Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007390 | Msa0055960 | 0.867053 | 1.816147e-65 | -8.615850e-47 |
| Msa0055840 | Msa0055960 | 0.832753 | 7.898752e-56 | -8.615850e-47 |
| Msa0055960 | Msa0055970 | 0.848289 | 6.738817e-60 | -8.615850e-47 |
| Msa0055960 | Msa0127170 | 0.816756 | 4.692331e-52 | -8.615850e-47 |
| Msa0055960 | Msa0153480 | 0.936691 | 1.158517e-97 | -8.615850e-47 |
| Msa0055960 | Msa1462150 | 0.816124 | 6.500357e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATTGGCTTCAAACTCT+TGG | 0.352568 | 1_2:-11432384 | None:intergenic |
| CAGATGGGGAAGGCATTAAA+AGG | 0.366366 | 1_2:-11432275 | None:intergenic |
| CAGCATAAGCATTCTACAAC+TGG | 0.369478 | 1_2:-11432142 | None:intergenic |
| GTGTTTCGTACCGGATCATT+TGG | 0.374536 | 1_2:-11430634 | None:intergenic |
| AAAATCTGAAACAAAATTGC+TGG | 0.400253 | 1_2:-11432213 | None:intergenic |
| TTGCTTCCTGCAGTTGGAGA+TGG | 0.406758 | 1_2:-11432239 | None:intergenic |
| CTGTCTTATTTCGTCAAGCT+TGG | 0.420981 | 1_2:+11432360 | Msa0055960:CDS |
| ACAAAATTGCTGGTGCTGTT+TGG | 0.432289 | 1_2:-11432203 | None:intergenic |
| TTTGATCCATCTCCAACTGC+AGG | 0.517421 | 1_2:+11432233 | Msa0055960:CDS |
| TCCACGTCATCCAAATGATC+CGG | 0.525119 | 1_2:+11430624 | Msa0055960:CDS |
| TAGGTAGAGAAGTCTTTCAC+AGG | 0.526998 | 1_2:+11432097 | Msa0055960:intron |
| TGCAACTGCAGAAATACAGA+TGG | 0.592512 | 1_2:-11432291 | None:intergenic |
| GCAACTGCAGAAATACAGAT+GGG | 0.599931 | 1_2:-11432290 | None:intergenic |
| ACTGGGTAGTAGTTCTACTT+CGG | 0.612443 | 1_2:-11432124 | None:intergenic |
| ACCGGATCATTTGGATGACG+TGG | 0.617747 | 1_2:-11430625 | None:intergenic |
| TGCAGAAATACAGATGGGGA+AGG | 0.637630 | 1_2:-11432285 | None:intergenic |
| AGCATAAGCATTCTACAACT+GGG | 0.638970 | 1_2:-11432141 | None:intergenic |
| ATGGGGAAGGCATTAAAAGG+AGG | 0.671654 | 1_2:-11432272 | None:intergenic |
| AGGTAGAGAAGTCTTTCACA+GGG | 0.675471 | 1_2:+11432098 | Msa0055960:intron |
| GAACTTTCAACTCTTCACGA+CGG | 0.711527 | 1_2:-11430906 | None:intergenic |
| CAACTGCAGAAATACAGATG+GGG | 0.716883 | 1_2:-11432289 | None:intergenic |
| CTTGACGAAATAAGACAGCG+TGG | 0.740760 | 1_2:-11432355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGATTATATCAGTTT+AGG | + | chr1_2:11432071-11432090 | Msa0055960:intron | 15.0% |
| !! | ATTAATGATTATATCAGTTT+AGG | + | chr1_2:11432071-11432090 | Msa0055960:intron | 15.0% |
| !! | ATTGAAATAAGATTTCACTT+TGG | + | chr1_2:11431517-11431536 | Msa0055960:intron | 20.0% |
| !!! | AGAAATAACTTGTACTTTAT+AGG | - | chr1_2:11431628-11431647 | None:intergenic | 20.0% |
| !! | CAATTAATATTATTTCCCTA+AGG | - | chr1_2:11432013-11432032 | None:intergenic | 20.0% |
| !!! | ATTATATCAGTTTAGGTTAT+AGG | + | chr1_2:11432078-11432097 | Msa0055960:intron | 20.0% |
| !! | ATTGAAATAAGATTTCACTT+TGG | + | chr1_2:11431517-11431536 | Msa0055960:intron | 20.0% |
| !!! | AGAAATAACTTGTACTTTAT+AGG | - | chr1_2:11431628-11431647 | None:intergenic | 20.0% |
| !! | CAATTAATATTATTTCCCTA+AGG | - | chr1_2:11432013-11432032 | None:intergenic | 20.0% |
| !!! | ATTATATCAGTTTAGGTTAT+AGG | + | chr1_2:11432078-11432097 | Msa0055960:intron | 20.0% |
| ! | ATTGAATGATTATCCGTTAA+TGG | - | chr1_2:11430686-11430705 | None:intergenic | 25.0% |
| ! | AAAGAGTAAATACGAACAAA+CGG | - | chr1_2:11430959-11430978 | None:intergenic | 25.0% |
| ! | GTATTTACTCTTTCTTGATT+TGG | + | chr1_2:11430966-11430985 | Msa0055960:intron | 25.0% |
| !!! | TTTAGATTAGAAGCTGTTTT+TGG | + | chr1_2:11431134-11431153 | Msa0055960:intron | 25.0% |
| !!! | TTGTTTTGTTTTGTTTGTTG+TGG | + | chr1_2:11431242-11431261 | Msa0055960:intron | 25.0% |
| ! | CTTCATATCATGTTATGTTT+AGG | + | chr1_2:11431280-11431299 | Msa0055960:intron | 25.0% |
| ! | TCAATTAATTATGACCCATA+TGG | + | chr1_2:11431560-11431579 | Msa0055960:intron | 25.0% |
| ! | CAATTAATTATGACCCATAT+GGG | + | chr1_2:11431561-11431580 | Msa0055960:intron | 25.0% |
| ! | AATTAATTATGACCCATATG+GGG | + | chr1_2:11431562-11431581 | Msa0055960:intron | 25.0% |
| !! | TATGAGAGAGCAAATTTTTA+TGG | + | chr1_2:11432034-11432053 | Msa0055960:intron | 25.0% |
| !! | ATGAGAGAGCAAATTTTTAT+GGG | + | chr1_2:11432035-11432054 | Msa0055960:intron | 25.0% |
| !! | AGATATGAGTCTGTAATTTT+TGG | + | chr1_2:11432168-11432187 | Msa0055960:CDS | 25.0% |
| !! | AAAATCTGAAACAAAATTGC+TGG | - | chr1_2:11432216-11432235 | None:intergenic | 25.0% |
| ! | ATTGAATGATTATCCGTTAA+TGG | - | chr1_2:11430686-11430705 | None:intergenic | 25.0% |
| ! | AAAGAGTAAATACGAACAAA+CGG | - | chr1_2:11430959-11430978 | None:intergenic | 25.0% |
| ! | GTATTTACTCTTTCTTGATT+TGG | + | chr1_2:11430966-11430985 | Msa0055960:intron | 25.0% |
| !!! | TTTAGATTAGAAGCTGTTTT+TGG | + | chr1_2:11431134-11431153 | Msa0055960:intron | 25.0% |
| !!! | TTGTTTTGTTTTGTTTGTTG+TGG | + | chr1_2:11431242-11431261 | Msa0055960:intron | 25.0% |
| ! | CTTCATATCATGTTATGTTT+AGG | + | chr1_2:11431280-11431299 | Msa0055960:intron | 25.0% |
| ! | TCAATTAATTATGACCCATA+TGG | + | chr1_2:11431560-11431579 | Msa0055960:intron | 25.0% |
| ! | CAATTAATTATGACCCATAT+GGG | + | chr1_2:11431561-11431580 | Msa0055960:intron | 25.0% |
| ! | AATTAATTATGACCCATATG+GGG | + | chr1_2:11431562-11431581 | Msa0055960:intron | 25.0% |
| !! | TATGAGAGAGCAAATTTTTA+TGG | + | chr1_2:11432034-11432053 | Msa0055960:intron | 25.0% |
| !! | ATGAGAGAGCAAATTTTTAT+GGG | + | chr1_2:11432035-11432054 | Msa0055960:intron | 25.0% |
| !! | AGATATGAGTCTGTAATTTT+TGG | + | chr1_2:11432168-11432187 | Msa0055960:CDS | 25.0% |
| !! | AAAATCTGAAACAAAATTGC+TGG | - | chr1_2:11432216-11432235 | None:intergenic | 25.0% |
| TTGTGATAGGTAATGTAGTT+TGG | + | chr1_2:11431083-11431102 | Msa0055960:intron | 30.0% | |
| ! | TGAAATTTACCTGTTTGTTG+AGG | + | chr1_2:11431216-11431235 | Msa0055960:intron | 30.0% |
| AAACAAAAACCTCAACAAAC+AGG | - | chr1_2:11431228-11431247 | None:intergenic | 30.0% | |
| CATATCATGTTATGTTTAGG+AGG | + | chr1_2:11431283-11431302 | Msa0055960:intron | 30.0% | |
| TAACACGATTCATTGCTATA+AGG | + | chr1_2:11431412-11431431 | Msa0055960:intron | 30.0% | |
| AACACGATTCATTGCTATAA+GGG | + | chr1_2:11431413-11431432 | Msa0055960:intron | 30.0% | |
| GAGTTCAATATGATTCAACT+GGG | - | chr1_2:11431773-11431792 | None:intergenic | 30.0% | |
| TGAGTTCAATATGATTCAAC+TGG | - | chr1_2:11431774-11431793 | None:intergenic | 30.0% | |
| GTTGAATCATATTGAACTCA+TGG | + | chr1_2:11431774-11431793 | Msa0055960:intron | 30.0% | |
| ATGTCTTCGTATCACAATTA+CGG | - | chr1_2:11431824-11431843 | None:intergenic | 30.0% | |
| TTACATAGATGATTGACCTT+AGG | + | chr1_2:11431994-11432013 | Msa0055960:intron | 30.0% | |
| TACATAGATGATTGACCTTA+GGG | + | chr1_2:11431995-11432014 | Msa0055960:intron | 30.0% | |
| ! | AAATTTTTATGGGAGACTCA+AGG | + | chr1_2:11432045-11432064 | Msa0055960:intron | 30.0% |
| ! | AATTTTTATGGGAGACTCAA+GGG | + | chr1_2:11432046-11432065 | Msa0055960:intron | 30.0% |
| !! | TATGAGTCTGTAATTTTTGG+AGG | + | chr1_2:11432171-11432190 | Msa0055960:CDS | 30.0% |
| !! | ATGAGTCTGTAATTTTTGGA+GGG | + | chr1_2:11432172-11432191 | Msa0055960:CDS | 30.0% |
| TTGTGATAGGTAATGTAGTT+TGG | + | chr1_2:11431083-11431102 | Msa0055960:intron | 30.0% | |
| ! | TGAAATTTACCTGTTTGTTG+AGG | + | chr1_2:11431216-11431235 | Msa0055960:intron | 30.0% |
| AAACAAAAACCTCAACAAAC+AGG | - | chr1_2:11431228-11431247 | None:intergenic | 30.0% | |
| CATATCATGTTATGTTTAGG+AGG | + | chr1_2:11431283-11431302 | Msa0055960:intron | 30.0% | |
| TAACACGATTCATTGCTATA+AGG | + | chr1_2:11431412-11431431 | Msa0055960:intron | 30.0% | |
| AACACGATTCATTGCTATAA+GGG | + | chr1_2:11431413-11431432 | Msa0055960:intron | 30.0% | |
| GAGTTCAATATGATTCAACT+GGG | - | chr1_2:11431773-11431792 | None:intergenic | 30.0% | |
| TGAGTTCAATATGATTCAAC+TGG | - | chr1_2:11431774-11431793 | None:intergenic | 30.0% | |
| GTTGAATCATATTGAACTCA+TGG | + | chr1_2:11431774-11431793 | Msa0055960:intron | 30.0% | |
| ATGTCTTCGTATCACAATTA+CGG | - | chr1_2:11431824-11431843 | None:intergenic | 30.0% | |
| TTACATAGATGATTGACCTT+AGG | + | chr1_2:11431994-11432013 | Msa0055960:intron | 30.0% | |
| TACATAGATGATTGACCTTA+GGG | + | chr1_2:11431995-11432014 | Msa0055960:intron | 30.0% | |
| ! | AAATTTTTATGGGAGACTCA+AGG | + | chr1_2:11432045-11432064 | Msa0055960:intron | 30.0% |
| ! | AATTTTTATGGGAGACTCAA+GGG | + | chr1_2:11432046-11432065 | Msa0055960:intron | 30.0% |
| !! | TATGAGTCTGTAATTTTTGG+AGG | + | chr1_2:11432171-11432190 | Msa0055960:CDS | 30.0% |
| !! | ATGAGTCTGTAATTTTTGGA+GGG | + | chr1_2:11432172-11432191 | Msa0055960:CDS | 30.0% |
| ! | TTGATTTTTGTGCAGATGGT+TGG | - | chr1_2:11430591-11430610 | None:intergenic | 35.0% |
| AGGGTGAGAAAATATCTATC+TGG | - | chr1_2:11430659-11430678 | None:intergenic | 35.0% | |
| ATTATCCGTTAATGGTGACA+GGG | - | chr1_2:11430678-11430697 | None:intergenic | 35.0% | |
| GAAGAATAAGCGATTATGAG+AGG | - | chr1_2:11430780-11430799 | None:intergenic | 35.0% | |
| !!! | CAAGGAAAAGCACTTTTCTA+CGG | - | chr1_2:11430839-11430858 | None:intergenic | 35.0% |
| ! | AAGTGCTTTTCCTTGAAGAT+TGG | + | chr1_2:11430844-11430863 | Msa0055960:intron | 35.0% |
| TTTCGAATCTCCAATCTTCA+AGG | - | chr1_2:11430857-11430876 | None:intergenic | 35.0% | |
| AGTTTCAGCTTCTTTGGATT+CGG | + | chr1_2:11431055-11431074 | Msa0055960:intron | 35.0% | |
| ACACCTTTGATTAGATGTGT+CGG | + | chr1_2:11431382-11431401 | Msa0055960:intron | 35.0% | |
| !! | ATTGCTATAAGGGTATCAAG+AGG | + | chr1_2:11431423-11431442 | Msa0055960:intron | 35.0% |
| TTGTCTTTAGTAGTGATCCA+TGG | + | chr1_2:11431469-11431488 | Msa0055960:intron | 35.0% | |
| TTAAGTTTCTCACCCCATAT+GGG | - | chr1_2:11431577-11431596 | None:intergenic | 35.0% | |
| ATTAAGTTTCTCACCCCATA+TGG | - | chr1_2:11431578-11431597 | None:intergenic | 35.0% | |
| TGAATAGTCTCACAAGTGTT+TGG | + | chr1_2:11431714-11431733 | Msa0055960:intron | 35.0% | |
| GAATAGTCTCACAAGTGTTT+GGG | + | chr1_2:11431715-11431734 | Msa0055960:intron | 35.0% | |
| CTTAAGTAAGCTAGTTCAAC+TGG | + | chr1_2:11431742-11431761 | Msa0055960:intron | 35.0% | |
| !!! | CTCATGGTTTTGAATTGTTG+TGG | + | chr1_2:11431790-11431809 | Msa0055960:intron | 35.0% |
| CAGAATTCTTGCAAAAACTG+CGG | - | chr1_2:11431872-11431891 | None:intergenic | 35.0% | |
| ATGACTCAAAATTCTAGACC+TGG | + | chr1_2:11431899-11431918 | Msa0055960:intron | 35.0% | |
| TTTACAACACAAACCACTAG+AGG | - | chr1_2:11431943-11431962 | None:intergenic | 35.0% | |
| AGGTCAATCATCTATGTAAC+TGG | - | chr1_2:11431993-11432012 | None:intergenic | 35.0% | |
| AGCATAAGCATTCTACAACT+GGG | - | chr1_2:11432144-11432163 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCTTCCTGCAGT+TGG | - | chr1_2:11432248-11432267 | None:intergenic | 35.0% |
| ! | TTGATTTTTGTGCAGATGGT+TGG | - | chr1_2:11430591-11430610 | None:intergenic | 35.0% |
| AGGGTGAGAAAATATCTATC+TGG | - | chr1_2:11430659-11430678 | None:intergenic | 35.0% | |
| ATTATCCGTTAATGGTGACA+GGG | - | chr1_2:11430678-11430697 | None:intergenic | 35.0% | |
| GAAGAATAAGCGATTATGAG+AGG | - | chr1_2:11430780-11430799 | None:intergenic | 35.0% | |
| !!! | CAAGGAAAAGCACTTTTCTA+CGG | - | chr1_2:11430839-11430858 | None:intergenic | 35.0% |
| ! | AAGTGCTTTTCCTTGAAGAT+TGG | + | chr1_2:11430844-11430863 | Msa0055960:intron | 35.0% |
| TTTCGAATCTCCAATCTTCA+AGG | - | chr1_2:11430857-11430876 | None:intergenic | 35.0% | |
| AGTTTCAGCTTCTTTGGATT+CGG | + | chr1_2:11431055-11431074 | Msa0055960:intron | 35.0% | |
| ACACCTTTGATTAGATGTGT+CGG | + | chr1_2:11431382-11431401 | Msa0055960:intron | 35.0% | |
| !! | ATTGCTATAAGGGTATCAAG+AGG | + | chr1_2:11431423-11431442 | Msa0055960:intron | 35.0% |
| TTGTCTTTAGTAGTGATCCA+TGG | + | chr1_2:11431469-11431488 | Msa0055960:intron | 35.0% | |
| TTAAGTTTCTCACCCCATAT+GGG | - | chr1_2:11431577-11431596 | None:intergenic | 35.0% | |
| ATTAAGTTTCTCACCCCATA+TGG | - | chr1_2:11431578-11431597 | None:intergenic | 35.0% | |
| TGAATAGTCTCACAAGTGTT+TGG | + | chr1_2:11431714-11431733 | Msa0055960:intron | 35.0% | |
| GAATAGTCTCACAAGTGTTT+GGG | + | chr1_2:11431715-11431734 | Msa0055960:intron | 35.0% | |
| CTTAAGTAAGCTAGTTCAAC+TGG | + | chr1_2:11431742-11431761 | Msa0055960:intron | 35.0% | |
| !!! | CTCATGGTTTTGAATTGTTG+TGG | + | chr1_2:11431790-11431809 | Msa0055960:intron | 35.0% |
| CAGAATTCTTGCAAAAACTG+CGG | - | chr1_2:11431872-11431891 | None:intergenic | 35.0% | |
| ATGACTCAAAATTCTAGACC+TGG | + | chr1_2:11431899-11431918 | Msa0055960:intron | 35.0% | |
| TTTACAACACAAACCACTAG+AGG | - | chr1_2:11431943-11431962 | None:intergenic | 35.0% | |
| AGGTCAATCATCTATGTAAC+TGG | - | chr1_2:11431993-11432012 | None:intergenic | 35.0% | |
| AGCATAAGCATTCTACAACT+GGG | - | chr1_2:11432144-11432163 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGCTTCCTGCAGT+TGG | - | chr1_2:11432248-11432267 | None:intergenic | 35.0% |
| ! | GCTCTTGATTTTTGTGCAGA+TGG | - | chr1_2:11430595-11430614 | None:intergenic | 40.0% |
| ATCTATCTGGTGTTTCGTAC+CGG | - | chr1_2:11430646-11430665 | None:intergenic | 40.0% | |
| GATTATCCGTTAATGGTGAC+AGG | - | chr1_2:11430679-11430698 | None:intergenic | 40.0% | |
| TTGCGAAGTGATATTCGAGA+GGG | - | chr1_2:11430744-11430763 | None:intergenic | 40.0% | |
| GAACTTTCAACTCTTCACGA+CGG | - | chr1_2:11430909-11430928 | None:intergenic | 40.0% | |
| TCTGTCAGTTTCAGCTTCTT+TGG | + | chr1_2:11431049-11431068 | Msa0055960:intron | 40.0% | |
| !! | TTATGTTTAGGAGGCGTTTG+AGG | + | chr1_2:11431292-11431311 | Msa0055960:intron | 40.0% |
| !! | TATGTTTAGGAGGCGTTTGA+GGG | + | chr1_2:11431293-11431312 | Msa0055960:intron | 40.0% |
| TCACCGACACATCTAATCAA+AGG | - | chr1_2:11431388-11431407 | None:intergenic | 40.0% | |
| !! | ATAAGGGTATCAAGAGGTCT+TGG | + | chr1_2:11431429-11431448 | Msa0055960:intron | 40.0% |
| CAAGCTAATCAATGACACCA+TGG | - | chr1_2:11431489-11431508 | None:intergenic | 40.0% | |
| TAAGCCCTTACCATGATAAG+CGG | + | chr1_2:11431598-11431617 | Msa0055960:intron | 40.0% | |
| ACAACCGCTTATCATGGTAA+GGG | - | chr1_2:11431605-11431624 | None:intergenic | 40.0% | |
| TATAGGACAACCGCTTATCA+TGG | - | chr1_2:11431611-11431630 | None:intergenic | 40.0% | |
| TAGGTAGAGAAGTCTTTCAC+AGG | + | chr1_2:11432097-11432116 | Msa0055960:intron | 40.0% | |
| AGGTAGAGAAGTCTTTCACA+GGG | + | chr1_2:11432098-11432117 | Msa0055960:intron | 40.0% | |
| ! | ACTGGGTAGTAGTTCTACTT+CGG | - | chr1_2:11432127-11432146 | None:intergenic | 40.0% |
| CAGCATAAGCATTCTACAAC+TGG | - | chr1_2:11432145-11432164 | None:intergenic | 40.0% | |
| !! | ACAAAATTGCTGGTGCTGTT+TGG | - | chr1_2:11432206-11432225 | None:intergenic | 40.0% |
| CAACTGCAGAAATACAGATG+GGG | - | chr1_2:11432292-11432311 | None:intergenic | 40.0% | |
| GCAACTGCAGAAATACAGAT+GGG | - | chr1_2:11432293-11432312 | None:intergenic | 40.0% | |
| TGCAACTGCAGAAATACAGA+TGG | - | chr1_2:11432294-11432313 | None:intergenic | 40.0% | |
| !! | CTGTCTTATTTCGTCAAGCT+TGG | + | chr1_2:11432360-11432379 | Msa0055960:CDS | 40.0% |
| ! | GCTCTTGATTTTTGTGCAGA+TGG | - | chr1_2:11430595-11430614 | None:intergenic | 40.0% |
| ATCTATCTGGTGTTTCGTAC+CGG | - | chr1_2:11430646-11430665 | None:intergenic | 40.0% | |
| GATTATCCGTTAATGGTGAC+AGG | - | chr1_2:11430679-11430698 | None:intergenic | 40.0% | |
| TTGCGAAGTGATATTCGAGA+GGG | - | chr1_2:11430744-11430763 | None:intergenic | 40.0% | |
| GAACTTTCAACTCTTCACGA+CGG | - | chr1_2:11430909-11430928 | None:intergenic | 40.0% | |
| TCTGTCAGTTTCAGCTTCTT+TGG | + | chr1_2:11431049-11431068 | Msa0055960:intron | 40.0% | |
| !! | TTATGTTTAGGAGGCGTTTG+AGG | + | chr1_2:11431292-11431311 | Msa0055960:intron | 40.0% |
| !! | TATGTTTAGGAGGCGTTTGA+GGG | + | chr1_2:11431293-11431312 | Msa0055960:intron | 40.0% |
| TCACCGACACATCTAATCAA+AGG | - | chr1_2:11431388-11431407 | None:intergenic | 40.0% | |
| !! | ATAAGGGTATCAAGAGGTCT+TGG | + | chr1_2:11431429-11431448 | Msa0055960:intron | 40.0% |
| CAAGCTAATCAATGACACCA+TGG | - | chr1_2:11431489-11431508 | None:intergenic | 40.0% | |
| TAAGCCCTTACCATGATAAG+CGG | + | chr1_2:11431598-11431617 | Msa0055960:intron | 40.0% | |
| ACAACCGCTTATCATGGTAA+GGG | - | chr1_2:11431605-11431624 | None:intergenic | 40.0% | |
| TATAGGACAACCGCTTATCA+TGG | - | chr1_2:11431611-11431630 | None:intergenic | 40.0% | |
| TAGGTAGAGAAGTCTTTCAC+AGG | + | chr1_2:11432097-11432116 | Msa0055960:intron | 40.0% | |
| AGGTAGAGAAGTCTTTCACA+GGG | + | chr1_2:11432098-11432117 | Msa0055960:intron | 40.0% | |
| ! | ACTGGGTAGTAGTTCTACTT+CGG | - | chr1_2:11432127-11432146 | None:intergenic | 40.0% |
| CAGCATAAGCATTCTACAAC+TGG | - | chr1_2:11432145-11432164 | None:intergenic | 40.0% | |
| !! | ACAAAATTGCTGGTGCTGTT+TGG | - | chr1_2:11432206-11432225 | None:intergenic | 40.0% |
| CAACTGCAGAAATACAGATG+GGG | - | chr1_2:11432292-11432311 | None:intergenic | 40.0% | |
| GCAACTGCAGAAATACAGAT+GGG | - | chr1_2:11432293-11432312 | None:intergenic | 40.0% | |
| TGCAACTGCAGAAATACAGA+TGG | - | chr1_2:11432294-11432313 | None:intergenic | 40.0% | |
| !! | CTGTCTTATTTCGTCAAGCT+TGG | + | chr1_2:11432360-11432379 | Msa0055960:CDS | 40.0% |
| TCCACGTCATCCAAATGATC+CGG | + | chr1_2:11430624-11430643 | Msa0055960:CDS | 45.0% | |
| GTGTTTCGTACCGGATCATT+TGG | - | chr1_2:11430637-11430656 | None:intergenic | 45.0% | |
| TCTCACCCTGTCACCATTAA+CGG | + | chr1_2:11430670-11430689 | Msa0055960:intron | 45.0% | |
| GTTGCGAAGTGATATTCGAG+AGG | - | chr1_2:11430745-11430764 | None:intergenic | 45.0% | |
| ! | GGATTCGGTTCTGTTGTGAT+AGG | + | chr1_2:11431070-11431089 | Msa0055960:intron | 45.0% |
| ACATGAATCAGTGTCGTGTC+TGG | - | chr1_2:11431348-11431367 | None:intergenic | 45.0% | |
| GGTATCAAGAGGTCTTGGTT+TGG | + | chr1_2:11431434-11431453 | Msa0055960:intron | 45.0% | |
| !! | ATCAAGAGGTCTTGGTTTGG+AGG | + | chr1_2:11431437-11431456 | Msa0055960:intron | 45.0% |
| GACAACCGCTTATCATGGTA+AGG | - | chr1_2:11431606-11431625 | None:intergenic | 45.0% | |
| TTTGATCCATCTCCAACTGC+AGG | + | chr1_2:11432233-11432252 | Msa0055960:CDS | 45.0% | |
| !! | ATGGGGAAGGCATTAAAAGG+AGG | - | chr1_2:11432275-11432294 | None:intergenic | 45.0% |
| !! | CAGATGGGGAAGGCATTAAA+AGG | - | chr1_2:11432278-11432297 | None:intergenic | 45.0% |
| TGCAGAAATACAGATGGGGA+AGG | - | chr1_2:11432288-11432307 | None:intergenic | 45.0% | |
| CTTGACGAAATAAGACAGCG+TGG | - | chr1_2:11432358-11432377 | None:intergenic | 45.0% | |
| TCCACGTCATCCAAATGATC+CGG | + | chr1_2:11430624-11430643 | Msa0055960:CDS | 45.0% | |
| GTGTTTCGTACCGGATCATT+TGG | - | chr1_2:11430637-11430656 | None:intergenic | 45.0% | |
| TCTCACCCTGTCACCATTAA+CGG | + | chr1_2:11430670-11430689 | Msa0055960:intron | 45.0% | |
| GTTGCGAAGTGATATTCGAG+AGG | - | chr1_2:11430745-11430764 | None:intergenic | 45.0% | |
| ! | GGATTCGGTTCTGTTGTGAT+AGG | + | chr1_2:11431070-11431089 | Msa0055960:intron | 45.0% |
| ACATGAATCAGTGTCGTGTC+TGG | - | chr1_2:11431348-11431367 | None:intergenic | 45.0% | |
| GGTATCAAGAGGTCTTGGTT+TGG | + | chr1_2:11431434-11431453 | Msa0055960:intron | 45.0% | |
| !! | ATCAAGAGGTCTTGGTTTGG+AGG | + | chr1_2:11431437-11431456 | Msa0055960:intron | 45.0% |
| GACAACCGCTTATCATGGTA+AGG | - | chr1_2:11431606-11431625 | None:intergenic | 45.0% | |
| TTTGATCCATCTCCAACTGC+AGG | + | chr1_2:11432233-11432252 | Msa0055960:CDS | 45.0% | |
| !! | ATGGGGAAGGCATTAAAAGG+AGG | - | chr1_2:11432275-11432294 | None:intergenic | 45.0% |
| !! | CAGATGGGGAAGGCATTAAA+AGG | - | chr1_2:11432278-11432297 | None:intergenic | 45.0% |
| TGCAGAAATACAGATGGGGA+AGG | - | chr1_2:11432288-11432307 | None:intergenic | 45.0% | |
| CTTGACGAAATAAGACAGCG+TGG | - | chr1_2:11432358-11432377 | None:intergenic | 45.0% | |
| ACCGGATCATTTGGATGACG+TGG | - | chr1_2:11430628-11430647 | None:intergenic | 50.0% | |
| GTCGTGTCTGGTGTATCTGT+CGG | - | chr1_2:11431336-11431355 | None:intergenic | 50.0% | |
| TAGAGGCCTGTGATAGGAAC+AGG | - | chr1_2:11431926-11431945 | None:intergenic | 50.0% | |
| TTCCTATCACAGGCCTCTAG+TGG | + | chr1_2:11431927-11431946 | Msa0055960:intron | 50.0% | |
| AACCACTAGAGGCCTGTGAT+AGG | - | chr1_2:11431932-11431951 | None:intergenic | 50.0% | |
| TTGCTTCCTGCAGTTGGAGA+TGG | - | chr1_2:11432242-11432261 | None:intergenic | 50.0% | |
| ACCGGATCATTTGGATGACG+TGG | - | chr1_2:11430628-11430647 | None:intergenic | 50.0% | |
| GTCGTGTCTGGTGTATCTGT+CGG | - | chr1_2:11431336-11431355 | None:intergenic | 50.0% | |
| TAGAGGCCTGTGATAGGAAC+AGG | - | chr1_2:11431926-11431945 | None:intergenic | 50.0% | |
| TTCCTATCACAGGCCTCTAG+TGG | + | chr1_2:11431927-11431946 | Msa0055960:intron | 50.0% | |
| AACCACTAGAGGCCTGTGAT+AGG | - | chr1_2:11431932-11431951 | None:intergenic | 50.0% | |
| TTGCTTCCTGCAGTTGGAGA+TGG | - | chr1_2:11432242-11432261 | None:intergenic | 50.0% | |
| !! | GAGGTCTTGGTTTGGAGGCA+AGG | + | chr1_2:11431442-11431461 | Msa0055960:intron | 55.0% |
| GCGGTGACTGTGTGACATCA+AGG | - | chr1_2:11431853-11431872 | None:intergenic | 55.0% | |
| CCTGTGATAGGAACAGGACC+AGG | - | chr1_2:11431920-11431939 | None:intergenic | 55.0% | |
| CCTGGTCCTGTTCCTATCAC+AGG | + | chr1_2:11431917-11431936 | Msa0055960:intron | 55.0% | |
| !! | GAGGTCTTGGTTTGGAGGCA+AGG | + | chr1_2:11431442-11431461 | Msa0055960:intron | 55.0% |
| GCGGTGACTGTGTGACATCA+AGG | - | chr1_2:11431853-11431872 | None:intergenic | 55.0% | |
| CCTGTGATAGGAACAGGACC+AGG | - | chr1_2:11431920-11431939 | None:intergenic | 55.0% | |
| CCTGGTCCTGTTCCTATCAC+AGG | + | chr1_2:11431917-11431936 | Msa0055960:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 11430577 | 11432395 | 11430577 | ID=Msa0055960;Name=Msa0055960 |
| chr1_2 | mRNA | 11430577 | 11432395 | 11430577 | ID=Msa0055960-mRNA-1;Parent=Msa0055960;Name=Msa0055960-mRNA-1;_AED=0.54;_eAED=1.00;_QI=0|0|0|0.66|1|1|3|0|143 |
| chr1_2 | exon | 11430577 | 11430645 | 11430577 | ID=Msa0055960-mRNA-1:exon:4345;Parent=Msa0055960-mRNA-1 |
| chr1_2 | exon | 11430862 | 11430928 | 11430862 | ID=Msa0055960-mRNA-1:exon:4346;Parent=Msa0055960-mRNA-1 |
| chr1_2 | exon | 11432100 | 11432395 | 11432100 | ID=Msa0055960-mRNA-1:exon:4347;Parent=Msa0055960-mRNA-1 |
| chr1_2 | CDS | 11430577 | 11430645 | 11430577 | ID=Msa0055960-mRNA-1:cds;Parent=Msa0055960-mRNA-1 |
| chr1_2 | CDS | 11430862 | 11430928 | 11430862 | ID=Msa0055960-mRNA-1:cds;Parent=Msa0055960-mRNA-1 |
| chr1_2 | CDS | 11432100 | 11432395 | 11432100 | ID=Msa0055960-mRNA-1:cds;Parent=Msa0055960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
