AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183010 MtrunA17_Chr1g0211791 99.123 114 1 0 1 114 1 114 1.88e-78 226
Msa0183010 MtrunA17_Chr4g0014331 33.663 101 67 0 11 111 96 196 7.89e-17 72.4
Msa0183010 MtrunA17_Chr3g0081601 29.126 103 73 0 11 113 80 182 2.79e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183010 AT5G27820.1 79.825 114 23 0 1 114 1 114 4.00e-65 192
Msa0183010 AT3G20230.1 35.644 101 65 0 11 111 83 183 7.22e-19 77.8
Msa0183010 AT3G45020.3 36.937 111 58 4 16 114 4 114 3.40e-13 61.6
Msa0183010 AT3G45020.2 36.937 111 58 4 16 114 4 114 3.40e-13 61.6
Msa0183010 AT3G45020.1 36.937 111 58 4 16 114 4 114 3.40e-13 61.6
Msa0183010 AT3G45020.4 36.937 111 58 4 16 114 4 114 3.40e-13 61.6
Msa0183010 AT1G08845.1 27.184 103 75 0 11 113 82 184 2.06e-12 60.8
Msa0183010 AT1G08845.3 27.184 103 75 0 11 113 82 184 2.06e-12 60.8
Msa0183010 AT1G08845.2 27.184 103 75 0 11 113 127 229 2.80e-12 61.2

Find 65 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAGATGATTGTTGTTT+TGG 0.263030 1_4:+71802548 Msa0183010:three_prime_UTR
ATGAGCAGCTCAGGTTTAAT+TGG 0.299018 1_4:-71802441 None:intergenic
TTTCAGATATTGTGTAAGTC+TGG 0.313396 1_4:-71802013 None:intergenic
CAACATCCCGAGTAGTTTCC+AGG 0.336475 1_4:-71802152 None:intergenic
CCTTTCTCGCCGTCACAAAC+AGG 0.362328 1_4:+71800658 Msa0183010:five_prime_UTR
GATGCTAAAACACTGTTTCA+TGG 0.369815 1_4:+71802594 Msa0183010:three_prime_UTR
CTGGGAGGCCTGACTGGAGG+TGG 0.388017 1_4:-71801994 None:intergenic
CCTGTTTGTGACGGCGAGAA+AGG 0.396026 1_4:-71800658 None:intergenic
TGGTTTGCAGAGTTGCAAAT+TGG 0.397335 1_4:+71802627 Msa0183010:three_prime_UTR
AAGCGGTTATTGATTCTCTC+AGG 0.400454 1_4:+71802283 Msa0183010:CDS
GTAAGTCTGGGAGGCCTGAC+TGG 0.402204 1_4:-71802000 None:intergenic
ATGTTTGATGAGAAACTTGA+TGG 0.417163 1_4:-71802490 None:intergenic
AAATGCATCTTAAGAACATA+AGG 0.422008 1_4:-71802036 None:intergenic
TTTCTGCAAAACAGATTTCT+CGG 0.428368 1_4:+71800550 Msa0183010:five_prime_UTR
GAAAGCCTTGAGATCAAGCC+TGG 0.444737 1_4:+71802134 Msa0183010:CDS
CTCCTGTGAGCTTGCAGAAG+AGG 0.447057 1_4:-71802112 None:intergenic
ATTGATTCTCTCAGGGAAGC+TGG 0.452667 1_4:+71802291 Msa0183010:CDS
AAGAGAGAACAGAGGTATCA+TGG 0.461247 1_4:+71802252 Msa0183010:CDS
ACCTTTGATCACTCGTTCGC+AGG 0.465646 1_4:-71802388 None:intergenic
ATGGGAAGGGAGTGGCTGAC+CGG 0.468800 1_4:-71800629 None:intergenic
GTTGCTGCAGCTGCAAAGAT+TGG 0.469361 1_4:+71802171 Msa0183010:CDS
GAGAAAGGAACGGGATGGGA+AGG 0.469987 1_4:-71800643 None:intergenic
AGTTTCCAGGCTTGATCTCA+AGG 0.483054 1_4:-71802139 None:intergenic
TGCAGAGTTGCAAATTGGTA+AGG 0.490455 1_4:+71802632 Msa0183010:three_prime_UTR
TGGTTATCCCACCTCCAGTC+AGG 0.492573 1_4:+71801986 Msa0183010:CDS
TGTTTCATGGCAAGCGTAAG+TGG 0.502397 1_4:+71802607 Msa0183010:three_prime_UTR
TGTGACGGCGAGAAAGGAAC+GGG 0.503324 1_4:-71800652 None:intergenic
TTCAGATATTGTGTAAGTCT+GGG 0.506970 1_4:-71802012 None:intergenic
TGCCTCTTCTGCAAGCTCAC+AGG 0.512391 1_4:+71802110 Msa0183010:CDS
GAAGAGGCAACGGTAGCAGT+TGG 0.531232 1_4:-71802096 None:intergenic
CGGAGTGGACGTGACGGCGG+CGG 0.531524 1_4:-71800609 None:intergenic
GATCAAGCCTGGAAACTACT+CGG 0.540330 1_4:+71802145 Msa0183010:CDS
CGGCGAGAAAGGAACGGGAT+GGG 0.542349 1_4:-71800647 None:intergenic
AGCGGAACGCCTTTCGCTCA+AGG 0.547714 1_4:+71802203 Msa0183010:CDS
TGCACGAGAGAAAGAGCAGT+AGG 0.549319 1_4:-71800582 None:intergenic
CAGGAATGTCCTTGAGCGAA+AGG 0.550217 1_4:-71802212 None:intergenic
TTGCTGCAGCTGCAAAGATT+GGG 0.550997 1_4:+71802172 Msa0183010:CDS
GGAACGGGATGGGAAGGGAG+TGG 0.552945 1_4:-71800637 None:intergenic
AGAAAGGAACGGGATGGGAA+GGG 0.556403 1_4:-71800642 None:intergenic
AGCGGTTATTGATTCTCTCA+GGG 0.559363 1_4:+71802284 Msa0183010:CDS
TTCAAGTGAACAGAAACAGC+AGG 0.564698 1_4:-71802231 None:intergenic
AAGGGAGTGGCTGACCGGAG+TGG 0.568568 1_4:-71800624 None:intergenic
CGCCGCCGTCACGTCCACTC+CGG 0.571619 1_4:+71800610 Msa0183010:five_prime_UTR
TGGGAGGCCTGACTGGAGGT+GGG 0.577993 1_4:-71801993 None:intergenic
TCACTCGTTCGCAGGAGGCA+AGG 0.580899 1_4:-71802380 None:intergenic
GACTGCCACCAACTAGTGTA+CGG 0.587036 1_4:+71802669 Msa0183010:three_prime_UTR
TTGTGACGGCGAGAAAGGAA+CGG 0.588187 1_4:-71800653 None:intergenic
AGAACAGAGGTATCATGGAA+AGG 0.588862 1_4:+71802257 Msa0183010:CDS
ATCAAGCCTGGAAACTACTC+GGG 0.593151 1_4:+71802146 Msa0183010:CDS
ACGGCGAGAAAGGAACGGGA+TGG 0.594078 1_4:-71800648 None:intergenic
TCCTGCGAACGAGTGATCAA+AGG 0.598619 1_4:+71802387 Msa0183010:three_prime_UTR
AGTCTGGGAGGCCTGACTGG+AGG 0.599060 1_4:-71801997 None:intergenic
CAACGGTAGCAGTTGGAGTG+TGG 0.604975 1_4:-71802089 None:intergenic
ATGTTCGAACCTGTTTGTGA+CGG 0.615764 1_4:-71800667 None:intergenic
GCACGAGAGAAAGAGCAGTA+GGG 0.621635 1_4:-71800581 None:intergenic
AAACACCGTACACTAGTTGG+TGG 0.622289 1_4:-71802674 None:intergenic
TTTGATCACTCGTTCGCAGG+AGG 0.626527 1_4:-71802385 None:intergenic
GACCGGAGTGGACGTGACGG+CGG 0.630763 1_4:-71800612 None:intergenic
TGAGCTTGCAGAAGAGGCAA+CGG 0.638179 1_4:-71802106 None:intergenic
AGATATTGTGTAAGTCTGGG+AGG 0.649085 1_4:-71802009 None:intergenic
GTATCATGGAAAGGTAAAAG+CGG 0.664247 1_4:+71802266 Msa0183010:CDS
GCTGACCGGAGTGGACGTGA+CGG 0.677474 1_4:-71800615 None:intergenic
GCAGGAGGCAAGGTTCAACA+AGG 0.686635 1_4:-71802370 None:intergenic
AAAGATTGGGAAGCTACTAG+CGG 0.716694 1_4:+71802185 Msa0183010:CDS
TTCACTTGAAGAGAGAACAG+AGG 0.737493 1_4:+71802244 Msa0183010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGAATTGATTTAAAAA+GGG - chr1_4:71800883-71800902 None:intergenic 10.0%
!!! TTAATTGAATTGATTTAAAA+AGG - chr1_4:71800884-71800903 None:intergenic 10.0%
!!! TAATTGAATTGATTTAAAAA+GGG - chr1_4:71800883-71800902 None:intergenic 10.0%
!!! TTAATTGAATTGATTTAAAA+AGG - chr1_4:71800884-71800903 None:intergenic 10.0%
!!! AATTGAATTGATTTAAAAAG+GGG - chr1_4:71800882-71800901 None:intergenic 15.0%
!! AATATACATTTAATAACACT+TGG - chr1_4:71801163-71801182 None:intergenic 15.0%
!!! AATTGAATTGATTTAAAAAG+GGG - chr1_4:71800882-71800901 None:intergenic 15.0%
!! AATATACATTTAATAACACT+TGG - chr1_4:71801163-71801182 None:intergenic 15.0%
!!! CAGTATATTTTTAACTGTTT+TGG + chr1_4:71801117-71801136 Msa0183010:intron 20.0%
!!! ACTTCTTTATTCTTTTTAAG+GGG - chr1_4:71801472-71801491 None:intergenic 20.0%
!!! CACTTCTTTATTCTTTTTAA+GGG - chr1_4:71801473-71801492 None:intergenic 20.0%
!! ATAAAATAGTGATACCAAAA+TGG - chr1_4:71801709-71801728 None:intergenic 20.0%
!!! TCATTTAATGTTTTAACAAC+AGG - chr1_4:71801856-71801875 None:intergenic 20.0%
!! TTAAATGAACTTGTAATTTG+TGG + chr1_4:71801868-71801887 Msa0183010:intron 20.0%
!!! AGGTTTTGTATTATTTTTGT+AGG + chr1_4:71802407-71802426 Msa0183010:three_prime_UTR 20.0%
!!! ATATTAGATGATTGTTGTTT+TGG + chr1_4:71802548-71802567 Msa0183010:three_prime_UTR 20.0%
!!! CAGTATATTTTTAACTGTTT+TGG + chr1_4:71801117-71801136 Msa0183010:intron 20.0%
!!! ACTTCTTTATTCTTTTTAAG+GGG - chr1_4:71801472-71801491 None:intergenic 20.0%
!!! CACTTCTTTATTCTTTTTAA+GGG - chr1_4:71801473-71801492 None:intergenic 20.0%
!! ATAAAATAGTGATACCAAAA+TGG - chr1_4:71801709-71801728 None:intergenic 20.0%
!!! TCATTTAATGTTTTAACAAC+AGG - chr1_4:71801856-71801875 None:intergenic 20.0%
!! TTAAATGAACTTGTAATTTG+TGG + chr1_4:71801868-71801887 Msa0183010:intron 20.0%
!!! AGGTTTTGTATTATTTTTGT+AGG + chr1_4:71802407-71802426 Msa0183010:three_prime_UTR 20.0%
!!! ATATTAGATGATTGTTGTTT+TGG + chr1_4:71802548-71802567 Msa0183010:three_prime_UTR 20.0%
!!! TTATTTTTATTGCTGTGACT+TGG + chr1_4:71800801-71800820 Msa0183010:intron 25.0%
! ATATCACAGTAAAATATGAG+AGG - chr1_4:71800942-71800961 None:intergenic 25.0%
! CAGTTAAAAATATACTGAAC+TGG - chr1_4:71801114-71801133 None:intergenic 25.0%
!! TCTAAACATGATTAGTTCAA+GGG - chr1_4:71801292-71801311 None:intergenic 25.0%
!! TTCTAAACATGATTAGTTCA+AGG - chr1_4:71801293-71801312 None:intergenic 25.0%
!!! ATGAGATTGACTTTCATTTT+TGG - chr1_4:71801329-71801348 None:intergenic 25.0%
! AGTCAATCTCATGAAAATTT+AGG + chr1_4:71801337-71801356 Msa0183010:intron 25.0%
! GTCAATCTCATGAAAATTTA+GGG + chr1_4:71801338-71801357 Msa0183010:intron 25.0%
! TTATTATCATTACGAGCATA+TGG + chr1_4:71801381-71801400 Msa0183010:intron 25.0%
!!! CAAAAGATAAGTTTTATGGT+TGG - chr1_4:71801409-71801428 None:intergenic 25.0%
!! GAAGCAAAAGATAAGTTTTA+TGG - chr1_4:71801413-71801432 None:intergenic 25.0%
!! CCACTTCTTTATTCTTTTTA+AGG - chr1_4:71801474-71801493 None:intergenic 25.0%
! CCTTAAAAAGAATAAAGAAG+TGG + chr1_4:71801471-71801490 Msa0183010:intron 25.0%
! ACTAATATGTGATCTTACAA+TGG + chr1_4:71801624-71801643 Msa0183010:intron 25.0%
! GTTATATTGCAAAACAGAAA+TGG + chr1_4:71801966-71801985 Msa0183010:intron 25.0%
! AAATGCATCTTAAGAACATA+AGG - chr1_4:71802039-71802058 None:intergenic 25.0%
!!! TTATTTTTATTGCTGTGACT+TGG + chr1_4:71800801-71800820 Msa0183010:intron 25.0%
! ATATCACAGTAAAATATGAG+AGG - chr1_4:71800942-71800961 None:intergenic 25.0%
! CAGTTAAAAATATACTGAAC+TGG - chr1_4:71801114-71801133 None:intergenic 25.0%
!! TCTAAACATGATTAGTTCAA+GGG - chr1_4:71801292-71801311 None:intergenic 25.0%
!! TTCTAAACATGATTAGTTCA+AGG - chr1_4:71801293-71801312 None:intergenic 25.0%
!!! ATGAGATTGACTTTCATTTT+TGG - chr1_4:71801329-71801348 None:intergenic 25.0%
! AGTCAATCTCATGAAAATTT+AGG + chr1_4:71801337-71801356 Msa0183010:intron 25.0%
! GTCAATCTCATGAAAATTTA+GGG + chr1_4:71801338-71801357 Msa0183010:intron 25.0%
! TTATTATCATTACGAGCATA+TGG + chr1_4:71801381-71801400 Msa0183010:intron 25.0%
!!! CAAAAGATAAGTTTTATGGT+TGG - chr1_4:71801409-71801428 None:intergenic 25.0%
!! GAAGCAAAAGATAAGTTTTA+TGG - chr1_4:71801413-71801432 None:intergenic 25.0%
!! CCACTTCTTTATTCTTTTTA+AGG - chr1_4:71801474-71801493 None:intergenic 25.0%
! CCTTAAAAAGAATAAAGAAG+TGG + chr1_4:71801471-71801490 Msa0183010:intron 25.0%
! ACTAATATGTGATCTTACAA+TGG + chr1_4:71801624-71801643 Msa0183010:intron 25.0%
! GTTATATTGCAAAACAGAAA+TGG + chr1_4:71801966-71801985 Msa0183010:intron 25.0%
! AAATGCATCTTAAGAACATA+AGG - chr1_4:71802039-71802058 None:intergenic 25.0%
! AAATCTGTTTTGCAGAAAGA+AGG - chr1_4:71800548-71800567 None:intergenic 30.0%
TTTCTGCAAAACAGATTTCT+CGG + chr1_4:71800550-71800569 Msa0183010:five_prime_UTR 30.0%
ATGTTACGATATTCTGATAC+AGG + chr1_4:71801184-71801203 Msa0183010:intron 30.0%
TCTTGTTCATTATTGTACAC+AGG - chr1_4:71801214-71801233 None:intergenic 30.0%
TCTCTAATATGCAGAAAGAT+TGG - chr1_4:71801261-71801280 None:intergenic 30.0%
CTATGTTTCTCTTATAGATC+AGG + chr1_4:71801496-71801515 Msa0183010:intron 30.0%
TCTTATAGATCAGGACATAA+TGG + chr1_4:71801505-71801524 Msa0183010:intron 30.0%
AACAAAATGCTTGAGTTTAG+AGG + chr1_4:71801589-71801608 Msa0183010:intron 30.0%
GATCACATATTAGTAATCCA+AGG - chr1_4:71801618-71801637 None:intergenic 30.0%
!! ATATGCTTCAATTTGCTATG+TGG + chr1_4:71801651-71801670 Msa0183010:intron 30.0%
! AAGTTACAGTTTGTCCATTT+TGG + chr1_4:71801692-71801711 Msa0183010:intron 30.0%
! TAAGATTGTTGTTCGTTTCT+TGG + chr1_4:71801944-71801963 Msa0183010:intron 30.0%
TTCAGATATTGTGTAAGTCT+GGG - chr1_4:71802015-71802034 None:intergenic 30.0%
TTTCAGATATTGTGTAAGTC+TGG - chr1_4:71802016-71802035 None:intergenic 30.0%
ATGTTTGATGAGAAACTTGA+TGG - chr1_4:71802493-71802512 None:intergenic 30.0%
!!! TGATTGTTGTTTTGGTTTCA+TGG + chr1_4:71802556-71802575 Msa0183010:three_prime_UTR 30.0%
! AAATCTGTTTTGCAGAAAGA+AGG - chr1_4:71800548-71800567 None:intergenic 30.0%
TTTCTGCAAAACAGATTTCT+CGG + chr1_4:71800550-71800569 Msa0183010:five_prime_UTR 30.0%
ATGTTACGATATTCTGATAC+AGG + chr1_4:71801184-71801203 Msa0183010:intron 30.0%
TCTTGTTCATTATTGTACAC+AGG - chr1_4:71801214-71801233 None:intergenic 30.0%
TCTCTAATATGCAGAAAGAT+TGG - chr1_4:71801261-71801280 None:intergenic 30.0%
CTATGTTTCTCTTATAGATC+AGG + chr1_4:71801496-71801515 Msa0183010:intron 30.0%
TCTTATAGATCAGGACATAA+TGG + chr1_4:71801505-71801524 Msa0183010:intron 30.0%
AACAAAATGCTTGAGTTTAG+AGG + chr1_4:71801589-71801608 Msa0183010:intron 30.0%
GATCACATATTAGTAATCCA+AGG - chr1_4:71801618-71801637 None:intergenic 30.0%
!! ATATGCTTCAATTTGCTATG+TGG + chr1_4:71801651-71801670 Msa0183010:intron 30.0%
! AAGTTACAGTTTGTCCATTT+TGG + chr1_4:71801692-71801711 Msa0183010:intron 30.0%
! TAAGATTGTTGTTCGTTTCT+TGG + chr1_4:71801944-71801963 Msa0183010:intron 30.0%
TTCAGATATTGTGTAAGTCT+GGG - chr1_4:71802015-71802034 None:intergenic 30.0%
TTTCAGATATTGTGTAAGTC+TGG - chr1_4:71802016-71802035 None:intergenic 30.0%
ATGTTTGATGAGAAACTTGA+TGG - chr1_4:71802493-71802512 None:intergenic 30.0%
!!! TGATTGTTGTTTTGGTTTCA+TGG + chr1_4:71802556-71802575 Msa0183010:three_prime_UTR 30.0%
AATACAAATCTCAGAGCAGA+GGG - chr1_4:71800694-71800713 None:intergenic 35.0%
AAATACAAATCTCAGAGCAG+AGG - chr1_4:71800695-71800714 None:intergenic 35.0%
! TGCTGCATCTTTGAAAAAAG+GGG - chr1_4:71800837-71800856 None:intergenic 35.0%
! CTGCTGCATCTTTGAAAAAA+GGG - chr1_4:71800838-71800857 None:intergenic 35.0%
!!! CTTTTTTCAAAGATGCAGCA+GGG + chr1_4:71800837-71800856 Msa0183010:intron 35.0%
AAAAAGGGGATGCTATGTAT+TGG - chr1_4:71800868-71800887 None:intergenic 35.0%
! TGTATCCACTGATTGATTAC+CGG + chr1_4:71800979-71800998 Msa0183010:intron 35.0%
AAGCGTAGTTGTCATAGTTT+CGG + chr1_4:71801006-71801025 Msa0183010:intron 35.0%
TACTTTGATCAAACAGTTGG+CGG - chr1_4:71801046-71801065 None:intergenic 35.0%
GACTACTTTGATCAAACAGT+TGG - chr1_4:71801049-71801068 None:intergenic 35.0%
!!! TTTCATTTTTGGCTTCTCAC+TGG - chr1_4:71801318-71801337 None:intergenic 35.0%
CTAAGATTATGGCCTATGTA+GGG - chr1_4:71801754-71801773 None:intergenic 35.0%
TGCAAAACCACCTAAGATTA+TGG - chr1_4:71801765-71801784 None:intergenic 35.0%
TTGCATCATATTACCAGTCA+AGG + chr1_4:71801780-71801799 Msa0183010:intron 35.0%
GTATCATGGAAAGGTAAAAG+CGG + chr1_4:71802266-71802285 Msa0183010:CDS 35.0%
AAAAAATACATGAGCAGCTC+AGG - chr1_4:71802453-71802472 None:intergenic 35.0%
!!! AAACAGTGTTTTAGCATCAG+AGG - chr1_4:71802592-71802611 None:intergenic 35.0%
GATGCTAAAACACTGTTTCA+TGG + chr1_4:71802594-71802613 Msa0183010:three_prime_UTR 35.0%
AATACAAATCTCAGAGCAGA+GGG - chr1_4:71800694-71800713 None:intergenic 35.0%
AAATACAAATCTCAGAGCAG+AGG - chr1_4:71800695-71800714 None:intergenic 35.0%
! TGCTGCATCTTTGAAAAAAG+GGG - chr1_4:71800837-71800856 None:intergenic 35.0%
! CTGCTGCATCTTTGAAAAAA+GGG - chr1_4:71800838-71800857 None:intergenic 35.0%
!!! CTTTTTTCAAAGATGCAGCA+GGG + chr1_4:71800837-71800856 Msa0183010:intron 35.0%
AAAAAGGGGATGCTATGTAT+TGG - chr1_4:71800868-71800887 None:intergenic 35.0%
! TGTATCCACTGATTGATTAC+CGG + chr1_4:71800979-71800998 Msa0183010:intron 35.0%
AAGCGTAGTTGTCATAGTTT+CGG + chr1_4:71801006-71801025 Msa0183010:intron 35.0%
TACTTTGATCAAACAGTTGG+CGG - chr1_4:71801046-71801065 None:intergenic 35.0%
GACTACTTTGATCAAACAGT+TGG - chr1_4:71801049-71801068 None:intergenic 35.0%
!!! TTTCATTTTTGGCTTCTCAC+TGG - chr1_4:71801318-71801337 None:intergenic 35.0%
CTAAGATTATGGCCTATGTA+GGG - chr1_4:71801754-71801773 None:intergenic 35.0%
TGCAAAACCACCTAAGATTA+TGG - chr1_4:71801765-71801784 None:intergenic 35.0%
TTGCATCATATTACCAGTCA+AGG + chr1_4:71801780-71801799 Msa0183010:intron 35.0%
GTATCATGGAAAGGTAAAAG+CGG + chr1_4:71802266-71802285 Msa0183010:CDS 35.0%
AAAAAATACATGAGCAGCTC+AGG - chr1_4:71802453-71802472 None:intergenic 35.0%
!!! AAACAGTGTTTTAGCATCAG+AGG - chr1_4:71802592-71802611 None:intergenic 35.0%
GATGCTAAAACACTGTTTCA+TGG + chr1_4:71802594-71802613 Msa0183010:three_prime_UTR 35.0%
ATGTTCGAACCTGTTTGTGA+CGG - chr1_4:71800670-71800689 None:intergenic 40.0%
! GCTGCATCTTTGAAAAAAGG+GGG - chr1_4:71800836-71800855 None:intergenic 40.0%
! CCTGCTGCATCTTTGAAAAA+AGG - chr1_4:71800839-71800858 None:intergenic 40.0%
!!! CCTTTTTTCAAAGATGCAGC+AGG + chr1_4:71800836-71800855 Msa0183010:intron 40.0%
TCAATCAGTGGATACAGCAA+GGG - chr1_4:71800975-71800994 None:intergenic 40.0%
ATCAATCAGTGGATACAGCA+AGG - chr1_4:71800976-71800995 None:intergenic 40.0%
TCTAACCGGTAATCAATCAG+TGG - chr1_4:71800987-71801006 None:intergenic 40.0%
ATGACAACTACGCTTCTAAC+CGG - chr1_4:71801001-71801020 None:intergenic 40.0%
AGCGTAGTTGTCATAGTTTC+GGG + chr1_4:71801007-71801026 Msa0183010:intron 40.0%
!!! TGTTTTGGCTTCAAGTTCCT+GGG + chr1_4:71801132-71801151 Msa0183010:intron 40.0%
!! TCAGGACATAATGGACATAC+TGG + chr1_4:71801514-71801533 Msa0183010:intron 40.0%
TTGAAAGAGATGCCCTACAT+AGG + chr1_4:71801739-71801758 Msa0183010:intron 40.0%
CCTAAGATTATGGCCTATGT+AGG - chr1_4:71801755-71801774 None:intergenic 40.0%
CCTACATAGGCCATAATCTT+AGG + chr1_4:71801752-71801771 Msa0183010:intron 40.0%
ACATAGGCCATAATCTTAGG+TGG + chr1_4:71801755-71801774 Msa0183010:intron 40.0%
CAGTCAAGGAATGTTGAAAG+CGG + chr1_4:71801794-71801813 Msa0183010:intron 40.0%
AGATATTGTGTAAGTCTGGG+AGG - chr1_4:71802012-71802031 None:intergenic 40.0%
AAAGATTGGGAAGCTACTAG+CGG + chr1_4:71802185-71802204 Msa0183010:CDS 40.0%
TTCAAGTGAACAGAAACAGC+AGG - chr1_4:71802234-71802253 None:intergenic 40.0%
TTCACTTGAAGAGAGAACAG+AGG + chr1_4:71802244-71802263 Msa0183010:CDS 40.0%
!! AAGAGAGAACAGAGGTATCA+TGG + chr1_4:71802252-71802271 Msa0183010:CDS 40.0%
!! AGAACAGAGGTATCATGGAA+AGG + chr1_4:71802257-71802276 Msa0183010:CDS 40.0%
!! AAGCGGTTATTGATTCTCTC+AGG + chr1_4:71802283-71802302 Msa0183010:CDS 40.0%
!! AGCGGTTATTGATTCTCTCA+GGG + chr1_4:71802284-71802303 Msa0183010:CDS 40.0%
ATGAGCAGCTCAGGTTTAAT+TGG - chr1_4:71802444-71802463 None:intergenic 40.0%
!! GTTTTAGCATCAGAGGTAGA+GGG - chr1_4:71802585-71802604 None:intergenic 40.0%
!!! TGTTTTAGCATCAGAGGTAG+AGG - chr1_4:71802586-71802605 None:intergenic 40.0%
! TGGTTTGCAGAGTTGCAAAT+TGG + chr1_4:71802627-71802646 Msa0183010:three_prime_UTR 40.0%
TGCAGAGTTGCAAATTGGTA+AGG + chr1_4:71802632-71802651 Msa0183010:three_prime_UTR 40.0%
CAAAAACACCGTACACTAGT+TGG - chr1_4:71802680-71802699 None:intergenic 40.0%
! CAACTAGTGTACGGTGTTTT+TGG + chr1_4:71802678-71802697 Msa0183010:three_prime_UTR 40.0%
ATGTTCGAACCTGTTTGTGA+CGG - chr1_4:71800670-71800689 None:intergenic 40.0%
! GCTGCATCTTTGAAAAAAGG+GGG - chr1_4:71800836-71800855 None:intergenic 40.0%
! CCTGCTGCATCTTTGAAAAA+AGG - chr1_4:71800839-71800858 None:intergenic 40.0%
!!! CCTTTTTTCAAAGATGCAGC+AGG + chr1_4:71800836-71800855 Msa0183010:intron 40.0%
TCAATCAGTGGATACAGCAA+GGG - chr1_4:71800975-71800994 None:intergenic 40.0%
ATCAATCAGTGGATACAGCA+AGG - chr1_4:71800976-71800995 None:intergenic 40.0%
TCTAACCGGTAATCAATCAG+TGG - chr1_4:71800987-71801006 None:intergenic 40.0%
ATGACAACTACGCTTCTAAC+CGG - chr1_4:71801001-71801020 None:intergenic 40.0%
AGCGTAGTTGTCATAGTTTC+GGG + chr1_4:71801007-71801026 Msa0183010:intron 40.0%
!!! TGTTTTGGCTTCAAGTTCCT+GGG + chr1_4:71801132-71801151 Msa0183010:intron 40.0%
!! TCAGGACATAATGGACATAC+TGG + chr1_4:71801514-71801533 Msa0183010:intron 40.0%
TTGAAAGAGATGCCCTACAT+AGG + chr1_4:71801739-71801758 Msa0183010:intron 40.0%
CCTAAGATTATGGCCTATGT+AGG - chr1_4:71801755-71801774 None:intergenic 40.0%
CCTACATAGGCCATAATCTT+AGG + chr1_4:71801752-71801771 Msa0183010:intron 40.0%
ACATAGGCCATAATCTTAGG+TGG + chr1_4:71801755-71801774 Msa0183010:intron 40.0%
CAGTCAAGGAATGTTGAAAG+CGG + chr1_4:71801794-71801813 Msa0183010:intron 40.0%
AGATATTGTGTAAGTCTGGG+AGG - chr1_4:71802012-71802031 None:intergenic 40.0%
AAAGATTGGGAAGCTACTAG+CGG + chr1_4:71802185-71802204 Msa0183010:CDS 40.0%
TTCAAGTGAACAGAAACAGC+AGG - chr1_4:71802234-71802253 None:intergenic 40.0%
TTCACTTGAAGAGAGAACAG+AGG + chr1_4:71802244-71802263 Msa0183010:CDS 40.0%
!! AAGAGAGAACAGAGGTATCA+TGG + chr1_4:71802252-71802271 Msa0183010:CDS 40.0%
!! AGAACAGAGGTATCATGGAA+AGG + chr1_4:71802257-71802276 Msa0183010:CDS 40.0%
!! AAGCGGTTATTGATTCTCTC+AGG + chr1_4:71802283-71802302 Msa0183010:CDS 40.0%
!! AGCGGTTATTGATTCTCTCA+GGG + chr1_4:71802284-71802303 Msa0183010:CDS 40.0%
ATGAGCAGCTCAGGTTTAAT+TGG - chr1_4:71802444-71802463 None:intergenic 40.0%
!! GTTTTAGCATCAGAGGTAGA+GGG - chr1_4:71802585-71802604 None:intergenic 40.0%
!!! TGTTTTAGCATCAGAGGTAG+AGG - chr1_4:71802586-71802605 None:intergenic 40.0%
! TGGTTTGCAGAGTTGCAAAT+TGG + chr1_4:71802627-71802646 Msa0183010:three_prime_UTR 40.0%
TGCAGAGTTGCAAATTGGTA+AGG + chr1_4:71802632-71802651 Msa0183010:three_prime_UTR 40.0%
CAAAAACACCGTACACTAGT+TGG - chr1_4:71802680-71802699 None:intergenic 40.0%
! CAACTAGTGTACGGTGTTTT+TGG + chr1_4:71802678-71802697 Msa0183010:three_prime_UTR 40.0%
GCGTAGTTGTCATAGTTTCG+GGG + chr1_4:71801008-71801027 Msa0183010:intron 45.0%
!!! CTGTTTTGGCTTCAAGTTCC+TGG + chr1_4:71801131-71801150 Msa0183010:intron 45.0%
!!! GTTTTGGCTTCAAGTTCCTG+GGG + chr1_4:71801133-71801152 Msa0183010:intron 45.0%
AATAACACTTGGAACACCCC+AGG - chr1_4:71801152-71801171 None:intergenic 45.0%
TGGACATACTGGTAGAAACG+AGG + chr1_4:71801525-71801544 Msa0183010:intron 45.0%
CTTGAGTTTAGAGGAAGCCT+TGG + chr1_4:71801598-71801617 Msa0183010:intron 45.0%
CGCTTTCAACATTCCTTGAC+TGG - chr1_4:71801796-71801815 None:intergenic 45.0%
AGTTTCCAGGCTTGATCTCA+AGG - chr1_4:71802142-71802161 None:intergenic 45.0%
GATCAAGCCTGGAAACTACT+CGG + chr1_4:71802145-71802164 Msa0183010:CDS 45.0%
ATCAAGCCTGGAAACTACTC+GGG + chr1_4:71802146-71802165 Msa0183010:CDS 45.0%
TTGCTGCAGCTGCAAAGATT+GGG + chr1_4:71802172-71802191 Msa0183010:CDS 45.0%
! ATTGATTCTCTCAGGGAAGC+TGG + chr1_4:71802291-71802310 Msa0183010:CDS 45.0%
TGTTTCATGGCAAGCGTAAG+TGG + chr1_4:71802607-71802626 Msa0183010:three_prime_UTR 45.0%
AAACACCGTACACTAGTTGG+TGG - chr1_4:71802677-71802696 None:intergenic 45.0%
GCGTAGTTGTCATAGTTTCG+GGG + chr1_4:71801008-71801027 Msa0183010:intron 45.0%
!!! CTGTTTTGGCTTCAAGTTCC+TGG + chr1_4:71801131-71801150 Msa0183010:intron 45.0%
!!! GTTTTGGCTTCAAGTTCCTG+GGG + chr1_4:71801133-71801152 Msa0183010:intron 45.0%
AATAACACTTGGAACACCCC+AGG - chr1_4:71801152-71801171 None:intergenic 45.0%
TGGACATACTGGTAGAAACG+AGG + chr1_4:71801525-71801544 Msa0183010:intron 45.0%
CTTGAGTTTAGAGGAAGCCT+TGG + chr1_4:71801598-71801617 Msa0183010:intron 45.0%
CGCTTTCAACATTCCTTGAC+TGG - chr1_4:71801796-71801815 None:intergenic 45.0%
AGTTTCCAGGCTTGATCTCA+AGG - chr1_4:71802142-71802161 None:intergenic 45.0%
GATCAAGCCTGGAAACTACT+CGG + chr1_4:71802145-71802164 Msa0183010:CDS 45.0%
ATCAAGCCTGGAAACTACTC+GGG + chr1_4:71802146-71802165 Msa0183010:CDS 45.0%
TTGCTGCAGCTGCAAAGATT+GGG + chr1_4:71802172-71802191 Msa0183010:CDS 45.0%
! ATTGATTCTCTCAGGGAAGC+TGG + chr1_4:71802291-71802310 Msa0183010:CDS 45.0%
TGTTTCATGGCAAGCGTAAG+TGG + chr1_4:71802607-71802626 Msa0183010:three_prime_UTR 45.0%
AAACACCGTACACTAGTTGG+TGG - chr1_4:71802677-71802696 None:intergenic 45.0%
GCACGAGAGAAAGAGCAGTA+GGG - chr1_4:71800584-71800603 None:intergenic 50.0%
TGCACGAGAGAAAGAGCAGT+AGG - chr1_4:71800585-71800604 None:intergenic 50.0%
AGAAAGGAACGGGATGGGAA+GGG - chr1_4:71800645-71800664 None:intergenic 50.0%
TTGTGACGGCGAGAAAGGAA+CGG - chr1_4:71800656-71800675 None:intergenic 50.0%
TCAGTGGATACAGCAAGGGT+GGG - chr1_4:71800971-71800990 None:intergenic 50.0%
ATCAGTGGATACAGCAAGGG+TGG - chr1_4:71800972-71800991 None:intergenic 50.0%
ACTGGTAGAAACGAGGTGTG+AGG + chr1_4:71801532-71801551 Msa0183010:intron 50.0%
AGAAACGAGGTGTGAGGATG+AGG + chr1_4:71801538-71801557 Msa0183010:intron 50.0%
TGAGCTTGCAGAAGAGGCAA+CGG - chr1_4:71802109-71802128 None:intergenic 50.0%
GAAAGCCTTGAGATCAAGCC+TGG + chr1_4:71802134-71802153 Msa0183010:CDS 50.0%
CAACATCCCGAGTAGTTTCC+AGG - chr1_4:71802155-71802174 None:intergenic 50.0%
GTTGCTGCAGCTGCAAAGAT+TGG + chr1_4:71802171-71802190 Msa0183010:CDS 50.0%
CAGGAATGTCCTTGAGCGAA+AGG - chr1_4:71802215-71802234 None:intergenic 50.0%
TTTGATCACTCGTTCGCAGG+AGG - chr1_4:71802388-71802407 None:intergenic 50.0%
TCCTGCGAACGAGTGATCAA+AGG + chr1_4:71802387-71802406 Msa0183010:three_prime_UTR 50.0%
ACCTTTGATCACTCGTTCGC+AGG - chr1_4:71802391-71802410 None:intergenic 50.0%
GACTGCCACCAACTAGTGTA+CGG + chr1_4:71802669-71802688 Msa0183010:three_prime_UTR 50.0%
GCACGAGAGAAAGAGCAGTA+GGG - chr1_4:71800584-71800603 None:intergenic 50.0%
TGCACGAGAGAAAGAGCAGT+AGG - chr1_4:71800585-71800604 None:intergenic 50.0%
AGAAAGGAACGGGATGGGAA+GGG - chr1_4:71800645-71800664 None:intergenic 50.0%
TTGTGACGGCGAGAAAGGAA+CGG - chr1_4:71800656-71800675 None:intergenic 50.0%
TCAGTGGATACAGCAAGGGT+GGG - chr1_4:71800971-71800990 None:intergenic 50.0%
ATCAGTGGATACAGCAAGGG+TGG - chr1_4:71800972-71800991 None:intergenic 50.0%
ACTGGTAGAAACGAGGTGTG+AGG + chr1_4:71801532-71801551 Msa0183010:intron 50.0%
AGAAACGAGGTGTGAGGATG+AGG + chr1_4:71801538-71801557 Msa0183010:intron 50.0%
TGAGCTTGCAGAAGAGGCAA+CGG - chr1_4:71802109-71802128 None:intergenic 50.0%
GAAAGCCTTGAGATCAAGCC+TGG + chr1_4:71802134-71802153 Msa0183010:CDS 50.0%
CAACATCCCGAGTAGTTTCC+AGG - chr1_4:71802155-71802174 None:intergenic 50.0%
GTTGCTGCAGCTGCAAAGAT+TGG + chr1_4:71802171-71802190 Msa0183010:CDS 50.0%
CAGGAATGTCCTTGAGCGAA+AGG - chr1_4:71802215-71802234 None:intergenic 50.0%
TTTGATCACTCGTTCGCAGG+AGG - chr1_4:71802388-71802407 None:intergenic 50.0%
TCCTGCGAACGAGTGATCAA+AGG + chr1_4:71802387-71802406 Msa0183010:three_prime_UTR 50.0%
ACCTTTGATCACTCGTTCGC+AGG - chr1_4:71802391-71802410 None:intergenic 50.0%
GACTGCCACCAACTAGTGTA+CGG + chr1_4:71802669-71802688 Msa0183010:three_prime_UTR 50.0%
GAGAAAGGAACGGGATGGGA+AGG - chr1_4:71800646-71800665 None:intergenic 55.0%
TGTGACGGCGAGAAAGGAAC+GGG - chr1_4:71800655-71800674 None:intergenic 55.0%
CCTGTTTGTGACGGCGAGAA+AGG - chr1_4:71800661-71800680 None:intergenic 55.0%
CCTTTCTCGCCGTCACAAAC+AGG + chr1_4:71800658-71800677 Msa0183010:five_prime_UTR 55.0%
TGGTTATCCCACCTCCAGTC+AGG + chr1_4:71801986-71802005 Msa0183010:CDS 55.0%
CAACGGTAGCAGTTGGAGTG+TGG - chr1_4:71802092-71802111 None:intergenic 55.0%
GAAGAGGCAACGGTAGCAGT+TGG - chr1_4:71802099-71802118 None:intergenic 55.0%
TGCCTCTTCTGCAAGCTCAC+AGG + chr1_4:71802110-71802129 Msa0183010:CDS 55.0%
CTCCTGTGAGCTTGCAGAAG+AGG - chr1_4:71802115-71802134 None:intergenic 55.0%
GCAGGAGGCAAGGTTCAACA+AGG - chr1_4:71802373-71802392 None:intergenic 55.0%
GAGAAAGGAACGGGATGGGA+AGG - chr1_4:71800646-71800665 None:intergenic 55.0%
TGTGACGGCGAGAAAGGAAC+GGG - chr1_4:71800655-71800674 None:intergenic 55.0%
CCTGTTTGTGACGGCGAGAA+AGG - chr1_4:71800661-71800680 None:intergenic 55.0%
CCTTTCTCGCCGTCACAAAC+AGG + chr1_4:71800658-71800677 Msa0183010:five_prime_UTR 55.0%
TGGTTATCCCACCTCCAGTC+AGG + chr1_4:71801986-71802005 Msa0183010:CDS 55.0%
CAACGGTAGCAGTTGGAGTG+TGG - chr1_4:71802092-71802111 None:intergenic 55.0%
GAAGAGGCAACGGTAGCAGT+TGG - chr1_4:71802099-71802118 None:intergenic 55.0%
TGCCTCTTCTGCAAGCTCAC+AGG + chr1_4:71802110-71802129 Msa0183010:CDS 55.0%
CTCCTGTGAGCTTGCAGAAG+AGG - chr1_4:71802115-71802134 None:intergenic 55.0%
GCAGGAGGCAAGGTTCAACA+AGG - chr1_4:71802373-71802392 None:intergenic 55.0%
ATGGGAAGGGAGTGGCTGAC+CGG - chr1_4:71800632-71800651 None:intergenic 60.0%
CGGCGAGAAAGGAACGGGAT+GGG - chr1_4:71800650-71800669 None:intergenic 60.0%
ACGGCGAGAAAGGAACGGGA+TGG - chr1_4:71800651-71800670 None:intergenic 60.0%
GTAAGTCTGGGAGGCCTGAC+TGG - chr1_4:71802003-71802022 None:intergenic 60.0%
AGCGGAACGCCTTTCGCTCA+AGG + chr1_4:71802203-71802222 Msa0183010:CDS 60.0%
TCACTCGTTCGCAGGAGGCA+AGG - chr1_4:71802383-71802402 None:intergenic 60.0%
ATGGGAAGGGAGTGGCTGAC+CGG - chr1_4:71800632-71800651 None:intergenic 60.0%
CGGCGAGAAAGGAACGGGAT+GGG - chr1_4:71800650-71800669 None:intergenic 60.0%
ACGGCGAGAAAGGAACGGGA+TGG - chr1_4:71800651-71800670 None:intergenic 60.0%
GTAAGTCTGGGAGGCCTGAC+TGG - chr1_4:71802003-71802022 None:intergenic 60.0%
AGCGGAACGCCTTTCGCTCA+AGG + chr1_4:71802203-71802222 Msa0183010:CDS 60.0%
TCACTCGTTCGCAGGAGGCA+AGG - chr1_4:71802383-71802402 None:intergenic 60.0%
GCTGACCGGAGTGGACGTGA+CGG - chr1_4:71800618-71800637 None:intergenic 65.0%
AAGGGAGTGGCTGACCGGAG+TGG - chr1_4:71800627-71800646 None:intergenic 65.0%
GGAACGGGATGGGAAGGGAG+TGG - chr1_4:71800640-71800659 None:intergenic 65.0%
TGGGAGGCCTGACTGGAGGT+GGG - chr1_4:71801996-71802015 None:intergenic 65.0%
AGTCTGGGAGGCCTGACTGG+AGG - chr1_4:71802000-71802019 None:intergenic 65.0%
GCTGACCGGAGTGGACGTGA+CGG - chr1_4:71800618-71800637 None:intergenic 65.0%
AAGGGAGTGGCTGACCGGAG+TGG - chr1_4:71800627-71800646 None:intergenic 65.0%
GGAACGGGATGGGAAGGGAG+TGG - chr1_4:71800640-71800659 None:intergenic 65.0%
TGGGAGGCCTGACTGGAGGT+GGG - chr1_4:71801996-71802015 None:intergenic 65.0%
AGTCTGGGAGGCCTGACTGG+AGG - chr1_4:71802000-71802019 None:intergenic 65.0%
GACCGGAGTGGACGTGACGG+CGG - chr1_4:71800615-71800634 None:intergenic 70.0%
CTGGGAGGCCTGACTGGAGG+TGG - chr1_4:71801997-71802016 None:intergenic 70.0%
GACCGGAGTGGACGTGACGG+CGG - chr1_4:71800615-71800634 None:intergenic 70.0%
CTGGGAGGCCTGACTGGAGG+TGG - chr1_4:71801997-71802016 None:intergenic 70.0%
CGGAGTGGACGTGACGGCGG+CGG - chr1_4:71800612-71800631 None:intergenic 75.0%
CGCCGCCGTCACGTCCACTC+CGG + chr1_4:71800610-71800629 Msa0183010:five_prime_UTR 75.0%
CGGAGTGGACGTGACGGCGG+CGG - chr1_4:71800612-71800631 None:intergenic 75.0%
CGCCGCCGTCACGTCCACTC+CGG + chr1_4:71800610-71800629 Msa0183010:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 71800512 71802702 71800512 ID=Msa0183010;Name=Msa0183010
chr1_4 mRNA 71800512 71802702 71800512 ID=Msa0183010-mRNA-1;Parent=Msa0183010;Name=Msa0183010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=168|0|0.5|1|0|1|2|373|114
chr1_4 exon 71800512 71800679 71800512 ID=Msa0183010-mRNA-1:exon:24097;Parent=Msa0183010-mRNA-1
chr1_4 exon 71801985 71802702 71801985 ID=Msa0183010-mRNA-1:exon:24098;Parent=Msa0183010-mRNA-1
chr1_4 five_prime_UTR 71800512 71800679 71800512 ID=Msa0183010-mRNA-1:five_prime_utr;Parent=Msa0183010-mRNA-1
chr1_4 CDS 71801985 71802329 71801985 ID=Msa0183010-mRNA-1:cds;Parent=Msa0183010-mRNA-1
chr1_4 three_prime_UTR 71802330 71802702 71802330 ID=Msa0183010-mRNA-1:three_prime_utr;Parent=Msa0183010-mRNA-1
Gene Sequence

>Msa0183010

ATGGTTATCCCACCTCCAGTCAGGCCTCCCAGACTTACACAATATCTGAAACCTTATGTTCTTAAGATGCATTTCACAAATAAGTATGTGAGTGCTCAAGTGATCCACACTCCAACTGCTACCGTTGCCTCTTCTGCAAGCTCACAGGAGAAAGCCTTGAGATCAAGCCTGGAAACTACTCGGGATGTTGCTGCAGCTGCAAAGATTGGGAAGCTACTAGCGGAACGCCTTTCGCTCAAGGACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAACAGAGGTATCATGGAAAGGTAAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGTTGCTTTGA

Protein sequence

>Msa0183010

MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVKLL*