Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461950 | XP_003626533.1 | 100.000 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 5.82e-176 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461950 | sp|Q9SP08|RRP41_ARATH | 80.579 | 242 | 45 | 2 | 1 | 241 | 1 | 241 | 2.43e-140 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461950 | G7L401 | 100.000 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 2.78e-176 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1404240 | Msa1461950 | 0.813827 | 2.101577e-51 | -8.615850e-47 |
| Msa0183010 | Msa1461950 | 0.808633 | 2.813882e-50 | -8.615850e-47 |
| Msa0230640 | Msa1461950 | 0.816317 | 5.885651e-52 | -8.615850e-47 |
| Msa0388030 | Msa1461950 | 0.802685 | 4.990102e-49 | -8.615850e-47 |
| Msa1130190 | Msa1461950 | 0.973093 | 7.558851e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461950 | MtrunA17_Chr7g0275341 | 100.000 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 5.35e-180 | 493 |
| Msa1461950 | MtrunA17_Chr3g0114941 | 72.662 | 139 | 8 | 1 | 103 | 241 | 1 | 109 | 1.69e-61 | 188 |
| Msa1461950 | MtrunA17_Chr4g0028851 | 32.432 | 222 | 145 | 3 | 10 | 231 | 33 | 249 | 1.40e-30 | 114 |
| Msa1461950 | MtrunA17_Chr7g0247281 | 29.255 | 188 | 114 | 5 | 10 | 188 | 5 | 182 | 1.69e-19 | 84.3 |
| Msa1461950 | MtrunA17_Chr7g0254071 | 25.714 | 245 | 163 | 6 | 8 | 235 | 443 | 685 | 6.34e-13 | 67.8 |
| Msa1461950 | MtrunA17_Chr6g0449871 | 27.126 | 247 | 158 | 7 | 7 | 234 | 353 | 596 | 7.51e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461950 | AT3G61620.2 | 80.579 | 242 | 45 | 2 | 1 | 241 | 1 | 241 | 2.47e-141 | 395 |
| Msa1461950 | AT3G61620.1 | 80.579 | 242 | 45 | 2 | 1 | 241 | 1 | 241 | 2.47e-141 | 395 |
| Msa1461950 | AT4G27490.4 | 30.594 | 219 | 147 | 3 | 10 | 228 | 34 | 247 | 8.81e-27 | 104 |
| Msa1461950 | AT4G27490.3 | 30.594 | 219 | 147 | 3 | 10 | 228 | 34 | 247 | 8.81e-27 | 104 |
| Msa1461950 | AT4G27490.1 | 30.594 | 219 | 147 | 3 | 10 | 228 | 34 | 247 | 8.81e-27 | 104 |
| Msa1461950 | AT4G27490.7 | 30.392 | 204 | 137 | 3 | 25 | 228 | 7 | 205 | 9.71e-25 | 97.8 |
| Msa1461950 | AT4G27490.2 | 38.514 | 148 | 86 | 3 | 10 | 157 | 34 | 176 | 1.42e-24 | 97.1 |
| Msa1461950 | AT4G27490.5 | 38.514 | 148 | 86 | 3 | 10 | 157 | 34 | 176 | 1.42e-24 | 97.1 |
| Msa1461950 | AT4G27490.6 | 38.514 | 148 | 86 | 3 | 10 | 157 | 34 | 176 | 1.42e-24 | 97.1 |
| Msa1461950 | AT3G46210.1 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
| Msa1461950 | AT3G46210.5 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
| Msa1461950 | AT3G46210.7 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
| Msa1461950 | AT3G46210.3 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
| Msa1461950 | AT3G46210.6 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
| Msa1461950 | AT3G46210.4 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
| Msa1461950 | AT3G46210.2 | 30.366 | 191 | 107 | 7 | 10 | 188 | 5 | 181 | 3.22e-18 | 81.3 |
Find 95 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTCATTGCTGCTGTTTA+TGG | 0.176064 | tig0041814:-9878 | Msa1461950:CDS |
| CCAACTTTCCTTTGATTTAT+CGG | 0.216473 | tig0041814:-5806 | Msa1461950:three_prime_UTR |
| CCATCAGAGCGAAGTCCTTC+TGG | 0.228152 | tig0041814:+10176 | None:intergenic |
| TAAACTACCAATTGATATAT+TGG | 0.234288 | tig0041814:-6384 | Msa1461950:CDS |
| ATATATTTCAGGTGCAAAAT+AGG | 0.283714 | tig0041814:-9698 | Msa1461950:intron |
| TCGAATAACCAGAGAAATTT+CGG | 0.285988 | tig0041814:+8299 | None:intergenic |
| CTCCATCTGCTTGGAGAACT+TGG | 0.292775 | tig0041814:+7995 | None:intergenic |
| CAAAATTCTAATTCAAGCTT+TGG | 0.325359 | tig0041814:+5831 | None:intergenic |
| AGATAAAGTGACCCTTCTTC+AGG | 0.347749 | tig0041814:-7489 | Msa1461950:intron |
| GTTCTATTCATTTATAAAAC+AGG | 0.361890 | tig0041814:+10557 | None:intergenic |
| GAGCCTTGTCGCTCATTTGT+TGG | 0.363291 | tig0041814:+9673 | None:intergenic |
| CAACTTTCCTTTGATTTATC+GGG | 0.375307 | tig0041814:-5805 | Msa1461950:three_prime_UTR |
| TGAATAGAACGACAGCGATT+TGG | 0.378170 | tig0041814:-10544 | Msa1461950:five_prime_UTR |
| TTGTATAAATGCTGCAACTT+TGG | 0.382650 | tig0041814:-7795 | Msa1461950:CDS |
| ACTTTGGCCCTAGCTGATGC+TGG | 0.384721 | tig0041814:-7779 | Msa1461950:CDS |
| CTGTAATAGAACCTGGGAAC+GGG | 0.392644 | tig0041814:+8239 | None:intergenic |
| CCGATAAATCAAAGGAAAGT+TGG | 0.403826 | tig0041814:+5806 | None:intergenic |
| CATTGTTGTTATGAGTTCAA+TGG | 0.404286 | tig0041814:+5869 | None:intergenic |
| ATTGGAAAATGTTATGCAAC+TGG | 0.415824 | tig0041814:-6366 | Msa1461950:CDS |
| CGATAAATCAAAGGAAAGTT+GGG | 0.416618 | tig0041814:+5807 | None:intergenic |
| AGAACTAACCTGTCGCCCTT+TGG | 0.422174 | tig0041814:+9485 | None:intergenic |
| CTCTGATGGTCGCCGACCCA+TGG | 0.452782 | tig0041814:-10162 | Msa1461950:CDS |
| AGGGTCACTTTATCTAACTT+TGG | 0.454499 | tig0041814:+7497 | None:intergenic |
| ACATTTAATGCCCCGTTCCC+AGG | 0.456965 | tig0041814:-8250 | Msa1461950:intron |
| GGAGAAAATTTACCTGAAGA+AGG | 0.462062 | tig0041814:+7477 | None:intergenic |
| CTTGTAACTTCCTGTAGTGC+TGG | 0.463780 | tig0041814:-7740 | Msa1461950:CDS |
| GGCGGCTCACTGCAGTGCCA+AGG | 0.467354 | tig0041814:+10448 | None:intergenic |
| CGACAAATTCGAGCAGAGAT+TGG | 0.468538 | tig0041814:-10033 | Msa1461950:CDS |
| CAAGCAGAGGGGTGCTATTG+AGG | 0.468802 | tig0041814:+7714 | None:intergenic |
| CATCAGAGCGAAGTCCTTCT+GGG | 0.469663 | tig0041814:+10177 | None:intergenic |
| TGATTGTAAAGTACCTCTCT+AGG | 0.473493 | tig0041814:+9854 | None:intergenic |
| GGGAAACGGCAGTACTTCCA+TGG | 0.478515 | tig0041814:+10145 | None:intergenic |
| AAGTATCTACCCATCAGCTT+TGG | 0.481023 | tig0041814:+10002 | None:intergenic |
| GAGATCAACCGAAATTTCTC+TGG | 0.484302 | tig0041814:-8307 | Msa1461950:CDS |
| ACAAATGAGCGACAAGGCTC+TGG | 0.488464 | tig0041814:-9670 | Msa1461950:intron |
| AAATGTTATGCAACTGGCTA+CGG | 0.489876 | tig0041814:-6360 | Msa1461950:CDS |
| ATTGAGGTATCCAGCACTAC+AGG | 0.490303 | tig0041814:+7730 | None:intergenic |
| AACTATGTAGAAGACAGTGC+TGG | 0.505585 | tig0041814:-7548 | Msa1461950:CDS |
| CTCAATAGCACCCCTCTGCT+TGG | 0.505964 | tig0041814:-7713 | Msa1461950:intron |
| CCAGAAGGACTTCGCTCTGA+TGG | 0.509153 | tig0041814:-10176 | Msa1461950:CDS |
| TGTCAATATGCATTCTTCCA+TGG | 0.513511 | tig0041814:+8272 | None:intergenic |
| TGAGGAAACCAAAGGGCGAC+AGG | 0.514912 | tig0041814:-9493 | Msa1461950:intron |
| ATGAATTACCTCCATCTGCT+TGG | 0.515754 | tig0041814:+7986 | None:intergenic |
| CTTTGGCCCTAGCTGATGCT+GGG | 0.520390 | tig0041814:-7778 | Msa1461950:CDS |
| AGAATTCTATTGTTGGCATA+CGG | 0.520542 | tig0041814:-5992 | Msa1461950:three_prime_UTR |
| ATGGAGTACGTCAGCCCAGA+AGG | 0.521251 | tig0041814:-10191 | Msa1461950:CDS |
| GAGAAAATTTACCTGAAGAA+GGG | 0.526816 | tig0041814:+7478 | None:intergenic |
| GCGGCTCACTGCAGTGCCAA+GGG | 0.529025 | tig0041814:+10449 | None:intergenic |
| ATAAACAGCAGCAATGACTT+TGG | 0.529559 | tig0041814:+9880 | None:intergenic |
| ATACTATATAAAATTTCAGT+AGG | 0.533356 | tig0041814:-5752 | Msa1461950:three_prime_UTR |
| TAGGGATCCCAGCATCAGCT+AGG | 0.534689 | tig0041814:+7771 | None:intergenic |
| AGAATTCCTACAGTTACATC+AGG | 0.541883 | tig0041814:+7521 | None:intergenic |
| ACTGCAGTGCCAAGGGTGGT+CGG | 0.543700 | tig0041814:+10456 | None:intergenic |
| ACTATGTAGAAGACAGTGCT+GGG | 0.550161 | tig0041814:-7547 | Msa1461950:CDS |
| TGAAGCAAAGAACAGAGAGA+TGG | 0.552709 | tig0041814:-10210 | Msa1461950:intron |
| ACATATACATACCAAGCAGA+GGG | 0.554010 | tig0041814:+7702 | None:intergenic |
| CAAAGCAACTTGAGTATCGA+AGG | 0.554974 | tig0041814:-6189 | Msa1461950:CDS |
| TCAATGGTATCCTGAAAACT+AGG | 0.561204 | tig0041814:+5885 | None:intergenic |
| GGCACTGCAGTGAGCCGCCG+CGG | 0.562479 | tig0041814:-10444 | Msa1461950:five_prime_UTR |
| TCTGGTTATTCGACAAACCA+TGG | 0.564931 | tig0041814:-8289 | Msa1461950:CDS |
| GTCCAAGTTCTCCAAGCAGA+TGG | 0.566076 | tig0041814:-7997 | Msa1461950:CDS |
| GAAGTTACAAGATCAAGCAT+AGG | 0.570197 | tig0041814:+7752 | None:intergenic |
| TGCTGTTTATGGCCCTAGAG+AGG | 0.572655 | tig0041814:-9867 | Msa1461950:intron |
| AAGTTACAAGATCAAGCATA+GGG | 0.574925 | tig0041814:+7753 | None:intergenic |
| TTGGCATACGGTACTGACTC+AGG | 0.587032 | tig0041814:-5980 | Msa1461950:three_prime_UTR |
| ACAATGGTATCATGAAAACT+AGG | 0.588142 | tig0041814:+5916 | None:intergenic |
| GGTGCTGTATCCAAAGCTGA+TGG | 0.593433 | tig0041814:-10012 | Msa1461950:CDS |
| GCTCACTGCAGTGCCAAGGG+TGG | 0.594700 | tig0041814:+10452 | None:intergenic |
| GATTGTAAAGTACCTCTCTA+GGG | 0.598153 | tig0041814:+9855 | None:intergenic |
| TTTACAGCCCGATAAATCAA+AGG | 0.605581 | tig0041814:+5798 | None:intergenic |
| AGGGATCCCAGCATCAGCTA+GGG | 0.609353 | tig0041814:+7772 | None:intergenic |
| CATACGGTACTGACTCAGGC+AGG | 0.609391 | tig0041814:-5976 | Msa1461950:three_prime_UTR |
| TTAGCACTGGTGATCGCATG+AGG | 0.609477 | tig0041814:-9511 | Msa1461950:CDS |
| TGATCGCATGAGGAAACCAA+AGG | 0.616278 | tig0041814:-9501 | Msa1461950:CDS |
| GTTATGCAACTGGCTACGGA+AGG | 0.624056 | tig0041814:-6356 | Msa1461950:CDS |
| GATCGCATGAGGAAACCAAA+GGG | 0.624431 | tig0041814:-9500 | Msa1461950:CDS |
| AAAGCAACTTGAGTATCGAA+GGG | 0.626931 | tig0041814:-6188 | Msa1461950:CDS |
| TGTAATAGAACCTGGGAACG+GGG | 0.631568 | tig0041814:+8240 | None:intergenic |
| AACATATACATACCAAGCAG+AGG | 0.636947 | tig0041814:+7701 | None:intergenic |
| GGAAACGGCAGTACTTCCAT+GGG | 0.641941 | tig0041814:+10146 | None:intergenic |
| CAAGTTCTCCAAGCAGATGG+AGG | 0.646436 | tig0041814:-7994 | Msa1461950:intron |
| GCAGTGCCAAGGGTGGTCGG+CGG | 0.657585 | tig0041814:+10459 | None:intergenic |
| GATAAATCAAAGGAAAGTTG+GGG | 0.659887 | tig0041814:+5808 | None:intergenic |
| ACGGCAGTACTTCCATGGGT+CGG | 0.660183 | tig0041814:+10150 | None:intergenic |
| GTGCTGTATCCAAAGCTGAT+GGG | 0.661709 | tig0041814:-10011 | Msa1461950:intron |
| TATGTAGAAGACAGTGCTGG+GGG | 0.668530 | tig0041814:-7545 | Msa1461950:CDS |
| ACTGTAATAGAACCTGGGAA+CGG | 0.673585 | tig0041814:+8238 | None:intergenic |
| CTATGTAGAAGACAGTGCTG+GGG | 0.678097 | tig0041814:-7546 | Msa1461950:CDS |
| GGTTCGATGTGAATACAGCA+TGG | 0.680697 | tig0041814:-9540 | Msa1461950:CDS |
| GAGCCAACAAATGAGCGACA+AGG | 0.687086 | tig0041814:-9676 | Msa1461950:CDS |
| AAACTAGGTGACAACAACAA+TGG | 0.690637 | tig0041814:+5900 | None:intergenic |
| AGCAACAAACCTGTGCTCCG+CGG | 0.697456 | tig0041814:+10427 | None:intergenic |
| AACAAACCTGTGCTCCGCGG+CGG | 0.703853 | tig0041814:+10430 | None:intergenic |
| AAGCAACTTGAGTATCGAAG+GGG | 0.706304 | tig0041814:-6187 | Msa1461950:CDS |
| CATATACATACCAAGCAGAG+GGG | 0.742316 | tig0041814:+7703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAATTTATATATTTTCTA+TGG | - | tig0041814:6484-6503 | Msa1461950:intron | 10.0% |
| !! | TAAGTTATAATATAATACAT+TGG | - | tig0041814:6646-6665 | Msa1461950:intron | 10.0% |
| !! | AAGTTATAATATAATACATT+GGG | - | tig0041814:6647-6666 | Msa1461950:intron | 10.0% |
| !! | TACAATGATTAAAAAAAATA+AGG | + | tig0041814:8204-8223 | None:intergenic | 10.0% |
| !!! | TTGTTTCTAATTTATGATTT+CGG | - | tig0041814:5875-5894 | Msa1461950:three_prime_UTR | 15.0% |
| !! | AATTAAAAGTGAATACAATA+AGG | - | tig0041814:5982-6001 | Msa1461950:three_prime_UTR | 15.0% |
| !! | ATTAAAAGTGAATACAATAA+GGG | - | tig0041814:5983-6002 | Msa1461950:three_prime_UTR | 15.0% |
| !! | TATAGAAGATACTATAAAAA+CGG | + | tig0041814:6564-6583 | None:intergenic | 15.0% |
| !!! | ATCAATTTTCCAATTTTTTT+CGG | - | tig0041814:7793-7812 | Msa1461950:CDS | 15.0% |
| !! | AATAAAATAACAAGATGAAA+AGG | + | tig0041814:8342-8361 | None:intergenic | 15.0% |
| !! | AAAAAAAATCTGTTAATTGT+TGG | - | tig0041814:8386-8405 | Msa1461950:intron | 15.0% |
| !! | GTTTAAAAAAGTAAAACAAA+AGG | + | tig0041814:9260-9279 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAATATGTTGT+TGG | + | tig0041814:9483-9502 | None:intergenic | 15.0% |
| !!! | TTTTACTTTATTTTTGGATT+AGG | - | tig0041814:9817-9836 | Msa1461950:intron | 15.0% |
| !!! | TTTACTTTATTTTTGGATTA+GGG | - | tig0041814:9818-9837 | Msa1461950:intron | 15.0% |
| !!! | TTTTATTAGAATTCTATTGT+TGG | - | tig0041814:10280-10299 | Msa1461950:intron | 15.0% |
| !! | ATACTATATAAAATTTCAGT+AGG | - | tig0041814:10527-10546 | Msa1461950:five_prime_UTR | 15.0% |
| !! | GTTCTATTCATTTATAAAAC+AGG | + | tig0041814:5725-5744 | None:intergenic | 20.0% |
| !! | AATTGGAGAAAAGAAAAAAA+GGG | + | tig0041814:6159-6178 | None:intergenic | 20.0% |
| !! | ATATCAGAAAGAAAATGAAT+TGG | + | tig0041814:6176-6195 | None:intergenic | 20.0% |
| !! | TAGTATCTTCTATATATTTC+AGG | - | tig0041814:6570-6589 | Msa1461950:intron | 20.0% |
| !! | ACTATATCAATTAAGTATGA+AGG | + | tig0041814:6863-6882 | None:intergenic | 20.0% |
| !! | ATATATAAGAAACAAACAAG+AGG | + | tig0041814:7926-7945 | None:intergenic | 20.0% |
| !! | TGATTAAAAAAAATAAGGTC+CGG | + | tig0041814:8199-8218 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTTTGCAATGATT+TGG | - | tig0041814:8232-8251 | Msa1461950:intron | 20.0% |
| !!! | GTATTTACCTTTTTTTATAG+AGG | - | tig0041814:8958-8977 | Msa1461950:intron | 20.0% |
| !!! | TTTTGATGAACATTATTGAT+AGG | - | tig0041814:9332-9351 | Msa1461950:intron | 20.0% |
| !! | TTTGATGAACATTATTGATA+GGG | - | tig0041814:9333-9352 | Msa1461950:intron | 20.0% |
| !! | TTAGAATATCAGTCTAAATT+CGG | + | tig0041814:9530-9549 | None:intergenic | 20.0% |
| !!! | ACTATAACATATTTTGTTGA+AGG | - | tig0041814:9665-9684 | Msa1461950:intron | 20.0% |
| !!! | TTACTTTATTTTTGGATTAG+GGG | - | tig0041814:9819-9838 | Msa1461950:intron | 20.0% |
| !!! | ATTTTGTTATTTACTGTAGA+TGG | - | tig0041814:9868-9887 | Msa1461950:CDS | 20.0% |
| !! | TAAACTACCAATTGATATAT+TGG | - | tig0041814:9895-9914 | Msa1461950:CDS | 20.0% |
| !!! | ACATTTTCCAATATATCAAT+TGG | + | tig0041814:9905-9924 | None:intergenic | 20.0% |
| !! | TTGATATAGTAGTAAAAACA+TGG | - | tig0041814:10002-10021 | Msa1461950:intron | 20.0% |
| !! | GAAGTTCAATGTATGATTTT+TGG | - | tig0041814:5938-5957 | Msa1461950:three_prime_UTR | 25.0% |
| !! | TAATTTAACTTACTCGCATA+AGG | - | tig0041814:6014-6033 | Msa1461950:three_prime_UTR | 25.0% |
| !! | AATTTAACTTACTCGCATAA+GGG | - | tig0041814:6015-6034 | Msa1461950:three_prime_UTR | 25.0% |
| ! | TCAGAGAAAGAAAGAAAAAA+AGG | + | tig0041814:6052-6071 | None:intergenic | 25.0% |
| ! | ATTGGAGAAAAGAAAAAAAG+GGG | + | tig0041814:6158-6177 | None:intergenic | 25.0% |
| ! | GAATTGGAGAAAAGAAAAAA+AGG | + | tig0041814:6160-6179 | None:intergenic | 25.0% |
| ! | TAAAGAGGAGAAAAAAAAGA+TGG | + | tig0041814:6212-6231 | None:intergenic | 25.0% |
| !! | ATATATTTCAGGTGCAAAAT+AGG | - | tig0041814:6581-6600 | Msa1461950:intron | 25.0% |
| ! | TGGAAATATTAACGGTTTAT+TGG | - | tig0041814:7332-7351 | Msa1461950:intron | 25.0% |
| ! | ATTAACGGTTTATTGGAAAT+AGG | - | tig0041814:7339-7358 | Msa1461950:intron | 25.0% |
| ! | AAAAATCTACCTTATCTACA+AGG | + | tig0041814:7469-7488 | None:intergenic | 25.0% |
| !! | TTGTAGATAAGGTAGATTTT+TGG | - | tig0041814:7468-7487 | Msa1461950:intron | 25.0% |
| !! | TGTAGATAAGGTAGATTTTT+GGG | - | tig0041814:7469-7488 | Msa1461950:intron | 25.0% |
| ! | AGATAAGTTAACTAGTTACA+AGG | - | tig0041814:7536-7555 | Msa1461950:CDS | 25.0% |
| ! | GATAAGTTAACTAGTTACAA+GGG | - | tig0041814:7537-7556 | Msa1461950:CDS | 25.0% |
| ! | AGAGAAGTTAAGTAGTTTAA+AGG | - | tig0041814:7588-7607 | Msa1461950:intron | 25.0% |
| ! | GAGAAGTTAAGTAGTTTAAA+GGG | - | tig0041814:7589-7608 | Msa1461950:intron | 25.0% |
| ! | TCATTCAGAGTTTATTAGAT+TGG | - | tig0041814:7861-7880 | Msa1461950:intron | 25.0% |
| !!! | TTACAGTCTTATTTCGTATT+TGG | - | tig0041814:8057-8076 | Msa1461950:intron | 25.0% |
| !! | TTGTTGGCAATATTTAAAAC+AGG | - | tig0041814:8402-8421 | Msa1461950:intron | 25.0% |
| !! | TTGGTATGTATATGTTTTAC+TGG | - | tig0041814:8585-8604 | Msa1461950:intron | 25.0% |
| !!! | GTTTTACTGGAAATTTTAAC+TGG | - | tig0041814:8598-8617 | Msa1461950:intron | 25.0% |
| ! | GTTTATATATGTTTGTAACC+TGG | - | tig0041814:8871-8890 | Msa1461950:intron | 25.0% |
| !! | TCTAAAGATGAGAACAATTT+TGG | + | tig0041814:9073-9092 | None:intergenic | 25.0% |
| ! | AATGTTCATCAAAAGCAAAA+TGG | + | tig0041814:9294-9313 | None:intergenic | 25.0% |
| ! | AAAATTACAATGAAAGAGAC+TGG | + | tig0041814:9711-9730 | None:intergenic | 25.0% |
| !!! | TGTGGCTTTTACTTTATTTT+TGG | - | tig0041814:9811-9830 | Msa1461950:intron | 25.0% |
| ! | TGTCAATCAATGAAGAAATT+AGG | + | tig0041814:10053-10072 | None:intergenic | 25.0% |
| ! | TAACATGAAATAAACCAACA+TGG | + | tig0041814:10160-10179 | None:intergenic | 25.0% |
| ! | CAAAATTCTAATTCAAGCTT+TGG | + | tig0041814:10451-10470 | None:intergenic | 25.0% |
| AAAAGAAAAAAAGGGGGAAA+CGG | + | tig0041814:6151-6170 | None:intergenic | 30.0% | |
| TTGGAGAAAAGAAAAAAAGG+GGG | + | tig0041814:6157-6176 | None:intergenic | 30.0% | |
| CACAGTGAAAAAGAAGTTTA+AGG | + | tig0041814:6346-6365 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCTTTCCATGTCT+AGG | - | tig0041814:6718-6737 | Msa1461950:intron | 30.0% |
| ! | TATAGTATTGCTGTACTGAT+AGG | - | tig0041814:6877-6896 | Msa1461950:intron | 30.0% |
| AGGAATTAAACTACGATAAG+AGG | - | tig0041814:6985-7004 | Msa1461950:intron | 30.0% | |
| ATAGAGTAGCATATTAAGAG+AGG | - | tig0041814:7132-7151 | Msa1461950:intron | 30.0% | |
| AGCTTAGCTGGAAATATTAA+CGG | - | tig0041814:7324-7343 | Msa1461950:intron | 30.0% | |
| ! | GTAGATAAGGTAGATTTTTG+GGG | - | tig0041814:7470-7489 | Msa1461950:intron | 30.0% |
| TTAAAGGGATATGTACGTAT+AGG | - | tig0041814:7604-7623 | Msa1461950:intron | 30.0% | |
| AATACAACAAACACGTGTAT+TGG | + | tig0041814:7664-7683 | None:intergenic | 30.0% | |
| CTGAATGACAAACAAAATGA+GGG | + | tig0041814:7849-7868 | None:intergenic | 30.0% | |
| TCTGAATGACAAACAAAATG+AGG | + | tig0041814:7850-7869 | None:intergenic | 30.0% | |
| TCGAATAACCAGAGAAATTT+CGG | + | tig0041814:7983-8002 | None:intergenic | 30.0% | |
| ATAAGACTGTAATAGAACCT+GGG | + | tig0041814:8049-8068 | None:intergenic | 30.0% | |
| AATAAGACTGTAATAGAACC+TGG | + | tig0041814:8050-8069 | None:intergenic | 30.0% | |
| TTGTATAAATGCTGCAACTT+TGG | - | tig0041814:8484-8503 | Msa1461950:intron | 30.0% | |
| AAGTTACAAGATCAAGCATA+GGG | + | tig0041814:8529-8548 | None:intergenic | 30.0% | |
| GAGAAAATTTACCTGAAGAA+GGG | + | tig0041814:8804-8823 | None:intergenic | 30.0% | |
| GTCAGGAAAGTAAATTAACT+TGG | - | tig0041814:8839-8858 | Msa1461950:intron | 30.0% | |
| CCTAAAGCCTCTATAAAAAA+AGG | + | tig0041814:8968-8987 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTTATAGAGGCTTT+AGG | - | tig0041814:8965-8984 | Msa1461950:intron | 30.0% |
| ! | AAGATGAGAACAATTTTGGA+AGG | + | tig0041814:9069-9088 | None:intergenic | 30.0% |
| TGCACTATAGAGGAAAAAAT+AGG | - | tig0041814:9129-9148 | Msa1461950:intron | 30.0% | |
| AAACAACCACTGGATAATAA+AGG | + | tig0041814:9368-9387 | None:intergenic | 30.0% | |
| TTTATTATCCAGTGGTTGTT+TGG | - | tig0041814:9367-9386 | Msa1461950:intron | 30.0% | |
| TCTTAAGAATGAGTCAACAA+GGG | + | tig0041814:9436-9455 | None:intergenic | 30.0% | |
| ATCTTAAGAATGAGTCAACA+AGG | + | tig0041814:9437-9456 | None:intergenic | 30.0% | |
| AAGCATATAGTTTGATTGAG+CGG | - | tig0041814:9776-9795 | Msa1461950:intron | 30.0% | |
| ATTGGAAAATGTTATGCAAC+TGG | - | tig0041814:9913-9932 | Msa1461950:intron | 30.0% | |
| !! | CATTGATTGACAGATTTTAC+TGG | - | tig0041814:10061-10080 | Msa1461950:intron | 30.0% |
| AACATGGAATGCAAACAAAA+AGG | + | tig0041814:10144-10163 | None:intergenic | 30.0% | |
| !! | TTTTTGTTTGCATTCCATGT+TGG | - | tig0041814:10143-10162 | Msa1461950:intron | 30.0% |
| AGAATTCTATTGTTGGCATA+CGG | - | tig0041814:10287-10306 | Msa1461950:intron | 30.0% | |
| ACAATGGTATCATGAAAACT+AGG | + | tig0041814:10366-10385 | None:intergenic | 30.0% | |
| ! | CATTGTTGTTATGAGTTCAA+TGG | + | tig0041814:10413-10432 | None:intergenic | 30.0% |
| GATAAATCAAAGGAAAGTTG+GGG | + | tig0041814:10474-10493 | None:intergenic | 30.0% | |
| CGATAAATCAAAGGAAAGTT+GGG | + | tig0041814:10475-10494 | None:intergenic | 30.0% | |
| ! | CCAACTTTCCTTTGATTTAT+CGG | - | tig0041814:10473-10492 | Msa1461950:five_prime_UTR | 30.0% |
| ! | CAACTTTCCTTTGATTTATC+GGG | - | tig0041814:10474-10493 | Msa1461950:five_prime_UTR | 30.0% |
| !!! | AGAATCTTGCGCAAGTTTTT+TGG | + | tig0041814:5766-5785 | None:intergenic | 35.0% |
| ! | GAAGTTTAAGGTGAAATGCA+TGG | + | tig0041814:6334-6353 | None:intergenic | 35.0% |
| ATAAACAGCAGCAATGACTT+TGG | + | tig0041814:6402-6421 | None:intergenic | 35.0% | |
| ! | AAAGTCATTGCTGCTGTTTA+TGG | - | tig0041814:6401-6420 | Msa1461950:intron | 35.0% |
| ! | GATTGTAAAGTACCTCTCTA+GGG | + | tig0041814:6427-6446 | None:intergenic | 35.0% |
| ! | TGATTGTAAAGTACCTCTCT+AGG | + | tig0041814:6428-6447 | None:intergenic | 35.0% |
| AAGTATGAAGGATCAAGATC+AGG | + | tig0041814:6851-6870 | None:intergenic | 35.0% | |
| TCGTGATGAAATGTAAATGC+TGG | - | tig0041814:7088-7107 | Msa1461950:intron | 35.0% | |
| TAGCATATTAAGAGAGGCAA+TGG | - | tig0041814:7138-7157 | Msa1461950:intron | 35.0% | |
| TAGAAAAGTCTCTAGTTGAG+CGG | - | tig0041814:7289-7308 | Msa1461950:intron | 35.0% | |
| AAAGTTCCTTCAAAATCAGC+TGG | + | tig0041814:7403-7422 | None:intergenic | 35.0% | |
| ! | AGGAACTTTTAGCAGAAACA+TGG | - | tig0041814:7414-7433 | Msa1461950:intron | 35.0% |
| ATACACGAACCTTGTAGATA+AGG | - | tig0041814:7457-7476 | Msa1461950:intron | 35.0% | |
| ATGTACGTATAGGAGACATA+AGG | - | tig0041814:7614-7633 | Msa1461950:intron | 35.0% | |
| !! | CGTGTTTGTTGTATTGTGAA+AGG | - | tig0041814:7669-7688 | Msa1461950:intron | 35.0% |
| GTTGTATTGTGAAAGGACAA+AGG | - | tig0041814:7676-7695 | Msa1461950:intron | 35.0% | |
| GAGATAAGATTCGCTTCTAA+TGG | + | tig0041814:7720-7739 | None:intergenic | 35.0% | |
| !! | CATTGAGCACCGAAAAAAAT+TGG | + | tig0041814:7805-7824 | None:intergenic | 35.0% |
| ! | TTAGATTGGTTGTTCTTGCA+AGG | - | tig0041814:7875-7894 | Msa1461950:intron | 35.0% |
| ! | TTGAAATTTGCTCATGCTAC+AGG | - | tig0041814:7950-7969 | Msa1461950:intron | 35.0% |
| TGTCAATATGCATTCTTCCA+TGG | + | tig0041814:8010-8029 | None:intergenic | 35.0% | |
| TTTGTCGAATCTCTATGACA+TGG | + | tig0041814:8084-8103 | None:intergenic | 35.0% | |
| ! | GATTCGACAAAGTTTTACGT+TGG | - | tig0041814:8093-8112 | Msa1461950:intron | 35.0% |
| TTAGGTTCTATTACAGTCTC+CGG | - | tig0041814:8177-8196 | Msa1461950:intron | 35.0% | |
| ! | GTTCATAACATGCCTTTTGT+AGG | - | tig0041814:8449-8468 | Msa1461950:intron | 35.0% |
| GAAGTTACAAGATCAAGCAT+AGG | + | tig0041814:8530-8549 | None:intergenic | 35.0% | |
| ACATATACATACCAAGCAGA+GGG | + | tig0041814:8580-8599 | None:intergenic | 35.0% | |
| AACATATACATACCAAGCAG+AGG | + | tig0041814:8581-8600 | None:intergenic | 35.0% | |
| ACTTTCGATTTAGTACTGCA+TGG | - | tig0041814:8662-8681 | Msa1461950:intron | 35.0% | |
| TGAAAGTTGCTGAATGAGTA+TGG | - | tig0041814:8699-8718 | Msa1461950:intron | 35.0% | |
| AGAATTCCTACAGTTACATC+AGG | + | tig0041814:8761-8780 | None:intergenic | 35.0% | |
| ! | AGGGTCACTTTATCTAACTT+TGG | + | tig0041814:8785-8804 | None:intergenic | 35.0% |
| GGAGAAAATTTACCTGAAGA+AGG | + | tig0041814:8805-8824 | None:intergenic | 35.0% | |
| TCCATATTTGTGTTGTAGTC+AGG | - | tig0041814:8822-8841 | Msa1461950:intron | 35.0% | |
| TCCTGACTACAACACAAATA+TGG | + | tig0041814:8826-8845 | None:intergenic | 35.0% | |
| GTTTATTATGTCCTTACTGC+AGG | - | tig0041814:8936-8955 | Msa1461950:intron | 35.0% | |
| AAAGGTAAATACCTGCAGTA+AGG | + | tig0041814:8950-8969 | None:intergenic | 35.0% | |
| !! | TGAGAACAATTTTGGAAGGA+GGG | + | tig0041814:9065-9084 | None:intergenic | 35.0% |
| !! | ATGAGAACAATTTTGGAAGG+AGG | + | tig0041814:9066-9085 | None:intergenic | 35.0% |
| AGGAGTCAAATCAATACTCT+AGG | + | tig0041814:9096-9115 | None:intergenic | 35.0% | |
| ATAGTCCTGTTAGAAAGTCA+AGG | - | tig0041814:9156-9175 | Msa1461950:intron | 35.0% | |
| ATAACTCCATAATACCCCTA+TGG | - | tig0041814:9202-9221 | Msa1461950:intron | 35.0% | |
| AAAGTAAAACAAAAGGTCCC+CGG | + | tig0041814:9253-9272 | None:intergenic | 35.0% | |
| GTTCATCAAAAGCAAAATGG+AGG | + | tig0041814:9291-9310 | None:intergenic | 35.0% | |
| CTTGAACCTTTATTATCCAG+TGG | - | tig0041814:9359-9378 | Msa1461950:intron | 35.0% | |
| AGTTTACATCAGCTAATGCT+CGG | - | tig0041814:9390-9409 | Msa1461950:intron | 35.0% | |
| AATATACAAAGCCGCTATAG+CGG | - | tig0041814:9558-9577 | Msa1461950:intron | 35.0% | |
| TCTTGCATACAAACTAGTTG+CGG | - | tig0041814:9732-9751 | Msa1461950:intron | 35.0% | |
| CGGTGTTTCATAACTTAGAA+TGG | - | tig0041814:9752-9771 | Msa1461950:intron | 35.0% | |
| AAATGTTATGCAACTGGCTA+CGG | - | tig0041814:9919-9938 | Msa1461950:intron | 35.0% | |
| !! | AAAGCAACTTGAGTATCGAA+GGG | - | tig0041814:10091-10110 | Msa1461950:intron | 35.0% |
| ATACATATGACCTGATGCTA+TGG | - | tig0041814:10179-10198 | Msa1461950:CDS | 35.0% | |
| AAAATAAGAACCTGCAGTTC+AGG | + | tig0041814:10231-10250 | None:intergenic | 35.0% | |
| AAACTAGGTGACAACAACAA+TGG | + | tig0041814:10382-10401 | None:intergenic | 35.0% | |
| TCAATGGTATCCTGAAAACT+AGG | + | tig0041814:10397-10416 | None:intergenic | 35.0% | |
| CCGATAAATCAAAGGAAAGT+TGG | + | tig0041814:10476-10495 | None:intergenic | 35.0% | |
| TTTACAGCCCGATAAATCAA+AGG | + | tig0041814:10484-10503 | None:intergenic | 35.0% | |
| TGAATAGAACGACAGCGATT+TGG | - | tig0041814:5735-5754 | Msa1461950:three_prime_UTR | 40.0% | |
| !!! | TTTTTGGTTTCATGCTCGCA+TGG | - | tig0041814:5954-5973 | Msa1461950:three_prime_UTR | 40.0% |
| TGAAGCAAAGAACAGAGAGA+TGG | - | tig0041814:6069-6088 | Msa1461950:intron | 40.0% | |
| ! | GCATCTAGGATTGCATAAAG+AGG | + | tig0041814:6227-6246 | None:intergenic | 40.0% |
| AAGTATCTACCCATCAGCTT+TGG | + | tig0041814:6280-6299 | None:intergenic | 40.0% | |
| !! | AGCTCTGCAATTTTCGAGAT+GGG | - | tig0041814:6371-6390 | Msa1461950:CDS | 40.0% |
| ATTCACATCGAACCTAGACA+TGG | + | tig0041814:6733-6752 | None:intergenic | 40.0% | |
| !! | AGCATGGCTAATTTTAGCAC+TGG | - | tig0041814:6755-6774 | Msa1461950:intron | 40.0% |
| CAAGATCAGGCAAAAAGACT+GGG | + | tig0041814:6838-6857 | None:intergenic | 40.0% | |
| TCAAGATCAGGCAAAAAGAC+TGG | + | tig0041814:6839-6858 | None:intergenic | 40.0% | |
| ! | TTCCATCTTTTTGCACACGT+AGG | - | tig0041814:6965-6984 | Msa1461950:intron | 40.0% |
| TTCCTACGTGTGCAAAAAGA+TGG | + | tig0041814:6970-6989 | None:intergenic | 40.0% | |
| ! | ATTACGTGTTCCTTTTCTGC+TGG | - | tig0041814:7040-7059 | Msa1461950:intron | 40.0% |
| ! | TTACGTGTTCCTTTTCTGCT+GGG | - | tig0041814:7041-7060 | Msa1461950:intron | 40.0% |
| ACAAAATACCCCAGCAGAAA+AGG | + | tig0041814:7053-7072 | None:intergenic | 40.0% | |
| !! | TTCTGCTGGGGTATTTTGTA+AGG | - | tig0041814:7054-7073 | Msa1461950:intron | 40.0% |
| ! | ACGTAAAGCCTTATCTGTCA+AGG | - | tig0041814:7182-7201 | Msa1461950:intron | 40.0% |
| AGTTGGATCCTTGACAGATA+AGG | + | tig0041814:7193-7212 | None:intergenic | 40.0% | |
| CTCAATAACATGAGCTTAGC+TGG | - | tig0041814:7312-7331 | Msa1461950:intron | 40.0% | |
| CGGTTTATTGGAAATAGGCA+TGG | - | tig0041814:7344-7363 | Msa1461950:intron | 40.0% | |
| ! | TGAATTCTGAGAACCTTACC+AGG | - | tig0041814:7375-7394 | Msa1461950:intron | 40.0% |
| ! | GAATTCTGAGAACCTTACCA+GGG | - | tig0041814:7376-7395 | Msa1461950:intron | 40.0% |
| !! | TAAGGTAGATTTTTGGGGAG+TGG | - | tig0041814:7475-7494 | Msa1461950:intron | 40.0% |
| !! | TTTTGGGGAGTGGTATTGTT+AGG | - | tig0041814:7485-7504 | Msa1461950:intron | 40.0% |
| ACGTATAGGAGACATAAGGA+TGG | - | tig0041814:7618-7637 | Msa1461950:intron | 40.0% | |
| CGTATAGGAGACATAAGGAT+GGG | - | tig0041814:7619-7638 | Msa1461950:intron | 40.0% | |
| GAGATCAACCGAAATTTCTC+TGG | - | tig0041814:7972-7991 | Msa1461950:intron | 40.0% | |
| TCTGGTTATTCGACAAACCA+TGG | - | tig0041814:7990-8009 | Msa1461950:intron | 40.0% | |
| ACTGTAATAGAACCTGGGAA+CGG | + | tig0041814:8044-8063 | None:intergenic | 40.0% | |
| AAAATGGAGAGGGTTGTGTT+AGG | + | tig0041814:8128-8147 | None:intergenic | 40.0% | |
| AATAGAACCTAATCCTGCCA+AGG | + | tig0041814:8169-8188 | None:intergenic | 40.0% | |
| ATGAATTACCTCCATCTGCT+TGG | + | tig0041814:8296-8315 | None:intergenic | 40.0% | |
| AGGTAATTCATGCCTGATAG+TGG | - | tig0041814:8305-8324 | Msa1461950:CDS | 40.0% | |
| GGTAATTCATGCCTGATAGT+GGG | - | tig0041814:8306-8325 | Msa1461950:CDS | 40.0% | |
| ! | ACATGCCTTTTGTAGGAACT+AGG | - | tig0041814:8456-8475 | Msa1461950:intron | 40.0% |
| CATATACATACCAAGCAGAG+GGG | + | tig0041814:8579-8598 | None:intergenic | 40.0% | |
| AACTATGTAGAAGACAGTGC+TGG | - | tig0041814:8731-8750 | Msa1461950:intron | 40.0% | |
| ACTATGTAGAAGACAGTGCT+GGG | - | tig0041814:8732-8751 | Msa1461950:intron | 40.0% | |
| AGATAAAGTGACCCTTCTTC+AGG | - | tig0041814:8790-8809 | Msa1461950:intron | 40.0% | |
| TATGTTTGTAACCTGGTCCT+AGG | - | tig0041814:8878-8897 | Msa1461950:intron | 40.0% | |
| CACTACACAATCCATAACCT+AGG | + | tig0041814:8898-8917 | None:intergenic | 40.0% | |
| GGCAATTAGCAGTCACATAA+AGG | - | tig0041814:9023-9042 | Msa1461950:intron | 40.0% | |
| TAGTGCAGTTCTCACTTCAT+AGG | + | tig0041814:9116-9135 | None:intergenic | 40.0% | |
| AAGTGAGAACTGCACTATAG+AGG | - | tig0041814:9119-9138 | Msa1461950:intron | 40.0% | |
| GTATGCCTTGACTTTCTAAC+AGG | + | tig0041814:9164-9183 | None:intergenic | 40.0% | |
| !! | GCATTTCCATAGGGGTATTA+TGG | + | tig0041814:9211-9230 | None:intergenic | 40.0% |
| CAAAAGCAAAATGGAGGTCT+AGG | + | tig0041814:9285-9304 | None:intergenic | 40.0% | |
| TGTAAACTCCAAACAACCAC+TGG | + | tig0041814:9378-9397 | None:intergenic | 40.0% | |
| !! | CAAAGCAACTTGAGTATCGA+AGG | - | tig0041814:10090-10109 | Msa1461950:intron | 40.0% |
| !! | AAGCAACTTGAGTATCGAAG+GGG | - | tig0041814:10092-10111 | Msa1461950:intron | 40.0% |
| TCGTATATTTCCTGAACTGC+AGG | - | tig0041814:10218-10237 | Msa1461950:intron | 40.0% | |
| !! | GTTGTTGTCACCTAGTTTTC+AGG | - | tig0041814:10384-10403 | Msa1461950:intron | 40.0% |
| TGCTCGAATTTGTCGCATCT+AGG | + | tig0041814:6241-6260 | None:intergenic | 45.0% | |
| CGACAAATTCGAGCAGAGAT+TGG | - | tig0041814:6246-6265 | Msa1461950:intron | 45.0% | |
| GTGCTGTATCCAAAGCTGAT+GGG | - | tig0041814:6268-6287 | Msa1461950:intron | 45.0% | |
| CATCTCGAAAATTGCAGAGC+TGG | + | tig0041814:6372-6391 | None:intergenic | 45.0% | |
| !! | CAGCTCTGCAATTTTCGAGA+TGG | - | tig0041814:6370-6389 | Msa1461950:CDS | 45.0% |
| GGTTCGATGTGAATACAGCA+TGG | - | tig0041814:6739-6758 | Msa1461950:intron | 45.0% | |
| TGATCGCATGAGGAAACCAA+AGG | - | tig0041814:6778-6797 | Msa1461950:intron | 45.0% | |
| GATCGCATGAGGAAACCAAA+GGG | - | tig0041814:6779-6798 | Msa1461950:intron | 45.0% | |
| !! | CGATAAGAGGTGTCTGAAGT+AGG | - | tig0041814:6998-7017 | Msa1461950:intron | 45.0% |
| ! | TACGTGTTCCTTTTCTGCTG+GGG | - | tig0041814:7042-7061 | Msa1461950:intron | 45.0% |
| !! | CTGGGGTATTTTGTAAGGCT+TGG | - | tig0041814:7059-7078 | Msa1461950:intron | 45.0% |
| GATCCAACTCCAAAAAACCC+TGG | - | tig0041814:7204-7223 | Msa1461950:intron | 45.0% | |
| !!! | TTGCCAGGGTTTTTTGGAGT+TGG | + | tig0041814:7210-7229 | None:intergenic | 45.0% |
| !!! | CTTTGGTTGCCAGGGTTTTT+TGG | + | tig0041814:7216-7235 | None:intergenic | 45.0% |
| AAGCAAGGTTAGCAGCACTT+TGG | + | tig0041814:7233-7252 | None:intergenic | 45.0% | |
| TGCTAACCTTGCTTGTGTGA+CGG | - | tig0041814:7239-7258 | Msa1461950:intron | 45.0% | |
| AATAACCCGTCACACAAGCA+AGG | + | tig0041814:7248-7267 | None:intergenic | 45.0% | |
| !! | GCTTGTGTGACGGGTTATTA+TGG | - | tig0041814:7249-7268 | Msa1461950:intron | 45.0% |
| ! | CTTTTAGCAGAAACATGGCG+AGG | - | tig0041814:7419-7438 | Msa1461950:intron | 45.0% |
| AGGAGACATAAGGATGGGAA+AGG | - | tig0041814:7624-7643 | Msa1461950:intron | 45.0% | |
| GGAGACATAAGGATGGGAAA+GGG | - | tig0041814:7625-7644 | Msa1461950:intron | 45.0% | |
| ACATAAGGATGGGAAAGGGA+TGG | - | tig0041814:7629-7648 | Msa1461950:intron | 45.0% | |
| CATAAGGATGGGAAAGGGAT+GGG | - | tig0041814:7630-7649 | Msa1461950:intron | 45.0% | |
| TTGCAAGGTTCCATAACCCT+TGG | - | tig0041814:7890-7909 | Msa1461950:intron | 45.0% | |
| TGTAATAGAACCTGGGAACG+GGG | + | tig0041814:8042-8061 | None:intergenic | 45.0% | |
| CTGTAATAGAACCTGGGAAC+GGG | + | tig0041814:8043-8062 | None:intergenic | 45.0% | |
| !! | AAGTTTTACGTTGGCTGTCG+AGG | - | tig0041814:8102-8121 | Msa1461950:intron | 45.0% |
| ! | ACAACCCTCTCCATTTTACC+CGG | - | tig0041814:8131-8150 | Msa1461950:intron | 45.0% |
| GATCACAAGATCCCACTATC+AGG | + | tig0041814:8320-8339 | None:intergenic | 45.0% | |
| GCAGACCTAGTTCCTACAAA+AGG | + | tig0041814:8464-8483 | None:intergenic | 45.0% | |
| CTTGTAACTTCCTGTAGTGC+TGG | - | tig0041814:8539-8558 | Msa1461950:intron | 45.0% | |
| ! | ATTGAGGTATCCAGCACTAC+AGG | + | tig0041814:8552-8571 | None:intergenic | 45.0% |
| CTATGTAGAAGACAGTGCTG+GGG | - | tig0041814:8733-8752 | Msa1461950:intron | 45.0% | |
| ! | TATGTAGAAGACAGTGCTGG+GGG | - | tig0041814:8734-8753 | Msa1461950:intron | 45.0% |
| TGTAACCTGGTCCTAGGTTA+TGG | - | tig0041814:8884-8903 | Msa1461950:intron | 45.0% | |
| ACAATCCATAACCTAGGACC+AGG | + | tig0041814:8892-8911 | None:intergenic | 45.0% | |
| TGACAGAGAGCAAGAGAGAT+AGG | + | tig0041814:9001-9020 | None:intergenic | 45.0% | |
| TCTCTCTTGCTCTCTGTCAT+TGG | - | tig0041814:9002-9021 | Msa1461950:intron | 45.0% | |
| !! | ACAATTTTGGAAGGAGGGAC+AGG | + | tig0041814:9060-9079 | None:intergenic | 45.0% |
| !! | GCACACTCTGAAGTCAATAG+AGG | + | tig0041814:9584-9603 | None:intergenic | 45.0% |
| CATATGACCTGATGCTATGG+TGG | - | tig0041814:10182-10201 | Msa1461950:CDS | 45.0% | |
| ACTCAGGCAGGAAAAAGTAG+AGG | - | tig0041814:10315-10334 | Msa1461950:intron | 45.0% | |
| !!! | TAAATTTATATATTTTCTAT+GGG | - | tig0041814:6485-6504 | Msa1461950:intron | 5.0% |
| !!! | TTTTATTTTAATAATGATAT+AGG | + | tig0041814:7742-7761 | None:intergenic | 5.0% |
| CATCAGAGCGAAGTCCTTCT+GGG | + | tig0041814:6105-6124 | None:intergenic | 50.0% | |
| GGAAACGGCAGTACTTCCAT+GGG | + | tig0041814:6136-6155 | None:intergenic | 50.0% | |
| ! | GGTGCTGTATCCAAAGCTGA+TGG | - | tig0041814:6267-6286 | Msa1461950:intron | 50.0% |
| ! | TGCTGTTTATGGCCCTAGAG+AGG | - | tig0041814:6412-6431 | Msa1461950:intron | 50.0% |
| GAGCCAACAAATGAGCGACA+AGG | - | tig0041814:6603-6622 | Msa1461950:intron | 50.0% | |
| ! | GAGCCTTGTCGCTCATTTGT+TGG | + | tig0041814:6609-6628 | None:intergenic | 50.0% |
| ACAAATGAGCGACAAGGCTC+TGG | - | tig0041814:6609-6628 | Msa1461950:intron | 50.0% | |
| !! | TTAGCACTGGTGATCGCATG+AGG | - | tig0041814:6768-6787 | Msa1461950:intron | 50.0% |
| AGAACTAACCTGTCGCCCTT+TGG | + | tig0041814:6797-6816 | None:intergenic | 50.0% | |
| !! | AGAGGTGTCTGAAGTAGGTG+TGG | - | tig0041814:7003-7022 | Msa1461950:intron | 50.0% |
| TAGCAGCACTTTGGTTGCCA+GGG | + | tig0041814:7224-7243 | None:intergenic | 50.0% | |
| TTAGCAGCACTTTGGTTGCC+AGG | + | tig0041814:7225-7244 | None:intergenic | 50.0% | |
| GCTAACCTTGCTTGTGTGAC+GGG | - | tig0041814:7240-7259 | Msa1461950:intron | 50.0% | |
| AAATCAGCTGGTCCCTGGTA+AGG | + | tig0041814:7391-7410 | None:intergenic | 50.0% | |
| CTTCAAAATCAGCTGGTCCC+TGG | + | tig0041814:7396-7415 | None:intergenic | 50.0% | |
| !! | CAGGGACCAGCTGATTTTGA+AGG | - | tig0041814:7394-7413 | Msa1461950:intron | 50.0% |
| ATGGCGAGGAGATGATCTGT+TGG | - | tig0041814:7433-7452 | Msa1461950:intron | 50.0% | |
| AGGTTCCATAACCCTTGGCA+TGG | - | tig0041814:7895-7914 | Msa1461950:intron | 50.0% | |
| GGTTCCATAACCCTTGGCAT+GGG | - | tig0041814:7896-7915 | Msa1461950:intron | 50.0% | |
| TTGTCCCATGCCAAGGGTTA+TGG | + | tig0041814:7903-7922 | None:intergenic | 50.0% | |
| AAGAGGTTGTCCCATGCCAA+GGG | + | tig0041814:7909-7928 | None:intergenic | 50.0% | |
| ACATTTAATGCCCCGTTCCC+AGG | - | tig0041814:8029-8048 | Msa1461950:intron | 50.0% | |
| ! | CAACCCTCTCCATTTTACCC+GGG | - | tig0041814:8132-8151 | Msa1461950:intron | 50.0% |
| AAGCCCGGGTAAAATGGAGA+GGG | + | tig0041814:8138-8157 | None:intergenic | 50.0% | |
| ! | TCTCCATTTTACCCGGGCTT+GGG | - | tig0041814:8138-8157 | Msa1461950:intron | 50.0% |
| GTCCAAGTTCTCCAAGCAGA+TGG | - | tig0041814:8282-8301 | Msa1461950:CDS | 50.0% | |
| CTCCATCTGCTTGGAGAACT+TGG | + | tig0041814:8287-8306 | None:intergenic | 50.0% | |
| CAAGTTCTCCAAGCAGATGG+AGG | - | tig0041814:8285-8304 | Msa1461950:CDS | 50.0% | |
| TGAGGGACGCATTTCCATAG+GGG | + | tig0041814:9219-9238 | None:intergenic | 50.0% | |
| GTGAGGGACGCATTTCCATA+GGG | + | tig0041814:9220-9239 | None:intergenic | 50.0% | |
| AGTGAGGGACGCATTTCCAT+AGG | + | tig0041814:9221-9240 | None:intergenic | 50.0% | |
| GTCAATAGAGGCCGCTATAG+CGG | + | tig0041814:9572-9591 | None:intergenic | 50.0% | |
| TTGATTGAGCGGCGTTCAGT+TGG | - | tig0041814:9787-9806 | Msa1461950:intron | 50.0% | |
| TGATTGAGCGGCGTTCAGTT+GGG | - | tig0041814:9788-9807 | Msa1461950:intron | 50.0% | |
| GTTATGCAACTGGCTACGGA+AGG | - | tig0041814:9923-9942 | Msa1461950:intron | 50.0% | |
| GCAACAACCACCATAGCATC+AGG | + | tig0041814:10192-10211 | None:intergenic | 50.0% | |
| GCTATGGTGGTTGTTGCTGA+TGG | - | tig0041814:10195-10214 | Msa1461950:exon | 50.0% | |
| !! | TTGGCATACGGTACTGACTC+AGG | - | tig0041814:10299-10318 | Msa1461950:intron | 50.0% |
| AGCAACAAACCTGTGCTCCG+CGG | + | tig0041814:5855-5874 | None:intergenic | 55.0% | |
| ATGGAGTACGTCAGCCCAGA+AGG | - | tig0041814:6088-6107 | Msa1461950:intron | 55.0% | |
| CCATCAGAGCGAAGTCCTTC+TGG | + | tig0041814:6106-6125 | None:intergenic | 55.0% | |
| CCAGAAGGACTTCGCTCTGA+TGG | - | tig0041814:6103-6122 | Msa1461950:intron | 55.0% | |
| ACGGCAGTACTTCCATGGGT+CGG | + | tig0041814:6132-6151 | None:intergenic | 55.0% | |
| GGGAAACGGCAGTACTTCCA+TGG | + | tig0041814:6137-6156 | None:intergenic | 55.0% | |
| TGAGGAAACCAAAGGGCGAC+AGG | - | tig0041814:6786-6805 | Msa1461950:intron | 55.0% | |
| GATGGGAAAGGGATGGGAGA+GGG | - | tig0041814:7636-7655 | Msa1461950:intron | 55.0% | |
| CAAGAGGTTGTCCCATGCCA+AGG | + | tig0041814:7910-7929 | None:intergenic | 55.0% | |
| CAAGCCCGGGTAAAATGGAG+AGG | + | tig0041814:8139-8158 | None:intergenic | 55.0% | |
| ! | CTCTCCATTTTACCCGGGCT+TGG | - | tig0041814:8137-8156 | Msa1461950:intron | 55.0% |
| ! | ATTTTACCCGGGCTTGGGAC+CGG | - | tig0041814:8143-8162 | Msa1461950:intron | 55.0% |
| GAACCTAATCCTGCCAAGGC+CGG | + | tig0041814:8165-8184 | None:intergenic | 55.0% | |
| ACTTTGGCCCTAGCTGATGC+TGG | - | tig0041814:8500-8519 | Msa1461950:intron | 55.0% | |
| CTTTGGCCCTAGCTGATGCT+GGG | - | tig0041814:8501-8520 | Msa1461950:intron | 55.0% | |
| AGGGATCCCAGCATCAGCTA+GGG | + | tig0041814:8510-8529 | None:intergenic | 55.0% | |
| TAGGGATCCCAGCATCAGCT+AGG | + | tig0041814:8511-8530 | None:intergenic | 55.0% | |
| !! | CAAGCAGAGGGGTGCTATTG+AGG | + | tig0041814:8568-8587 | None:intergenic | 55.0% |
| CTCAATAGCACCCCTCTGCT+TGG | - | tig0041814:8566-8585 | Msa1461950:intron | 55.0% | |
| GGGGGTCCTGATGTAACTGT+AGG | - | tig0041814:8752-8771 | Msa1461950:intron | 55.0% | |
| ACAAAAGGTCCCCGGAAGTG+CGG | + | tig0041814:9245-9264 | None:intergenic | 55.0% | |
| !! | CATACGGTACTGACTCAGGC+AGG | - | tig0041814:10303-10322 | Msa1461950:intron | 55.0% |
| ACTGCAGTGCCAAGGGTGGT+CGG | + | tig0041814:5826-5845 | None:intergenic | 60.0% | |
| AACAAACCTGTGCTCCGCGG+CGG | + | tig0041814:5852-5871 | None:intergenic | 60.0% | |
| GGATGGGAAAGGGATGGGAG+AGG | - | tig0041814:7635-7654 | Msa1461950:intron | 60.0% | |
| GGTCCCAAGCCCGGGTAAAA+TGG | + | tig0041814:8144-8163 | None:intergenic | 60.0% | |
| GTCCCTCACTTCCGCACTTC+CGG | - | tig0041814:9231-9250 | Msa1461950:intron | 60.0% | |
| TCCCTCACTTCCGCACTTCC+GGG | - | tig0041814:9232-9251 | Msa1461950:intron | 60.0% | |
| !!! | GGTCGGCGGCGCTTTTTTGG+TGG | + | tig0041814:5809-5828 | None:intergenic | 65.0% |
| !!! | GGTGGTCGGCGGCGCTTTTT+TGG | + | tig0041814:5812-5831 | None:intergenic | 65.0% |
| GCTCACTGCAGTGCCAAGGG+TGG | + | tig0041814:5830-5849 | None:intergenic | 65.0% | |
| GCGGCTCACTGCAGTGCCAA+GGG | + | tig0041814:5833-5852 | None:intergenic | 65.0% | |
| CTCTGATGGTCGCCGACCCA+TGG | - | tig0041814:6117-6136 | Msa1461950:intron | 65.0% | |
| GGACCGGCCTTGGCAGGATT+AGG | - | tig0041814:8159-8178 | Msa1461950:intron | 65.0% | |
| ! | CCCCGGAAGTGCGGAAGTGA+GGG | + | tig0041814:9236-9255 | None:intergenic | 65.0% |
| CCCTCACTTCCGCACTTCCG+GGG | - | tig0041814:9233-9252 | Msa1461950:intron | 65.0% | |
| ! | TCCCCGGAAGTGCGGAAGTG+AGG | + | tig0041814:9237-9256 | None:intergenic | 65.0% |
| GAGCGGCGTTCAGTTGGGTG+TGG | - | tig0041814:9793-9812 | Msa1461950:intron | 65.0% | |
| !! | AAAGCGCCGCCGACCACCCT+TGG | - | tig0041814:5814-5833 | Msa1461950:three_prime_UTR | 70.0% |
| GCAGTGCCAAGGGTGGTCGG+CGG | + | tig0041814:5823-5842 | None:intergenic | 70.0% | |
| GGCGGCTCACTGCAGTGCCA+AGG | + | tig0041814:5834-5853 | None:intergenic | 70.0% | |
| GGCACTGCAGTGAGCCGCCG+CGG | - | tig0041814:5835-5854 | Msa1461950:three_prime_UTR | 75.0% | |
| AGTGAGCCGCCGCGGAGCAC+AGG | - | tig0041814:5843-5862 | Msa1461950:three_prime_UTR | 75.0% | |
| CCAAGGCCGGTCCCAAGCCC+GGG | + | tig0041814:8152-8171 | None:intergenic | 75.0% | |
| GCCAAGGCCGGTCCCAAGCC+CGG | + | tig0041814:8153-8172 | None:intergenic | 75.0% | |
| GGCTTGGGACCGGCCTTGGC+AGG | - | tig0041814:8153-8172 | Msa1461950:intron | 75.0% | |
| ! | CCCGGGCTTGGGACCGGCCT+TGG | - | tig0041814:8149-8168 | Msa1461950:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041814 | gene | 5709 | 10592 | 5709 | ID=Msa1461950;Name=Msa1461950 |
| tig0041814 | mRNA | 5709 | 10592 | 5709 | ID=Msa1461950-mRNA-1;Parent=Msa1461950;Name=Msa1461950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=170|1|1|1|0.83|0.76|13|363|241 |
| tig0041814 | exon | 5709 | 6061 | 5709 | ID=Msa1461950-mRNA-1:exon:23431;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 6170 | 6227 | 6170 | ID=Msa1461950-mRNA-1:exon:23430;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 6325 | 6414 | 6325 | ID=Msa1461950-mRNA-1:exon:23429;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 7490 | 7575 | 7490 | ID=Msa1461950-mRNA-1:exon:23428;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 7714 | 7830 | 7714 | ID=Msa1461950-mRNA-1:exon:23427;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 7995 | 8031 | 7995 | ID=Msa1461950-mRNA-1:exon:23426;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 8251 | 8329 | 8251 | ID=Msa1461950-mRNA-1:exon:23425;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 9494 | 9561 | 9494 | ID=Msa1461950-mRNA-1:exon:23424;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 9671 | 9709 | 9671 | ID=Msa1461950-mRNA-1:exon:23423;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 9868 | 9928 | 9868 | ID=Msa1461950-mRNA-1:exon:23422;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 10012 | 10058 | 10012 | ID=Msa1461950-mRNA-1:exon:23421;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 10160 | 10227 | 10160 | ID=Msa1461950-mRNA-1:exon:23420;Parent=Msa1461950-mRNA-1 |
| tig0041814 | exon | 10437 | 10592 | 10437 | ID=Msa1461950-mRNA-1:exon:23419;Parent=Msa1461950-mRNA-1 |
| tig0041814 | five_prime_UTR | 10437 | 10592 | 10437 | ID=Msa1461950-mRNA-1:five_prime_utr;Parent=Msa1461950-mRNA-1 |
| tig0041814 | five_prime_UTR | 10214 | 10227 | 10214 | ID=Msa1461950-mRNA-1:five_prime_utr;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 10160 | 10213 | 10160 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 10012 | 10058 | 10012 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 9868 | 9928 | 9868 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 9671 | 9709 | 9671 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 9494 | 9561 | 9494 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 8251 | 8329 | 8251 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 7995 | 8031 | 7995 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 7714 | 7830 | 7714 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 7490 | 7575 | 7490 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 6325 | 6414 | 6325 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | CDS | 6180 | 6227 | 6180 | ID=Msa1461950-mRNA-1:cds;Parent=Msa1461950-mRNA-1 |
| tig0041814 | three_prime_UTR | 6170 | 6179 | 6170 | ID=Msa1461950-mRNA-1:three_prime_utr;Parent=Msa1461950-mRNA-1 |
| tig0041814 | three_prime_UTR | 5709 | 6061 | 5709 | ID=Msa1461950-mRNA-1:three_prime_utr;Parent=Msa1461950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
