15799 | None:intergenic | 35.0% | |
| !!! | CCATTTTTAGCTGATTTAGG+TGG | - | tig0039683:15777-15796 | Msa1458620:intron | 35.0% |
| ! | CAATGTTAACTCGGTTCTAA+AGG | + | tig0039683:16102-16121 | None:intergenic | 35.0% |
| CTTTCAGGACAATGTTAACT+CGG | + | tig0039683:16111-16130 | None:intergenic | 35.0% | |
| GAGTTAACATTGTCCTGAAA+GGG | - | tig0039683:16110-16129 | Msa1458620:intron | 35.0% | |
| AAACATTATCTCACCCTTTC+AGG | + | tig0039683:16126-16145 | None:intergenic | 35.0% | |
| ! | ATTTTCCCAGTAGATTGGAT+CGG | + | tig0039683:16180-16199 | None:intergenic | 35.0% |
| !! | TTTTCTAGTGATGAGAAGGT+AGG | + | tig0039683:16309-16328 | None:intergenic | 35.0% |
| TCTTGTAAATCAAAGTTCGC+GGG | + | tig0039683:16449-16468 | None:intergenic | 35.0% | |
| ! | TGTTTCTAATTTGGCTGACA+AGG | + | tig0039683:16474-16493 | None:intergenic | 35.0% |
| ! | GTGCCTTTCTGAAAATGAAA+TGG | - | tig0039683:16500-16519 | Msa1458620:CDS | 35.0% |
| ! | CACCCATTTCATTTTCAGAA+AGG | + | tig0039683:16506-16525 | None:intergenic | 35.0% |
| TGGGTGCATATATCAGTAAT+TGG | - | tig0039683:16520-16539 | Msa1458620:CDS | 35.0% | |
| TAACTTCCTTGTTCGCTTCT+TGG | + | tig0039683:7854-7873 | None:intergenic | 40.0% | |
| TGTCTGCTTTGGTAAGTTGT+TGG | + | tig0039683:7909-7928 | None:intergenic | 40.0% | |
| AAAGGACCAATGACCAAACA+AGG | - | tig0039683:7934-7953 | Msa1458620:three_prime_UTR | 40.0% | |
| ACAAGGATAAAAAAGCCACG+TGG | - | tig0039683:7951-7970 | Msa1458620:three_prime_UTR | 40.0% | |
| CAAGGATAAAAAAGCCACGT+GGG | - | tig0039683:7952-7971 | Msa1458620:three_prime_UTR | 40.0% | |
| GCGTAATTCTAGCATAGTAG+TGG | + | tig0039683:8020-8039 | None:intergenic | 40.0% | |
| ! | CTTTGTTTGAGGTTCGGTAA+TGG | + | tig0039683:8099-8118 | None:intergenic | 40.0% |
| AGGAAGAGAAAGAATCGGTT+CGG | + | tig0039683:8223-8242 | None:intergenic | 40.0% | |
| ATTGGAATTGGGAGAAAGGA+AGG | + | tig0039683:8243-8262 | None:intergenic | 40.0% | |
| !!! | AGTTGTTTTTTGGGGAAACG+AGG | + | tig0039683:8296-8315 | None:intergenic | 40.0% |
| CAGAGAGAGAGAGATACTAA+CGG | + | tig0039683:8319-8338 | None:intergenic | 40.0% | |
| !! | AATTCAGGTTGCACAAAGAG+TGG | + | tig0039683:8522-8541 | None:intergenic | 40.0% |
| ATTGACATTGCAGTTGAGCT+AGG | + | tig0039683:8683-8702 | None:intergenic | 40.0% | |
| ATGGTACTGTGATTGATGGA+TGG | - | tig0039683:8987-9006 | Msa1458620:intron | 40.0% | |
| ! | TGGTACTGTGATTGATGGAT+GGG | - | tig0039683:8988-9007 | Msa1458620:intron | 40.0% |
| GTACATATGGGAACCACTTT+CGG | - | tig0039683:9065-9084 | Msa1458620:intron | 40.0% | |
| TACATATGGGAACCACTTTC+GGG | - | tig0039683:9066-9085 | Msa1458620:intron | 40.0% | |
| CATATGTTGTAACCCGAAAG+TGG | + | tig0039683:9081-9100 | None:intergenic | 40.0% | |
| !! | CACTTTCGGGTTACAACATA+TGG | - | tig0039683:9079-9098 | Msa1458620:intron | 40.0% |
| ACATATGGAGAATCTCATGG+AGG | - | tig0039683:9094-9113 | Msa1458620:intron | 40.0% | |
| ATTCCTCTATAGCCTCCAAA+GGG | + | tig0039683:9252-9271 | None:intergenic | 40.0% | |
| TATTCCTCTATAGCCTCCAA+AGG | + | tig0039683:9253-9272 | None:intergenic | 40.0% | |
| GTAAGGTTCTTGTGTATAGG+AGG | - | tig0039683:9383-9402 | Msa1458620:intron | 40.0% | |
| ! | CCTTTCTGGGAGTTGTAATT+CGG | + | tig0039683:9420-9439 | None:intergenic | 40.0% |
| CATGTATCAGTCTCCTTTCT+GGG | + | tig0039683:9433-9452 | None:intergenic | 40.0% | |
| ACATGTATCAGTCTCCTTTC+TGG | + | tig0039683:9434-9453 | None:intergenic | 40.0% | |
| TTGGGCACAAATACATGGAT+TGG | + | tig0039683:9583-9602 | None:intergenic | 40.0% | |
| ! | CAGTATTGGGCACAAATACA+TGG | + | tig0039683:9588-9607 | None:intergenic | 40.0% |
| AACCATGACCTTGATTTACG+TGG | - | tig0039683:9665-9684 | Msa1458620:intron | 40.0% | |
| ! | GCGAGATGTCATTAGCTTAT+AGG | - | tig0039683:9730-9749 | Msa1458620:CDS | 40.0% |
| GCAACCTATGACATGAAGTA+TGG | - | tig0039683:9768-9787 | Msa1458620:intron | 40.0% | |
| GACACCATACTTCATGTCAT+AGG | + | tig0039683:9775-9794 | None:intergenic | 40.0% | |
| CTGAACTCCTATATTTAGGG+TGG | - | tig0039683:9875-9894 | Msa1458620:intron | 40.0% | |
| ! | AACTCCTATATTTAGGGTGG+TGG | - | tig0039683:9878-9897 | Msa1458620:intron | 40.0% |
| TCTACCACCACCCTAAATAT+AGG | + | tig0039683:9885-9904 | None:intergenic | 40.0% | |
| GTGTCATGTGGTCATTAGAT+AGG | + | tig0039683:10197-10216 | None:intergenic | 40.0% | |
| ACTGCAAGTTGTTCAACTTG+AGG | + | tig0039683:10366-10385 | None:intergenic | 40.0% | |
| ! | TGTTTTCAGCTCCCATTTGA+TGG | - | tig0039683:10616-10635 | Msa1458620:intron | 40.0% |
| GATCCAGAAGTCCATCAAAT+GGG | + | tig0039683:10630-10649 | None:intergenic | 40.0% | |
| TGAAGAAGGTCTATGAGATG+GGG | + | tig0039683:10663-10682 | None:intergenic | 40.0% | |
| CTGAAGAAGGTCTATGAGAT+GGG | + | tig0039683:10664-10683 | None:intergenic | 40.0% | |
| ACTGAAGAAGGTCTATGAGA+TGG | + | tig0039683:10665-10684 | None:intergenic | 40.0% | |
| !! | ATTGTTATGGGCACTGAAGA+AGG | + | tig0039683:10677-10696 | None:intergenic | 40.0% |
| ! | ATTTTCTCTCTCTCAGCAAG+AGG | - | tig0039683:10776-10795 | Msa1458620:intron | 40.0% |
| ATAGAGTGAAATGGCCTACT+AGG | - | tig0039683:10881-10900 | Msa1458620:intron | 40.0% | |
| AATTGAGAACCAGACCTAGT+AGG | + | tig0039683:10898-10917 | None:intergenic | 40.0% | |
| AGACAAAAGGGTTAGAAAGC+AGG | + | tig0039683:10943-10962 | None:intergenic | 40.0% | |
| ! | GCAACTCTAAGGAAGACAAA+AGG | + | tig0039683:10956-10975 | None:intergenic | 40.0% |
| ATGTTGTCAAATCTGCACCA+TGG | - | tig0039683:11012-11031 | Msa1458620:intron | 40.0% | |
| ! | ACAATAGGTGTTGCAGTCAA+TGG | + | tig0039683:11056-11075 | None:intergenic | 40.0% |
| ! | ATCTGCAATGTTTCTGCCAT+AGG | - | tig0039683:11076-11095 | Msa1458620:intron | 40.0% |
| GCAACACCATGTTCATATAG+TGG | - | tig0039683:11101-11120 | Msa1458620:intron | 40.0% | |
| ! | GCAGAAAAGCATGAATAGGA+AGG | + | tig0039683:11264-11283 | None:intergenic | 40.0% |
| TGTGCAAGTACTAGAACAAG+GGG | - | tig0039683:11424-11443 | Msa1458620:intron | 40.0% | |
| ACAAGATCAGTATGGATAGG+AGG | + | tig0039683:11466-11485 | None:intergenic | 40.0% | |
| AGGGGAGATATCTAGTAAGT+AGG | + | tig0039683:11522-11541 | None:intergenic | 40.0% | |
| TCACCAATGCATGTTTGATG+CGG | - | tig0039683:11559-11578 | Msa1458620:CDS | 40.0% | |
| AATCCGCATCAAACATGCAT+TGG | + | tig0039683:11565-11584 | None:intergenic | 40.0% | |
| TTAAAGGAGTTCAAGGTCCA+GGG | + | tig0039683:11640-11659 | None:intergenic | 40.0% | |
| ATTAAAGGAGTTCAAGGTCC+AGG | + | tig0039683:11641-11660 | None:intergenic | 40.0% | |
| ACATATATCCACACCAAACG+GGG | + | tig0039683:11698-11717 | None:intergenic | 40.0% | |
| CACATATATCCACACCAAAC+GGG | + | tig0039683:11699-11718 | None:intergenic | 40.0% | |
| GCACATATATCCACACCAAA+CGG | + | tig0039683:11700-11719 | None:intergenic | 40.0% | |
| TTGTAGTCAAGCCTGCTTAT+CGG | - | tig0039683:12038-12057 | Msa1458620:intron | 40.0% | |
| !! | CTTTCTAGTTTCCGATAAGC+AGG | + | tig0039683:12052-12071 | None:intergenic | 40.0% |
| TGCACATTTACCAGTTGGAA+TGG | + | tig0039683:12402-12421 | None:intergenic | 40.0% | |
| AGGTCATTCTCGTCAAAACA+TGG | - | tig0039683:12594-12613 | Msa1458620:intron | 40.0% | |
| GGTCATTCTCGTCAAAACAT+GGG | - | tig0039683:12595-12614 | Msa1458620:intron | 40.0% | |
| TGAGCCAATTTGAAAGACTG+CGG | + | tig0039683:12882-12901 | None:intergenic | 40.0% | |
| CCAAAAAGTAATGGCAAACC+AGG | + | tig0039683:13016-13035 | None:intergenic | 40.0% | |
| !! | CCTGGTTTGCCATTACTTTT+TGG | - | tig0039683:13013-13032 | Msa1458620:intron | 40.0% |
| CAACAGAATCACCTTTCACT+CGG | + | tig0039683:13121-13140 | None:intergenic | 40.0% | |
| GTGTTGTAACATGCATTGTG+AGG | - | tig0039683:13144-13163 | Msa1458620:intron | 40.0% | |
| !! | AACAACCACGAGGGTTTTAT+CGG | - | tig0039683:13263-13282 | Msa1458620:intron | 40.0% |
| CGATGAAGAAGTTGTGTTTG+CGG | + | tig0039683:13675-13694 | None:intergenic | 40.0% | |
| GATGAGATGAGAAGATGAGA+TGG | + | tig0039683:13713-13732 | None:intergenic | 40.0% | |
| !! | GCTTTAGAGGCTTAAAGTGT+CGG | - | tig0039683:13887-13906 | Msa1458620:intron | 40.0% |
| GGACTAAAAGATGGTCTTTG+AGG | + | tig0039683:14207-14226 | None:intergenic | 40.0% | |
| CAAGCAATATTACAGTCGCA+GGG | + | tig0039683:14231-14250 | None:intergenic | 40.0% | |
| TCAAGCAATATTACAGTCGC+AGG | + | tig0039683:14232-14251 | None:intergenic | 40.0% | |
| TGCAAAACAATGCAAAGGAG+TGG | + | tig0039683:14622-14641 | None:intergenic | 40.0% | |
| TGACAAACTTGAAGCTGAGT+TGG | - | tig0039683:14743-14762 | Msa1458620:intron | 40.0% | |
| ATCAGTGCTTTGTCTTGTAC+AGG | - | tig0039683:14854-14873 | Msa1458620:intron | 40.0% | |
| TCAGTGCTTTGTCTTGTACA+GGG | - | tig0039683:14855-14874 | Msa1458620:intron | 40.0% | |
| AATCAGGGTGGAATTTCCAA+TGG | - | tig0039683:15149-15168 | Msa1458620:CDS | 40.0% | |
| !!! | CCTGGCATTGGTTTTTGATA+TGG | + | tig0039683:15323-15342 | None:intergenic | 40.0% |
| CCATATCAAAAACCAATGCC+AGG | - | tig0039683:15320-15339 | Msa1458620:intron | 40.0% | |
| TGGTTAGTAGAGTGATAAGG+AGG | + | tig0039683:15424-15443 | None:intergenic | 40.0% | |
| TGGTGGTTAGTAGAGTGATA+AGG | + | tig0039683:15427-15446 | None:intergenic | 40.0% | |
| !! | GGGATATAAGGTTGATTTGG+TGG | + | tig0039683:15444-15463 | None:intergenic | 40.0% |
| ! | GAGGGGATATAAGGTTGATT+TGG | + | tig0039683:15447-15466 | None:intergenic | 40.0% |
| ATAAGTGTGAAAACGGTGTG+GGG | + | tig0039683:15512-15531 | None:intergenic | 40.0% | |
| CATAAGTGTGAAAACGGTGT+GGG | + | tig0039683:15513-15532 | None:intergenic | 40.0% | |
| ACATAAGTGTGAAAACGGTG+TGG | + | tig0039683:15514-15533 | None:intergenic | 40.0% | |
| ACCATCATCTGATCAGTGTA+CGG | - | tig0039683:15647-15666 | Msa1458620:CDS | 40.0% | |
| ! | GGTTAGACATGCTGTGTTTT+CGG | - | tig0039683:15677-15696 | Msa1458620:intron | 40.0% |
| ! | GTTAGACATGCTGTGTTTTC+GGG | - | tig0039683:15678-15697 | Msa1458620:intron | 40.0% |
| ! | TTAGACATGCTGTGTTTTCG+GGG | - | tig0039683:15679-15698 | Msa1458620:intron | 40.0% |
| !!! | CCCCCATTTTTAGCTGATTT+AGG | - | tig0039683:15774-15793 | Msa1458620:intron | 40.0% |
| AGAAGCAATCTACAGTGACT+CGG | - | tig0039683:15908-15927 | Msa1458620:intron | 40.0% | |
| GATAGGCAGCATTTCAGAAA+AGG | + | tig0039683:16008-16027 | None:intergenic | 40.0% | |
| CGAGTTAACATTGTCCTGAA+AGG | - | tig0039683:16109-16128 | Msa1458620:intron | 40.0% | |
| ! | TCATTCTGGCTAGTGTTTAG+TGG | - | tig0039683:16558-16577 | Msa1458620:five_prime_UTR | 40.0% |
| TCCTTAAGAGATCCAGTTCT+TGG | - | tig0039683:16615-16634 | Msa1458620:five_prime_UTR | 40.0% | |
| TCCAAGAACTGGATCTCTTA+AGG | + | tig0039683:16619-16638 | None:intergenic | 40.0% | |
| GTGAATCCAAGAAGCGAACA+AGG | - | tig0039683:7845-7864 | Msa1458620:three_prime_UTR | 45.0% | |
| ! | GTTGTTGGTGAGTCGAGAAT+GGG | + | tig0039683:7894-7913 | None:intergenic | 45.0% |
| ! | AGTTGTTGGTGAGTCGAGAA+TGG | + | tig0039683:7895-7914 | None:intergenic | 45.0% |
| TTTGGTCATTGGTCCTTTGC+TGG | + | tig0039683:7932-7951 | None:intergenic | 45.0% | |
| AGTAACTGGGAAATGGTGGT+AGG | - | tig0039683:7976-7995 | Msa1458620:three_prime_UTR | 45.0% | |
| !! | ATTGGTTTGGTTGGTGGCAA+TGG | + | tig0039683:8049-8068 | None:intergenic | 45.0% |
| ! | TGTTTGAGGTTCGGTAATGG+TGG | + | tig0039683:8096-8115 | None:intergenic | 45.0% |
| ! | GGAAGAGAAAGAATCGGTTC+GGG | + | tig0039683:8222-8241 | None:intergenic | 45.0% |
| GGAGATTGGAATTGGGAGAA+AGG | + | tig0039683:8247-8266 | None:intergenic | 45.0% | |
| AGGGATCGGAGATTGGAATT+GGG | + | tig0039683:8254-8273 | None:intergenic | 45.0% | |
| !!! | GTTTTTTGGGGAAACGAGGA+CGG | + | tig0039683:8292-8311 | None:intergenic | 45.0% |
| ! | GTTACTGCTACTTCTCATGC+TGG | - | tig0039683:8940-8959 | Msa1458620:intron | 45.0% |
| TATGGAGAATCTCATGGAGG+AGG | - | tig0039683:9097-9116 | Msa1458620:intron | 45.0% | |
| ! | GGTGTTGGATGTGTCATTGA+TGG | - | tig0039683:9118-9137 | Msa1458620:intron | 45.0% |
| GCATATCAGCTTCAGAGAGA+GGG | + | tig0039683:9159-9178 | None:intergenic | 45.0% | |
| TGCATATCAGCTTCAGAGAG+AGG | + | tig0039683:9160-9179 | None:intergenic | 45.0% | |
| !! | CTCTGAAGCTGATATGCAAG+AGG | - | tig0039683:9162-9181 | Msa1458620:intron | 45.0% |
| TGCAAGAGGATCTTGACAGA+AGG | - | tig0039683:9176-9195 | Msa1458620:intron | 45.0% | |
| ! | GTTGTAATTCGGCTTTGACC+TGG | + | tig0039683:9409-9428 | None:intergenic | 45.0% |
| CCGAATTACAACTCCCAGAA+AGG | - | tig0039683:9417-9436 | Msa1458620:intron | 45.0% | |
| ATACTCTCAGGAGTTTCGGA+AGG | - | tig0039683:9457-9476 | Msa1458620:intron | 45.0% | |
| GTGCCCAATACTGATCAAAG+AGG | - | tig0039683:9595-9614 | Msa1458620:intron | 45.0% | |
| AGCCACGTAAATCAAGGTCA+TGG | + | tig0039683:9670-9689 | None:intergenic | 45.0% | |
| ! | GTATGGTGTCAGATCAGTTC+AGG | - | tig0039683:9785-9804 | Msa1458620:intron | 45.0% |
| TGGTGGTAGATCTTCTGCTA+GGG | - | tig0039683:9895-9914 | Msa1458620:intron | 45.0% | |
| TCTTCTGCTAGGGAAACCAT+TGG | - | tig0039683:9905-9924 | Msa1458620:intron | 45.0% | |
| TGCTAGGGAAACCATTGGAA+GGG | - | tig0039683:9910-9929 | Msa1458620:intron | 45.0% | |
| GATAGGAAATGGGAGCCTTT+CGG | + | tig0039683:10180-10199 | None:intergenic | 45.0% | |
| GGATCCAGAAGTCCATCAAA+TGG | + | tig0039683:10631-10650 | None:intergenic | 45.0% | |
| TATGAGATGGGGGAAAGAGA+CGG | + | tig0039683:10652-10671 | None:intergenic | 45.0% | |
| GAAGAAGGTCTATGAGATGG+GGG | + | tig0039683:10662-10681 | None:intergenic | 45.0% | |
| GAGTGAATTCACGAGTCACT+TGG | - | tig0039683:10801-10820 | Msa1458620:intron | 45.0% | |
| TTGTCAAATCTGCACCATGG+TGG | - | tig0039683:11015-11034 | Msa1458620:intron | 45.0% | |
| TGTCAAATCTGCACCATGGT+GGG | - | tig0039683:11016-11035 | Msa1458620:intron | 45.0% | |
| ! | ATAGGTGTTGCAGTCAATGG+TGG | + | tig0039683:11053-11072 | None:intergenic | 45.0% |
| AATGGCGAATGGCAGAGTAT+GGG | + | tig0039683:11141-11160 | None:intergenic | 45.0% | |
| !! | AGAGGAGGTTTTGGCAAAAG+TGG | + | tig0039683:11292-11311 | None:intergenic | 45.0% |
| !! | GATATGATGGATGACTGCAG+AGG | + | tig0039683:11310-11329 | None:intergenic | 45.0% |
| ! | TGGAAGCTTGCTTACCAGTT+TGG | - | tig0039683:11357-11376 | Msa1458620:intron | 45.0% |
| !! | ACCAGTTTGGTGTCACCAAA+AGG | - | tig0039683:11370-11389 | Msa1458620:intron | 45.0% |
| !! | ACCTTTTGGTGACACCAAAC+TGG | + | tig0039683:11374-11393 | None:intergenic | 45.0% |
| GATCAGTATGGATAGGAGGA+TGG | + | tig0039683:11462-11481 | None:intergenic | 45.0% | |
| GATCAAGTGTCAGTGTCTCA+TGG | + | tig0039683:11851-11870 | None:intergenic | 45.0% | |
| TGAGACACTGACACTTGATC+AGG | - | tig0039683:11851-11870 | Msa1458620:intron | 45.0% | |
| ! | GTCTGAACAGAAGAGCATGA+CGG | + | tig0039683:12850-12869 | None:intergenic | 45.0% |
| CTTGCCGCAGTCTTTCAAAT+TGG | - | tig0039683:12875-12894 | Msa1458620:CDS | 45.0% | |
| CAGGAATTCGACTTCAGAGA+TGG | + | tig0039683:12997-13016 | None:intergenic | 45.0% | |
| !! | CATCTCTGAAGTCGAATTCC+TGG | - | tig0039683:12995-13014 | Msa1458620:intron | 45.0% |
| TTCTCTGCATATTCAGGGTC+TGG | + | tig0039683:13074-13093 | None:intergenic | 45.0% | |
| ATTGATGCTGTCCGAGTGAA+AGG | - | tig0039683:13107-13126 | Msa1458620:intron | 45.0% | |
| CGAGTGAAAGGTGATTCTGT+TGG | - | tig0039683:13119-13138 | Msa1458620:intron | 45.0% | |
| GTGAAAGGTGATTCTGTTGG+TGG | - | tig0039683:13122-13141 | Msa1458620:intron | 45.0% | |
| GAGGTGAAAAGACTTACACG+TGG | + | tig0039683:13176-13195 | None:intergenic | 45.0% | |
| !! | ACAACCACGAGGGTTTTATC+GGG | - | tig0039683:13264-13283 | Msa1458620:intron | 45.0% |
| ! | GCGTTGCGTTTTTCCGTTTT+TGG | + | tig0039683:13452-13471 | None:intergenic | 45.0% |
| CGCAATTGCGGGTATAAAGT+GGG | - | tig0039683:13507-13526 | Msa1458620:intron | 45.0% | |
| !! | GGCTGTGTATTTGGTTCTGA+TGG | + | tig0039683:13654-13673 | None:intergenic | 45.0% |
| TGTGTTTGCGGCTGTGTATT+TGG | + | tig0039683:13663-13682 | None:intergenic | 45.0% | |
| CTGTTGTCAAAGCGGAAATG+CGG | + | tig0039683:14156-14175 | None:intergenic | 45.0% | |
| CATTTCCGCTTTGACAACAG+AGG | - | tig0039683:14156-14175 | Msa1458620:intron | 45.0% | |
| GCTGTGCTCTTTGGTTATCT+AGG | - | tig0039683:14346-14365 | Msa1458620:intron | 45.0% | |
| TATGTCATTGCCCGCAACTA+AGG | - | tig0039683:14776-14795 | Msa1458620:CDS | 45.0% | |
| ATGTCATTGCCCGCAACTAA+GGG | - | tig0039683:14777-14796 | Msa1458620:CDS | 45.0% | |
| !! | CAATTTGGTAGTGGGTTTGC+AGG | - | tig0039683:14804-14823 | Msa1458620:CDS | 45.0% |
| GTGTTCACTCCCAGTCAAAA+AGG | + | tig0039683:14957-14976 | None:intergenic | 45.0% | |
| ! | GTTGCGCTCAAGTTCTAACT+TGG | - | tig0039683:15354-15373 | Msa1458620:intron | 45.0% |
| TAAGTGTGAAAACGGTGTGG+GGG | + | tig0039683:15511-15530 | None:intergenic | 45.0% | |
| CCATCATCTGATCAGTGTAC+GGG | - | tig0039683:15648-15667 | Msa1458620:CDS | 45.0% | |
| TGATCAGTGTACGGGATGTA+TGG | - | tig0039683:15656-15675 | Msa1458620:CDS | 45.0% | |
| !! | TGTTTTCGGGGTAGCAATTG+AGG | - | tig0039683:15691-15710 | Msa1458620:intron | 45.0% |
| ! | ATCTTGCTGCTTCCATTCCT+TGG | - | tig0039683:15732-15751 | Msa1458620:intron | 45.0% |
| AACATCTGCATGCCAAGGAA+TGG | + | tig0039683:15747-15766 | None:intergenic | 45.0% | |
| ATGTGAACATCTGCATGCCA+AGG | + | tig0039683:15752-15771 | None:intergenic | 45.0% | |
| GTAGATTGCTTCTTCTGCAC+AGG | + | tig0039683:15901-15920 | None:intergenic | 45.0% | |
| GAAGCAATCTACAGTGACTC+GGG | - | tig0039683:15909-15928 | Msa1458620:intron | 45.0% | |
| ATGTAGCCGATCCAATCTAC+TGG | - | tig0039683:16171-16190 | Msa1458620:intron | 45.0% | |
| TGTAGCCGATCCAATCTACT+GGG | - | tig0039683:16172-16191 | Msa1458620:intron | 45.0% | |
| CACAAGTACCAAAGCTACCA+TGG | + | tig0039683:16387-16406 | None:intergenic | 45.0% | |
| !! | CATGGTAGCTTTGGTACTTG+TGG | - | tig0039683:16385-16404 | Msa1458620:intron | 45.0% |
| GGTACTTGTGGACCAATTGA+TGG | - | tig0039683:16397-16416 | Msa1458620:intron | 45.0% | |
| GTGCATGTTGTGCCATCAAT+TGG | + | tig0039683:16412-16431 | None:intergenic | 45.0% | |
| TTGGACTGCATGTCGTATTC+TGG | - | tig0039683:16634-16653 | Msa1458620:five_prime_UTR | 45.0% | |
| !! | TATATTATTATTACATTATT+TGG | - | tig0039683:8609-8628 | Msa1458620:intron | 5.0% |
| !!! | TTATTTTTAATACTTTTTTA+TGG | - | tig0039683:11988-12007 | Msa1458620:intron | 5.0% |
| !! | TTATTTGATATTTAAATAAT+AGG | - | tig0039683:14484-14503 | Msa1458620:intron | 5.0% |
| GTGAGTCGAGAATGGGAAGA+TGG | + | tig0039683:7887-7906 | None:intergenic | 50.0% | |
| ACCAAAGCAGACACCAGCAA+AGG | - | tig0039683:7916-7935 | Msa1458620:three_prime_UTR | 50.0% | |
| TCCTTTGCTGGTGTCTGCTT+TGG | + | tig0039683:7920-7939 | None:intergenic | 50.0% | |
| !! | GAGAAAGAATCGGTTCGGGA+AGG | + | tig0039683:8218-8237 | None:intergenic | 50.0% |
| GAGGGATCGGAGATTGGAAT+TGG | + | tig0039683:8255-8274 | None:intergenic | 50.0% | |
| TGCAGTTGAGCTAGGCCTTA+CGG | + | tig0039683:8675-8694 | None:intergenic | 50.0% | |
| ! | TAGGCTGGACACTTTTCACC+CGG | - | tig0039683:8708-8727 | Msa1458620:intron | 50.0% |
| TCTCATGCTGGTCGCATCTT+AGG | - | tig0039683:8952-8971 | Msa1458620:intron | 50.0% | |
| TTTACAGAGATTCGGGCAGC+TGG | - | tig0039683:9040-9059 | Msa1458620:intron | 50.0% | |
| TTACAGAGATTCGGGCAGCT+GGG | - | tig0039683:9041-9060 | Msa1458620:intron | 50.0% | |
| ! | GAATCTCATGGAGGAGGTGT+TGG | - | tig0039683:9103-9122 | Msa1458620:intron | 50.0% |
| TATCAGCTTCAGAGAGAGGG+AGG | + | tig0039683:9156-9175 | None:intergenic | 50.0% | |
| ! | AAGCCCTTTGGAGGCTATAG+AGG | - | tig0039683:9246-9265 | Msa1458620:intron | 50.0% |
| GTTCTTGTGTATAGGAGGCC+AGG | - | tig0039683:9388-9407 | Msa1458620:intron | 50.0% | |
| AGCTTATAGGCCTTCCCATG+CGG | - | tig0039683:9743-9762 | Msa1458620:CDS | 50.0% | |
| GTCATAGGTTGCATCCGCAT+GGG | + | tig0039683:9760-9779 | None:intergenic | 50.0% | |
| TGTCATAGGTTGCATCCGCA+TGG | + | tig0039683:9761-9780 | None:intergenic | 50.0% | |
| GTGGTGGTAGATCTTCTGCT+AGG | - | tig0039683:9894-9913 | Msa1458620:intron | 50.0% | |
| CTGCTAGGGAAACCATTGGA+AGG | - | tig0039683:9909-9928 | Msa1458620:intron | 50.0% | |
| ACCATTGGAAGGGTTGCTTC+TGG | - | tig0039683:9920-9939 | Msa1458620:CDS | 50.0% | |
| ACCAGAAGCAACCCTTCCAA+TGG | + | tig0039683:9924-9943 | None:intergenic | 50.0% | |
| !! | GCTCCCATTTGATGGACTTC+TGG | - | tig0039683:10624-10643 | Msa1458620:intron | 50.0% |
| GTGAAATGGCCTACTAGGTC+TGG | - | tig0039683:10886-10905 | Msa1458620:intron | 50.0% | |
| GGCTAACACAAAACCCACCA+TGG | + | tig0039683:11032-11051 | None:intergenic | 50.0% | |
| ATGGCGAATGGCAGAGTATG+GGG | + | tig0039683:11140-11159 | None:intergenic | 50.0% | |
| CAATGGCGAATGGCAGAGTA+TGG | + | tig0039683:11142-11161 | None:intergenic | 50.0% | |
| ! | GATGACTGCAGAGGAGGTTT+TGG | + | tig0039683:11301-11320 | None:intergenic | 50.0% |
| !! | ATGATGGATGACTGCAGAGG+AGG | + | tig0039683:11307-11326 | None:intergenic | 50.0% |
| CAGGGTTCGAATCTTGGCAA+GGG | + | tig0039683:11622-11641 | None:intergenic | 50.0% | |
| AAGGTCCAGGGTTCGAATCT+TGG | + | tig0039683:11628-11647 | None:intergenic | 50.0% | |
| ATATCCACACCAAACGGGGA+GGG | + | tig0039683:11694-11713 | None:intergenic | 50.0% | |
| TATATCCACACCAAACGGGG+AGG | + | tig0039683:11695-11714 | None:intergenic | 50.0% | |
| CCTGTGCACTTGAGAGACAT+AGG | + | tig0039683:11802-11821 | None:intergenic | 50.0% | |
| CCTATGTCTCTCAAGTGCAC+AGG | - | tig0039683:11799-11818 | Msa1458620:intron | 50.0% | |
| GTTTCCCGATAAAACCCTCG+TGG | + | tig0039683:13271-13290 | None:intergenic | 50.0% | |
| TTGTCAATAGTGGCCGATCG+CGG | - | tig0039683:13421-13440 | Msa1458620:intron | 50.0% | |
| GCGCAATTGCGGGTATAAAG+TGG | - | tig0039683:13506-13525 | Msa1458620:intron | 50.0% | |
| !! | TCGCAGGGTGGACTAAAAGA+TGG | + | tig0039683:14216-14235 | None:intergenic | 50.0% |
| GCAATATTACAGTCGCAGGG+TGG | + | tig0039683:14228-14247 | None:intergenic | 50.0% | |
| ! | CTCAGACTAGCTGTGCTCTT+TGG | - | tig0039683:14337-14356 | Msa1458620:intron | 50.0% |
| AGGACAAGAACAAACCGCTC+TGG | - | tig0039683:15013-15032 | Msa1458620:intron | 50.0% | |
| ACAAGAACAAACCGCTCTGG+TGG | - | tig0039683:15016-15035 | Msa1458620:intron | 50.0% | |
| CAAGAACAAACCGCTCTGGT+GGG | - | tig0039683:15017-15036 | Msa1458620:intron | 50.0% | |
| ATACCTGTATCCCACCAGAG+CGG | + | tig0039683:15030-15049 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGGA+TGG | + | tig0039683:15230-15249 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | tig0039683:15232-15251 | None:intergenic | 50.0% | |
| CTCATTTACTCCCCTGGCAT+TGG | + | tig0039683:15335-15354 | None:intergenic | 50.0% | |
| CCCGTACACTGATCAGATGA+TGG | + | tig0039683:15651-15670 | None:intergenic | 50.0% | |
| AGGCTGAGATACCAACCTCT+CGG | + | tig0039683:15988-16007 | None:intergenic | 50.0% | |
| TGAACTTGCAGCTGTACCCA+TGG | - | tig0039683:16355-16374 | Msa1458620:intron | 50.0% | |
| ACGACATGCAGTCCAAGAAC+TGG | + | tig0039683:16630-16649 | None:intergenic | 50.0% | |
| AAAGCCACGTGGGCAGTAAC+TGG | - | tig0039683:7962-7981 | Msa1458620:three_prime_UTR | 55.0% | |
| AAGCCACGTGGGCAGTAACT+GGG | - | tig0039683:7963-7982 | Msa1458620:three_prime_UTR | 55.0% | |
| TTTCCCAGTTACTGCCCACG+TGG | + | tig0039683:7969-7988 | None:intergenic | 55.0% | |
| CGTGGGCAGTAACTGGGAAA+TGG | - | tig0039683:7969-7988 | Msa1458620:three_prime_UTR | 55.0% | |
| GGGCAGTAACTGGGAAATGG+TGG | - | tig0039683:7972-7991 | Msa1458620:three_prime_UTR | 55.0% | |
| GGTGGAGATCGAAGAAGCCA+TGG | + | tig0039683:8180-8199 | None:intergenic | 55.0% | |
| AGGAGTGAGGAAGGGTTTGG+TGG | + | tig0039683:8198-8217 | None:intergenic | 55.0% | |
| GGAAGGAGTGAGGAAGGGTT+TGG | + | tig0039683:8201-8220 | None:intergenic | 55.0% | |
| GTTCGGGAAGGAGTGAGGAA+GGG | + | tig0039683:8206-8225 | None:intergenic | 55.0% | |
| !! | AATCGGTTCGGGAAGGAGTG+AGG | + | tig0039683:8211-8230 | None:intergenic | 55.0% |
| GAAACGAGGACGGAGGTAGA+CGG | + | tig0039683:8282-8301 | None:intergenic | 55.0% | |
| !! | TTTTGGGGAAACGAGGACGG+AGG | + | tig0039683:8289-8308 | None:intergenic | 55.0% |
| ! | AGGCTGGACACTTTTCACCC+GGG | - | tig0039683:8709-8728 | Msa1458620:intron | 55.0% |
| ! | GGGCAGCTGGGAGTACATAT+GGG | - | tig0039683:9053-9072 | Msa1458620:intron | 55.0% |
| TAGGTTGCATCCGCATGGGA+AGG | + | tig0039683:9756-9775 | None:intergenic | 55.0% | |
| GAAATGGGAGCCTTTCGGCA+GGG | + | tig0039683:10175-10194 | None:intergenic | 55.0% | |
| CTGGGTCAAGCGCAACTCTA+AGG | + | tig0039683:10967-10986 | None:intergenic | 55.0% | |
| !! | GAACATGGTGTTGCGGCCTA+TGG | + | tig0039683:11095-11114 | None:intergenic | 55.0% |
| CCAGGGTTCGAATCTTGGCA+AGG | + | tig0039683:11623-11642 | None:intergenic | 55.0% | |
| CCTTGCCAAGATTCGAACCC+TGG | - | tig0039683:11620-11639 | Msa1458620:CDS | 55.0% | |
| TATCCACACCAAACGGGGAG+GGG | + | tig0039683:11693-11712 | None:intergenic | 55.0% | |
| TTTCTCCAAACGCTCCGCGT+TGG | + | tig0039683:13481-13500 | None:intergenic | 55.0% | |
| GGTATAAAGTGGGCGCGATG+CGG | - | tig0039683:13517-13536 | Msa1458620:intron | 55.0% | |
| GTATAAAGTGGGCGCGATGC+GGG | - | tig0039683:13518-13537 | Msa1458620:intron | 55.0% | |
| AGCGGGCACTATTTCGGTGA+CGG | + | tig0039683:14084-14103 | None:intergenic | 55.0% | |
| GGCCACCCCAAAAATTGACG+CGG | + | tig0039683:14125-14144 | None:intergenic | 55.0% | |
| AAACCGCTCTGGTGGGATAC+AGG | - | tig0039683:15024-15043 | Msa1458620:intron | 55.0% | |
| GCGCAACTCATTTACTCCCC+TGG | + | tig0039683:15341-15360 | None:intergenic | 55.0% | |
| GAAACAGAGCTCATAGCCCG+TGG | - | tig0039683:15940-15959 | Msa1458620:intron | 55.0% | |
| ACAGGGATCATGACGACCAC+GGG | + | tig0039683:15959-15978 | None:intergenic | 55.0% | |
| CACAGGGATCATGACGACCA+CGG | + | tig0039683:15960-15979 | None:intergenic | 55.0% | |
| CAACCTCTCGGGACAACACA+GGG | + | tig0039683:15976-15995 | None:intergenic | 55.0% | |
| GGCTGAGATACCAACCTCTC+GGG | + | tig0039683:15987-16006 | None:intergenic | 55.0% | |
| TGCAGCTGTACCCATGGTAG+AGG | - | tig0039683:16361-16380 | Msa1458620:intron | 55.0% | |
| TGTACCCATGGTAGAGGCCA+TGG | - | tig0039683:16367-16386 | Msa1458620:intron | 55.0% | |
| GCTACCATGGCCTCTACCAT+GGG | + | tig0039683:16374-16393 | None:intergenic | 55.0% | |
| AGCTACCATGGCCTCTACCA+TGG | + | tig0039683:16375-16394 | None:intergenic | 55.0% | |
| GGTAGAGGCCATGGTAGCTT+TGG | - | tig0039683:16376-16395 | Msa1458620:intron | 55.0% | |
| GGTTCGGGAAGGAGTGAGGA+AGG | + | tig0039683:8207-8226 | None:intergenic | 60.0% | |
| GGAGGAGAGGGATCGGAGAT+TGG | + | tig0039683:8261-8280 | None:intergenic | 60.0% | |
| GGTAGACGGAGGAGAGGGAT+CGG | + | tig0039683:8268-8287 | None:intergenic | 60.0% | |
| ACGGAGGTAGACGGAGGAGA+GGG | + | tig0039683:8273-8292 | None:intergenic | 60.0% | |
| ! | CGGGCAGCTGGGAGTACATA+TGG | - | tig0039683:9052-9071 | Msa1458620:intron | 60.0% |
| TCTGCAACCTCCCTGCCGAA+AGG | - | tig0039683:10162-10181 | Msa1458620:intron | 60.0% | |
| GGAAATGGGAGCCTTTCGGC+AGG | + | tig0039683:10176-10195 | None:intergenic | 60.0% | |
| GAGGGGATGGGTAGCTCACT+TGG | + | tig0039683:11676-11695 | None:intergenic | 60.0% | |
| ACACCAAACGGGGAGGGGAT+GGG | + | tig0039683:11688-11707 | None:intergenic | 60.0% | |
| ! | CGCGGAGCGTTTGGAGAAAG+CGG | - | tig0039683:13482-13501 | Msa1458620:intron | 60.0% |
| ! | GCGGAGCGTTTGGAGAAAGC+GGG | - | tig0039683:13483-13502 | Msa1458620:intron | 60.0% |
| ! | CGGAGCGTTTGGAGAAAGCG+GGG | - | tig0039683:13484-13503 | Msa1458620:intron | 60.0% |
| GAGAAAGCGGGGCGCAATTG+CGG | - | tig0039683:13495-13514 | Msa1458620:intron | 60.0% | |
| AGAAAGCGGGGCGCAATTGC+GGG | - | tig0039683:13496-13515 | Msa1458620:intron | 60.0% | |
| CGGGCACTATTTCGGTGACG+GGG | + | tig0039683:14082-14101 | None:intergenic | 60.0% | |
| GCGGGCACTATTTCGGTGAC+GGG | + | tig0039683:14083-14102 | None:intergenic | 60.0% | |
| !! | GCGCGTAGCGGGCACTATTT+CGG | + | tig0039683:14090-14109 | None:intergenic | 60.0% |
| CCAAAAATTGACGCGGCGCG+GGG | + | tig0039683:14118-14137 | None:intergenic | 60.0% | |
| CCCAAAAATTGACGCGGCGC+GGG | + | tig0039683:14119-14138 | None:intergenic | 60.0% | |
| ! | CCCGCGCCGCGTCAATTTTT+GGG | - | tig0039683:14116-14135 | Msa1458620:intron | 60.0% |
| CCCCAAAAATTGACGCGGCG+CGG | + | tig0039683:14120-14139 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | tig0039683:14117-14136 | Msa1458620:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | tig0039683:14120-14139 | Msa1458620:intron | 60.0% |
| TGTGAAAACGGTGTGGGGGC+GGG | + | tig0039683:15507-15526 | None:intergenic | 60.0% | |
| GTGTGAAAACGGTGTGGGGG+CGG | + | tig0039683:15508-15527 | None:intergenic | 60.0% | |
| GATCCCTGTGTTGTCCCGAG+AGG | - | tig0039683:15970-15989 | Msa1458620:intron | 60.0% | |
| CCAACCTCTCGGGACAACAC+AGG | + | tig0039683:15977-15996 | None:intergenic | 60.0% | |
| CCTGTGTTGTCCCGAGAGGT+TGG | - | tig0039683:15974-15993 | Msa1458620:intron | 60.0% | |
| GACGGAGGTAGACGGAGGAG+AGG | + | tig0039683:8274-8293 | None:intergenic | 65.0% | |
| ACGAGGACGGAGGTAGACGG+AGG | + | tig0039683:8279-8298 | None:intergenic | 65.0% | |
| GGCGGTGTCTGCTGTCCGTA+AGG | - | tig0039683:8657-8676 | Msa1458620:intron | 65.0% | |
| GAGCAGAACTGCGAGGTCCC+GGG | + | tig0039683:8729-8748 | None:intergenic | 65.0% | |
| CGAGCAGAACTGCGAGGTCC+CGG | + | tig0039683:8730-8749 | None:intergenic | 65.0% | |
| ACCTCGCAGTTCTGCTCGCG+AGG | - | tig0039683:8732-8751 | Msa1458620:intron | 65.0% | |
| TCAGAGAGAGGGAGGCGAGG+AGG | + | tig0039683:9148-9167 | None:intergenic | 65.0% | |
| GCTTCAGAGAGAGGGAGGCG+AGG | + | tig0039683:9151-9170 | None:intergenic | 65.0% | |
| ATGGGAGCCTTTCGGCAGGG+AGG | + | tig0039683:10172-10191 | None:intergenic | 65.0% | |
| CTACCCATCCCCTCCCCGTT+TGG | - | tig0039683:11682-11701 | Msa1458620:intron | 65.0% | |
| CACACCAAACGGGGAGGGGA+TGG | + | tig0039683:11689-11708 | None:intergenic | 65.0% | |
| ! | CATCCCCTCCCCGTTTGGTG+TGG | - | tig0039683:11687-11706 | Msa1458620:intron | 65.0% |
| AATAGTGGCCGATCGCGGCG+CGG | - | tig0039683:13426-13445 | Msa1458620:intron | 65.0% | |
| !!! | GTTTTTGGCCGCGCCGCGAT+CGG | + | tig0039683:13437-13456 | None:intergenic | 65.0% |
| GATCGCGGCGCGGCCAAAAA+CGG | - | tig0039683:13436-13455 | Msa1458620:intron | 65.0% | |
| ! | CCCCGCGCCGCGTCAATTTT+TGG | - | tig0039683:14115-14134 | Msa1458620:intron | 65.0% |
| GCCTCGCGAGCAGAACTGCG+AGG | + | tig0039683:8736-8755 | None:intergenic | 70.0% | |
| CGCAACGCAGCGCTCCAACG+CGG | - | tig0039683:13464-13483 | Msa1458620:intron | 70.0% | |
| ! | GCGCTCCAACGCGGAGCGTT+TGG | - | tig0039683:13473-13492 | Msa1458620:intron | 70.0% |
| GGGCGCGATGCGGGTCAAAG+CGG | - | tig0039683:13527-13546 | Msa1458620:intron | 70.0% | |
| GGCGCGATGCGGGTCAAAGC+GGG | - | tig0039683:13528-13547 | Msa1458620:intron | 70.0% | |
| AATTGACGCGGCGCGGGGTG+CGG | + | tig0039683:14113-14132 | None:intergenic | 70.0% | |
| AGCGGAAATGCGGCGCGACG+CGG | + | tig0039683:14146-14165 | None:intergenic | 70.0% | |
| ATTGACGCGGCGCGGGGTGC+GGG | + | tig0039683:14112-14131 | None:intergenic | 75.0% | |
| ! | GCGGGGTGCGGGCGCGTAGC+GGG | + | tig0039683:14101-14120 | None:intergenic | 85.0% |
| ! | CGCGGGGTGCGGGCGCGTAG+CGG | + | tig0039683:14102-14121 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039683 | gene | 7821 | 16915 | 7821 | ID=Msa1458620;Name=Msa1458620 |
| tig0039683 | mRNA | 7821 | 16915 | 7821 | ID=Msa1458620-mRNA-1;Parent=Msa1458620;Name=Msa1458620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=358|1|1|1|1|1|13|404|436 |
| tig0039683 | exon | 7821 | 8370 | 7821 | ID=Msa1458620-mRNA-1:exon:21860;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 8745 | 8829 | 8745 | ID=Msa1458620-mRNA-1:exon:21859;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 9516 | 9581 | 9516 | ID=Msa1458620-mRNA-1:exon:21858;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 9691 | 9785 | 9691 | ID=Msa1458620-mRNA-1:exon:21857;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 9911 | 10013 | 9911 | ID=Msa1458620-mRNA-1:exon:21856;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 11558 | 11689 | 11558 | ID=Msa1458620-mRNA-1:exon:21855;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 12864 | 12944 | 12864 | ID=Msa1458620-mRNA-1:exon:21854;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 14751 | 14843 | 14751 | ID=Msa1458620-mRNA-1:exon:21853;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 14930 | 15013 | 14930 | ID=Msa1458620-mRNA-1:exon:21852;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 15115 | 15173 | 15115 | ID=Msa1458620-mRNA-1:exon:21851;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 15258 | 15334 | 15258 | ID=Msa1458620-mRNA-1:exon:21850;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 15539 | 15689 | 15539 | ID=Msa1458620-mRNA-1:exon:21849;Parent=Msa1458620-mRNA-1 |
| tig0039683 | exon | 16419 | 16915 | 16419 | ID=Msa1458620-mRNA-1:exon:21848;Parent=Msa1458620-mRNA-1 |
| tig0039683 | five_prime_UTR | 16558 | 16915 | 16558 | ID=Msa1458620-mRNA-1:five_prime_utr;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 16419 | 16557 | 16419 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 15539 | 15689 | 15539 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 15258 | 15334 | 15258 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 15115 | 15173 | 15115 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 14930 | 15013 | 14930 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 14751 | 14843 | 14751 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 12864 | 12944 | 12864 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 11558 | 11689 | 11558 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 9911 | 10013 | 9911 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 9691 | 9785 | 9691 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 9516 | 9581 | 9516 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 8745 | 8829 | 8745 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | CDS | 8225 | 8370 | 8225 | ID=Msa1458620-mRNA-1:cds;Parent=Msa1458620-mRNA-1 |
| tig0039683 | three_prime_UTR | 7821 | 8224 | 7821 | ID=Msa1458620-mRNA-1:three_prime_utr;Parent=Msa1458620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
