Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463250 | XP_013469773.1 | 98.729 | 472 | 6 | 0 | 1 | 472 | 1 | 472 | 0.0 | 961 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463250 | sp|P52410|KASC1_ARATH | 82.427 | 478 | 73 | 3 | 1 | 472 | 1 | 473 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463250 | A0A072VQ81 | 98.729 | 472 | 6 | 0 | 1 | 472 | 1 | 472 | 0.0 | 961 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040180 | Msa1463250 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
| Msa0087870 | Msa1463250 | 0.862703 | 4.200452e-64 | -8.615850e-47 |
| Msa0475840 | Msa1463250 | 0.856270 | 3.604981e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463250 | MtrunA17_Chr1g0204841 | 98.729 | 472 | 6 | 0 | 1 | 472 | 1 | 472 | 0.0 | 961 |
| Msa1463250 | MtrunA17_Chr4g0052121 | 82.489 | 474 | 73 | 5 | 1 | 472 | 1 | 466 | 0.0 | 764 |
| Msa1463250 | MtrunA17_Chr8g0388511 | 74.674 | 383 | 97 | 0 | 45 | 427 | 2 | 384 | 0.0 | 617 |
| Msa1463250 | MtrunA17_Chr2g0301361 | 56.195 | 452 | 192 | 4 | 22 | 471 | 41 | 488 | 2.23e-176 | 503 |
| Msa1463250 | MtrunA17_Chr4g0070171 | 58.000 | 400 | 166 | 2 | 73 | 471 | 93 | 491 | 7.57e-170 | 487 |
| Msa1463250 | MtrunA17_Chr8g0388531 | 70.476 | 210 | 62 | 0 | 31 | 240 | 16 | 225 | 8.74e-105 | 311 |
| Msa1463250 | MtrunA17_Chr8g0388551 | 54.198 | 262 | 68 | 2 | 31 | 292 | 8 | 217 | 4.29e-93 | 285 |
| Msa1463250 | MtrunA17_Chr1g0183091 | 38.479 | 434 | 240 | 7 | 60 | 468 | 37 | 468 | 5.54e-90 | 282 |
| Msa1463250 | MtrunA17_Chr8g0388561 | 71.676 | 173 | 46 | 1 | 300 | 472 | 1 | 170 | 2.31e-87 | 265 |
| Msa1463250 | MtrunA17_Chr8g0388541 | 81.690 | 71 | 13 | 0 | 357 | 427 | 55 | 125 | 1.57e-34 | 125 |
| Msa1463250 | MtrunA17_Chr8g0388541 | 62.500 | 72 | 27 | 0 | 245 | 316 | 1 | 72 | 4.20e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463250 | AT5G46290.1 | 82.427 | 478 | 73 | 3 | 1 | 472 | 1 | 473 | 0.0 | 813 |
| Msa1463250 | AT5G46290.3 | 79.757 | 494 | 73 | 4 | 1 | 472 | 1 | 489 | 0.0 | 804 |
| Msa1463250 | AT5G46290.2 | 70.711 | 478 | 74 | 5 | 1 | 472 | 1 | 418 | 0.0 | 666 |
| Msa1463250 | AT1G74960.1 | 52.967 | 455 | 203 | 3 | 27 | 471 | 88 | 541 | 7.69e-169 | 486 |
| Msa1463250 | AT1G74960.3 | 52.967 | 455 | 203 | 3 | 27 | 471 | 88 | 541 | 7.69e-169 | 486 |
| Msa1463250 | AT1G74960.2 | 52.967 | 455 | 203 | 3 | 27 | 471 | 88 | 541 | 7.69e-169 | 486 |
| Msa1463250 | AT2G04540.1 | 38.391 | 435 | 238 | 9 | 60 | 469 | 31 | 460 | 1.72e-82 | 263 |
Find 94 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTATTATTGCTGAATATT+TGG | 0.107826 | tig0043065:+1703 | Msa1463250:CDS |
| TCCTTATGCTATTACAAATA+TGG | 0.113394 | tig0043065:+831 | Msa1463250:CDS |
| GCTTTACTTGGGATTGATTT+AGG | 0.219677 | tig0043065:+859 | Msa1463250:CDS |
| GCAGTTGAAATAGAATAATT+TGG | 0.222982 | tig0043065:-892 | Msa1463250:intergenic |
| CCAGGCTTGTCTTCTCTTCA+TGG | 0.229377 | tig0043065:+5235 | Msa1463250:three_prime_UTR |
| GGGAGAAGGTTCTGGAGTTT+TGG | 0.264837 | tig0043065:+1122 | Msa1463250:CDS |
| TTTGTTATGGGAGAAGGTTC+TGG | 0.272709 | tig0043065:+1114 | Msa1463250:CDS |
| CTCGCTTCATGGCATGTTCC+AGG | 0.286379 | tig0043065:-1676 | Msa1463250:intergenic |
| CCTATTATTGCTGAATATTT+GGG | 0.287910 | tig0043065:+1704 | Msa1463250:CDS |
| TGCGATTATTCCAATTGGTT+TGG | 0.288023 | tig0043065:+1005 | Msa1463250:CDS |
| AGTTCTACAGCAAAAGTCTT+TGG | 0.290799 | tig0043065:-5393 | Msa1463250:intergenic |
| TATATCTTTAATTAACAATA+AGG | 0.294362 | tig0043065:-5500 | Msa1463250:intergenic |
| TTCCACTCTTGCTGGTGATT+TGG | 0.297104 | tig0043065:+3846 | Msa1463250:CDS |
| GGTCACTGTCTTGGTGCAGC+TGG | 0.308174 | tig0043065:+4065 | Msa1463250:CDS |
| ATGACCCTAAAACTGCTTCT+AGG | 0.311296 | tig0043065:+1067 | Msa1463250:CDS |
| CCAGGCATTTCAAATTCATT+TGG | 0.314348 | tig0043065:+5160 | Msa1463250:intron |
| CCTTATGCTATTACAAATAT+GGG | 0.317643 | tig0043065:+832 | Msa1463250:CDS |
| ATTTCAAATTCATTTGGATT+TGG | 0.319137 | tig0043065:+5166 | Msa1463250:CDS |
| TCAAAATCAACTGCAGGTTC+TGG | 0.321272 | tig0043065:-4970 | Msa1463250:intergenic |
| TGGGTGGTTTCGTTGCTTGC+AGG | 0.323684 | tig0043065:+1025 | Msa1463250:CDS |
| CCCAAATATTCAGCAATAAT+AGG | 0.335330 | tig0043065:-1704 | Msa1463250:intergenic |
| GTTAAGAATTTGATTGAAAA+GGG | 0.338451 | tig0043065:+781 | Msa1463250:CDS |
| GCGATTATTCCAATTGGTTT+GGG | 0.344160 | tig0043065:+1006 | Msa1463250:CDS |
| GGAGATTAATGCTATCAAAA+AGG | 0.351656 | tig0043065:+3870 | Msa1463250:CDS |
| AGCATATAATGAACAATTAC+AGG | 0.353040 | tig0043065:-5348 | Msa1463250:intergenic |
| GCACGAAGATTTCATTGGTT+TGG | 0.355311 | tig0043065:+5428 | Msa1463250:three_prime_UTR |
| ATGCAGCCATCCTGTTGTTA+TGG | 0.364668 | tig0043065:-4117 | Msa1463250:intergenic |
| AATATGGGTTCAGCTTTACT+TGG | 0.368154 | tig0043065:+847 | Msa1463250:CDS |
| GCTTTCAGGCCCTGATTGCC+AGG | 0.377973 | tig0043065:+5217 | Msa1463250:exon |
| GTCACTGTCTTGGTGCAGCT+GGG | 0.379436 | tig0043065:+4066 | Msa1463250:CDS |
| CACTCTTGCTGGTGATTTGG+CGG | 0.382291 | tig0043065:+3849 | Msa1463250:CDS |
| CAAAAGTCTTTGGAGCTAAC+TGG | 0.385274 | tig0043065:-5383 | Msa1463250:intergenic |
| AGTTAAGAATTTGATTGAAA+AGG | 0.392053 | tig0043065:+780 | Msa1463250:CDS |
| TAAGGAACGTGCTGGCGTTT+TGG | 0.393874 | tig0043065:+717 | Msa1463250:CDS |
| CGGCATCTTCAAGGCTGCTC+TGG | 0.394560 | tig0043065:-1799 | Msa1463250:intergenic |
| AATAGGTGCACCTCGCTTCA+TGG | 0.395532 | tig0043065:-1687 | Msa1463250:intergenic |
| TCTTGTTATTGAATTGTTGT+CGG | 0.410900 | tig0043065:+5544 | Msa1463250:three_prime_UTR |
| AGAAGACAAGCCTGGCAATC+AGG | 0.414753 | tig0043065:-5227 | Msa1463250:intergenic |
| CTAAAACTGCTTCTAGGCCT+TGG | 0.415317 | tig0043065:+1073 | Msa1463250:CDS |
| CATGCAACTTCCACTCTTGC+TGG | 0.426755 | tig0043065:+3838 | Msa1463250:CDS |
| TCAAATTCATTTGGATTTGG+TGG | 0.432807 | tig0043065:+5169 | Msa1463250:CDS |
| CCCATATTTGTAATAGCATA+AGG | 0.436887 | tig0043065:-832 | Msa1463250:intergenic |
| ACGCCGAGTCCGTCAGATCT+TGG | 0.446626 | tig0043065:-1764 | Msa1463250:intergenic |
| ACGAAACCACCCAAACCAAT+TGG | 0.448666 | tig0043065:-1015 | Msa1463250:intergenic |
| CTCACCTCTACGAATGTGAT+TGG | 0.450144 | tig0043065:-950 | Msa1463250:intergenic |
| CGTACGAATTGATTGATTGA+GGG | 0.453619 | tig0043065:-4140 | Msa1463250:intergenic |
| AGTGTCGAGAGAGCTTATTT+AGG | 0.462874 | tig0043065:+5470 | Msa1463250:three_prime_UTR |
| TAAAACTGCTTCTAGGCCTT+GGG | 0.469150 | tig0043065:+1074 | Msa1463250:CDS |
| TTCACAGGTATTGGAAAGCC+TGG | 0.471523 | tig0043065:+1658 | Msa1463250:intron |
| ATGTAGCACGAAGATTTCAT+TGG | 0.475677 | tig0043065:+5423 | Msa1463250:three_prime_UTR |
| CACTGTCTTGGTGCAGCTGG+GGG | 0.477386 | tig0043065:+4068 | Msa1463250:CDS |
| GAGACACACCGGCATCTTCA+AGG | 0.486243 | tig0043065:-1808 | Msa1463250:intergenic |
| CTGTGATATCAGTCTATGAT+AGG | 0.488568 | tig0043065:+4044 | Msa1463250:intron |
| CGCCAAATCACCAGCAAGAG+TGG | 0.490695 | tig0043065:-3848 | Msa1463250:intergenic |
| GAGGCTGCGATTATTCCAAT+TGG | 0.500761 | tig0043065:+1000 | Msa1463250:CDS |
| ACAGTGAAAGCCATAACAAC+AGG | 0.502710 | tig0043065:+4107 | Msa1463250:CDS |
| ACGTACGAATTGATTGATTG+AGG | 0.504368 | tig0043065:-4141 | Msa1463250:intergenic |
| TCACTGTCTTGGTGCAGCTG+GGG | 0.507952 | tig0043065:+4067 | Msa1463250:CDS |
| GAATGAAACAGTACCTCCTC+AGG | 0.510763 | tig0043065:-1830 | Msa1463250:intergenic |
| GGGTGGTTTCGTTGCTTGCA+GGG | 0.511680 | tig0043065:+1026 | Msa1463250:CDS |
| GAAGACAAGCCTGGCAATCA+GGG | 0.514627 | tig0043065:-5226 | Msa1463250:intergenic |
| CAGCAGCATGAAATTAATGT+TGG | 0.518157 | tig0043065:+5012 | Msa1463250:CDS |
| CCATGAAGAGAAGACAAGCC+TGG | 0.530949 | tig0043065:-5235 | Msa1463250:intergenic |
| TTGTTCTCTCTACGTCATTG+AGG | 0.533118 | tig0043065:+5287 | Msa1463250:three_prime_UTR |
| CAGATTGATAAGGAACGTGC+TGG | 0.538608 | tig0043065:+709 | Msa1463250:intron |
| ATATGGGTTCAGCTTTACTT+GGG | 0.548003 | tig0043065:+848 | Msa1463250:CDS |
| TCTATGATAGGTCACTGTCT+TGG | 0.557980 | tig0043065:+4056 | Msa1463250:CDS |
| ATTATTCCAATTGGTTTGGG+TGG | 0.559742 | tig0043065:+1009 | Msa1463250:CDS |
| TGGCAATCAGGGCCTGAAAG+CGG | 0.566778 | tig0043065:-5215 | Msa1463250:intergenic |
| AATCGCAGCCTCAGTCCCAC+CGG | 0.576961 | tig0043065:-989 | Msa1463250:intergenic |
| ATGACTGATCCAAGATCTGA+CGG | 0.577090 | tig0043065:+1755 | Msa1463250:CDS |
| ATGACATGCTAATACCTTGG+TGG | 0.577600 | tig0043065:-3926 | Msa1463250:intergenic |
| CAGAGCAGCCTTGAAGATGC+CGG | 0.581799 | tig0043065:+1800 | Msa1463250:CDS |
| ACTGTATCAAAATCAACTGC+AGG | 0.584010 | tig0043065:-4976 | Msa1463250:intergenic |
| TGGTGGACACAACTCTGTCG+TGG | 0.588850 | tig0043065:+5186 | Msa1463250:CDS |
| TTGGTTGGATCAGGAATGGG+TGG | 0.590587 | tig0043065:+736 | Msa1463250:CDS |
| CCATCACGTTCTTTATCCCA+AGG | 0.592200 | tig0043065:-1090 | Msa1463250:intergenic |
| ATTATTGCTGAATATTTGGG+AGG | 0.597683 | tig0043065:+1707 | Msa1463250:CDS |
| GAGGCTGATTTGATGATAGC+CGG | 0.603068 | tig0043065:+970 | Msa1463250:CDS |
| TGCCGGTGTGTCTCCTGAGG+AGG | 0.610564 | tig0043065:+1817 | Msa1463250:CDS |
| CCTTGGGATAAAGAACGTGA+TGG | 0.624852 | tig0043065:+1090 | Msa1463250:CDS |
| CATCAAAATAAATGCCACCA+AGG | 0.629679 | tig0043065:+3912 | Msa1463250:CDS |
| TGTTGTTATGGCTTTCACTG+TGG | 0.642977 | tig0043065:-4105 | Msa1463250:intergenic |
| CAATCACATTCGTAGAGGTG+AGG | 0.648046 | tig0043065:+951 | Msa1463250:CDS |
| CTGGAACATGCCATGAAGCG+AGG | 0.648287 | tig0043065:+1677 | Msa1463250:CDS |
| GATCCAAGATCTGACGGACT+CGG | 0.649080 | tig0043065:+1761 | Msa1463250:CDS |
| TACCTCCTCAGGAGACACAC+CGG | 0.652572 | tig0043065:-1819 | Msa1463250:intergenic |
| CTGATTTGATGATAGCCGGT+GGG | 0.653774 | tig0043065:+974 | Msa1463250:CDS |
| GATGATAGCCGGTGGGACTG+AGG | 0.658607 | tig0043065:+981 | Msa1463250:CDS |
| ATTGGTTTGGAGTTATACAG+CGG | 0.667298 | tig0043065:+5441 | Msa1463250:three_prime_UTR |
| TGAAAGCCATAACAACAGGA+TGG | 0.674758 | tig0043065:+4111 | Msa1463250:CDS |
| AGATGCCGGTGTGTCTCCTG+AGG | 0.678881 | tig0043065:+1814 | Msa1463250:CDS |
| GCTGATTTGATGATAGCCGG+TGG | 0.696770 | tig0043065:+973 | Msa1463250:CDS |
| GCTGCCAATCACATTCGTAG+AGG | 0.700168 | tig0043065:+946 | Msa1463250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATCTTTAATTAACAATA+AGG | - | tig0043065:5503-5522 | Msa1463250:intergenic | 10.0% |
| !! | AAATTTGAAAATCCAATTTA+AGG | - | tig0043065:675-694 | Msa1463250:intergenic | 15.0% |
| !! | GCTAAAATTATCTATTTAAA+TGG | + | tig0043065:1879-1898 | Msa1463250:intron | 15.0% |
| !! | ATTTAATCCTATGATAAATA+GGG | + | tig0043065:2296-2315 | Msa1463250:intron | 15.0% |
| !!! | CTATTATCATTTTTCTTTTT+TGG | + | tig0043065:2504-2523 | Msa1463250:intron | 15.0% |
| !! | ACATAATAAAATTCATCTAT+TGG | + | tig0043065:3578-3597 | Msa1463250:intron | 15.0% |
| !!! | TATTTAATTCTTTGTTTTTC+AGG | + | tig0043065:4165-4184 | Msa1463250:intron | 15.0% |
| !! | AGTAAAAAAATAATTAACGA+TGG | + | tig0043065:4343-4362 | Msa1463250:intron | 15.0% |
| !! | TAAATAAGGTTATTATTGAA+CGG | - | tig0043065:4562-4581 | Msa1463250:intergenic | 15.0% |
| !! | AAAAATAAAGGGATAAAATA+CGG | - | tig0043065:4759-4778 | Msa1463250:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGAAGGAAA+AGG | - | tig0043065:5120-5139 | Msa1463250:intergenic | 15.0% |
| !!! | GTTAGTTTTTTTTTTTTTGA+AGG | - | tig0043065:5126-5145 | Msa1463250:intergenic | 15.0% |
| !! | TCAAAAAAAAAAAAACTAAC+TGG | + | tig0043065:5126-5145 | Msa1463250:intron | 15.0% |
| !!! | ACTACAACTTTTATATATTA+TGG | - | tig0043065:5328-5347 | Msa1463250:intergenic | 15.0% |
| !!! | TGGTATTTAATGTATTTTGA+CGG | - | tig0043065:27-46 | None:intergenic | 20.0% |
| !! | AGTTAAGAATTTGATTGAAA+AGG | + | tig0043065:780-799 | Msa1463250:CDS | 20.0% |
| !! | GTTAAGAATTTGATTGAAAA+GGG | + | tig0043065:781-800 | Msa1463250:CDS | 20.0% |
| !! | ATAGCATAAGGAATAAAAAA+AGG | - | tig0043065:823-842 | Msa1463250:intergenic | 20.0% |
| !!! | GTTACATTGATTAACAATAT+GGG | + | tig0043065:1202-1221 | Msa1463250:intron | 20.0% |
| !!! | TTACATTGATTAACAATATG+GGG | + | tig0043065:1203-1222 | Msa1463250:intron | 20.0% |
| !!! | GGTTTAGAATTATTCTTTTT+TGG | - | tig0043065:1537-1556 | Msa1463250:intergenic | 20.0% |
| !!! | ATATAGAAATTAGCTTGTAT+AGG | - | tig0043065:1618-1637 | Msa1463250:intergenic | 20.0% |
| !! | TTATCTATTTAAATGGTTGT+TGG | + | tig0043065:1886-1905 | Msa1463250:intron | 20.0% |
| !! | AGGAAAAAAATGAATCAAAT+GGG | - | tig0043065:1922-1941 | Msa1463250:intergenic | 20.0% |
| !! | TTAATAGATGTGAAAAAGTT+AGG | + | tig0043065:2149-2168 | Msa1463250:intron | 20.0% |
| !! | CATTTAATCCTATGATAAAT+AGG | + | tig0043065:2295-2314 | Msa1463250:intron | 20.0% |
| !!! | TTTTTGTTTATAAATGTGAC+CGG | - | tig0043065:3173-3192 | Msa1463250:intergenic | 20.0% |
| !!! | TTTTTGTTTATAAATGTGAC+CGG | + | tig0043065:3173-3192 | Msa1463250:intron | 20.0% |
| !!! | TATTATGTTTTGATCAGTAT+TGG | - | tig0043065:3566-3585 | Msa1463250:intergenic | 20.0% |
| !! | AAAAAAATAATTAACGATGG+TGG | + | tig0043065:4346-4365 | Msa1463250:intron | 20.0% |
| !! | AAAAAATAATTAACGATGGT+GGG | + | tig0043065:4347-4366 | Msa1463250:intron | 20.0% |
| !! | TCTCCATTTATGAAAATAAA+GGG | - | tig0043065:4436-4455 | Msa1463250:intergenic | 20.0% |
| !!! | CTCATTTTATCTTTCAATAA+TGG | + | tig0043065:4482-4501 | Msa1463250:intron | 20.0% |
| !!! | TTATTTGTCATTTAAGACAA+TGG | - | tig0043065:4707-4726 | Msa1463250:intergenic | 20.0% |
| !! | TGTCTTAAATGACAAATAAA+AGG | + | tig0043065:4708-4727 | Msa1463250:intron | 20.0% |
| !! | ATTTCAAATTCATTTGGATT+TGG | + | tig0043065:5166-5185 | Msa1463250:CDS | 20.0% |
| !! | GACAAGTTGTTATTAATCTT+TGG | - | tig0043065:47-66 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGCAGATTGATA+AGG | + | tig0043065:699-718 | Msa1463250:intron | 25.0% |
| ! | TCCTTATGCTATTACAAATA+TGG | + | tig0043065:831-850 | Msa1463250:CDS | 25.0% |
| ! | CCTTATGCTATTACAAATAT+GGG | + | tig0043065:832-851 | Msa1463250:CDS | 25.0% |
| ! | GCAGTTGAAATAGAATAATT+TGG | - | tig0043065:895-914 | Msa1463250:intergenic | 25.0% |
| ! | ACAAGAAGAAGAAAACATTA+AGG | - | tig0043065:1171-1190 | Msa1463250:intergenic | 25.0% |
| !! | GGTTACATTGATTAACAATA+TGG | + | tig0043065:1201-1220 | Msa1463250:intron | 25.0% |
| !! | TACATTGATTAACAATATGG+GGG | + | tig0043065:1204-1223 | Msa1463250:intron | 25.0% |
| ! | ACCTATTATTGCTGAATATT+TGG | + | tig0043065:1703-1722 | Msa1463250:CDS | 25.0% |
| ! | CCTATTATTGCTGAATATTT+GGG | + | tig0043065:1704-1723 | Msa1463250:CDS | 25.0% |
| ! | GAGGAAAAAAATGAATCAAA+TGG | - | tig0043065:1923-1942 | Msa1463250:intergenic | 25.0% |
| !!! | ATTTTAGTACACGATACAAT+AGG | + | tig0043065:2018-2037 | Msa1463250:intron | 25.0% |
| !! | TTTTAGTACACGATACAATA+GGG | + | tig0043065:2019-2038 | Msa1463250:intron | 25.0% |
| ! | GTCTTCCAATTACATAAATT+AGG | + | tig0043065:2180-2199 | Msa1463250:intron | 25.0% |
| ! | TGCATCCTAATTTATGTAAT+TGG | - | tig0043065:2188-2207 | Msa1463250:intergenic | 25.0% |
| ! | AAATGCAAGAAAAATATGCA+CGG | + | tig0043065:2331-2350 | Msa1463250:intron | 25.0% |
| ! | AACTTGAATCATGAAGAAAA+AGG | + | tig0043065:2635-2654 | Msa1463250:intron | 25.0% |
| !! | CCTTTATTTCATCAAGAATA+TGG | - | tig0043065:2949-2968 | Msa1463250:intergenic | 25.0% |
| ! | CCATATTCTTGATGAAATAA+AGG | + | tig0043065:2946-2965 | Msa1463250:intron | 25.0% |
| ! | TGATGAAATAAAGGAGAATT+TGG | + | tig0043065:2955-2974 | Msa1463250:intron | 25.0% |
| ! | TAAAATAACAGGAGTTCATT+TGG | - | tig0043065:3010-3029 | Msa1463250:intergenic | 25.0% |
| ! | TTTCATATCGCTAAAATAAC+AGG | - | tig0043065:3021-3040 | Msa1463250:intergenic | 25.0% |
| ! | ATGTATTCAGTCACATTTAT+AGG | + | tig0043065:3112-3131 | Msa1463250:intron | 25.0% |
| ! | GCTAACATATAAATAGATAC+TGG | - | tig0043065:3513-3532 | Msa1463250:intergenic | 25.0% |
| ! | AAATTCATCTATTGGATGTA+AGG | + | tig0043065:3586-3605 | Msa1463250:intron | 25.0% |
| ! | AATTCATCTATTGGATGTAA+GGG | + | tig0043065:3587-3606 | Msa1463250:intron | 25.0% |
| !!! | ATAAACTCATTTTTTTGCAG+AGG | - | tig0043065:3623-3642 | Msa1463250:intergenic | 25.0% |
| ! | TCATTCATTAGGTCAAATAT+GGG | + | tig0043065:3657-3676 | Msa1463250:intron | 25.0% |
| ! | ATAACCTACTATGATTTAGA+AGG | - | tig0043065:3982-4001 | Msa1463250:intergenic | 25.0% |
| !!! | ATTCTTTGTTTTTCAGGATT+AGG | + | tig0043065:4171-4190 | Msa1463250:intron | 25.0% |
| ! | ACACACAAAAAATAAGATGT+GGG | - | tig0043065:4391-4410 | Msa1463250:intergenic | 25.0% |
| ! | TACACACAAAAAATAAGATG+TGG | - | tig0043065:4392-4411 | Msa1463250:intergenic | 25.0% |
| !!! | CTTCCCTTTATTTTCATAAA+TGG | + | tig0043065:4430-4449 | Msa1463250:intron | 25.0% |
| ! | CTCTCCATTTATGAAAATAA+AGG | - | tig0043065:4437-4456 | Msa1463250:intergenic | 25.0% |
| !!! | CTTTATTTTCATAAATGGAG+AGG | + | tig0043065:4435-4454 | Msa1463250:intron | 25.0% |
| ! | CAAAATGAAAGCTAAAAAAC+AGG | - | tig0043065:4597-4616 | Msa1463250:intergenic | 25.0% |
| !! | TACAATAAGGACATTTTAGA+TGG | + | tig0043065:4624-4643 | Msa1463250:intron | 25.0% |
| !! | TAGACTAAAAGATGTGTTTT+AGG | + | tig0043065:4881-4900 | Msa1463250:intron | 25.0% |
| ! | GCATGATAAAGATCATAATT+TGG | + | tig0043065:5078-5097 | Msa1463250:intron | 25.0% |
| ! | AGCATATAATGAACAATTAC+AGG | - | tig0043065:5351-5370 | Msa1463250:intergenic | 25.0% |
| !!! | TCTTGTTATTGAATTGTTGT+CGG | + | tig0043065:5544-5563 | Msa1463250:three_prime_UTR | 25.0% |
| TTTCTCACTGAACCTTAAAT+TGG | + | tig0043065:660-679 | Msa1463250:intron | 30.0% | |
| CCCATATTTGTAATAGCATA+AGG | - | tig0043065:835-854 | Msa1463250:intergenic | 30.0% | |
| !! | TGGGATTGATTTAGGTTTTA+TGG | + | tig0043065:867-886 | Msa1463250:CDS | 30.0% |
| !! | GGGATTGATTTAGGTTTTAT+GGG | + | tig0043065:868-887 | Msa1463250:CDS | 30.0% |
| ! | ACATTGATTAACAATATGGG+GGG | + | tig0043065:1205-1224 | Msa1463250:intron | 30.0% |
| !!! | CTTTTTTGGATCATGTAAGA+TGG | - | tig0043065:1523-1542 | Msa1463250:intergenic | 30.0% |
| TTAAACACTTCAAAGATGCA+AGG | - | tig0043065:1558-1577 | Msa1463250:intergenic | 30.0% | |
| TACTATAACTTCACAGGTAT+TGG | + | tig0043065:1649-1668 | Msa1463250:intron | 30.0% | |
| CCCAAATATTCAGCAATAAT+AGG | - | tig0043065:1707-1726 | Msa1463250:intergenic | 30.0% | |
| ATTATTGCTGAATATTTGGG+AGG | + | tig0043065:1707-1726 | Msa1463250:CDS | 30.0% | |
| TTTAGTACACGATACAATAG+GGG | + | tig0043065:2020-2039 | Msa1463250:intron | 30.0% | |
| ! | ATGTAGTTATGGTTTCAAGT+AGG | + | tig0043065:2094-2113 | Msa1463250:intron | 30.0% |
| TTCATCTCCCTATTTATCAT+AGG | - | tig0043065:2306-2325 | Msa1463250:intergenic | 30.0% | |
| !! | TCGATTTTAGTCATTTCTGT+TGG | + | tig0043065:2414-2433 | Msa1463250:intron | 30.0% |
| !! | CGATTTTAGTCATTTCTGTT+GGG | + | tig0043065:2415-2434 | Msa1463250:intron | 30.0% |
| GTATAATGTATGTATAACCC+AGG | - | tig0043065:2481-2500 | Msa1463250:intergenic | 30.0% | |
| GCAAACGATGAATATATAGA+TGG | + | tig0043065:2572-2591 | Msa1463250:intron | 30.0% | |
| AACGATGAATATATAGATGG+AGG | + | tig0043065:2575-2594 | Msa1463250:intron | 30.0% | |
| ACGATGAATATATAGATGGA+GGG | + | tig0043065:2576-2595 | Msa1463250:intron | 30.0% | |
| ! | TTGAAGGACTTTTGTGATTT+TGG | + | tig0043065:2687-2706 | Msa1463250:intron | 30.0% |
| ! | TGATTTTGGATCAAAATTCC+TGG | + | tig0043065:2701-2720 | Msa1463250:intron | 30.0% |
| ! | GATTTTGGATCAAAATTCCT+GGG | + | tig0043065:2702-2721 | Msa1463250:intron | 30.0% |
| GAACTTGCAACAATTATGAA+CGG | + | tig0043065:2748-2767 | Msa1463250:intron | 30.0% | |
| ! | CCAGTTTTTCTCACTAAATT+CGG | - | tig0043065:2881-2900 | Msa1463250:intergenic | 30.0% |
| ! | TTCTGTTATACCCGTTTTAT+GGG | - | tig0043065:3257-3276 | Msa1463250:intergenic | 30.0% |
| ! | TTTCTGTTATACCCGTTTTA+TGG | - | tig0043065:3258-3277 | Msa1463250:intergenic | 30.0% |
| TACACAGAGAAAAGAGTAAA+TGG | - | tig0043065:3483-3502 | Msa1463250:intergenic | 30.0% | |
| CTCATTCATTAGGTCAAATA+TGG | + | tig0043065:3656-3675 | Msa1463250:intron | 30.0% | |
| CATTCATTAGGTCAAATATG+GGG | + | tig0043065:3658-3677 | Msa1463250:intron | 30.0% | |
| GTAGAAATCAGTCTTAACAT+TGG | + | tig0043065:3730-3749 | Msa1463250:intron | 30.0% | |
| !! | TATGCCATTTGCTTATTTTC+AGG | + | tig0043065:3798-3817 | Msa1463250:intron | 30.0% |
| TTGACCTGAAAATAAGCAAA+TGG | - | tig0043065:3805-3824 | Msa1463250:intergenic | 30.0% | |
| GGAGATTAATGCTATCAAAA+AGG | + | tig0043065:3870-3889 | Msa1463250:CDS | 30.0% | |
| ! | TGCTATCAAAAAGGTTTTCA+AGG | + | tig0043065:3879-3898 | Msa1463250:CDS | 30.0% |
| GTTATAGTTGATCAATTCCA+TGG | + | tig0043065:3997-4016 | Msa1463250:intron | 30.0% | |
| !!! | TTTTTCAGGATTAGGATTGT+TGG | + | tig0043065:4179-4198 | Msa1463250:intron | 30.0% |
| !! | TTTTCAGGATTAGGATTGTT+GGG | + | tig0043065:4180-4199 | Msa1463250:intron | 30.0% |
| ATTTCTCCAAATGGAAGAAA+TGG | - | tig0043065:4301-4320 | Msa1463250:intergenic | 30.0% | |
| ! | TGTGTCTTTATTTCTCCAAA+TGG | - | tig0043065:4310-4329 | Msa1463250:intergenic | 30.0% |
| TGTGTGTATCTCTTTCTAAA+TGG | + | tig0043065:4404-4423 | Msa1463250:intron | 30.0% | |
| GAAAGATAAAATGAGACAGA+AGG | - | tig0043065:4477-4496 | Msa1463250:intergenic | 30.0% | |
| ! | AGTGAAAGATAATTTGAGAC+AGG | - | tig0043065:4508-4527 | Msa1463250:intergenic | 30.0% |
| ! | ATTTTGCTCTTGCTACAATA+AGG | + | tig0043065:4611-4630 | Msa1463250:intron | 30.0% |
| TGACAAATAAAAGGAGACAA+TGG | + | tig0043065:4717-4736 | Msa1463250:intron | 30.0% | |
| GACAAATAAAAGGAGACAAT+GGG | + | tig0043065:4718-4737 | Msa1463250:intron | 30.0% | |
| TCCAGGTGAGTAAAAATAAA+GGG | - | tig0043065:4770-4789 | Msa1463250:intergenic | 30.0% | |
| ATCCAGGTGAGTAAAAATAA+AGG | - | tig0043065:4771-4790 | Msa1463250:intergenic | 30.0% | |
| TCAAATTCATTTGGATTTGG+TGG | + | tig0043065:5169-5188 | Msa1463250:CDS | 30.0% | |
| ! | TTTGGATCCTTTTCTCTTTG+CGG | - | tig0043065:313-332 | Msa1463250:intergenic | 35.0% |
| !! | GGAAGCATCAAATCTATCAA+TGG | - | tig0043065:437-456 | Msa1463250:intergenic | 35.0% |
| ! | GGTTTAACTGTGTTTTCTGA+AGG | + | tig0043065:757-776 | Msa1463250:CDS | 35.0% |
| AATATGGGTTCAGCTTTACT+TGG | + | tig0043065:847-866 | Msa1463250:CDS | 35.0% | |
| ATATGGGTTCAGCTTTACTT+GGG | + | tig0043065:848-867 | Msa1463250:CDS | 35.0% | |
| ! | GCTTTACTTGGGATTGATTT+AGG | + | tig0043065:859-878 | Msa1463250:CDS | 35.0% |
| TGCGATTATTCCAATTGGTT+TGG | + | tig0043065:1005-1024 | Msa1463250:CDS | 35.0% | |
| ! | GCGATTATTCCAATTGGTTT+GGG | + | tig0043065:1006-1025 | Msa1463250:CDS | 35.0% |
| !! | ATTATTCCAATTGGTTTGGG+TGG | + | tig0043065:1009-1028 | Msa1463250:CDS | 35.0% |
| !!! | AGAACGTGATGGTTTTGTTA+TGG | + | tig0043065:1101-1120 | Msa1463250:CDS | 35.0% |
| !!! | GAACGTGATGGTTTTGTTAT+GGG | + | tig0043065:1102-1121 | Msa1463250:CDS | 35.0% |
| !! | CTTCTTCTTGTTGTTGTTGT+TGG | + | tig0043065:1180-1199 | Msa1463250:intron | 35.0% |
| GCTATACTTGCTTCTTAAGA+TGG | + | tig0043065:1389-1408 | Msa1463250:intron | 35.0% | |
| ! | TTTTCCTTTGTACATGATCC+CGG | + | tig0043065:1453-1472 | Msa1463250:intron | 35.0% |
| TTTGGATCATGTAAGATGGT+GGG | - | tig0043065:1519-1538 | Msa1463250:intergenic | 35.0% | |
| ! | TTTTGGATCATGTAAGATGG+TGG | - | tig0043065:1520-1539 | Msa1463250:intergenic | 35.0% |
| !!! | TTGTGTGTGTCCTGTTTTTT+TGG | + | tig0043065:1590-1609 | Msa1463250:intron | 35.0% |
| !!! | TGTGTGTGTCCTGTTTTTTT+GGG | + | tig0043065:1591-1610 | Msa1463250:intron | 35.0% |
| TGTATAGGACCCAAAAAAAC+AGG | - | tig0043065:1603-1622 | Msa1463250:intergenic | 35.0% | |
| ! | CTAGAGTACTATAACTTCAC+AGG | + | tig0043065:1643-1662 | Msa1463250:intron | 35.0% |
| ACTGTTTCATTCTCTTTACC+CGG | + | tig0043065:1841-1860 | Msa1463250:intron | 35.0% | |
| ! | TAGCAACAAAAAGTGTAAGC+CGG | - | tig0043065:1863-1882 | Msa1463250:intergenic | 35.0% |
| AGAAAGGAAAAACATGCTGA+AGG | - | tig0043065:1945-1964 | Msa1463250:intergenic | 35.0% | |
| ! | TTCAGCATGTTTTTCCTTTC+TGG | + | tig0043065:1944-1963 | Msa1463250:intron | 35.0% |
| TTTCTGTTTGCTTGCAATAC+TGG | + | tig0043065:1978-1997 | Msa1463250:intron | 35.0% | |
| ! | TGAAGAGTATACATGTGAAG+CGG | + | tig0043065:2217-2236 | Msa1463250:intron | 35.0% |
| ! | AGCATTGAAGAGAAAAGCTA+AGG | + | tig0043065:2358-2377 | Msa1463250:intron | 35.0% |
| ! | TGGGTTTTCTCTTGTAATTC+AGG | + | tig0043065:2434-2453 | Msa1463250:intron | 35.0% |
| ! | GGGTTTTCTCTTGTAATTCA+GGG | + | tig0043065:2435-2454 | Msa1463250:intron | 35.0% |
| TAAAACTGTTATCAGTGCCT+GGG | + | tig0043065:2461-2480 | Msa1463250:intron | 35.0% | |
| !! | TAACACCAGTTGGTAAAAAC+TGG | - | tig0043065:2531-2550 | Msa1463250:intergenic | 35.0% |
| AATATATAGATGGAGGGAAG+TGG | + | tig0043065:2582-2601 | Msa1463250:intron | 35.0% | |
| ATATATAGATGGAGGGAAGT+GGG | + | tig0043065:2583-2602 | Msa1463250:intron | 35.0% | |
| ATATTATGATCCCCTCTTGA+AGG | + | tig0043065:2671-2690 | Msa1463250:intron | 35.0% | |
| ATCACAAAAGTCCTTCAAGA+GGG | - | tig0043065:2685-2704 | Msa1463250:intergenic | 35.0% | |
| AATCACAAAAGTCCTTCAAG+AGG | - | tig0043065:2686-2705 | Msa1463250:intergenic | 35.0% | |
| GATCAAAATTCCTGGGATAA+GGG | + | tig0043065:2709-2728 | Msa1463250:intron | 35.0% | |
| ACAATTATGAACGGCAAAGA+CGG | + | tig0043065:2757-2776 | Msa1463250:intron | 35.0% | |
| GGAATGAGTTTACACTTTAC+AGG | - | tig0043065:2826-2845 | Msa1463250:intergenic | 35.0% | |
| ! | GTTTTTCTCACTAAATTCGG+TGG | - | tig0043065:2878-2897 | Msa1463250:intergenic | 35.0% |
| CCGAATTTAGTGAGAAAAAC+TGG | + | tig0043065:2878-2897 | Msa1463250:intron | 35.0% | |
| AAAAACTGGACACATTTCCA+TGG | + | tig0043065:2892-2911 | Msa1463250:intron | 35.0% | |
| ATTTCTTGATTTACTCCCTC+CGG | + | tig0043065:3042-3061 | Msa1463250:intron | 35.0% | |
| TGTTTATAAATGTGACCGGA+GGG | - | tig0043065:3177-3196 | Msa1463250:intergenic | 35.0% | |
| TTGTTTATAAATGTGACCGG+AGG | - | tig0043065:3176-3195 | Msa1463250:intergenic | 35.0% | |
| TTGTTTATAAATGTGACCGG+AGG | + | tig0043065:3176-3195 | Msa1463250:intron | 35.0% | |
| TGTTTATAAATGTGACCGGA+GGG | + | tig0043065:3177-3196 | Msa1463250:intron | 35.0% | |
| TTAGGTAACCACCCATAAAA+CGG | + | tig0043065:3243-3262 | Msa1463250:intron | 35.0% | |
| !!! | TTGTGCTTTATTTTCACAGC+TGG | - | tig0043065:3303-3322 | Msa1463250:intergenic | 35.0% |
| AAGGGACAGAATTCTTATGA+TGG | + | tig0043065:3352-3371 | Msa1463250:intron | 35.0% | |
| ! | CAGAATTCTTATGATGGAGT+TGG | + | tig0043065:3358-3377 | Msa1463250:intron | 35.0% |
| TGATGGAGTTGGATGATAAA+TGG | + | tig0043065:3369-3388 | Msa1463250:intron | 35.0% | |
| GATGGAGTTGGATGATAAAT+GGG | + | tig0043065:3370-3389 | Msa1463250:intron | 35.0% | |
| AGATGCTCTGTGAATGAATT+GGG | + | tig0043065:3421-3440 | Msa1463250:intron | 35.0% | |
| TACAACTAGCACAAGGAATT+TGG | - | tig0043065:3458-3477 | Msa1463250:intergenic | 35.0% | |
| AATGGAATACAACTAGCACA+AGG | - | tig0043065:3465-3484 | Msa1463250:intergenic | 35.0% | |
| ! | ACTCTTTTCTCTGTGTACTT+TGG | + | tig0043065:3486-3505 | Msa1463250:intron | 35.0% |
| !!! | AACTCATTTTTTTGCAGAGG+AGG | - | tig0043065:3620-3639 | Msa1463250:intergenic | 35.0% |
| CATCAAAATAAATGCCACCA+AGG | + | tig0043065:3912-3931 | Msa1463250:CDS | 35.0% | |
| CAAATGACATGCTAATACCT+TGG | - | tig0043065:3932-3951 | Msa1463250:intergenic | 35.0% | |
| ! | TGTCATTTGCTCTTATTTGC+TGG | + | tig0043065:3943-3962 | Msa1463250:intron | 35.0% |
| TCTGCCTTCTAAATCATAGT+AGG | + | tig0043065:3975-3994 | Msa1463250:intron | 35.0% | |
| AGAACGTATGCATCAGTTAA+TGG | - | tig0043065:4023-4042 | Msa1463250:intergenic | 35.0% | |
| CTGTGATATCAGTCTATGAT+AGG | + | tig0043065:4044-4063 | Msa1463250:intron | 35.0% | |
| CGTACGAATTGATTGATTGA+GGG | - | tig0043065:4143-4162 | Msa1463250:intergenic | 35.0% | |
| ACGTACGAATTGATTGATTG+AGG | - | tig0043065:4144-4163 | Msa1463250:intergenic | 35.0% | |
| GAAATGGAGAAGGACATAAA+TGG | - | tig0043065:4285-4304 | Msa1463250:intergenic | 35.0% | |
| !! | GGTTGAGGTACTGATAAATA+AGG | - | tig0043065:4576-4595 | Msa1463250:intergenic | 35.0% |
| GAAAGCTAAAAAACAGGTTG+AGG | - | tig0043065:4591-4610 | Msa1463250:intergenic | 35.0% | |
| !!! | TCCCTTTATTTTTACTCACC+TGG | + | tig0043065:4766-4785 | Msa1463250:intron | 35.0% |
| AAGCACAACAAAAAGAATCC+AGG | - | tig0043065:4787-4806 | Msa1463250:intergenic | 35.0% | |
| !!! | GTCTTGTTGTTTTCATTGCT+CGG | + | tig0043065:4842-4861 | Msa1463250:intron | 35.0% |
| ! | TGTTTTCATTGCTCGGTAAT+TGG | + | tig0043065:4849-4868 | Msa1463250:intron | 35.0% |
| ! | GTTTTCATTGCTCGGTAATT+GGG | + | tig0043065:4850-4869 | Msa1463250:intron | 35.0% |
| CATAATCATTCTGTTTGCCT+TGG | + | tig0043065:4932-4951 | Msa1463250:intron | 35.0% | |
| ACTGTATCAAAATCAACTGC+AGG | - | tig0043065:4979-4998 | Msa1463250:intergenic | 35.0% | |
| CAGCAGCATGAAATTAATGT+TGG | + | tig0043065:5012-5031 | Msa1463250:CDS | 35.0% | |
| TGCGAAAATGAAAAATGCAC+TGG | - | tig0043065:5061-5080 | Msa1463250:intergenic | 35.0% | |
| AATTTGGACTGCTAACTAAC+TGG | + | tig0043065:5094-5113 | Msa1463250:intron | 35.0% | |
| TGAAATGCCTGGAAAAAGAA+AGG | - | tig0043065:5152-5171 | Msa1463250:intergenic | 35.0% | |
| ! | CCAAATGAATTTGAAATGCC+TGG | - | tig0043065:5163-5182 | Msa1463250:intergenic | 35.0% |
| CCAGGCATTTCAAATTCATT+TGG | + | tig0043065:5160-5179 | Msa1463250:intron | 35.0% | |
| AGTTCTACAGCAAAAGTCTT+TGG | - | tig0043065:5396-5415 | Msa1463250:intergenic | 35.0% | |
| ATGTAGCACGAAGATTTCAT+TGG | + | tig0043065:5423-5442 | Msa1463250:three_prime_UTR | 35.0% | |
| !! | ATTGGTTTGGAGTTATACAG+CGG | + | tig0043065:5441-5460 | Msa1463250:three_prime_UTR | 35.0% |
| AGTGAGTGAATGAGTGTGTA+AGG | - | tig0043065:82-101 | None:intergenic | 40.0% | |
| AAATGACTGACACTCACTGA+CGG | - | tig0043065:122-141 | None:intergenic | 40.0% | |
| ! | ACAAGTGAGTCTCTTGGTTT+TGG | - | tig0043065:260-279 | None:intergenic | 40.0% |
| GTAATCACAACACGCTTCTT+TGG | - | tig0043065:331-350 | Msa1463250:intergenic | 40.0% | |
| ! | AAGAAGCGTGTTGTGATTAC+TGG | + | tig0043065:331-350 | Msa1463250:CDS | 40.0% |
| CGTGTTGTGATTACTGGTAT+GGG | + | tig0043065:337-356 | Msa1463250:CDS | 40.0% | |
| TACTATGATAAGCTTCTCGC+TGG | + | tig0043065:394-413 | Msa1463250:CDS | 40.0% | |
| !!! | GTTTTGGTTGGATCAGGAAT+GGG | + | tig0043065:733-752 | Msa1463250:CDS | 40.0% |
| ATGACCCTAAAACTGCTTCT+AGG | + | tig0043065:1067-1086 | Msa1463250:CDS | 40.0% | |
| ! | AAGGCCTAGAAGCAGTTTTA+GGG | - | tig0043065:1074-1093 | Msa1463250:intergenic | 40.0% |
| TAAAACTGCTTCTAGGCCTT+GGG | + | tig0043065:1074-1093 | Msa1463250:CDS | 40.0% | |
| !!! | GATGGTTTTGTTATGGGAGA+AGG | + | tig0043065:1108-1127 | Msa1463250:CDS | 40.0% |
| ! | TTTGTTATGGGAGAAGGTTC+TGG | + | tig0043065:1114-1133 | Msa1463250:CDS | 40.0% |
| !!! | AAGGTTCTGGAGTTTTGGTT+AGG | + | tig0043065:1127-1146 | Msa1463250:intron | 40.0% |
| TGATTAACAATATGGGGGGT+TGG | + | tig0043065:1209-1228 | Msa1463250:intron | 40.0% | |
| TTAACAATATGGGCAGCTCA+AGG | + | tig0043065:1232-1251 | Msa1463250:intron | 40.0% | |
| TAACAATATGGGCAGCTCAA+GGG | + | tig0043065:1233-1252 | Msa1463250:intron | 40.0% | |
| AAAACAGGACACACACAACA+TGG | - | tig0043065:1588-1607 | Msa1463250:intergenic | 40.0% | |
| ATGACTGATCCAAGATCTGA+CGG | + | tig0043065:1755-1774 | Msa1463250:CDS | 40.0% | |
| ! | AGCAACAAAAAGTGTAAGCC+GGG | - | tig0043065:1862-1881 | Msa1463250:intergenic | 40.0% |
| AAGGAAAAACATGCTGAAGG+AGG | - | tig0043065:1942-1961 | Msa1463250:intergenic | 40.0% | |
| AGCAAACAGAAACGTAGAGT+CGG | - | tig0043065:1970-1989 | Msa1463250:intergenic | 40.0% | |
| !!! | TGCTATTTTTCATGCATGCC+AGG | - | tig0043065:2050-2069 | Msa1463250:intergenic | 40.0% |
| TAGCTGCTGCTATGTAGTTA+TGG | + | tig0043065:2083-2102 | Msa1463250:intron | 40.0% | |
| ! | TAAGGCCTCTAAAAAAGCCT+TGG | + | tig0043065:2376-2395 | Msa1463250:intron | 40.0% |
| ! | AAGGCCTCTAAAAAAGCCTT+GGG | + | tig0043065:2377-2396 | Msa1463250:intron | 40.0% |
| GAATGAAATTAGTCAGCCCA+AGG | - | tig0043065:2396-2415 | Msa1463250:intergenic | 40.0% | |
| CTAAAACTGTTATCAGTGCC+TGG | + | tig0043065:2460-2479 | Msa1463250:intron | 40.0% | |
| ! | TTGGTCCAGTTTTTACCAAC+TGG | + | tig0043065:2523-2542 | Msa1463250:intron | 40.0% |
| !! | GTTTTGATGCCTTATACGAG+AGG | - | tig0043065:2618-2637 | Msa1463250:intergenic | 40.0% |
| GGGGATCATAATATCTCATC+TGG | - | tig0043065:2665-2684 | Msa1463250:intergenic | 40.0% | |
| TCACAAAAGTCCTTCAAGAG+GGG | - | tig0043065:2684-2703 | Msa1463250:intergenic | 40.0% | |
| GGATCAAAATTCCTGGGATA+AGG | + | tig0043065:2708-2727 | Msa1463250:intron | 40.0% | |
| ! | ATTCCTGTTTCAGCCTTGTA+TGG | + | tig0043065:2841-2860 | Msa1463250:intron | 40.0% |
| GGTTTCATCTCTACCATACA+AGG | - | tig0043065:2857-2876 | Msa1463250:intergenic | 40.0% | |
| !! | GGAAGGCATTGCTAATATTG+TGG | + | tig0043065:2916-2935 | Msa1463250:intron | 40.0% |
| CTGTGCGTGTTTGTATTCTT+AGG | + | tig0043065:3225-3244 | Msa1463250:intron | 40.0% | |
| TAGGTAACCACCCATAAAAC+GGG | + | tig0043065:3244-3263 | Msa1463250:intron | 40.0% | |
| ! | TGTTATACCCGTTTTATGGG+TGG | - | tig0043065:3254-3273 | Msa1463250:intergenic | 40.0% |
| GAGATGCTCTGTGAATGAAT+TGG | + | tig0043065:3420-3439 | Msa1463250:intron | 40.0% | |
| ACTAGCACAAGGAATTTGGT+AGG | - | tig0043065:3454-3473 | Msa1463250:intergenic | 40.0% | |
| TAATGAATGAGCGAGTAGCT+GGG | - | tig0043065:3647-3666 | Msa1463250:intergenic | 40.0% | |
| !! | AAGGTTTTCAAGGACACTTC+TGG | + | tig0043065:3889-3908 | Msa1463250:CDS | 40.0% |
| ATGACATGCTAATACCTTGG+TGG | - | tig0043065:3929-3948 | Msa1463250:intergenic | 40.0% | |
| TATGCATCAGTTAATGGCCA+TGG | - | tig0043065:4017-4036 | Msa1463250:intergenic | 40.0% | |
| TCTATGATAGGTCACTGTCT+TGG | + | tig0043065:4056-4075 | Msa1463250:CDS | 40.0% | |
| TGTTGTTATGGCTTTCACTG+TGG | - | tig0043065:4108-4127 | Msa1463250:intergenic | 40.0% | |
| ACAGTGAAAGCCATAACAAC+AGG | + | tig0043065:4107-4126 | Msa1463250:CDS | 40.0% | |
| TGAAAGCCATAACAACAGGA+TGG | + | tig0043065:4111-4130 | Msa1463250:CDS | 40.0% | |
| GTTAGAACCAAATGAGTGCT+CGG | + | tig0043065:4208-4227 | Msa1463250:intron | 40.0% | |
| TTAGAACCAAATGAGTGCTC+GGG | + | tig0043065:4209-4228 | Msa1463250:intron | 40.0% | |
| AGTGCTCGGGCATTTATTAT+TGG | + | tig0043065:4222-4241 | Msa1463250:intron | 40.0% | |
| CCAAATGGAAGAAATGGAGA+AGG | - | tig0043065:4295-4314 | Msa1463250:intergenic | 40.0% | |
| CCTTCTCCATTTCTTCCATT+TGG | + | tig0043065:4292-4311 | Msa1463250:intron | 40.0% | |
| AAATGGAGAGGATCCTTACT+CGG | + | tig0043065:4447-4466 | Msa1463250:intron | 40.0% | |
| TCAAAATCAACTGCAGGTTC+TGG | - | tig0043065:4973-4992 | Msa1463250:intergenic | 40.0% | |
| !!! | TAACTGGCCTTTCTTTTTCC+AGG | + | tig0043065:5142-5161 | Msa1463250:intron | 40.0% |
| TTGTTCTCTCTACGTCATTG+AGG | + | tig0043065:5287-5306 | Msa1463250:three_prime_UTR | 40.0% | |
| !! | CAAAAGTCTTTGGAGCTAAC+TGG | - | tig0043065:5386-5405 | Msa1463250:intergenic | 40.0% |
| ! | GCACGAAGATTTCATTGGTT+TGG | + | tig0043065:5428-5447 | Msa1463250:three_prime_UTR | 40.0% |
| ! | AGTGTCGAGAGAGCTTATTT+AGG | + | tig0043065:5470-5489 | Msa1463250:three_prime_UTR | 40.0% |
| ! | TGACGGCATTGGAGGATTTA+CGG | - | tig0043065:228-247 | None:intergenic | 45.0% |
| !!! | AGTGAGTCTCTTGGTTTTGG+CGG | - | tig0043065:257-276 | None:intergenic | 45.0% |
| GGAGATACAAGTGAGTCTCT+TGG | - | tig0043065:266-285 | None:intergenic | 45.0% | |
| GCGTGTTGTGATTACTGGTA+TGG | + | tig0043065:336-355 | Msa1463250:CDS | 45.0% | |
| TACTGGTATGGGTCTTGCTT+CGG | + | tig0043065:348-367 | Msa1463250:CDS | 45.0% | |
| !! | AGCGAATCGAGTTGGGAATT+TGG | - | tig0043065:458-477 | Msa1463250:intergenic | 45.0% |
| ! | AAATTCCCAACTCGATTCGC+TGG | + | tig0043065:457-476 | Msa1463250:CDS | 45.0% |
| ! | ATCCGTGACTTCAGTTCTGA+GGG | + | tig0043065:484-503 | Msa1463250:CDS | 45.0% |
| AACCCTCAGAACTGAAGTCA+CGG | - | tig0043065:489-508 | Msa1463250:intergenic | 45.0% | |
| !! | AGTTCTGAGGGTTACATCGA+CGG | + | tig0043065:496-515 | Msa1463250:CDS | 45.0% |
| GGAGACAATCATCAAGTCTC+CGG | - | tig0043065:531-550 | Msa1463250:intergenic | 45.0% | |
| ! | GGAGACTTGATGATTGTCTC+CGG | + | tig0043065:530-549 | Msa1463250:CDS | 45.0% |
| GTGTTCGAGTGCTTTCTTAC+CGG | - | tig0043065:569-588 | Msa1463250:intergenic | 45.0% | |
| !! | CGGTGCTGCAAATCTATCTA+AGG | + | tig0043065:597-616 | Msa1463250:CDS | 45.0% |
| CAGATTGATAAGGAACGTGC+TGG | + | tig0043065:709-728 | Msa1463250:intron | 45.0% | |
| !!! | CGTTTTGGTTGGATCAGGAA+TGG | + | tig0043065:732-751 | Msa1463250:CDS | 45.0% |
| CTCACCTCTACGAATGTGAT+TGG | - | tig0043065:953-972 | Msa1463250:intergenic | 45.0% | |
| CAATCACATTCGTAGAGGTG+AGG | + | tig0043065:951-970 | Msa1463250:CDS | 45.0% | |
| !! | GAGGCTGATTTGATGATAGC+CGG | + | tig0043065:970-989 | Msa1463250:CDS | 45.0% |
| ! | CTGATTTGATGATAGCCGGT+GGG | + | tig0043065:974-993 | Msa1463250:CDS | 45.0% |
| GAGGCTGCGATTATTCCAAT+TGG | + | tig0043065:1000-1019 | Msa1463250:CDS | 45.0% | |
| ACGAAACCACCCAAACCAAT+TGG | - | tig0043065:1018-1037 | Msa1463250:intergenic | 45.0% | |
| ! | CAAGGCCTAGAAGCAGTTTT+AGG | - | tig0043065:1075-1094 | Msa1463250:intergenic | 45.0% |
| CTAAAACTGCTTCTAGGCCT+TGG | + | tig0043065:1073-1092 | Msa1463250:CDS | 45.0% | |
| CCATCACGTTCTTTATCCCA+AGG | - | tig0043065:1093-1112 | Msa1463250:intergenic | 45.0% | |
| CCTTGGGATAAAGAACGTGA+TGG | + | tig0043065:1090-1109 | Msa1463250:CDS | 45.0% | |
| !! | TGGGGGGTTGGTTAACAATA+TGG | + | tig0043065:1221-1240 | Msa1463250:intron | 45.0% |
| !! | GGGGGGTTGGTTAACAATAT+GGG | + | tig0043065:1222-1241 | Msa1463250:intron | 45.0% |
| !! | TTCACAGGTATTGGAAAGCC+TGG | + | tig0043065:1658-1677 | Msa1463250:intron | 45.0% |
| GAATGAAACAGTACCTCCTC+AGG | - | tig0043065:1833-1852 | Msa1463250:intergenic | 45.0% | |
| CTACATAGCAGCAGCTATAC+AGG | - | tig0043065:2080-2099 | Msa1463250:intergenic | 45.0% | |
| TGTGGTATGAGAGGGACTAT+GGG | + | tig0043065:2261-2280 | Msa1463250:intron | 45.0% | |
| !!! | TCAGCCCAAGGCTTTTTTAG+AGG | - | tig0043065:2384-2403 | Msa1463250:intergenic | 45.0% |
| GTGTTAGAGCTCCCAATTGT+GGG | + | tig0043065:2545-2564 | Msa1463250:intron | 45.0% | |
| ! | ATAGCTCTGCCTCTCGTATA+AGG | + | tig0043065:2606-2625 | Msa1463250:intron | 45.0% |
| TTCCTGGGATAAGGGTTGAA+AGG | + | tig0043065:2717-2736 | Msa1463250:intron | 45.0% | |
| GGATAAGGGTTGAAAGGTGA+AGG | + | tig0043065:2723-2742 | Msa1463250:intron | 45.0% | |
| ! | CTCAGCTGAGTTGAGTTCTA+GGG | + | tig0043065:2780-2799 | Msa1463250:intron | 45.0% |
| CTACCATACAAGGCTGAAAC+AGG | - | tig0043065:2847-2866 | Msa1463250:intergenic | 45.0% | |
| AACTGGACACATTTCCATGG+TGG | + | tig0043065:2895-2914 | Msa1463250:intron | 45.0% | |
| ATTAGCAATGCCTTCCACCA+TGG | - | tig0043065:2912-2931 | Msa1463250:intergenic | 45.0% | |
| ACAGTTTCACCTTGTCCTTG+AGG | - | tig0043065:3209-3228 | Msa1463250:intergenic | 45.0% | |
| GGAGTTGGATGATAAATGGG+AGG | + | tig0043065:3373-3392 | Msa1463250:intron | 45.0% | |
| TGGATGATAAATGGGAGGAG+AGG | + | tig0043065:3378-3397 | Msa1463250:intron | 45.0% | |
| TCTGTGAATGAATTGGGACC+CGG | + | tig0043065:3427-3446 | Msa1463250:intron | 45.0% | |
| CTAATGAATGAGCGAGTAGC+TGG | - | tig0043065:3648-3667 | Msa1463250:intergenic | 45.0% | |
| CAGCTACTCGCTCATTCATT+AGG | + | tig0043065:3646-3665 | Msa1463250:intron | 45.0% | |
| TTCCACTCTTGCTGGTGATT+TGG | + | tig0043065:3846-3865 | Msa1463250:CDS | 45.0% | |
| ATGCAGCCATCCTGTTGTTA+TGG | - | tig0043065:4120-4139 | Msa1463250:intergenic | 45.0% | |
| TAAATGCCCGAGCACTCATT+TGG | - | tig0043065:4218-4237 | Msa1463250:intergenic | 45.0% | |
| AATGGAGAGGATCTTGACTC+AGG | - | tig0043065:4267-4286 | Msa1463250:intergenic | 45.0% | |
| GGAGAAGGACATAAATGGAG+AGG | - | tig0043065:4280-4299 | Msa1463250:intergenic | 45.0% | |
| TCATTGCTCGGTAATTGGGA+TGG | + | tig0043065:4854-4873 | Msa1463250:intron | 45.0% | |
| GGATTCTACACTCAAGACCA+AGG | - | tig0043065:4952-4971 | Msa1463250:intergenic | 45.0% | |
| ! | ACTGACGGAGAGTACGAAGA+AGG | - | tig0043065:107-126 | None:intergenic | 50.0% |
| TTGGAGGATTTACGGCGAAG+TGG | - | tig0043065:220-239 | None:intergenic | 50.0% | |
| ! | ATCCTTTTCTCTTTGCGGCG+CGG | - | tig0043065:308-327 | Msa1463250:intergenic | 50.0% |
| !! | ATGGGTCTTGCTTCGGTGTT+TGG | + | tig0043065:355-374 | Msa1463250:CDS | 50.0% |
| TCTGACCAGCGAATCGAGTT+GGG | - | tig0043065:465-484 | Msa1463250:intergenic | 50.0% | |
| ATCTGACCAGCGAATCGAGT+TGG | - | tig0043065:466-485 | Msa1463250:intergenic | 50.0% | |
| GATCCGTGACTTCAGTTCTG+AGG | + | tig0043065:483-502 | Msa1463250:CDS | 50.0% | |
| !! | GTTCTGAGGGTTACATCGAC+GGG | + | tig0043065:497-516 | Msa1463250:CDS | 50.0% |
| ACATCGACGGGAAGAATGAC+CGG | + | tig0043065:509-528 | Msa1463250:CDS | 50.0% | |
| GCACTCGAACACGCTAATCT+CGG | + | tig0043065:577-596 | Msa1463250:CDS | 50.0% | |
| !! | TAAGGAACGTGCTGGCGTTT+TGG | + | tig0043065:717-736 | Msa1463250:CDS | 50.0% |
| TTGGTTGGATCAGGAATGGG+TGG | + | tig0043065:736-755 | Msa1463250:CDS | 50.0% | |
| GCTGCCAATCACATTCGTAG+AGG | + | tig0043065:946-965 | Msa1463250:CDS | 50.0% | |
| !! | GCTGATTTGATGATAGCCGG+TGG | + | tig0043065:973-992 | Msa1463250:CDS | 50.0% |
| !!! | GGGAGAAGGTTCTGGAGTTT+TGG | + | tig0043065:1122-1141 | Msa1463250:CDS | 50.0% |
| TATGGGCAGCTCAAGGGTTA+AGG | + | tig0043065:1239-1258 | Msa1463250:intron | 50.0% | |
| CAGCTCAAGGGTTAAGGTGT+TGG | + | tig0043065:1245-1264 | Msa1463250:intron | 50.0% | |
| !! | CTCAAGGGTTAAGGTGTTGG+AGG | + | tig0043065:1248-1267 | Msa1463250:intron | 50.0% |
| TGCACCGGGATCATGTACAA+AGG | - | tig0043065:1460-1479 | Msa1463250:intergenic | 50.0% | |
| ACTAGATCTCCCGCATATGC+AGG | + | tig0043065:1479-1498 | Msa1463250:intron | 50.0% | |
| CTAGATCTCCCGCATATGCA+GGG | + | tig0043065:1480-1499 | Msa1463250:intron | 50.0% | |
| TTCCTAGACCCTGCATATGC+GGG | - | tig0043065:1491-1510 | Msa1463250:intergenic | 50.0% | |
| CTTCCTAGACCCTGCATATG+CGG | - | tig0043065:1492-1511 | Msa1463250:intergenic | 50.0% | |
| GCATATGCAGGGTCTAGGAA+GGG | + | tig0043065:1491-1510 | Msa1463250:intron | 50.0% | |
| CATATGCAGGGTCTAGGAAG+GGG | + | tig0043065:1492-1511 | Msa1463250:intron | 50.0% | |
| AATAGGTGCACCTCGCTTCA+TGG | - | tig0043065:1690-1709 | Msa1463250:intergenic | 50.0% | |
| !! | GATCCAAGATCTGACGGACT+CGG | + | tig0043065:1761-1780 | Msa1463250:CDS | 50.0% |
| AAACGTAGAGTCGGCCAGAA+AGG | - | tig0043065:1961-1980 | Msa1463250:intergenic | 50.0% | |
| CGATACAATAGGGGATGACC+TGG | + | tig0043065:2029-2048 | Msa1463250:intron | 50.0% | |
| TGTTGGGGTGTGGTATGAGA+GGG | + | tig0043065:2253-2272 | Msa1463250:intron | 50.0% | |
| GTGTGGTATGAGAGGGACTA+TGG | + | tig0043065:2260-2279 | Msa1463250:intron | 50.0% | |
| TATGAGAGGGACTATGGGTC+TGG | + | tig0043065:2266-2285 | Msa1463250:intron | 50.0% | |
| ! | TTGGGAGCTCTAACACCAGT+TGG | - | tig0043065:2541-2560 | Msa1463250:intergenic | 50.0% |
| GGTGTTAGAGCTCCCAATTG+TGG | + | tig0043065:2544-2563 | Msa1463250:intron | 50.0% | |
| CGTTTGCAGCTCCCACAATT+GGG | - | tig0043065:2559-2578 | Msa1463250:intergenic | 50.0% | |
| TCGTTTGCAGCTCCCACAAT+TGG | - | tig0043065:2560-2579 | Msa1463250:intergenic | 50.0% | |
| CACCTTTCAACCCTTATCCC+AGG | - | tig0043065:2722-2741 | Msa1463250:intergenic | 50.0% | |
| ! | GCTCAGCTGAGTTGAGTTCT+AGG | + | tig0043065:2779-2798 | Msa1463250:intron | 50.0% |
| ! | GGACACATTTCCATGGTGGA+AGG | + | tig0043065:2899-2918 | Msa1463250:intron | 50.0% |
| TCCTTGAGGTATACTCCCTC+CGG | - | tig0043065:3195-3214 | Msa1463250:intergenic | 50.0% | |
| ! | GGGAGTATACCTCAAGGACA+AGG | + | tig0043065:3197-3216 | Msa1463250:intron | 50.0% |
| ACAATTGCTTGCACGCAGCA+GGG | + | tig0043065:3319-3338 | Msa1463250:intron | 50.0% | |
| GGGAGGAGAGGAAAGAGAAA+AGG | + | tig0043065:3390-3409 | Msa1463250:intron | 50.0% | |
| CTGTGAATGAATTGGGACCC+GGG | + | tig0043065:3428-3447 | Msa1463250:intron | 50.0% | |
| ACAAGGAATTTGGTAGGCCC+GGG | - | tig0043065:3448-3467 | Msa1463250:intergenic | 50.0% | |
| CACAAGGAATTTGGTAGGCC+CGG | - | tig0043065:3449-3468 | Msa1463250:intergenic | 50.0% | |
| CATGCAACTTCCACTCTTGC+TGG | + | tig0043065:3838-3857 | Msa1463250:CDS | 50.0% | |
| ! | CACTCTTGCTGGTGATTTGG+CGG | + | tig0043065:3849-3868 | Msa1463250:CDS | 50.0% |
| TGTGGGTCCTACCACTAAGT+GGG | - | tig0043065:4374-4393 | Msa1463250:intergenic | 50.0% | |
| ATGTGGGTCCTACCACTAAG+TGG | - | tig0043065:4375-4394 | Msa1463250:intergenic | 50.0% | |
| !! | GACAGAAGGAGTACCGAGTA+AGG | - | tig0043065:4463-4482 | Msa1463250:intergenic | 50.0% |
| !! | TCGTGGCTTTTTCCGCTTTC+AGG | + | tig0043065:5203-5222 | Msa1463250:CDS | 50.0% |
| GAAGACAAGCCTGGCAATCA+GGG | - | tig0043065:5229-5248 | Msa1463250:intergenic | 50.0% | |
| AGAAGACAAGCCTGGCAATC+AGG | - | tig0043065:5230-5249 | Msa1463250:intergenic | 50.0% | |
| CCATGAAGAGAAGACAAGCC+TGG | - | tig0043065:5238-5257 | Msa1463250:intergenic | 50.0% | |
| CCAGGCTTGTCTTCTCTTCA+TGG | + | tig0043065:5235-5254 | Msa1463250:three_prime_UTR | 50.0% | |
| TTACGGCGAAGTGGTTCGAG+CGG | - | tig0043065:211-230 | None:intergenic | 55.0% | |
| !!! | GAGTCTCTTGGTTTTGGCGG+CGG | - | tig0043065:254-273 | None:intergenic | 55.0% |
| ACTCACTTGTATCTCCGCCG+CGG | + | tig0043065:270-289 | Msa1463250:CDS | 55.0% | |
| AAGCTTCTCGCTGGTGAGAG+TGG | + | tig0043065:403-422 | Msa1463250:CDS | 55.0% | |
| TACCGGCGACAATGCAGTAC+CGG | - | tig0043065:552-571 | Msa1463250:intergenic | 55.0% | |
| !! | GAACGTGCTGGCGTTTTGGT+TGG | + | tig0043065:721-740 | Msa1463250:CDS | 55.0% |
| !!! | GCTGGCGTTTTGGTTGGATC+AGG | + | tig0043065:727-746 | Msa1463250:CDS | 55.0% |
| TGGGTGGTTTCGTTGCTTGC+AGG | + | tig0043065:1025-1044 | Msa1463250:CDS | 55.0% | |
| GGGTGGTTTCGTTGCTTGCA+GGG | + | tig0043065:1026-1045 | Msa1463250:CDS | 55.0% | |
| ATGCGGGAGATCTAGTGCAC+CGG | - | tig0043065:1475-1494 | Msa1463250:intergenic | 55.0% | |
| CGCATATGCAGGGTCTAGGA+AGG | + | tig0043065:1490-1509 | Msa1463250:intron | 55.0% | |
| CTCGCTTCATGGCATGTTCC+AGG | - | tig0043065:1679-1698 | Msa1463250:intergenic | 55.0% | |
| CTGGAACATGCCATGAAGCG+AGG | + | tig0043065:1677-1696 | Msa1463250:CDS | 55.0% | |
| CAGAGCAGCCTTGAAGATGC+CGG | + | tig0043065:1800-1819 | Msa1463250:CDS | 55.0% | |
| GAGACACACCGGCATCTTCA+AGG | - | tig0043065:1811-1830 | Msa1463250:intergenic | 55.0% | |
| TACCTCCTCAGGAGACACAC+CGG | - | tig0043065:1822-1841 | Msa1463250:intergenic | 55.0% | |
| TGTGAAGCGGTCTGCACACA+TGG | + | tig0043065:2230-2249 | Msa1463250:intron | 55.0% | |
| CGGTCTGCACACATGGTGTT+GGG | + | tig0043065:2237-2256 | Msa1463250:intron | 55.0% | |
| ! | GGTCTGCACACATGGTGTTG+GGG | + | tig0043065:2238-2257 | Msa1463250:intron | 55.0% |
| GTGTTGGGGTGTGGTATGAG+AGG | + | tig0043065:2252-2271 | Msa1463250:intron | 55.0% | |
| ! | ACCGGAGGGAGTATACCTCA+AGG | + | tig0043065:3191-3210 | Msa1463250:intron | 55.0% |
| CACAATTGCTTGCACGCAGC+AGG | + | tig0043065:3318-3337 | Msa1463250:intron | 55.0% | |
| CAATTGCTTGCACGCAGCAG+GGG | + | tig0043065:3320-3339 | Msa1463250:intron | 55.0% | |
| AATTGCTTGCACGCAGCAGG+GGG | + | tig0043065:3321-3340 | Msa1463250:intron | 55.0% | |
| CGCCAAATCACCAGCAAGAG+TGG | - | tig0043065:3851-3870 | Msa1463250:intergenic | 55.0% | |
| ! | GTCACTGTCTTGGTGCAGCT+GGG | + | tig0043065:4066-4085 | Msa1463250:CDS | 55.0% |
| ! | TCACTGTCTTGGTGCAGCTG+GGG | + | tig0043065:4067-4086 | Msa1463250:CDS | 55.0% |
| ! | TGGTGGACACAACTCTGTCG+TGG | + | tig0043065:5186-5205 | Msa1463250:CDS | 55.0% |
| TGGCAATCAGGGCCTGAAAG+CGG | - | tig0043065:5218-5237 | Msa1463250:intergenic | 55.0% | |
| GGTGAAGGACGGAGAGTGGA+GGG | - | tig0043065:190-209 | None:intergenic | 60.0% | |
| GTGGTTCGAGCGGTGAAGGA+CGG | - | tig0043065:201-220 | None:intergenic | 60.0% | |
| CGAAGTGGTTCGAGCGGTGA+AGG | - | tig0043065:205-224 | None:intergenic | 60.0% | |
| !!! | TCTCTTGGTTTTGGCGGCGG+AGG | - | tig0043065:251-270 | None:intergenic | 60.0% |
| ! | CTTTTCTCTTTGCGGCGCGG+TGG | - | tig0043065:305-324 | Msa1463250:intergenic | 60.0% |
| CACCGCGCCGCAAAGAGAAA+AGG | + | tig0043065:303-322 | Msa1463250:CDS | 60.0% | |
| CTCCGGTACTGCATTGTCGC+CGG | + | tig0043065:547-566 | Msa1463250:CDS | 60.0% | |
| GATGATAGCCGGTGGGACTG+AGG | + | tig0043065:981-1000 | Msa1463250:CDS | 60.0% | |
| AATCGCAGCCTCAGTCCCAC+CGG | - | tig0043065:992-1011 | Msa1463250:intergenic | 60.0% | |
| TGCGGGAGATCTAGTGCACC+GGG | - | tig0043065:1474-1493 | Msa1463250:intergenic | 60.0% | |
| CTCCCGCATATGCAGGGTCT+AGG | + | tig0043065:1486-1505 | Msa1463250:intron | 60.0% | |
| ACGCCGAGTCCGTCAGATCT+TGG | - | tig0043065:1767-1786 | Msa1463250:intergenic | 60.0% | |
| CGGCATCTTCAAGGCTGCTC+TGG | - | tig0043065:1802-1821 | Msa1463250:intergenic | 60.0% | |
| AGATGCCGGTGTGTCTCCTG+AGG | + | tig0043065:1814-1833 | Msa1463250:CDS | 60.0% | |
| GCGGTCTGCACACATGGTGT+TGG | + | tig0043065:2236-2255 | Msa1463250:intron | 60.0% | |
| ! | GCACACATGGTGTTGGGGTG+TGG | + | tig0043065:2243-2262 | Msa1463250:intron | 60.0% |
| ! | GGTCACTGTCTTGGTGCAGC+TGG | + | tig0043065:4065-4084 | Msa1463250:CDS | 60.0% |
| ! | CACTGTCTTGGTGCAGCTGG+GGG | + | tig0043065:4068-4087 | Msa1463250:CDS | 60.0% |
| ! | TCTTGGTGCAGCTGGGGGTT+TGG | + | tig0043065:4073-4092 | Msa1463250:CDS | 60.0% |
| !! | CGATGGTGGGACCCACTTAG+TGG | + | tig0043065:4360-4379 | Msa1463250:intron | 60.0% |
| GGTGGGACCCACTTAGTGGT+AGG | + | tig0043065:4364-4383 | Msa1463250:intron | 60.0% | |
| GCTTTCAGGCCCTGATTGCC+AGG | + | tig0043065:5217-5236 | Msa1463250:exon | 60.0% | |
| CGGTGAAGGACGGAGAGTGG+AGG | - | tig0043065:191-210 | None:intergenic | 65.0% | |
| GAGCGGTGAAGGACGGAGAG+TGG | - | tig0043065:194-213 | None:intergenic | 65.0% | |
| !! | GGTTTTGGCGGCGGAGGTGA+CGG | - | tig0043065:245-264 | None:intergenic | 65.0% |
| TTCTCTTTGCGGCGCGGTGG+TGG | - | tig0043065:302-321 | Msa1463250:intergenic | 65.0% | |
| TGCCGGTGTGTCTCCTGAGG+AGG | + | tig0043065:1817-1836 | Msa1463250:CDS | 65.0% | |
| ! | TTGCACGCAGCAGGGGGTGT+GGG | + | tig0043065:3327-3346 | Msa1463250:intron | 65.0% |
| ! | CAGCAGGGGGTGTGGGGAAA+GGG | + | tig0043065:3334-3353 | Msa1463250:intron | 65.0% |
| ! | GGCGGAGGTGACGGCATTGG+AGG | - | tig0043065:236-255 | None:intergenic | 70.0% |
| ! | TCTTTGCGGCGCGGTGGTGG+TGG | - | tig0043065:299-318 | Msa1463250:intergenic | 70.0% |
| CTTGCACGCAGCAGGGGGTG+TGG | + | tig0043065:3326-3345 | Msa1463250:intron | 70.0% | |
| ! | TGCACGCAGCAGGGGGTGTG+GGG | + | tig0043065:3328-3347 | Msa1463250:intron | 70.0% |
| ! | GCAGCAGGGGGTGTGGGGAA+AGG | + | tig0043065:3333-3352 | Msa1463250:intron | 70.0% |
| ! | GGCGGCGGAGGTGACGGCAT+TGG | - | tig0043065:239-258 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGTGACCGCGG+CGG | - | tig0043065:287-306 | Msa1463250:intergenic | 75.0% |
| !! | CGCGGTGGTGGTGGTGACCG+CGG | - | tig0043065:290-309 | Msa1463250:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043065 | gene | 1 | 5651 | 1 | ID=Msa1463250;Name=Msa1463250 |
| tig0043065 | mRNA | 1 | 5651 | 1 | ID=Msa1463250-mRNA-1;Parent=Msa1463250;Name=Msa1463250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=156|1|1|1|1|1|7|420|472 |
| tig0043065 | exon | 1 | 618 | 1 | ID=Msa1463250-mRNA-1:exon:23945;Parent=Msa1463250-mRNA-1 |
| tig0043065 | exon | 712 | 1143 | 712 | ID=Msa1463250-mRNA-1:exon:23946;Parent=Msa1463250-mRNA-1 |
| tig0043065 | exon | 1665 | 1838 | 1665 | ID=Msa1463250-mRNA-1:exon:23947;Parent=Msa1463250-mRNA-1 |
| tig0043065 | exon | 3820 | 3933 | 3820 | ID=Msa1463250-mRNA-1:exon:23948;Parent=Msa1463250-mRNA-1 |
| tig0043065 | exon | 4056 | 4157 | 4056 | ID=Msa1463250-mRNA-1:exon:23949;Parent=Msa1463250-mRNA-1 |
| tig0043065 | exon | 4967 | 5033 | 4967 | ID=Msa1463250-mRNA-1:exon:23950;Parent=Msa1463250-mRNA-1 |
| tig0043065 | exon | 5164 | 5651 | 5164 | ID=Msa1463250-mRNA-1:exon:23951;Parent=Msa1463250-mRNA-1 |
| tig0043065 | five_prime_UTR | 1 | 156 | 1 | ID=Msa1463250-mRNA-1:five_prime_utr;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 157 | 618 | 157 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 712 | 1143 | 712 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 1665 | 1838 | 1665 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 3820 | 3933 | 3820 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 4056 | 4157 | 4056 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 4967 | 5033 | 4967 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | CDS | 5164 | 5231 | 5164 | ID=Msa1463250-mRNA-1:cds;Parent=Msa1463250-mRNA-1 |
| tig0043065 | three_prime_UTR | 5232 | 5651 | 5232 | ID=Msa1463250-mRNA-1:three_prime_utr;Parent=Msa1463250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
