Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462570 | XP_013458199.1 | 93.713 | 668 | 41 | 1 | 7 | 673 | 1 | 668 | 0.0 | 1300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462570 | sp|Q43077|AMO_PEA | 87.092 | 674 | 86 | 1 | 1 | 673 | 1 | 674 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462570 | A0A072V290 | 93.713 | 668 | 41 | 1 | 7 | 673 | 1 | 668 | 0.0 | 1300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1275820 | Msa1462570 | 0.804182 | 2.442604e-49 | -8.615850e-47 |
| Msa0375890 | Msa1462570 | 0.807458 | 5.005433e-50 | -8.615850e-47 |
| Msa0415320 | Msa1462570 | 0.800042 | 1.734716e-48 | -8.615850e-47 |
| Msa0523000 | Msa1462570 | 0.804335 | 2.269306e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462570 | MtrunA17_Chr4g0065961 | 93.713 | 668 | 41 | 1 | 7 | 673 | 1 | 668 | 0.0 | 1300 |
| Msa1462570 | MtrunA17_Chr4g0065981 | 85.481 | 675 | 94 | 3 | 1 | 672 | 1 | 674 | 0.0 | 1213 |
| Msa1462570 | MtrunA17_Chr4g0065991 | 86.364 | 506 | 69 | 0 | 166 | 671 | 1 | 506 | 0.0 | 934 |
| Msa1462570 | MtrunA17_Chr1g0205571 | 56.889 | 675 | 277 | 6 | 7 | 672 | 3 | 672 | 0.0 | 797 |
| Msa1462570 | MtrunA17_Chr4g0023331 | 92.421 | 409 | 31 | 0 | 263 | 671 | 5 | 413 | 0.0 | 796 |
| Msa1462570 | MtrunA17_Chr1g0205541 | 45.921 | 662 | 344 | 4 | 1 | 658 | 7 | 658 | 0.0 | 644 |
| Msa1462570 | MtrunA17_Chr3g0119641 | 44.410 | 644 | 336 | 12 | 31 | 659 | 77 | 713 | 0.0 | 572 |
| Msa1462570 | MtrunA17_Chr4g0023321 | 82.824 | 262 | 45 | 0 | 1 | 262 | 1 | 262 | 3.91e-161 | 463 |
| Msa1462570 | MtrunA17_Chr3g0117081 | 27.965 | 683 | 427 | 20 | 27 | 658 | 68 | 736 | 4.39e-79 | 267 |
| Msa1462570 | MtrunA17_Chr5g0412801 | 27.515 | 676 | 430 | 18 | 32 | 658 | 44 | 708 | 7.15e-75 | 255 |
| Msa1462570 | MtrunA17_Chr8g0368011 | 26.600 | 500 | 311 | 14 | 24 | 479 | 74 | 561 | 5.57e-44 | 167 |
| Msa1462570 | MtrunA17_Chr8g0368021 | 37.063 | 143 | 87 | 3 | 527 | 666 | 21 | 163 | 3.80e-23 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462570 | AT1G31690.1 | 52.623 | 648 | 299 | 6 | 32 | 672 | 27 | 673 | 0.0 | 706 |
| Msa1462570 | AT1G31710.1 | 52.886 | 641 | 289 | 8 | 31 | 660 | 27 | 665 | 0.0 | 702 |
| Msa1462570 | AT1G31670.1 | 50.847 | 649 | 293 | 9 | 32 | 672 | 107 | 737 | 0.0 | 660 |
| Msa1462570 | AT4G14940.1 | 46.177 | 654 | 336 | 5 | 13 | 658 | 4 | 649 | 0.0 | 627 |
| Msa1462570 | AT4G12290.1 | 43.524 | 664 | 342 | 14 | 31 | 671 | 81 | 734 | 0.0 | 564 |
| Msa1462570 | AT1G62810.1 | 43.077 | 650 | 359 | 9 | 31 | 671 | 59 | 706 | 0.0 | 559 |
| Msa1462570 | AT3G43670.1 | 43.505 | 639 | 346 | 10 | 31 | 658 | 40 | 674 | 0.0 | 550 |
| Msa1462570 | AT4G12290.2 | 42.263 | 601 | 314 | 14 | 31 | 608 | 81 | 671 | 3.95e-163 | 484 |
| Msa1462570 | AT4G12280.1 | 50.000 | 292 | 138 | 2 | 388 | 671 | 2 | 293 | 2.45e-98 | 304 |
| Msa1462570 | AT4G12270.1 | 37.401 | 377 | 205 | 12 | 31 | 383 | 83 | 452 | 1.44e-77 | 255 |
| Msa1462570 | AT2G42490.1 | 27.876 | 678 | 426 | 19 | 31 | 658 | 79 | 743 | 1.90e-75 | 258 |
Find 162 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACTCTTGTTTGGTTAA+AGG | 0.191085 | tig0042400:+8302 | None:intergenic |
| TCACTTCAGTTCTAGATTCT+TGG | 0.216706 | tig0042400:+5848 | None:intergenic |
| ATCGGGTATACTGGAAATTA+AGG | 0.218651 | tig0042400:-4492 | Msa1462570:CDS |
| CATTTACTAATTATAATGTT+TGG | 0.263224 | tig0042400:-4076 | Msa1462570:CDS |
| GACAATGTTCATAAGGGATA+TGG | 0.263734 | tig0042400:-8062 | Msa1462570:CDS |
| TAAGCACACGAATGAGATTA+AGG | 0.274838 | tig0042400:-4459 | Msa1462570:CDS |
| GTGCTCAATAGGGGCATTAT+TGG | 0.282430 | tig0042400:+3774 | None:intergenic |
| GGGAGAACTGTATGGTAAAT+TGG | 0.301611 | tig0042400:-4438 | Msa1462570:CDS |
| CTGTTATTTAAGGGCACCTT+GGG | 0.302601 | tig0042400:-8488 | None:intergenic |
| TTAACAATTATTGTTGATCT+TGG | 0.304465 | tig0042400:-7813 | Msa1462570:CDS |
| ACTCAAATCCAGTGCTCAAT+AGG | 0.307647 | tig0042400:+3763 | None:intergenic |
| GAAACTCTTGTTTGGTTAAA+GGG | 0.311803 | tig0042400:+8303 | None:intergenic |
| GGTTTGTTCTAGTTTCACTA+TGG | 0.316590 | tig0042400:-7931 | Msa1462570:CDS |
| ATAATTGTTAATCCACTAAT+AGG | 0.317659 | tig0042400:+7825 | None:intergenic |
| TTGAGGTGGGATATTTGTTA+TGG | 0.322352 | tig0042400:+8261 | None:intergenic |
| CTAGTAAGGCTATGCTGTTT+TGG | 0.323351 | tig0042400:+7690 | None:intergenic |
| TATCGGATACCGTTTGATTC+CGG | 0.337949 | tig0042400:-4153 | Msa1462570:CDS |
| AGTTTCACTATGGGGTGGTT+TGG | 0.345556 | tig0042400:-7921 | Msa1462570:CDS |
| ATTTGTTATGGACTAGGGTT+TGG | 0.352768 | tig0042400:+8273 | None:intergenic |
| GTTCAAAGAGAAAGAGTTAC+TGG | 0.352872 | tig0042400:-4289 | Msa1462570:CDS |
| TTGCATTCTTCAAGAGTCTT+GGG | 0.354301 | tig0042400:+6043 | None:intergenic |
| ATTTACTAATTATAATGTTT+GGG | 0.363115 | tig0042400:-4075 | Msa1462570:CDS |
| TCAAAACAAAACCCACCATT+TGG | 0.364905 | tig0042400:-7714 | Msa1462570:CDS |
| AAAATTCTTCTGTTGGATCT+TGG | 0.365783 | tig0042400:+6193 | None:intergenic |
| GAATCAAACGGTATCCGATA+TGG | 0.370989 | tig0042400:+4156 | None:intergenic |
| AGCTGAGAACACTGAATATC+AGG | 0.371024 | tig0042400:-7739 | Msa1462570:CDS |
| TGGGATATTTGTTATGGACT+AGG | 0.372057 | tig0042400:+8267 | None:intergenic |
| ATGAGATAGTAATTGATATA+AGG | 0.372118 | tig0042400:-8103 | Msa1462570:CDS |
| GATTCCGGTGAGTTTGGATT+TGG | 0.375574 | tig0042400:-6153 | Msa1462570:CDS |
| CTCAAATCCAGTGCTCAATA+GGG | 0.380751 | tig0042400:+3764 | None:intergenic |
| GTTTGTTCTAGTTTCACTAT+GGG | 0.385285 | tig0042400:-7930 | Msa1462570:CDS |
| AGGGTAGCTTTCCACTATAT+TGG | 0.387861 | tig0042400:-8233 | Msa1462570:CDS |
| GATTGCACTATCGGGTATAC+TGG | 0.390148 | tig0042400:-4501 | Msa1462570:CDS |
| TGTTCCTCAACGGATAAGAT+AGG | 0.393569 | tig0042400:+8035 | None:intergenic |
| AGTGGATGAGCTGGAATTGC+CGG | 0.394639 | tig0042400:+4134 | None:intergenic |
| TGTCTCTGACAATGTTCATA+AGG | 0.400670 | tig0042400:-8069 | Msa1462570:CDS |
| TATGTGGCGTCATACTGAAA+TGG | 0.400863 | tig0042400:-5992 | Msa1462570:CDS |
| CCAGGCCATGCAACATCTCT+TGG | 0.403230 | tig0042400:+3690 | None:intergenic |
| GACAGTTTGAAACTCTTGTT+TGG | 0.403538 | tig0042400:+8295 | None:intergenic |
| TTGAAGATATAATCTTTGTC+GGG | 0.403769 | tig0042400:+8200 | None:intergenic |
| AGATCAATGGCCATAGTGTT+AGG | 0.409618 | tig0042400:-7641 | Msa1462570:intron |
| TTAAAGTAAAATTCTTCTGT+TGG | 0.413488 | tig0042400:+6186 | None:intergenic |
| TTGGAGAAGAAAAGAGTAGT+AGG | 0.414760 | tig0042400:-7902 | Msa1462570:CDS |
| AATATCCCACCTCAAAGAAC+AGG | 0.415115 | tig0042400:-8253 | Msa1462570:CDS |
| TTCCTCTCAAAGAAATTAGT+TGG | 0.418394 | tig0042400:+3735 | None:intergenic |
| ATTGCATTCTTCAAGAGTCT+TGG | 0.422659 | tig0042400:+6042 | None:intergenic |
| GTTTATTCAGTTGGGCCAAT+TGG | 0.423987 | tig0042400:-6344 | Msa1462570:intron |
| ATTGGGAAATCTTCTTGTGC+TGG | 0.428214 | tig0042400:+3792 | None:intergenic |
| TAACACTATGGCCATTGATC+TGG | 0.429187 | tig0042400:+7643 | None:intergenic |
| ACTGCGATCGGAAACCATAT+CGG | 0.429675 | tig0042400:-4170 | Msa1462570:CDS |
| GAGATGACACATTAGCTGTT+TGG | 0.436337 | tig0042400:-3992 | Msa1462570:CDS |
| TGCTCAATAGGGGCATTATT+GGG | 0.437529 | tig0042400:+3775 | None:intergenic |
| CCAAGAGATGTTGCATGGCC+TGG | 0.439050 | tig0042400:-3690 | Msa1462570:CDS |
| GTCTCTGACAATGTTCATAA+GGG | 0.439897 | tig0042400:-8068 | Msa1462570:CDS |
| TTTGTCGTTGCTATCATCAA+TGG | 0.440663 | tig0042400:-8134 | Msa1462570:CDS |
| TACTATACAGATTGCACTAT+CGG | 0.442015 | tig0042400:-4510 | Msa1462570:intron |
| GTGTATGTTTGTGTGTGAAA+TGG | 0.442858 | tig0042400:+8459 | None:intergenic |
| TTTGAAGATATAATCTTTGT+CGG | 0.446983 | tig0042400:+8199 | None:intergenic |
| AATACATACGGAGGGCTTGA+TGG | 0.447110 | tig0042400:+5750 | None:intergenic |
| GGGATATTTGTTATGGACTA+GGG | 0.447268 | tig0042400:+8268 | None:intergenic |
| GAAAGCTACCCTGTTCTTTG+AGG | 0.448413 | tig0042400:+8244 | None:intergenic |
| TCTTCTGTTGGATCTTGGTA+TGG | 0.449968 | tig0042400:+6198 | None:intergenic |
| AATCTTTGTCGGGGTCATCT+AGG | 0.454398 | tig0042400:+8210 | None:intergenic |
| AGAGAAAAGAGCAAGTTTCA+TGG | 0.458128 | tig0042400:+8391 | None:intergenic |
| GCCAATTGGAAGTTTCATAT+AGG | 0.459334 | tig0042400:-6330 | Msa1462570:CDS |
| ATGTGGCGTCATACTGAAAT+GGG | 0.463018 | tig0042400:-5991 | Msa1462570:CDS |
| CTCGAAGAGTATTATACAAA+GGG | 0.463648 | tig0042400:-6242 | Msa1462570:CDS |
| AACAATATGGTAGTATTATG+TGG | 0.465492 | tig0042400:-6008 | Msa1462570:CDS |
| AGCAAGTTTCATGGTGGTGG+TGG | 0.466982 | tig0042400:+8400 | None:intergenic |
| TTCACTGAATCAATGAAAGC+AGG | 0.467218 | tig0042400:+7981 | None:intergenic |
| ACATTACGCACCTAACACTA+TGG | 0.468134 | tig0042400:+7631 | None:intergenic |
| AACAGACGGACATTTATTCA+TGG | 0.473551 | tig0042400:+3570 | None:intergenic |
| AGCTACCCTGTTCTTTGAGG+TGG | 0.474719 | tig0042400:+8247 | None:intergenic |
| TATTTGTGGGTAATCATCTT+CGG | 0.474849 | tig0042400:+4106 | None:intergenic |
| TCCTATATGAAACTTCCAAT+TGG | 0.475368 | tig0042400:+6329 | None:intergenic |
| CTTCTTGTGCTGGAACATGA+TGG | 0.485714 | tig0042400:+3802 | None:intergenic |
| AAGATTCTTACAAATTCCTC+AGG | 0.488560 | tig0042400:+5964 | None:intergenic |
| GTAAATGCACCACGTATTTG+TGG | 0.493663 | tig0042400:+4092 | None:intergenic |
| AAGCACACGAATGAGATTAA+GGG | 0.505331 | tig0042400:-4458 | Msa1462570:CDS |
| TTAATCACGACTAGTTCAGC+TGG | 0.511347 | tig0042400:+4206 | None:intergenic |
| TATAGCTAGCTTCACTAGCT+TGG | 0.513262 | tig0042400:+8437 | None:intergenic |
| GAGGAACAAGGTCTTGCCAT+AGG | 0.515165 | tig0042400:-8020 | Msa1462570:CDS |
| GAGATTAAGGGAGAACTGTA+TGG | 0.515182 | tig0042400:-4446 | Msa1462570:CDS |
| ATATATGTGAGGCCTATTAG+TGG | 0.515563 | tig0042400:-7837 | Msa1462570:CDS |
| TCGGGTATACTGGAAATTAA+GGG | 0.515612 | tig0042400:-4491 | Msa1462570:CDS |
| TAAATGCACCACGTATTTGT+GGG | 0.516198 | tig0042400:+4093 | None:intergenic |
| CTTGAGGTTGATGACTAGTA+AGG | 0.516577 | tig0042400:+7676 | None:intergenic |
| CTGGAATTGCCGGAATCAAA+CGG | 0.525335 | tig0042400:+4144 | None:intergenic |
| ACTTCCATCAGTGATTCTTA+CGG | 0.526719 | tig0042400:+4310 | None:intergenic |
| TCGGTTAGAAGTGGATGAGC+TGG | 0.531691 | tig0042400:+4125 | None:intergenic |
| ACTATACAGATTGCACTATC+GGG | 0.533749 | tig0042400:-4509 | Msa1462570:intron |
| TCTGTTATTTAAGGGCACCT+TGG | 0.534067 | tig0042400:-8489 | None:intergenic |
| GGCCAACTAATTTCTTTGAG+AGG | 0.535093 | tig0042400:-3737 | Msa1462570:CDS |
| GATTTACGACGGATTACTAC+AGG | 0.535869 | tig0042400:+8158 | None:intergenic |
| GGTCCTGGCTTCCAGATCAA+TGG | 0.536411 | tig0042400:-7654 | Msa1462570:CDS |
| GGTCATCTAGGCCAATATAG+TGG | 0.536518 | tig0042400:+8222 | None:intergenic |
| ATTGTGATGTGGCATGTAGT+TGG | 0.538927 | tig0042400:-3828 | Msa1462570:CDS |
| AAGAGCAAGTTTCATGGTGG+TGG | 0.539834 | tig0042400:+8397 | None:intergenic |
| TGGCCATTGATCTGGAAGCC+AGG | 0.539942 | tig0042400:+7651 | None:intergenic |
| ATGAAAGCAGGATATTTAAG+TGG | 0.541998 | tig0042400:+7993 | None:intergenic |
| ACGACTAGTTCAGCTGGGGC+AGG | 0.542349 | tig0042400:+4212 | None:intergenic |
| AGTCATCAACCTCAAGGTCC+TGG | 0.545379 | tig0042400:-7669 | Msa1462570:CDS |
| ATATTTAAGTGGAAGCCCTA+TGG | 0.549001 | tig0042400:+8004 | None:intergenic |
| GTTCTAGTTTCACTATGGGG+TGG | 0.551474 | tig0042400:-7926 | Msa1462570:CDS |
| GTTCCTCAACGGATAAGATA+GGG | 0.551481 | tig0042400:+8036 | None:intergenic |
| AGGAACAAGGTCTTGCCATA+GGG | 0.557952 | tig0042400:-8019 | Msa1462570:CDS |
| TGTGGTGGACAATCACGGTT+GGG | 0.559487 | tig0042400:+6108 | None:intergenic |
| AGGTTTGAATCTCTCTGAGG+TGG | 0.562273 | tig0042400:-7952 | Msa1462570:CDS |
| TGAGCACTGGATTTGAGTTG+AGG | 0.563016 | tig0042400:-3758 | Msa1462570:CDS |
| GCTTTACAGAGACCACTGCT+TGG | 0.563172 | tig0042400:+8348 | None:intergenic |
| TTGGTGTCAGCAAACAGCAT+TGG | 0.564223 | tig0042400:-4419 | Msa1462570:CDS |
| GCTACCCTGTTCTTTGAGGT+GGG | 0.564691 | tig0042400:+8248 | None:intergenic |
| GATTGGGAGTTCAAAACAAG+TGG | 0.565272 | tig0042400:-5775 | Msa1462570:CDS |
| ATCTGGAAGCCAGGACCTTG+AGG | 0.566123 | tig0042400:+7660 | None:intergenic |
| TGCATTCTTCAAGAGTCTTG+GGG | 0.566653 | tig0042400:+6044 | None:intergenic |
| TGTTTGGTTAAAGGGTCAAG+TGG | 0.569696 | tig0042400:+8311 | None:intergenic |
| ATAATGCCCCTATTGAGCAC+TGG | 0.570188 | tig0042400:-3771 | Msa1462570:CDS |
| AGACCACTGCTTGGAAGTAG+AGG | 0.572715 | tig0042400:+8357 | None:intergenic |
| GTTTGGATTTGGTCTATCGA+CGG | 0.572719 | tig0042400:-6142 | Msa1462570:CDS |
| TTTCCCTATCTTATCCGTTG+AGG | 0.573772 | tig0042400:-8039 | Msa1462570:CDS |
| TAATCATCTTCGGTTAGAAG+TGG | 0.578903 | tig0042400:+4116 | None:intergenic |
| TCTCGAAGAGTATTATACAA+AGG | 0.582068 | tig0042400:-6243 | Msa1462570:CDS |
| AGTGCATGTAGAAATGATCA+TGG | 0.584457 | tig0042400:+4390 | None:intergenic |
| ATCTTATCCGTTGAGGAACA+AGG | 0.584887 | tig0042400:-8032 | Msa1462570:CDS |
| ATAGGATTTGATGTACGAGC+TGG | 0.588121 | tig0042400:-6312 | Msa1462570:CDS |
| TAATCACGACTAGTTCAGCT+GGG | 0.592233 | tig0042400:+4207 | None:intergenic |
| CTTTATGTTGATCATAGTCG+TGG | 0.592522 | tig0042400:-4014 | Msa1462570:CDS |
| GGCAAGACCTTGTTCCTCAA+CGG | 0.593633 | tig0042400:+8025 | None:intergenic |
| TCAAGTGGATGTTGACGCAA+TGG | 0.599243 | tig0042400:+8326 | None:intergenic |
| ACATATGTTCACTCTGATGA+TGG | 0.600351 | tig0042400:-6069 | Msa1462570:CDS |
| TTTGTTCTAGTTTCACTATG+GGG | 0.601441 | tig0042400:-7929 | Msa1462570:CDS |
| ATGTGGTGGACAATCACGGT+TGG | 0.602943 | tig0042400:+6107 | None:intergenic |
| TTTCTCCAAGAGATGTTGCA+TGG | 0.603395 | tig0042400:-3695 | Msa1462570:CDS |
| TCAAATCCAGTGCTCAATAG+GGG | 0.610262 | tig0042400:+3765 | None:intergenic |
| GATTGTTAGAACAGTAGTCA+CGG | 0.613697 | tig0042400:-5821 | Msa1462570:CDS |
| TACTGAAATGGGCATTCCTG+AGG | 0.615199 | tig0042400:-5980 | Msa1462570:CDS |
| TATTCAGTGTTCTCAGCTGT+AGG | 0.618708 | tig0042400:+7744 | None:intergenic |
| TAATAATAGTTGAAAACAGA+CGG | 0.620013 | tig0042400:+3556 | None:intergenic |
| AAAACCGTAAGAATCACTGA+TGG | 0.620978 | tig0042400:-4314 | Msa1462570:CDS |
| TTTAGCAATTTGAGTCTCAG+TGG | 0.621437 | tig0042400:+4265 | None:intergenic |
| TGAAGATATAATCTTTGTCG+GGG | 0.624760 | tig0042400:+8201 | None:intergenic |
| TAGACCAAATCCAAACTCAC+CGG | 0.629657 | tig0042400:+6149 | None:intergenic |
| GAATAGAGACATTGTGAACA+AGG | 0.629687 | tig0042400:-3853 | Msa1462570:CDS |
| CTTACTAGTCATCAACCTCA+AGG | 0.638559 | tig0042400:-7675 | Msa1462570:CDS |
| GTTAGAACAGTAGTCACGGT+GGG | 0.653164 | tig0042400:-5817 | Msa1462570:CDS |
| GAGCATGTGGTGGACAATCA+CGG | 0.660339 | tig0042400:+6103 | None:intergenic |
| ATTGATGATAGCAACGACAA+AGG | 0.669383 | tig0042400:+8136 | None:intergenic |
| GAGAGGTTTGAATCTCTCTG+AGG | 0.678705 | tig0042400:-7955 | Msa1462570:CDS |
| AATCCTCTACTTCCAAGCAG+TGG | 0.680607 | tig0042400:-8360 | Msa1462570:CDS |
| ATATCCCACCTCAAAGAACA+GGG | 0.680963 | tig0042400:-8252 | Msa1462570:CDS |
| TCAATGAATTGAGCATGTGG+TGG | 0.686158 | tig0042400:+6093 | None:intergenic |
| ATAGTGTTAATATATATGTG+AGG | 0.693232 | tig0042400:-7848 | Msa1462570:CDS |
| TGTTATTTAAGGGCACCTTG+GGG | 0.697423 | tig0042400:-8487 | None:intergenic |
| GATGATTACCCACAAATACG+TGG | 0.704266 | tig0042400:-4101 | Msa1462570:CDS |
| GTATCAATGAATTGAGCATG+TGG | 0.707455 | tig0042400:+6090 | None:intergenic |
| CAACGACAAAGGATTTACGA+CGG | 0.708733 | tig0042400:+8147 | None:intergenic |
| TGAACAAGGACATTGTGATG+TGG | 0.719496 | tig0042400:-3839 | Msa1462570:CDS |
| AATCACGACTAGTTCAGCTG+GGG | 0.723460 | tig0042400:+4208 | None:intergenic |
| TGTGAAATGGAAGCTCCCCA+AGG | 0.726391 | tig0042400:+8472 | None:intergenic |
| AAGCTAGCTATAGCTCACAA+TGG | 0.730641 | tig0042400:-8426 | Msa1462570:exon |
| GAAAAGAGCAAGTTTCATGG+TGG | 0.732765 | tig0042400:+8394 | None:intergenic |
| TGTTAGAACAGTAGTCACGG+TGG | 0.754103 | tig0042400:-5818 | Msa1462570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTTATATTAAAAT+TGG | - | tig0042400:4910-4929 | Msa1462570:intron | 0.0% |
| !!! | ATTTTTTCCTTTTTTTTTTT+AGG | + | tig0042400:4516-4535 | None:intergenic | 10.0% |
| !!! | TAATATAAATAAATTTTGCA+AGG | + | tig0042400:4906-4925 | None:intergenic | 10.0% |
| !!! | TTCAATATTAATAAATTTTG+TGG | - | tig0042400:5221-5240 | Msa1462570:intron | 10.0% |
| !!! | TCAATATTAATAAATTTTGT+GGG | - | tig0042400:5222-5241 | Msa1462570:intron | 10.0% |
| !! | TTTAAAAGTTTAATAAAAGT+TGG | - | tig0042400:5354-5373 | Msa1462570:intron | 10.0% |
| !! | TTAAAAGTTTAATAAAAGTT+GGG | - | tig0042400:5355-5374 | Msa1462570:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | tig0042400:6640-6659 | None:intergenic | 10.0% |
| !! | ATTATATTTGTGTATAAATT+TGG | - | tig0042400:6976-6995 | Msa1462570:intron | 10.0% |
| !!! | TTTTTTTCACTTTTATTTTT+TGG | - | tig0042400:7109-7128 | Msa1462570:intron | 10.0% |
| !! | ATTTACTAATTATAATGTTT+GGG | - | tig0042400:7939-7958 | Msa1462570:CDS | 10.0% |
| !!! | TTTTTTTTAGGAATAGAAAT+TGG | + | tig0042400:4504-4523 | None:intergenic | 15.0% |
| !! | TTCTATTCCTAAAAAAAAAA+AGG | - | tig0042400:4506-4525 | Msa1462570:intron | 15.0% |
| !!! | GTTATTAGTTCTTTTTTTTA+AGG | + | tig0042400:4588-4607 | None:intergenic | 15.0% |
| !!! | TATTATTACTTCTTTTTTCT+TGG | - | tig0042400:4849-4868 | Msa1462570:intron | 15.0% |
| !! | ATACACATATAAATGAAAAA+AGG | + | tig0042400:5124-5143 | None:intergenic | 15.0% |
| !!! | TGTTATATTTATTTTAGTGA+TGG | + | tig0042400:5192-5211 | None:intergenic | 15.0% |
| !!! | CAATATTAATAAATTTTGTG+GGG | - | tig0042400:5223-5242 | Msa1462570:intron | 15.0% |
| !! | GGGATTAAAATAAATTAAAA+AGG | - | tig0042400:5243-5262 | Msa1462570:intron | 15.0% |
| !!! | TATAATACTAAATAGTTTTG+TGG | - | tig0042400:5393-5412 | Msa1462570:intron | 15.0% |
| !! | ATACTTTAGTAAAAAAAGTA+TGG | - | tig0042400:6742-6761 | Msa1462570:intron | 15.0% |
| !!! | ATAAACTTGAGATTTTAAAA+TGG | + | tig0042400:6923-6942 | None:intergenic | 15.0% |
| !! | TTTAAGCTTAAAATTCATAT+TGG | + | tig0042400:7007-7026 | None:intergenic | 15.0% |
| !! | CATTTACTAATTATAATGTT+TGG | - | tig0042400:7938-7957 | Msa1462570:CDS | 15.0% |
| !! | TTATAATAGAACTGAAAAAT+GGG | - | tig0042400:7969-7988 | Msa1462570:CDS | 15.0% |
| !!! | AAGATCAATTTTATTTTTTG+TGG | - | tig0042400:8055-8074 | Msa1462570:CDS | 15.0% |
| !! | TTTGAAGATATAATCTTTGT+CGG | + | tig0042400:3818-3837 | None:intergenic | 20.0% |
| !! | ATGAGATAGTAATTGATATA+AGG | - | tig0042400:3911-3930 | Msa1462570:intron | 20.0% |
| !! | ATAGTGTTAATATATATGTG+AGG | - | tig0042400:4166-4185 | Msa1462570:CDS | 20.0% |
| !! | ATAATTGTTAATCCACTAAT+AGG | + | tig0042400:4192-4211 | None:intergenic | 20.0% |
| !! | TTAACAATTATTGTTGATCT+TGG | - | tig0042400:4201-4220 | Msa1462570:CDS | 20.0% |
| !!! | GTAATGTTCTTTTTCTTTTA+TGG | - | tig0042400:4399-4418 | Msa1462570:CDS | 20.0% |
| !!! | TTCTTTTTCTTTTATGGTAT+TGG | - | tig0042400:4405-4424 | Msa1462570:CDS | 20.0% |
| !! | AAAGAACTAATAACTACTAA+TGG | - | tig0042400:4594-4613 | Msa1462570:intron | 20.0% |
| !!! | ATCTGAAAGAGATATTTTTT+TGG | + | tig0042400:4757-4776 | None:intergenic | 20.0% |
| !! | GGACTAAGTATAAAAAAAAT+CGG | + | tig0042400:4885-4904 | None:intergenic | 20.0% |
| !! | ATAAATGAAAAAAGGTAGAA+AGG | + | tig0042400:5116-5135 | None:intergenic | 20.0% |
| !!! | TATATTTATTTTAGTGATGG+AGG | + | tig0042400:5189-5208 | None:intergenic | 20.0% |
| !! | GTGATATATTTACAAGTTAT+AGG | - | tig0042400:5279-5298 | Msa1462570:intron | 20.0% |
| !! | TTAAAGTAAAATTCTTCTGT+TGG | + | tig0042400:5831-5850 | None:intergenic | 20.0% |
| !!! | ATTTGTGTTTTTGAACAATA+TGG | - | tig0042400:5993-6012 | Msa1462570:CDS | 20.0% |
| !! | AATAAATTAATCGAGTTAGA+TGG | + | tig0042400:6084-6103 | None:intergenic | 20.0% |
| !! | TTTAATTAAATACATACGGA+GGG | + | tig0042400:6275-6294 | None:intergenic | 20.0% |
| !! | ATTTAATTAAATACATACGG+AGG | + | tig0042400:6276-6295 | None:intergenic | 20.0% |
| !!! | TGACTGATCTATTTTAATTT+TGG | - | tig0042400:6431-6450 | Msa1462570:intron | 20.0% |
| !! | ATCATATATTATGCATGTAA+GGG | + | tig0042400:6861-6880 | None:intergenic | 20.0% |
| !! | TATCATATATTATGCATGTA+AGG | + | tig0042400:6862-6881 | None:intergenic | 20.0% |
| !!! | TCTTTTGTAACAATTGAAAA+TGG | - | tig0042400:7159-7178 | Msa1462570:intron | 20.0% |
| !!! | TATCTTGATTTTGATATTGA+CGG | - | tig0042400:7646-7665 | Msa1462570:CDS | 20.0% |
| !!! | CATTTTTCAGTTCTATTATA+AGG | + | tig0042400:7970-7989 | None:intergenic | 20.0% |
| !! | CTTATAATAGAACTGAAAAA+TGG | - | tig0042400:7968-7987 | Msa1462570:CDS | 20.0% |
| !! | ATAAAATTGATCTTACTGTT+TGG | + | tig0042400:8049-8068 | None:intergenic | 20.0% |
| !! | TAATAATAGTTGAAAACAGA+CGG | + | tig0042400:8461-8480 | None:intergenic | 20.0% |
| ! | TTGAAGATATAATCTTTGTC+GGG | + | tig0042400:3817-3836 | None:intergenic | 25.0% |
| ! | CTATTTACGAATTCCTAATA+AGG | + | tig0042400:4434-4453 | None:intergenic | 25.0% |
| ! | ATTCGTAAATAGTGTATTGA+TGG | - | tig0042400:4442-4461 | Msa1462570:CDS | 25.0% |
| !! | TTCGTAAATAGTGTATTGAT+GGG | - | tig0042400:4443-4462 | Msa1462570:CDS | 25.0% |
| !!! | TGAAAGAGATATTTTTTTGG+TGG | + | tig0042400:4754-4773 | None:intergenic | 25.0% |
| !! | TTTCTTTTATACAGAGACTA+AGG | - | tig0042400:5000-5019 | Msa1462570:intron | 25.0% |
| !! | TTCTTTTATACAGAGACTAA+GGG | - | tig0042400:5001-5020 | Msa1462570:intron | 25.0% |
| ! | ACTAAGGGTAATTATTGTAT+GGG | - | tig0042400:5016-5035 | Msa1462570:intron | 25.0% |
| ! | GTCAAAATAATTCAGATTTG+TGG | + | tig0042400:5047-5066 | None:intergenic | 25.0% |
| ! | GATCCTACAAAAATAAGTTT+AGG | + | tig0042400:5306-5325 | None:intergenic | 25.0% |
| !! | AGAATAATTTTACCAAGACT+TGG | - | tig0042400:5526-5545 | Msa1462570:intron | 25.0% |
| ! | TATGTATGTGTTTATTCAGT+TGG | - | tig0042400:5661-5680 | Msa1462570:intron | 25.0% |
| ! | ATGTATGTGTTTATTCAGTT+GGG | - | tig0042400:5662-5681 | Msa1462570:intron | 25.0% |
| !!! | TTTAAGACATTTTTCGATTC+CGG | - | tig0042400:5846-5865 | Msa1462570:CDS | 25.0% |
| ! | AACAATATGGTAGTATTATG+TGG | - | tig0042400:6006-6025 | Msa1462570:CDS | 25.0% |
| !!! | ACTATGACAATGTTTTAGAT+TGG | - | tig0042400:6222-6241 | Msa1462570:CDS | 25.0% |
| !!! | CTATGACAATGTTTTAGATT+GGG | - | tig0042400:6223-6242 | Msa1462570:CDS | 25.0% |
| !! | AATTTTGCCCAATTATGATA+TGG | + | tig0042400:6409-6428 | None:intergenic | 25.0% |
| !!! | TTGTAACTTGTTTTGTAACA+CGG | - | tig0042400:6496-6515 | Msa1462570:intron | 25.0% |
| !!! | TCATGTGTCATTTAATGTAA+TGG | - | tig0042400:6534-6553 | Msa1462570:intron | 25.0% |
| !!! | TTGGACATGTATTTTTGAAA+CGG | + | tig0042400:6581-6600 | None:intergenic | 25.0% |
| ! | ATAGTGCACATTGTAAAAAT+TGG | - | tig0042400:6782-6801 | Msa1462570:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | tig0042400:6800-6819 | Msa1462570:intron | 25.0% |
| ! | GCTTAAAAAAACAATGTGTT+AGG | - | tig0042400:7020-7039 | Msa1462570:intron | 25.0% |
| ! | TAACAATTGAAAATGGAAAG+TGG | - | tig0042400:7166-7185 | Msa1462570:intron | 25.0% |
| ! | AAAAAATAACACACGTTTCT+TGG | + | tig0042400:7271-7290 | None:intergenic | 25.0% |
| ! | ATACTAGAAATAAAAAGGAC+AGG | + | tig0042400:7413-7432 | None:intergenic | 25.0% |
| ! | GGCTTATACTAGAAATAAAA+AGG | + | tig0042400:7418-7437 | None:intergenic | 25.0% |
| !!! | ACACATTCTCTAGTTTTAAT+TGG | + | tig0042400:8355-8374 | None:intergenic | 25.0% |
| ! | GAAACTCTTGTTTGGTTAAA+GGG | + | tig0042400:3714-3733 | None:intergenic | 30.0% |
| ! | TGAAACTCTTGTTTGGTTAA+AGG | + | tig0042400:3715-3734 | None:intergenic | 30.0% |
| TGAAGATATAATCTTTGTCG+GGG | + | tig0042400:3816-3835 | None:intergenic | 30.0% | |
| ATGAAAGCAGGATATTTAAG+TGG | + | tig0042400:4024-4043 | None:intergenic | 30.0% | |
| ! | ATTGATTCAGTGAAAAAGAG+AGG | - | tig0042400:4042-4061 | Msa1462570:CDS | 30.0% |
| !! | GTTTGTTCTAGTTTCACTAT+GGG | - | tig0042400:4084-4103 | Msa1462570:CDS | 30.0% |
| !! | TTTGTTCTAGTTTCACTATG+GGG | - | tig0042400:4085-4104 | Msa1462570:CDS | 30.0% |
| !! | ATGGTATTGGTTTCCTTATT+AGG | - | tig0042400:4418-4437 | Msa1462570:CDS | 30.0% |
| ! | TAAATAGTGTATTGATGGGA+TGG | - | tig0042400:4447-4466 | Msa1462570:CDS | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | tig0042400:4706-4725 | Msa1462570:intron | 30.0% | |
| !!! | AAGAGATATTTTTTTGGTGG+TGG | + | tig0042400:4751-4770 | None:intergenic | 30.0% |
| TTTGTGCAGTGCATATTTAA+AGG | + | tig0042400:4969-4988 | None:intergenic | 30.0% | |
| GACTAAGGGTAATTATTGTA+TGG | - | tig0042400:5015-5034 | Msa1462570:intron | 30.0% | |
| !!! | GGACCTAAACTTATTTTTGT+AGG | - | tig0042400:5300-5319 | Msa1462570:intron | 30.0% |
| !! | GCATAATAAGTTTGCTAGTT+AGG | - | tig0042400:5502-5521 | Msa1462570:intron | 30.0% |
| !! | AATTTTACCAAGACTTGGTT+TGG | - | tig0042400:5531-5550 | Msa1462570:intron | 30.0% |
| TCCTATATGAAACTTCCAAT+TGG | + | tig0042400:5688-5707 | None:intergenic | 30.0% | |
| !! | TCTCGAAGAGTATTATACAA+AGG | - | tig0042400:5771-5790 | Msa1462570:CDS | 30.0% |
| !! | CTCGAAGAGTATTATACAAA+GGG | - | tig0042400:5772-5791 | Msa1462570:CDS | 30.0% |
| AAAATTCTTCTGTTGGATCT+TGG | + | tig0042400:5824-5843 | None:intergenic | 30.0% | |
| AAGATTCTTACAAATTCCTC+AGG | + | tig0042400:6053-6072 | None:intergenic | 30.0% | |
| TCGTTTCGAAGATAAGAAAA+TGG | - | tig0042400:6374-6393 | Msa1462570:intron | 30.0% | |
| !!! | ACATGTATTTTTGAAACGGA+AGG | + | tig0042400:6577-6596 | None:intergenic | 30.0% |
| AGTTTATACTACATCACATG+TGG | - | tig0042400:6936-6955 | Msa1462570:intron | 30.0% | |
| GTTTATACTACATCACATGT+GGG | - | tig0042400:6937-6956 | Msa1462570:intron | 30.0% | |
| TCTCACGGTTACTTAAAAAA+TGG | + | tig0042400:7254-7273 | None:intergenic | 30.0% | |
| AAAATAACACACGTTTCTCA+CGG | + | tig0042400:7269-7288 | None:intergenic | 30.0% | |
| ATGCATGTGAATTATGAAGT+GGG | + | tig0042400:7388-7407 | None:intergenic | 30.0% | |
| AGAATTTACGTAACTATGCA+AGG | + | tig0042400:7452-7471 | None:intergenic | 30.0% | |
| TACTATACAGATTGCACTAT+CGG | - | tig0042400:7504-7523 | Msa1462570:intron | 30.0% | |
| TCAGATGCAAAAATCACAAT+TGG | - | tig0042400:7778-7797 | Msa1462570:CDS | 30.0% | |
| TATTTGTGGGTAATCATCTT+CGG | + | tig0042400:7911-7930 | None:intergenic | 30.0% | |
| GAATTAAAATGTACGTTTGC+AGG | - | tig0042400:8139-8158 | Msa1462570:CDS | 30.0% | |
| TTCCTCTCAAAGAAATTAGT+TGG | + | tig0042400:8282-8301 | None:intergenic | 30.0% | |
| !! | GCAATTGATTTGCATTTATC+AGG | - | tig0042400:8375-8394 | Msa1462570:CDS | 30.0% |
| TTTGCATTTATCAGGCTTAT+CGG | - | tig0042400:8383-8402 | Msa1462570:CDS | 30.0% | |
| TGACATATTCTCACATCTAA+CGG | - | tig0042400:8412-8431 | Msa1462570:exon | 30.0% | |
| GTGTATGTTTGTGTGTGAAA+TGG | + | tig0042400:3558-3577 | None:intergenic | 35.0% | |
| AGAGAAAAGAGCAAGTTTCA+TGG | + | tig0042400:3626-3645 | None:intergenic | 35.0% | |
| ! | GACAGTTTGAAACTCTTGTT+TGG | + | tig0042400:3722-3741 | None:intergenic | 35.0% |
| !! | ATTTGTTATGGACTAGGGTT+TGG | + | tig0042400:3744-3763 | None:intergenic | 35.0% |
| !! | GGGATATTTGTTATGGACTA+GGG | + | tig0042400:3749-3768 | None:intergenic | 35.0% |
| !! | TGGGATATTTGTTATGGACT+AGG | + | tig0042400:3750-3769 | None:intergenic | 35.0% |
| ! | TTGAGGTGGGATATTTGTTA+TGG | + | tig0042400:3756-3775 | None:intergenic | 35.0% |
| ! | ATTGATGATAGCAACGACAA+AGG | + | tig0042400:3881-3900 | None:intergenic | 35.0% |
| TTTGTCGTTGCTATCATCAA+TGG | - | tig0042400:3880-3899 | Msa1462570:intron | 35.0% | |
| TGTCTCTGACAATGTTCATA+AGG | - | tig0042400:3945-3964 | Msa1462570:intron | 35.0% | |
| GTCTCTGACAATGTTCATAA+GGG | - | tig0042400:3946-3965 | Msa1462570:intron | 35.0% | |
| GACAATGTTCATAAGGGATA+TGG | - | tig0042400:3952-3971 | Msa1462570:intron | 35.0% | |
| ATATTTAAGTGGAAGCCCTA+TGG | + | tig0042400:4013-4032 | None:intergenic | 35.0% | |
| TTCACTGAATCAATGAAAGC+AGG | + | tig0042400:4036-4055 | None:intergenic | 35.0% | |
| !! | GGTTTGTTCTAGTTTCACTA+TGG | - | tig0042400:4083-4102 | Msa1462570:CDS | 35.0% |
| TTGGAGAAGAAAAGAGTAGT+AGG | - | tig0042400:4112-4131 | Msa1462570:CDS | 35.0% | |
| ATATATGTGAGGCCTATTAG+TGG | - | tig0042400:4177-4196 | Msa1462570:CDS | 35.0% | |
| TCAAAACAAAACCCACCATT+TGG | - | tig0042400:4300-4319 | Msa1462570:CDS | 35.0% | |
| ! | TAAGCTTAACTCAGTTGGTA+TGG | - | tig0042400:4684-4703 | Msa1462570:intron | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | tig0042400:4711-4730 | Msa1462570:intron | 35.0% | |
| TTGTGATATGTACTACGCAT+TGG | - | tig0042400:5615-5634 | Msa1462570:intron | 35.0% | |
| GCCAATTGGAAGTTTCATAT+AGG | - | tig0042400:5684-5703 | Msa1462570:intron | 35.0% | |
| GTATCAATGAATTGAGCATG+TGG | + | tig0042400:5927-5946 | None:intergenic | 35.0% | |
| ACATATGTTCACTCTGATGA+TGG | - | tig0042400:5945-5964 | Msa1462570:intron | 35.0% | |
| TTGCATTCTTCAAGAGTCTT+GGG | + | tig0042400:5974-5993 | None:intergenic | 35.0% | |
| ATTGCATTCTTCAAGAGTCT+TGG | + | tig0042400:5975-5994 | None:intergenic | 35.0% | |
| !! | TCACTTCAGTTCTAGATTCT+TGG | + | tig0042400:6169-6188 | None:intergenic | 35.0% |
| GATTGTTAGAACAGTAGTCA+CGG | - | tig0042400:6193-6212 | Msa1462570:CDS | 35.0% | |
| ! | CCAATTATGATATGGTTTGC+GGG | + | tig0042400:6401-6420 | None:intergenic | 35.0% |
| CCCAATTATGATATGGTTTG+CGG | + | tig0042400:6402-6421 | None:intergenic | 35.0% | |
| CCGCAAACCATATCATAATT+GGG | - | tig0042400:6399-6418 | Msa1462570:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+AGG | - | tig0042400:6804-6823 | Msa1462570:intron | 35.0% |
| !!! | TTTTGAAACGGAAGGAGTAA+TGG | - | tig0042400:6812-6831 | Msa1462570:intron | 35.0% |
| TTAAATGAGTTATGCCTCGT+TGG | - | tig0042400:6888-6907 | Msa1462570:intron | 35.0% | |
| TAAATGAGTTATGCCTCGTT+GGG | - | tig0042400:6889-6908 | Msa1462570:intron | 35.0% | |
| AATAACACACGTTTCTTGGT+TGG | + | tig0042400:7311-7330 | None:intergenic | 35.0% | |
| TGTATTGTCTCTTGGATTCT+TGG | + | tig0042400:7359-7378 | None:intergenic | 35.0% | |
| TGCATGTGAATTATGAAGTG+GGG | + | tig0042400:7387-7406 | None:intergenic | 35.0% | |
| CATGCATGTGAATTATGAAG+TGG | + | tig0042400:7389-7408 | None:intergenic | 35.0% | |
| ACTATACAGATTGCACTATC+GGG | - | tig0042400:7505-7524 | Msa1462570:intron | 35.0% | |
| ATCGGGTATACTGGAAATTA+AGG | - | tig0042400:7522-7541 | Msa1462570:intron | 35.0% | |
| TCGGGTATACTGGAAATTAA+GGG | - | tig0042400:7523-7542 | Msa1462570:intron | 35.0% | |
| TAAGCACACGAATGAGATTA+AGG | - | tig0042400:7555-7574 | Msa1462570:intron | 35.0% | |
| AAGCACACGAATGAGATTAA+GGG | - | tig0042400:7556-7575 | Msa1462570:intron | 35.0% | |
| AGTGCATGTAGAAATGATCA+TGG | + | tig0042400:7627-7646 | None:intergenic | 35.0% | |
| ! | GTTTTCTCAAACGAGTTTTC+TGG | + | tig0042400:7673-7692 | None:intergenic | 35.0% |
| AAAACCGTAAGAATCACTGA+TGG | - | tig0042400:7700-7719 | Msa1462570:CDS | 35.0% | |
| ACTTCCATCAGTGATTCTTA+CGG | + | tig0042400:7707-7726 | None:intergenic | 35.0% | |
| GTTCAAAGAGAAAGAGTTAC+TGG | - | tig0042400:7725-7744 | Msa1462570:CDS | 35.0% | |
| TTTAGCAATTTGAGTCTCAG+TGG | + | tig0042400:7752-7771 | None:intergenic | 35.0% | |
| CCAAACAAAAAAACTGCGAT+CGG | - | tig0042400:7832-7851 | Msa1462570:CDS | 35.0% | |
| TAATCATCTTCGGTTAGAAG+TGG | + | tig0042400:7901-7920 | None:intergenic | 35.0% | |
| TAAATGCACCACGTATTTGT+GGG | + | tig0042400:7924-7943 | None:intergenic | 35.0% | |
| AATAGAACTGAAAAATGGGC+TGG | - | tig0042400:7973-7992 | Msa1462570:CDS | 35.0% | |
| CTTTATGTTGATCATAGTCG+TGG | - | tig0042400:8000-8019 | Msa1462570:CDS | 35.0% | |
| GAATAGAGACATTGTGAACA+AGG | - | tig0042400:8161-8180 | Msa1462570:CDS | 35.0% | |
| !!! | GGAGAAAGTGTTTTAAGAAC+AGG | + | tig0042400:8306-8325 | None:intergenic | 35.0% |
| !!! | TAGTTTTAATTGGAGCAACC+AGG | + | tig0042400:8345-8364 | None:intergenic | 35.0% |
| AACAGACGGACATTTATTCA+TGG | + | tig0042400:8447-8466 | None:intergenic | 35.0% | |
| ! | TATAGCTAGCTTCACTAGCT+TGG | + | tig0042400:3580-3599 | None:intergenic | 40.0% |
| AAGCTAGCTATAGCTCACAA+TGG | - | tig0042400:3588-3607 | Msa1462570:intron | 40.0% | |
| GAAAAGAGCAAGTTTCATGG+TGG | + | tig0042400:3623-3642 | None:intergenic | 40.0% | |
| TGTTTGGTTAAAGGGTCAAG+TGG | + | tig0042400:3706-3725 | None:intergenic | 40.0% | |
| AATATCCCACCTCAAAGAAC+AGG | - | tig0042400:3761-3780 | Msa1462570:CDS | 40.0% | |
| ATATCCCACCTCAAAGAACA+GGG | - | tig0042400:3762-3781 | Msa1462570:CDS | 40.0% | |
| AGGGTAGCTTTCCACTATAT+TGG | - | tig0042400:3781-3800 | Msa1462570:CDS | 40.0% | |
| !! | GATTTACGACGGATTACTAC+AGG | + | tig0042400:3859-3878 | None:intergenic | 40.0% |
| CAACGACAAAGGATTTACGA+CGG | + | tig0042400:3870-3889 | None:intergenic | 40.0% | |
| TTTCCCTATCTTATCCGTTG+AGG | - | tig0042400:3975-3994 | Msa1462570:intron | 40.0% | |
| GTTCCTCAACGGATAAGATA+GGG | + | tig0042400:3981-4000 | None:intergenic | 40.0% | |
| TGTTCCTCAACGGATAAGAT+AGG | + | tig0042400:3982-4001 | None:intergenic | 40.0% | |
| ATCTTATCCGTTGAGGAACA+AGG | - | tig0042400:3982-4001 | Msa1462570:intron | 40.0% | |
| TATTCAGTGTTCTCAGCTGT+AGG | + | tig0042400:4273-4292 | None:intergenic | 40.0% | |
| AGCTGAGAACACTGAATATC+AGG | - | tig0042400:4275-4294 | Msa1462570:CDS | 40.0% | |
| !!! | CTATGCTGTTTTGGTCCAAA+TGG | + | tig0042400:4318-4337 | None:intergenic | 40.0% |
| !! | CTAGTAAGGCTATGCTGTTT+TGG | + | tig0042400:4327-4346 | None:intergenic | 40.0% |
| !! | CTTGAGGTTGATGACTAGTA+AGG | + | tig0042400:4341-4360 | None:intergenic | 40.0% |
| CTTACTAGTCATCAACCTCA+AGG | - | tig0042400:4339-4358 | Msa1462570:CDS | 40.0% | |
| TAACACTATGGCCATTGATC+TGG | + | tig0042400:4374-4393 | None:intergenic | 40.0% | |
| AGATCAATGGCCATAGTGTT+AGG | - | tig0042400:4373-4392 | Msa1462570:CDS | 40.0% | |
| ACATTACGCACCTAACACTA+TGG | + | tig0042400:4386-4405 | None:intergenic | 40.0% | |
| ! | ATGGTACTGCTGACTAGATT+TGG | - | tig0042400:4474-4493 | Msa1462570:CDS | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | tig0042400:4712-4731 | Msa1462570:intron | 40.0% | |
| !!! | ATATTTTTTTGGTGGTGGCC+GGG | + | tig0042400:4746-4765 | None:intergenic | 40.0% |
| !!! | GATATTTTTTTGGTGGTGGC+CGG | + | tig0042400:4747-4766 | None:intergenic | 40.0% |
| TATGCACTGCACAAAGACTA+AGG | - | tig0042400:4974-4993 | Msa1462570:intron | 40.0% | |
| ! | GTGATGGAGGAATTATTGAG+TGG | + | tig0042400:5176-5195 | None:intergenic | 40.0% |
| AGTTAGTCCAAACCAAGTCT+TGG | + | tig0042400:5541-5560 | None:intergenic | 40.0% | |
| GTTTATTCAGTTGGGCCAAT+TGG | - | tig0042400:5670-5689 | Msa1462570:intron | 40.0% | |
| ATAGGATTTGATGTACGAGC+TGG | - | tig0042400:5702-5721 | Msa1462570:intron | 40.0% | |
| TCTTCTGTTGGATCTTGGTA+TGG | + | tig0042400:5819-5838 | None:intergenic | 40.0% | |
| !! | TTTTTCGATTCCGGTGAGTT+TGG | - | tig0042400:5855-5874 | Msa1462570:intron | 40.0% |
| TAGACCAAATCCAAACTCAC+CGG | + | tig0042400:5868-5887 | None:intergenic | 40.0% | |
| ! | GTTTGGATTTGGTCTATCGA+CGG | - | tig0042400:5872-5891 | Msa1462570:intron | 40.0% |
| TCAATGAATTGAGCATGTGG+TGG | + | tig0042400:5924-5943 | None:intergenic | 40.0% | |
| TGCATTCTTCAAGAGTCTTG+GGG | + | tig0042400:5973-5992 | None:intergenic | 40.0% | |
| TATGTGGCGTCATACTGAAA+TGG | - | tig0042400:6022-6041 | Msa1462570:CDS | 40.0% | |
| ATGTGGCGTCATACTGAAAT+GGG | - | tig0042400:6023-6042 | Msa1462570:CDS | 40.0% | |
| GATTGGGAGTTCAAAACAAG+TGG | - | tig0042400:6239-6258 | Msa1462570:CDS | 40.0% | |
| CCCGCAAACCATATCATAAT+TGG | - | tig0042400:6398-6417 | Msa1462570:intron | 40.0% | |
| CATATGTGAAGTGGTTGACT+TGG | + | tig0042400:6600-6619 | None:intergenic | 40.0% | |
| GTGCATTGTCATATGTGAAG+TGG | + | tig0042400:6609-6628 | None:intergenic | 40.0% | |
| ! | GGTTGGTCGTATGCTAAAAA+TGG | + | tig0042400:7294-7313 | None:intergenic | 40.0% |
| ! | GGTTGGTCGTATGCTAAAAA+TGG | + | tig0042400:7294-7313 | None:intergenic | 40.0% |
| TTGTCTCTTGGATTCTTGGT+TGG | + | tig0042400:7355-7374 | None:intergenic | 40.0% | |
| GAGATTAAGGGAGAACTGTA+TGG | - | tig0042400:7568-7587 | Msa1462570:intron | 40.0% | |
| GGGAGAACTGTATGGTAAAT+TGG | - | tig0042400:7576-7595 | Msa1462570:intron | 40.0% | |
| ! | TAATCACGACTAGTTCAGCT+GGG | + | tig0042400:7810-7829 | None:intergenic | 40.0% |
| ! | TTAATCACGACTAGTTCAGC+TGG | + | tig0042400:7811-7830 | None:intergenic | 40.0% |
| !!! | CCGATCGCAGTTTTTTTGTT+TGG | + | tig0042400:7835-7854 | None:intergenic | 40.0% |
| GAATCAAACGGTATCCGATA+TGG | + | tig0042400:7861-7880 | None:intergenic | 40.0% | |
| TATCGGATACCGTTTGATTC+CGG | - | tig0042400:7861-7880 | Msa1462570:CDS | 40.0% | |
| GATGATTACCCACAAATACG+TGG | - | tig0042400:7913-7932 | Msa1462570:CDS | 40.0% | |
| GTAAATGCACCACGTATTTG+TGG | + | tig0042400:7925-7944 | None:intergenic | 40.0% | |
| GAGATGACACATTAGCTGTT+TGG | - | tig0042400:8022-8041 | Msa1462570:CDS | 40.0% | |
| TGAACAAGGACATTGTGATG+TGG | - | tig0042400:8175-8194 | Msa1462570:CDS | 40.0% | |
| ATTGTGATGTGGCATGTAGT+TGG | - | tig0042400:8186-8205 | Msa1462570:CDS | 40.0% | |
| ATTGGGAAATCTTCTTGTGC+TGG | + | tig0042400:8225-8244 | None:intergenic | 40.0% | |
| !! | TGCTCAATAGGGGCATTATT+GGG | + | tig0042400:8242-8261 | None:intergenic | 40.0% |
| TCAAATCCAGTGCTCAATAG+GGG | + | tig0042400:8252-8271 | None:intergenic | 40.0% | |
| CTCAAATCCAGTGCTCAATA+GGG | + | tig0042400:8253-8272 | None:intergenic | 40.0% | |
| ACTCAAATCCAGTGCTCAAT+AGG | + | tig0042400:8254-8273 | None:intergenic | 40.0% | |
| GGCCAACTAATTTCTTTGAG+AGG | - | tig0042400:8277-8296 | Msa1462570:CDS | 40.0% | |
| TTTCTCCAAGAGATGTTGCA+TGG | - | tig0042400:8319-8338 | Msa1462570:CDS | 40.0% | |
| CATTTATCAGGCTTATCGGA+CGG | - | tig0042400:8387-8406 | Msa1462570:CDS | 40.0% | |
| AAGAGCAAGTTTCATGGTGG+TGG | + | tig0042400:3620-3639 | None:intergenic | 45.0% | |
| AATCCTCTACTTCCAAGCAG+TGG | - | tig0042400:3654-3673 | Msa1462570:three_prime_UTR | 45.0% | |
| TCAAGTGGATGTTGACGCAA+TGG | + | tig0042400:3691-3710 | None:intergenic | 45.0% | |
| GAAAGCTACCCTGTTCTTTG+AGG | + | tig0042400:3773-3792 | None:intergenic | 45.0% | |
| GGTCATCTAGGCCAATATAG+TGG | + | tig0042400:3795-3814 | None:intergenic | 45.0% | |
| AATCTTTGTCGGGGTCATCT+AGG | + | tig0042400:3807-3826 | None:intergenic | 45.0% | |
| AGGAACAAGGTCTTGCCATA+GGG | - | tig0042400:3995-4014 | Msa1462570:CDS | 45.0% | |
| GAGAGGTTTGAATCTCTCTG+AGG | - | tig0042400:4059-4078 | Msa1462570:CDS | 45.0% | |
| ! | AGGTTTGAATCTCTCTGAGG+TGG | - | tig0042400:4062-4081 | Msa1462570:CDS | 45.0% |
| !! | GTTCTAGTTTCACTATGGGG+TGG | - | tig0042400:4088-4107 | Msa1462570:CDS | 45.0% |
| AGTTTCACTATGGGGTGGTT+TGG | - | tig0042400:4093-4112 | Msa1462570:CDS | 45.0% | |
| !!! | GCTGTTTTGGTCCAAATGGT+GGG | + | tig0042400:4314-4333 | None:intergenic | 45.0% |
| !!! | TGCTGTTTTGGTCCAAATGG+TGG | + | tig0042400:4315-4334 | None:intergenic | 45.0% |
| ! | GTATTGATGGGATGGATGCA+TGG | - | tig0042400:4455-4474 | Msa1462570:CDS | 45.0% |
| CCAACTGAGTTAAGCTTACG+AGG | + | tig0042400:4682-4701 | None:intergenic | 45.0% | |
| CCTCGTAAGCTTAACTCAGT+TGG | - | tig0042400:4679-4698 | Msa1462570:intron | 45.0% | |
| GATTCCGGTGAGTTTGGATT+TGG | - | tig0042400:5861-5880 | Msa1462570:intron | 45.0% | |
| TACTGAAATGGGCATTCCTG+AGG | - | tig0042400:6034-6053 | Msa1462570:CDS | 45.0% | |
| TGTTAGAACAGTAGTCACGG+TGG | - | tig0042400:6196-6215 | Msa1462570:CDS | 45.0% | |
| GTTAGAACAGTAGTCACGGT+GGG | - | tig0042400:6197-6216 | Msa1462570:CDS | 45.0% | |
| AATACATACGGAGGGCTTGA+TGG | + | tig0042400:6267-6286 | None:intergenic | 45.0% | |
| CATCGTGCAATGATTTCGTG+CGG | + | tig0042400:6458-6477 | None:intergenic | 45.0% | |
| CACGAAATCATTGCACGATG+TGG | - | tig0042400:6458-6477 | Msa1462570:intron | 45.0% | |
| !!! | ACTTGTTTTGTAACACGGCG+TGG | - | tig0042400:6501-6520 | Msa1462570:intron | 45.0% |
| !! | AATGGATTGATGTCCCAACG+AGG | + | tig0042400:6905-6924 | None:intergenic | 45.0% |
| GGGTATGCTGTATTGTCTCT+TGG | + | tig0042400:7367-7386 | None:intergenic | 45.0% | |
| CTATGCAAGGACATGCAAGT+GGG | + | tig0042400:7439-7458 | None:intergenic | 45.0% | |
| ACTATGCAAGGACATGCAAG+TGG | + | tig0042400:7440-7459 | None:intergenic | 45.0% | |
| GATTGCACTATCGGGTATAC+TGG | - | tig0042400:7513-7532 | Msa1462570:intron | 45.0% | |
| !! | TTGGTGTCAGCAAACAGCAT+TGG | - | tig0042400:7595-7614 | Msa1462570:intron | 45.0% |
| ! | AATCACGACTAGTTCAGCTG+GGG | + | tig0042400:7809-7828 | None:intergenic | 45.0% |
| ACTGCGATCGGAAACCATAT+CGG | - | tig0042400:7844-7863 | Msa1462570:CDS | 45.0% | |
| CTGGAATTGCCGGAATCAAA+CGG | + | tig0042400:7873-7892 | None:intergenic | 45.0% | |
| !! | AGAACTGAAAAATGGGCTGG+TGG | - | tig0042400:7976-7995 | Msa1462570:CDS | 45.0% |
| CTTCTTGTGCTGGAACATGA+TGG | + | tig0042400:8215-8234 | None:intergenic | 45.0% | |
| !! | GTGCTCAATAGGGGCATTAT+TGG | + | tig0042400:8243-8262 | None:intergenic | 45.0% |
| ATAATGCCCCTATTGAGCAC+TGG | - | tig0042400:8243-8262 | Msa1462570:CDS | 45.0% | |
| !! | TGAGCACTGGATTTGAGTTG+AGG | - | tig0042400:8256-8275 | Msa1462570:CDS | 45.0% |
| !!! | AACTTTTAAAAATATAAAAT+AGG | + | tig0042400:5344-5363 | None:intergenic | 5.0% |
| !! | TAAATTTAATTAAATACATA+CGG | + | tig0042400:6279-6298 | None:intergenic | 5.0% |
| TGTGAAATGGAAGCTCCCCA+AGG | + | tig0042400:3545-3564 | None:intergenic | 50.0% | |
| !! | AGCAAGTTTCATGGTGGTGG+TGG | + | tig0042400:3617-3636 | None:intergenic | 50.0% |
| AGACCACTGCTTGGAAGTAG+AGG | + | tig0042400:3660-3679 | None:intergenic | 50.0% | |
| GCTTTACAGAGACCACTGCT+TGG | + | tig0042400:3669-3688 | None:intergenic | 50.0% | |
| !! | GCTACCCTGTTCTTTGAGGT+GGG | + | tig0042400:3769-3788 | None:intergenic | 50.0% |
| ! | AGCTACCCTGTTCTTTGAGG+TGG | + | tig0042400:3770-3789 | None:intergenic | 50.0% |
| GGCAAGACCTTGTTCCTCAA+CGG | + | tig0042400:3992-4011 | None:intergenic | 50.0% | |
| GAGGAACAAGGTCTTGCCAT+AGG | - | tig0042400:3994-4013 | Msa1462570:CDS | 50.0% | |
| AGTCATCAACCTCAAGGTCC+TGG | - | tig0042400:4345-4364 | Msa1462570:CDS | 50.0% | |
| !! | TGTGGTGGACAATCACGGTT+GGG | + | tig0042400:5909-5928 | None:intergenic | 50.0% |
| !! | ATGTGGTGGACAATCACGGT+TGG | + | tig0042400:5910-5929 | None:intergenic | 50.0% |
| !! | GAGCATGTGGTGGACAATCA+CGG | + | tig0042400:5914-5933 | None:intergenic | 50.0% |
| AGTGGATGAGCTGGAATTGC+CGG | + | tig0042400:7883-7902 | None:intergenic | 50.0% | |
| TCGGTTAGAAGTGGATGAGC+TGG | + | tig0042400:7892-7911 | None:intergenic | 50.0% | |
| ATCTGGAAGCCAGGACCTTG+AGG | + | tig0042400:4357-4376 | None:intergenic | 55.0% | |
| GGTCCTGGCTTCCAGATCAA+TGG | - | tig0042400:4360-4379 | Msa1462570:CDS | 55.0% | |
| TGGCCATTGATCTGGAAGCC+AGG | + | tig0042400:4366-4385 | None:intergenic | 55.0% | |
| AAGGTCCGGGATTCGAAACC+CGG | - | tig0042400:4725-4744 | Msa1462570:intron | 55.0% | |
| CCAGGCCATGCAACATCTCT+TGG | + | tig0042400:8327-8346 | None:intergenic | 55.0% | |
| CCAAGAGATGTTGCATGGCC+TGG | - | tig0042400:8324-8343 | Msa1462570:CDS | 55.0% | |
| ! | ACGACTAGTTCAGCTGGGGC+AGG | + | tig0042400:7805-7824 | None:intergenic | 60.0% |
| GGTGGCCGGGTTTCGAATCC+CGG | + | tig0042400:4733-4752 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042400 | gene | 3538 | 8498 | 3538 | ID=Msa1462570;Name=Msa1462570 |
| tig0042400 | mRNA | 3538 | 8498 | 3538 | ID=Msa1462570-mRNA-1;Parent=Msa1462570;Name=Msa1462570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=69|1|1|1|0.8|0.66|6|96|673 |
| tig0042400 | exon | 3538 | 3603 | 3538 | ID=Msa1462570-mRNA-1:exon:23723;Parent=Msa1462570-mRNA-1 |
| tig0042400 | exon | 3647 | 3875 | 3647 | ID=Msa1462570-mRNA-1:exon:23722;Parent=Msa1462570-mRNA-1 |
| tig0042400 | exon | 3984 | 4522 | 3984 | ID=Msa1462570-mRNA-1:exon:23721;Parent=Msa1462570-mRNA-1 |
| tig0042400 | exon | 5759 | 5872 | 5759 | ID=Msa1462570-mRNA-1:exon:23720;Parent=Msa1462570-mRNA-1 |
| tig0042400 | exon | 5975 | 6356 | 5975 | ID=Msa1462570-mRNA-1:exon:23719;Parent=Msa1462570-mRNA-1 |
| tig0042400 | exon | 7642 | 8498 | 7642 | ID=Msa1462570-mRNA-1:exon:23718;Parent=Msa1462570-mRNA-1 |
| tig0042400 | five_prime_UTR | 8430 | 8498 | 8430 | ID=Msa1462570-mRNA-1:five_prime_utr;Parent=Msa1462570-mRNA-1 |
| tig0042400 | CDS | 7642 | 8429 | 7642 | ID=Msa1462570-mRNA-1:cds;Parent=Msa1462570-mRNA-1 |
| tig0042400 | CDS | 5975 | 6356 | 5975 | ID=Msa1462570-mRNA-1:cds;Parent=Msa1462570-mRNA-1 |
| tig0042400 | CDS | 5759 | 5872 | 5759 | ID=Msa1462570-mRNA-1:cds;Parent=Msa1462570-mRNA-1 |
| tig0042400 | CDS | 3984 | 4522 | 3984 | ID=Msa1462570-mRNA-1:cds;Parent=Msa1462570-mRNA-1 |
| tig0042400 | CDS | 3677 | 3875 | 3677 | ID=Msa1462570-mRNA-1:cds;Parent=Msa1462570-mRNA-1 |
| tig0042400 | three_prime_UTR | 3647 | 3676 | 3647 | ID=Msa1462570-mRNA-1:three_prime_utr;Parent=Msa1462570-mRNA-1 |
| tig0042400 | three_prime_UTR | 3538 | 3603 | 3538 | ID=Msa1462570-mRNA-1:three_prime_utr;Parent=Msa1462570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
