Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375890 | XP_003602194.1 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375890 | sp|Q700C7|SPCH_ARATH | 57.068 | 382 | 93 | 13 | 1 | 329 | 1 | 364 | 1.35e-111 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375890 | G7J6A1 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0375890 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197100 | Msa0375890 | 0.807944 | 3.946426e-50 | -8.615850e-47 |
| Msa0375890 | Msa0375910 | 0.954074 | 6.693140e-112 | -8.615850e-47 |
| Msa0375890 | Msa0406000 | 0.813204 | 2.881167e-51 | -8.615850e-47 |
| Msa0375890 | Msa0415320 | 0.814813 | 1.272566e-51 | -8.615850e-47 |
| Msa0375890 | Msa0451400 | 0.832161 | 1.106894e-55 | -8.615850e-47 |
| Msa0375890 | Msa0492190 | 0.809755 | 1.617670e-50 | -8.615850e-47 |
| Msa0375890 | Msa0523000 | 0.809163 | 2.167764e-50 | -8.615850e-47 |
| Msa0375890 | Msa0534930 | 0.829358 | 5.382537e-55 | -8.615850e-47 |
| Msa0375890 | Msa0591790 | 0.804832 | 1.787888e-49 | -8.615850e-47 |
| Msa0375890 | Msa0669840 | 0.817022 | 4.090363e-52 | -8.615850e-47 |
| Msa0375890 | Msa0751890 | 0.806982 | 6.314900e-50 | -8.615850e-47 |
| Msa0375890 | Msa0782360 | 0.806447 | 8.189870e-50 | -8.615850e-47 |
| Msa0375890 | Msa0819890 | 0.829984 | 3.790315e-55 | -8.615850e-47 |
| Msa0375890 | Msa1169990 | 0.804962 | 1.679287e-49 | -8.615850e-47 |
| Msa0375890 | Msa1201110 | 0.808025 | 3.792951e-50 | -8.615850e-47 |
| Msa0375890 | Msa1201160 | 0.804286 | 2.323026e-49 | -8.615850e-47 |
| Msa0375890 | Msa1275820 | 0.813357 | 2.666263e-51 | -8.615850e-47 |
| Msa0375890 | Msa1378870 | 0.807141 | 5.842459e-50 | -8.615850e-47 |
| Msa0375890 | Msa1431850 | 0.801320 | 9.518733e-49 | -8.615850e-47 |
| Msa0375890 | Msa1462570 | 0.807458 | 5.005433e-50 | -8.615850e-47 |
| Msa0239030 | Msa0375890 | 0.813140 | 2.975768e-51 | -8.615850e-47 |
| Msa0343660 | Msa0375890 | 0.804750 | 1.859268e-49 | -8.615850e-47 |
| Msa0359250 | Msa0375890 | 0.812516 | 4.076387e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375890 | MtrunA17_Chr3g0126381 | 98.500 | 200 | 3 | 0 | 130 | 329 | 1 | 200 | 4.09e-140 | 394 |
| Msa0375890 | MtrunA17_Chr1g0158941 | 61.468 | 327 | 74 | 13 | 5 | 328 | 15 | 292 | 2.62e-108 | 317 |
| Msa0375890 | MtrunA17_Chr3g0126361 | 96.212 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 7.97e-89 | 262 |
| Msa0375890 | MtrunA17_Chr2g0287761 | 48.684 | 228 | 74 | 3 | 101 | 328 | 1 | 185 | 1.07e-62 | 197 |
| Msa0375890 | MtrunA17_Chr0c01g0489461 | 38.434 | 281 | 128 | 7 | 46 | 326 | 152 | 387 | 9.88e-50 | 170 |
| Msa0375890 | MtrunA17_Chr3g0132471 | 35.341 | 249 | 121 | 7 | 77 | 324 | 96 | 305 | 1.38e-37 | 136 |
| Msa0375890 | MtrunA17_Chr1g0191571 | 36.441 | 236 | 100 | 5 | 99 | 327 | 134 | 326 | 2.33e-36 | 134 |
| Msa0375890 | MtrunA17_Chr7g0273081 | 31.544 | 298 | 158 | 7 | 30 | 326 | 49 | 301 | 5.12e-36 | 132 |
| Msa0375890 | MtrunA17_Chr8g0366551 | 37.563 | 197 | 82 | 3 | 99 | 295 | 122 | 277 | 6.27e-36 | 132 |
| Msa0375890 | MtrunA17_Chr5g0426851 | 30.034 | 293 | 157 | 8 | 19 | 309 | 23 | 269 | 1.36e-31 | 120 |
| Msa0375890 | MtrunA17_Chr8g0345871 | 75.000 | 48 | 12 | 0 | 99 | 146 | 179 | 226 | 1.76e-19 | 88.2 |
| Msa0375890 | MtrunA17_Chr8g0345871 | 41.758 | 91 | 51 | 2 | 239 | 328 | 269 | 358 | 2.20e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375890 | AT5G53210.1 | 57.068 | 382 | 93 | 13 | 1 | 329 | 1 | 364 | 1.38e-112 | 331 |
| Msa0375890 | AT5G53210.2 | 54.420 | 362 | 94 | 13 | 1 | 309 | 1 | 344 | 3.44e-95 | 286 |
| Msa0375890 | AT3G06120.1 | 44.737 | 228 | 90 | 3 | 101 | 328 | 1 | 192 | 5.44e-58 | 186 |
| Msa0375890 | AT3G24140.1 | 39.544 | 263 | 114 | 6 | 70 | 328 | 172 | 393 | 6.52e-48 | 166 |
| Msa0375890 | AT3G24140.2 | 56.122 | 98 | 37 | 2 | 70 | 167 | 172 | 263 | 2.72e-28 | 113 |
| Msa0375890 | AT3G24140.2 | 48.913 | 92 | 46 | 1 | 237 | 328 | 303 | 393 | 7.68e-18 | 84.0 |
| Msa0375890 | AT4G01460.1 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.59e-24 | 100 |
| Msa0375890 | AT4G01460.2 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.59e-24 | 100 |
| Msa0375890 | AT5G46690.1 | 33.051 | 236 | 104 | 6 | 99 | 317 | 86 | 284 | 3.04e-23 | 98.6 |
| Msa0375890 | AT1G22490.1 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 3.11e-23 | 98.2 |
| Msa0375890 | AT1G72210.1 | 31.441 | 229 | 113 | 6 | 99 | 326 | 123 | 308 | 3.56e-23 | 98.2 |
| Msa0375890 | AT5G46690.2 | 34.463 | 177 | 74 | 4 | 99 | 269 | 86 | 226 | 6.31e-23 | 97.1 |
| Msa0375890 | AT1G22490.2 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 6.47e-23 | 97.4 |
| Msa0375890 | AT1G72210.2 | 66.102 | 59 | 20 | 0 | 99 | 157 | 123 | 181 | 2.96e-22 | 95.5 |
| Msa0375890 | AT3G61950.6 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.46e-21 | 93.2 |
| Msa0375890 | AT3G61950.2 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.89e-21 | 93.2 |
| Msa0375890 | AT3G61950.3 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.05e-21 | 92.8 |
| Msa0375890 | AT3G61950.1 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.49e-21 | 92.8 |
| Msa0375890 | AT2G46810.2 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 7.28e-21 | 91.3 |
| Msa0375890 | AT2G46810.4 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 1.26e-20 | 91.3 |
| Msa0375890 | AT2G46810.3 | 60.317 | 63 | 25 | 0 | 99 | 161 | 179 | 241 | 2.02e-20 | 90.9 |
| Msa0375890 | AT2G46810.1 | 60.317 | 63 | 25 | 0 | 99 | 161 | 191 | 253 | 2.37e-20 | 90.9 |
| Msa0375890 | AT5G65320.2 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 1.73e-16 | 78.6 |
| Msa0375890 | AT5G65320.1 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 2.41e-16 | 78.6 |
Find 57 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGACAGAACAGAATT+TGG | 0.163384 | 3_1:+75809122 | Msa0375890:CDS |
| TGATGATCTCTTTGCCATTT+TGG | 0.180476 | 3_1:+75809151 | Msa0375890:CDS |
| ATGTAGCTTTGTTGCATTCT+TGG | 0.204975 | 3_1:-75811322 | None:intergenic |
| CTAGTTGGTTGTGGAGTTCT+TGG | 0.246531 | 3_1:-75811289 | None:intergenic |
| CCATTGGAAAAGATTGAAAA+TGG | 0.259280 | 3_1:-75809079 | None:intergenic |
| TGTGGAGTTCTTGGACTAAT+TGG | 0.288248 | 3_1:-75811280 | None:intergenic |
| TTCTTTGTTTCTTAGCTTCA+AGG | 0.307021 | 3_1:-75811159 | None:intergenic |
| GAAGTGACCTCATTCTCTTT+TGG | 0.319139 | 3_1:-75809230 | None:intergenic |
| GGAGATCAAGCATCAATAAT+TGG | 0.321601 | 3_1:+75811091 | Msa0375890:CDS |
| GTTTCTTAGCTTCAAGGGCT+TGG | 0.330395 | 3_1:-75811153 | None:intergenic |
| ACATTTCTGCATTCTGTCTC+TGG | 0.331551 | 3_1:+75808981 | Msa0375890:five_prime_UTR |
| TGTTGCATTCTTGGCTTGTA+AGG | 0.333897 | 3_1:-75811313 | None:intergenic |
| CTTGGACTTGGAACTAATCT+TGG | 0.340912 | 3_1:-75811205 | None:intergenic |
| AACTTGAAACTGAACCTAAA+AGG | 0.343348 | 3_1:+75809309 | Msa0375890:CDS |
| AAAAGATTGAAAATGGAAAA+AGG | 0.346247 | 3_1:-75809072 | None:intergenic |
| AAGTTTAGTCTTGGACTTAG+AGG | 0.354427 | 3_1:-75811256 | None:intergenic |
| ATCTTCTAGACTCTCCAAAA+TGG | 0.357616 | 3_1:-75809165 | None:intergenic |
| GGACTTAGTGGTGAAGGTCT+TGG | 0.391894 | 3_1:-75811223 | None:intergenic |
| ACTGTTTCTCAACGAATTCC+AGG | 0.392508 | 3_1:+75811487 | Msa0375890:CDS |
| CTTGGCTTGTAAGGACTAGT+TGG | 0.398269 | 3_1:-75811304 | None:intergenic |
| CTAATTGGCAAGTTTAGTCT+TGG | 0.398977 | 3_1:-75811265 | None:intergenic |
| TCATATAAGCTTTCTTCCAT+TGG | 0.406925 | 3_1:-75809095 | None:intergenic |
| TTGACCTCCACGTCAGCAAT+AGG | 0.436432 | 3_1:-75811436 | None:intergenic |
| ATCTGTTCCTCAAGCAAAGA+TGG | 0.472890 | 3_1:-75809350 | None:intergenic |
| TCTTTGTTTCTTAGCTTCAA+GGG | 0.473972 | 3_1:-75811158 | None:intergenic |
| TTTCTTGGACTTAGTGGTGA+AGG | 0.477916 | 3_1:-75811229 | None:intergenic |
| ATAACAAAGATAGAGATGTT+TGG | 0.480620 | 3_1:-75812153 | None:intergenic |
| CTGCTGCTTCTGTCATCTAA+CGG | 0.487150 | 3_1:+75809005 | Msa0375890:five_prime_UTR |
| GAGGAAGTAGAGGAACTAGT+AGG | 0.492572 | 3_1:-75811370 | None:intergenic |
| CAGTGCTGATGGACAACAAA+GGG | 0.493882 | 3_1:+75809376 | Msa0375890:CDS |
| AAAGATAGAGATGTTTGGTA+AGG | 0.501081 | 3_1:-75812148 | None:intergenic |
| GTAGAGGAACTAGTAGGAGA+TGG | 0.502378 | 3_1:-75811364 | None:intergenic |
| GATGTTTGGTAAGGAGAGTG+TGG | 0.503979 | 3_1:-75812139 | None:intergenic |
| ATAATCTTCAAAGCTTGTCC+TGG | 0.509002 | 3_1:-75811505 | None:intergenic |
| GGTCACTTCGACATCGAGAT+TGG | 0.509922 | 3_1:+75809244 | Msa0375890:CDS |
| AGTGGTGAAGGTCTTGGACT+TGG | 0.521437 | 3_1:-75811217 | None:intergenic |
| CAAGTTCTTCAGCACTCAGT+TGG | 0.524170 | 3_1:-75812061 | None:intergenic |
| TTGTAAGGACTAGTTGGTTG+TGG | 0.524571 | 3_1:-75811298 | None:intergenic |
| TACTACTCCAAAAGAGAATG+AGG | 0.530957 | 3_1:+75809223 | Msa0375890:CDS |
| GTTGAACTCCTTCACTATCA+AGG | 0.535634 | 3_1:+75811597 | Msa0375890:CDS |
| CTAGTAGGAGATGGATCAAG+AGG | 0.552519 | 3_1:-75811355 | None:intergenic |
| GAACAGATTAACAGTGCTGA+TGG | 0.553866 | 3_1:+75809365 | Msa0375890:CDS |
| GCTTACACCATCTTTGCTTG+AGG | 0.567717 | 3_1:+75809343 | Msa0375890:CDS |
| CTCAGAATCTTGCAGCGAAG+AGG | 0.567938 | 3_1:-75809282 | None:intergenic |
| TTTAGTCTTGGACTTAGAGG+TGG | 0.583231 | 3_1:-75811253 | None:intergenic |
| ATCATTGACTGAGGAAGTAG+AGG | 0.588412 | 3_1:-75811380 | None:intergenic |
| GTCTCCTATTGCTGACGTGG+AGG | 0.609724 | 3_1:+75811432 | Msa0375890:CDS |
| TTACTGTGGAGCGCAACAGA+AGG | 0.616988 | 3_1:+75809408 | Msa0375890:CDS |
| GCTTCAACTTGATTGATGAG+AGG | 0.624063 | 3_1:-75809200 | None:intergenic |
| AAAGTCTCCTATTGCTGACG+TGG | 0.628049 | 3_1:+75811429 | Msa0375890:CDS |
| AAGTACTATTAATGTTAACA+TGG | 0.635453 | 3_1:-75811561 | None:intergenic |
| TAAACGTACCTTGATAGTGA+AGG | 0.635932 | 3_1:-75811605 | None:intergenic |
| ATTGATGTTATCATTGACTG+AGG | 0.636012 | 3_1:-75811389 | None:intergenic |
| GATCAAGCATCAATAATTGG+AGG | 0.643294 | 3_1:+75811094 | Msa0375890:CDS |
| GATAGTGAAGGAGTTCAACA+TGG | 0.664739 | 3_1:-75811593 | None:intergenic |
| AAGGGTTTCTCATATTACTG+TGG | 0.670712 | 3_1:+75809394 | Msa0375890:CDS |
| ACAGTGCTGATGGACAACAA+AGG | 0.726440 | 3_1:+75809375 | Msa0375890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAAATAGCATT+TGG | + | chr3_1:75809634-75809653 | Msa0375890:intron | 10.0% |
| !!! | TAAATTTTTGAACAATTTTT+TGG | - | chr3_1:75810061-75810080 | None:intergenic | 10.0% |
| !!! | TAAGAAAAGTATATAAATAA+AGG | + | chr3_1:75810463-75810482 | Msa0375890:intron | 10.0% |
| !!! | AAGAAAAGTATATAAATAAA+GGG | + | chr3_1:75810464-75810483 | Msa0375890:intron | 10.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3_1:75809747-75809766 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3_1:75809748-75809767 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3_1:75810069-75810088 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3_1:75809969-75809988 | Msa0375890:intron | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr3_1:75810004-75810023 | Msa0375890:intron | 15.0% |
| !! | CTAAAAATGCTATTAAAATT+AGG | + | chr3_1:75810156-75810175 | Msa0375890:intron | 15.0% |
| !! | AATCTTAGAAAAAAAATGAT+GGG | - | chr3_1:75810235-75810254 | None:intergenic | 15.0% |
| !! | TAATCTTAGAAAAAAAATGA+TGG | - | chr3_1:75810236-75810255 | None:intergenic | 15.0% |
| !!! | AGAAAAGTATATAAATAAAG+GGG | + | chr3_1:75810465-75810484 | Msa0375890:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr3_1:75810528-75810547 | Msa0375890:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr3_1:75810529-75810548 | Msa0375890:intron | 15.0% |
| !!! | GACACTTTTTTTAAAAAAAT+GGG | + | chr3_1:75810598-75810617 | Msa0375890:intron | 15.0% |
| !! | TAATGCAACTAATTTAATTA+GGG | + | chr3_1:75811070-75811089 | Msa0375890:intron | 15.0% |
| !! | TATATATGTCAAAAAGTAAA+TGG | + | chr3_1:75811787-75811806 | Msa0375890:intron | 15.0% |
| !! | AAAAGATTGAAAATGGAAAA+AGG | - | chr3_1:75809075-75809094 | None:intergenic | 20.0% |
| !!! | TAAGTGTATATTTGTTTCTA+TGG | + | chr3_1:75809495-75809514 | Msa0375890:intron | 20.0% |
| !!! | AAACACGTTAAAATCATTTT+TGG | + | chr3_1:75809672-75809691 | Msa0375890:intron | 20.0% |
| !!! | AACACGTTAAAATCATTTTT+GGG | + | chr3_1:75809673-75809692 | Msa0375890:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3_1:75810098-75810117 | Msa0375890:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3_1:75810099-75810118 | Msa0375890:intron | 20.0% |
| !! | AAATGCTATTAAAATTAGGT+AGG | + | chr3_1:75810160-75810179 | Msa0375890:intron | 20.0% |
| !! | AATGCTATTAAAATTAGGTA+GGG | + | chr3_1:75810161-75810180 | Msa0375890:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3_1:75810488-75810507 | Msa0375890:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3_1:75810561-75810580 | Msa0375890:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr3_1:75810562-75810581 | Msa0375890:intron | 20.0% |
| !!! | GGACACTTTTTTTAAAAAAA+TGG | + | chr3_1:75810597-75810616 | Msa0375890:intron | 20.0% |
| !! | TTAAATTAGTTGCATTAGAT+GGG | - | chr3_1:75811067-75811086 | None:intergenic | 20.0% |
| !! | ATTAAATTAGTTGCATTAGA+TGG | - | chr3_1:75811068-75811087 | None:intergenic | 20.0% |
| !! | CTAATGCAACTAATTTAATT+AGG | + | chr3_1:75811069-75811088 | Msa0375890:intron | 20.0% |
| !! | AAGTACTATTAATGTTAACA+TGG | - | chr3_1:75811564-75811583 | None:intergenic | 20.0% |
| !!! | TATACTTGATTTTATTGTGA+TGG | - | chr3_1:75811701-75811720 | None:intergenic | 20.0% |
| !! | CCATTCTTATAATATATTAC+TGG | - | chr3_1:75811987-75812006 | None:intergenic | 20.0% |
| !! | CCAGTAATATATTATAAGAA+TGG | + | chr3_1:75811984-75812003 | Msa0375890:intron | 20.0% |
| !!! | ATGGTTTGTAATTAATACTA+TGG | + | chr3_1:75812003-75812022 | Msa0375890:intron | 20.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3_1:75809809-75809828 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3_1:75809810-75809829 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr3_1:75810132-75810151 | Msa0375890:intron | 25.0% |
| ! | ATTTAAGCACAATGAAAACA+TGG | - | chr3_1:75810295-75810314 | None:intergenic | 25.0% |
| ! | TTAACAAGTCAATTACTTAC+TGG | + | chr3_1:75810314-75810333 | Msa0375890:intron | 25.0% |
| ! | TAACAAGTCAATTACTTACT+GGG | + | chr3_1:75810315-75810334 | Msa0375890:intron | 25.0% |
| ! | TATATAAATAAAGGGGAAAG+TGG | + | chr3_1:75810472-75810491 | Msa0375890:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3_1:75810487-75810506 | Msa0375890:intron | 25.0% |
| !!! | ATTTGATTACTTTTTGTGCA+CGG | + | chr3_1:75810855-75810874 | Msa0375890:intron | 25.0% |
| ! | TAAATTAGTTGCATTAGATG+GGG | - | chr3_1:75811066-75811085 | None:intergenic | 25.0% |
| ! | CTATTGAAGAGTAAAAAGAA+AGG | - | chr3_1:75811665-75811684 | None:intergenic | 25.0% |
| !! | CTTTCTTTTTACTCTTCAAT+AGG | + | chr3_1:75811663-75811682 | Msa0375890:intron | 25.0% |
| !! | TTGATGTACTTTAAAAGTAG+TGG | + | chr3_1:75811811-75811830 | Msa0375890:intron | 25.0% |
| ! | ATAACAAAGATAGAGATGTT+TGG | - | chr3_1:75812156-75812175 | None:intergenic | 25.0% |
| GACAAAAAAGGAGGAAATAT+AGG | - | chr3_1:75809048-75809067 | None:intergenic | 30.0% | |
| AGATTGAAAATGGAAAAAGG+TGG | - | chr3_1:75809072-75809091 | None:intergenic | 30.0% | |
| CCATTGGAAAAGATTGAAAA+TGG | - | chr3_1:75809082-75809101 | None:intergenic | 30.0% | |
| ! | CCATTTTCAATCTTTTCCAA+TGG | + | chr3_1:75809079-75809098 | Msa0375890:exon | 30.0% |
| TCATATAAGCTTTCTTCCAT+TGG | - | chr3_1:75809098-75809117 | None:intergenic | 30.0% | |
| TTTGAAGACAGAACAGAATT+TGG | + | chr3_1:75809122-75809141 | Msa0375890:CDS | 30.0% | |
| AACTTGAAACTGAACCTAAA+AGG | + | chr3_1:75809309-75809328 | Msa0375890:CDS | 30.0% | |
| ! | ATGTTAAAGATCACGTTTTG+AGG | + | chr3_1:75809579-75809598 | Msa0375890:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_1:75810192-75810211 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_1:75810191-75810210 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | + | chr3_1:75809872-75809891 | Msa0375890:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr3_1:75810131-75810150 | Msa0375890:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_1:75810191-75810210 | Msa0375890:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_1:75810192-75810211 | Msa0375890:intron | 30.0% |
| AACAAGTCAATTACTTACTG+GGG | + | chr3_1:75810316-75810335 | Msa0375890:intron | 30.0% | |
| TGAGTGATTATGAAGGTTTA+TGG | + | chr3_1:75810343-75810362 | Msa0375890:intron | 30.0% | |
| TAAACTTGCACATCTAAGTA+TGG | - | chr3_1:75810388-75810407 | None:intergenic | 30.0% | |
| TACTTAGATGTGCAAGTTTA+AGG | + | chr3_1:75810388-75810407 | Msa0375890:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr3_1:75810575-75810594 | Msa0375890:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr3_1:75810576-75810595 | Msa0375890:intron | 30.0% |
| AAAAAATGGGTCAGTTATTC+CGG | + | chr3_1:75810611-75810630 | Msa0375890:intron | 30.0% | |
| ACAGCAACAAATTATAATGG+AGG | - | chr3_1:75810664-75810683 | None:intergenic | 30.0% | |
| !! | TCCATTATAATTTGTTGCTG+TGG | + | chr3_1:75810663-75810682 | Msa0375890:intron | 30.0% |
| !! | CCATTATAATTTGTTGCTGT+GGG | + | chr3_1:75810664-75810683 | Msa0375890:intron | 30.0% |
| !! | CATTATAATTTGTTGCTGTG+GGG | + | chr3_1:75810665-75810684 | Msa0375890:intron | 30.0% |
| ! | TCTTTGTTTCTTAGCTTCAA+GGG | - | chr3_1:75811161-75811180 | None:intergenic | 30.0% |
| ! | TTCTTTGTTTCTTAGCTTCA+AGG | - | chr3_1:75811162-75811181 | None:intergenic | 30.0% |
| ! | ATTGATGTTATCATTGACTG+AGG | - | chr3_1:75811392-75811411 | None:intergenic | 30.0% |
| ! | ACAGTTTTCAAAAGAACATG+AGG | - | chr3_1:75811472-75811491 | None:intergenic | 30.0% |
| TATCAAGGTACGTTTATTCT+TGG | + | chr3_1:75811612-75811631 | Msa0375890:intron | 30.0% | |
| GCTACTTATGTGTTCAATTT+AGG | + | chr3_1:75811960-75811979 | Msa0375890:intron | 30.0% | |
| !!! | ATTTTTAGCAGAATGTTTGC+TGG | - | chr3_1:75812097-75812116 | None:intergenic | 30.0% |
| AGCAAACATTCTGCTAAAAA+TGG | + | chr3_1:75812096-75812115 | Msa0375890:exon | 30.0% | |
| GCAAACATTCTGCTAAAAAT+GGG | + | chr3_1:75812097-75812116 | Msa0375890:exon | 30.0% | |
| AAAGATAGAGATGTTTGGTA+AGG | - | chr3_1:75812151-75812170 | None:intergenic | 30.0% | |
| GAAAAAGGTGGAGACAAAAA+AGG | - | chr3_1:75809060-75809079 | None:intergenic | 35.0% | |
| !! | TGATGATCTCTTTGCCATTT+TGG | + | chr3_1:75809151-75809170 | Msa0375890:CDS | 35.0% |
| ATCTTCTAGACTCTCCAAAA+TGG | - | chr3_1:75809168-75809187 | None:intergenic | 35.0% | |
| TACTACTCCAAAAGAGAATG+AGG | + | chr3_1:75809223-75809242 | Msa0375890:CDS | 35.0% | |
| AAGGGTTTCTCATATTACTG+TGG | + | chr3_1:75809394-75809413 | Msa0375890:CDS | 35.0% | |
| ! | ATGAGCACTTGTCTGTTTTA+AGG | + | chr3_1:75809441-75809460 | Msa0375890:CDS | 35.0% |
| !! | TGCCTTGCTTTTATGTCAAA+AGG | + | chr3_1:75809471-75809490 | Msa0375890:CDS | 35.0% |
| !! | GCCTTGCTTTTATGTCAAAA+GGG | + | chr3_1:75809472-75809491 | Msa0375890:CDS | 35.0% |
| ! | ACCCTTTTGACATAAAAGCA+AGG | - | chr3_1:75809476-75809495 | None:intergenic | 35.0% |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3_1:75809732-75809751 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr3_1:75810428-75810447 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr3_1:75810429-75810448 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr3_1:75810442-75810461 | None:intergenic | 35.0% | |
| AAAAATGGGTCAGTTATTCC+GGG | + | chr3_1:75810612-75810631 | Msa0375890:intron | 35.0% | |
| CCCACAGCAACAAATTATAA+TGG | - | chr3_1:75810667-75810686 | None:intergenic | 35.0% | |
| !! | GCATTGATTGCATAACTACA+AGG | - | chr3_1:75810907-75810926 | None:intergenic | 35.0% |
| GTAGTTATGCAATCAATGCA+TGG | + | chr3_1:75810908-75810927 | Msa0375890:intron | 35.0% | |
| GGAGATCAAGCATCAATAAT+TGG | + | chr3_1:75811091-75811110 | Msa0375890:CDS | 35.0% | |
| GATCAAGCATCAATAATTGG+AGG | + | chr3_1:75811094-75811113 | Msa0375890:CDS | 35.0% | |
| !! | AAGTTTAGTCTTGGACTTAG+AGG | - | chr3_1:75811259-75811278 | None:intergenic | 35.0% |
| CTAATTGGCAAGTTTAGTCT+TGG | - | chr3_1:75811268-75811287 | None:intergenic | 35.0% | |
| !! | ATGTAGCTTTGTTGCATTCT+TGG | - | chr3_1:75811325-75811344 | None:intergenic | 35.0% |
| ATAATCTTCAAAGCTTGTCC+TGG | - | chr3_1:75811508-75811527 | None:intergenic | 35.0% | |
| !! | TAAACGTACCTTGATAGTGA+AGG | - | chr3_1:75811608-75811627 | None:intergenic | 35.0% |
| TCACAGTAAAAAACTGCACT+AGG | - | chr3_1:75811756-75811775 | None:intergenic | 35.0% | |
| TGAGGACAAATGTCTGAATA+AGG | - | chr3_1:75811896-75811915 | None:intergenic | 35.0% | |
| ! | ATACGTCTTTTCAGCAAATG+AGG | - | chr3_1:75811914-75811933 | None:intergenic | 35.0% |
| ACATTTCTGCATTCTGTCTC+TGG | + | chr3_1:75808981-75809000 | Msa0375890:five_prime_UTR | 40.0% | |
| AAAGGTGGAGACAAAAAAGG+AGG | - | chr3_1:75809057-75809076 | None:intergenic | 40.0% | |
| GCTTCAACTTGATTGATGAG+AGG | - | chr3_1:75809203-75809222 | None:intergenic | 40.0% | |
| ! | GAAGTGACCTCATTCTCTTT+TGG | - | chr3_1:75809233-75809252 | None:intergenic | 40.0% |
| ! | AGCTTCTGTCTCTTCCTTTT+AGG | - | chr3_1:75809326-75809345 | None:intergenic | 40.0% |
| ATCTGTTCCTCAAGCAAAGA+TGG | - | chr3_1:75809353-75809372 | None:intergenic | 40.0% | |
| ! | GAACAGATTAACAGTGCTGA+TGG | + | chr3_1:75809365-75809384 | Msa0375890:CDS | 40.0% |
| AGGTAGGGACTAAACTTACA+AGG | + | chr3_1:75810176-75810195 | Msa0375890:intron | 40.0% | |
| GGGTCAATGAGTGATTATGA+AGG | + | chr3_1:75810336-75810355 | Msa0375890:intron | 40.0% | |
| TGCACATCTAAGTATGGTAG+AGG | - | chr3_1:75810382-75810401 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr3_1:75810426-75810445 | Msa0375890:intron | 40.0% | |
| !! | CGGAGAGAGTATCAAAGATA+TGG | + | chr3_1:75810636-75810655 | Msa0375890:intron | 40.0% |
| TTCCCCGAGAATAGAAAATC+CGG | - | chr3_1:75810883-75810902 | None:intergenic | 40.0% | |
| TGCAATCAATGCATGGAAGA+TGG | + | chr3_1:75810915-75810934 | Msa0375890:intron | 40.0% | |
| CTTGGACTTGGAACTAATCT+TGG | - | chr3_1:75811208-75811227 | None:intergenic | 40.0% | |
| TTTCTTGGACTTAGTGGTGA+AGG | - | chr3_1:75811232-75811251 | None:intergenic | 40.0% | |
| !! | TTTAGTCTTGGACTTAGAGG+TGG | - | chr3_1:75811256-75811275 | None:intergenic | 40.0% |
| TGTGGAGTTCTTGGACTAAT+TGG | - | chr3_1:75811283-75811302 | None:intergenic | 40.0% | |
| !! | TTGTAAGGACTAGTTGGTTG+TGG | - | chr3_1:75811301-75811320 | None:intergenic | 40.0% |
| !! | TGTTGCATTCTTGGCTTGTA+AGG | - | chr3_1:75811316-75811335 | None:intergenic | 40.0% |
| ! | ATCATTGACTGAGGAAGTAG+AGG | - | chr3_1:75811383-75811402 | None:intergenic | 40.0% |
| ! | ACTGTTTCTCAACGAATTCC+AGG | + | chr3_1:75811487-75811506 | Msa0375890:CDS | 40.0% |
| GATAGTGAAGGAGTTCAACA+TGG | - | chr3_1:75811596-75811615 | None:intergenic | 40.0% | |
| GTTGAACTCCTTCACTATCA+AGG | + | chr3_1:75811597-75811616 | Msa0375890:CDS | 40.0% | |
| TATATTTCACTGCACCTCTC+TGG | + | chr3_1:75811839-75811858 | Msa0375890:intron | 40.0% | |
| ATATTTCACTGCACCTCTCT+GGG | + | chr3_1:75811840-75811859 | Msa0375890:intron | 40.0% | |
| GATGCATGTTACATGTACCT+TGG | - | chr3_1:75811869-75811888 | None:intergenic | 40.0% | |
| ! | CTGCTGCTTCTGTCATCTAA+CGG | + | chr3_1:75809005-75809024 | Msa0375890:five_prime_UTR | 45.0% |
| GCTTACACCATCTTTGCTTG+AGG | + | chr3_1:75809343-75809362 | Msa0375890:CDS | 45.0% | |
| !! | ACAGTGCTGATGGACAACAA+AGG | + | chr3_1:75809375-75809394 | Msa0375890:CDS | 45.0% |
| !! | CAGTGCTGATGGACAACAAA+GGG | + | chr3_1:75809376-75809395 | Msa0375890:CDS | 45.0% |
| ATGGTAGAGGTCACTTGTCT+AGG | - | chr3_1:75810369-75810388 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr3_1:75810424-75810443 | None:intergenic | 45.0% | |
| AAAAAGAGCTGCGTGAATGC+AGG | - | chr3_1:75810691-75810710 | None:intergenic | 45.0% | |
| !!! | TTACTTTTTGTGCACGGACC+CGG | + | chr3_1:75810861-75810880 | Msa0375890:intron | 45.0% |
| ! | GGACCCGGATTTTCTATTCT+CGG | + | chr3_1:75810876-75810895 | Msa0375890:intron | 45.0% |
| ! | GACCCGGATTTTCTATTCTC+GGG | + | chr3_1:75810877-75810896 | Msa0375890:intron | 45.0% |
| ! | ACCCGGATTTTCTATTCTCG+GGG | + | chr3_1:75810878-75810897 | Msa0375890:intron | 45.0% |
| TCCCCGAGAATAGAAAATCC+GGG | - | chr3_1:75810882-75810901 | None:intergenic | 45.0% | |
| GATGGGGTGCATAAAGGAAA+TGG | - | chr3_1:75811050-75811069 | None:intergenic | 45.0% | |
| GCATTAGATGGGGTGCATAA+AGG | - | chr3_1:75811056-75811075 | None:intergenic | 45.0% | |
| GTTTCTTAGCTTCAAGGGCT+TGG | - | chr3_1:75811156-75811175 | None:intergenic | 45.0% | |
| ! | GGTGGTTTTCTTGGACTTAG+TGG | - | chr3_1:75811238-75811257 | None:intergenic | 45.0% |
| ! | GGACTTAGAGGTGGTTTTCT+TGG | - | chr3_1:75811247-75811266 | None:intergenic | 45.0% |
| CTAGTTGGTTGTGGAGTTCT+TGG | - | chr3_1:75811292-75811311 | None:intergenic | 45.0% | |
| !! | CTTGGCTTGTAAGGACTAGT+TGG | - | chr3_1:75811307-75811326 | None:intergenic | 45.0% |
| CTAGTAGGAGATGGATCAAG+AGG | - | chr3_1:75811358-75811377 | None:intergenic | 45.0% | |
| GTAGAGGAACTAGTAGGAGA+TGG | - | chr3_1:75811367-75811386 | None:intergenic | 45.0% | |
| GAGGAAGTAGAGGAACTAGT+AGG | - | chr3_1:75811373-75811392 | None:intergenic | 45.0% | |
| AAAGTCTCCTATTGCTGACG+TGG | + | chr3_1:75811429-75811448 | Msa0375890:CDS | 45.0% | |
| TATTTCACTGCACCTCTCTG+GGG | + | chr3_1:75811841-75811860 | Msa0375890:intron | 45.0% | |
| CAAGTTCTTCAGCACTCAGT+TGG | - | chr3_1:75812064-75812083 | None:intergenic | 45.0% | |
| GATGTTTGGTAAGGAGAGTG+TGG | - | chr3_1:75812142-75812161 | None:intergenic | 45.0% | |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3_1:75809776-75809795 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3_1:75809777-75809796 | None:intergenic | 5.0% |
| !! | ATTAATTTATTTATATAGAT+TGG | + | chr3_1:75812029-75812048 | Msa0375890:intron | 5.0% |
| GGTCACTTCGACATCGAGAT+TGG | + | chr3_1:75809244-75809263 | Msa0375890:CDS | 50.0% | |
| CTCAGAATCTTGCAGCGAAG+AGG | - | chr3_1:75809285-75809304 | None:intergenic | 50.0% | |
| TTACTGTGGAGCGCAACAGA+AGG | + | chr3_1:75809408-75809427 | Msa0375890:CDS | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | - | chr3_1:75810420-75810439 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr3_1:75810616-75810635 | Msa0375890:intron | 50.0% | |
| CTTTGATACTCTCTCCGTCC+CGG | - | chr3_1:75810633-75810652 | None:intergenic | 50.0% | |
| AGTGGTGAAGGTCTTGGACT+TGG | - | chr3_1:75811220-75811239 | None:intergenic | 50.0% | |
| GGACTTAGTGGTGAAGGTCT+TGG | - | chr3_1:75811226-75811245 | None:intergenic | 50.0% | |
| TTGACCTCCACGTCAGCAAT+AGG | - | chr3_1:75811439-75811458 | None:intergenic | 50.0% | |
| ! | GACGTGGAGGTCAAGTTTTC+AGG | + | chr3_1:75811445-75811464 | Msa0375890:CDS | 50.0% |
| AAGGTATACTCCCTCCGTCC+CGG | + | chr3_1:75810407-75810426 | Msa0375890:intron | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr3_1:75810421-75810440 | None:intergenic | 55.0% | |
| GTCTCCTATTGCTGACGTGG+AGG | + | chr3_1:75811432-75811451 | Msa0375890:CDS | 55.0% | |
| TGTACCTTGGCACCCCAGAG+AGG | - | chr3_1:75811856-75811875 | None:intergenic | 60.0% | |
| !! | TGCACCTCTCTGGGGTGCCA+AGG | + | chr3_1:75811849-75811868 | Msa0375890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75808955 | 75812248 | 75808955 | ID=Msa0375890;Name=Msa0375890 |
| chr3_1 | mRNA | 75808955 | 75812248 | 75808955 | ID=Msa0375890-mRNA-1;Parent=Msa0375890;Name=Msa0375890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=143|1|1|1|1|1|3|136|329 |
| chr3_1 | exon | 75808955 | 75809493 | 75808955 | ID=Msa0375890-mRNA-1:exon:17821;Parent=Msa0375890-mRNA-1 |
| chr3_1 | exon | 75811091 | 75811618 | 75811091 | ID=Msa0375890-mRNA-1:exon:17822;Parent=Msa0375890-mRNA-1 |
| chr3_1 | exon | 75812047 | 75812248 | 75812047 | ID=Msa0375890-mRNA-1:exon:17823;Parent=Msa0375890-mRNA-1 |
| chr3_1 | five_prime_UTR | 75808955 | 75809097 | 75808955 | ID=Msa0375890-mRNA-1:five_prime_utr;Parent=Msa0375890-mRNA-1 |
| chr3_1 | CDS | 75809098 | 75809493 | 75809098 | ID=Msa0375890-mRNA-1:cds;Parent=Msa0375890-mRNA-1 |
| chr3_1 | CDS | 75811091 | 75811618 | 75811091 | ID=Msa0375890-mRNA-1:cds;Parent=Msa0375890-mRNA-1 |
| chr3_1 | CDS | 75812047 | 75812112 | 75812047 | ID=Msa0375890-mRNA-1:cds;Parent=Msa0375890-mRNA-1 |
| chr3_1 | three_prime_UTR | 75812113 | 75812248 | 75812113 | ID=Msa0375890-mRNA-1:three_prime_utr;Parent=Msa0375890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
