Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040180 | sp|P52410|KASC1_ARATH | 82.636 | 478 | 72 | 3 | 1 | 472 | 1 | 473 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040180 | Msa0087870 | 0.828362 | 9.375405e-55 | -8.615850e-47 |
| Msa0040180 | Msa0469810 | 0.808607 | 2.850723e-50 | -8.615850e-47 |
| Msa0040180 | Msa0475840 | 0.896827 | 2.538894e-76 | -8.615850e-47 |
| Msa0040180 | Msa0515360 | 0.808427 | 3.114582e-50 | -8.615850e-47 |
| Msa0040180 | Msa1463250 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040180 | MtrunA17_Chr1g0204841 | 99.364 | 472 | 3 | 0 | 1 | 472 | 1 | 472 | 0.0 | 968 |
| Msa0040180 | MtrunA17_Chr4g0052121 | 82.489 | 474 | 73 | 5 | 1 | 472 | 1 | 466 | 0.0 | 764 |
| Msa0040180 | MtrunA17_Chr8g0388511 | 74.674 | 383 | 97 | 0 | 45 | 427 | 2 | 384 | 0.0 | 618 |
| Msa0040180 | MtrunA17_Chr2g0301361 | 56.416 | 452 | 191 | 4 | 22 | 471 | 41 | 488 | 1.20e-176 | 504 |
| Msa0040180 | MtrunA17_Chr4g0070171 | 58.000 | 400 | 166 | 2 | 73 | 471 | 93 | 491 | 4.63e-170 | 488 |
| Msa0040180 | MtrunA17_Chr8g0388531 | 70.476 | 210 | 62 | 0 | 31 | 240 | 16 | 225 | 1.18e-104 | 311 |
| Msa0040180 | MtrunA17_Chr8g0388551 | 54.198 | 262 | 68 | 2 | 31 | 292 | 8 | 217 | 5.93e-93 | 285 |
| Msa0040180 | MtrunA17_Chr1g0183091 | 38.479 | 434 | 240 | 7 | 60 | 468 | 37 | 468 | 5.60e-90 | 282 |
| Msa0040180 | MtrunA17_Chr8g0388561 | 71.676 | 173 | 46 | 1 | 300 | 472 | 1 | 170 | 1.58e-87 | 265 |
| Msa0040180 | MtrunA17_Chr8g0388541 | 81.690 | 71 | 13 | 0 | 357 | 427 | 55 | 125 | 1.58e-34 | 125 |
| Msa0040180 | MtrunA17_Chr8g0388541 | 62.500 | 72 | 27 | 0 | 245 | 316 | 1 | 72 | 4.03e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040180 | AT5G46290.1 | 82.636 | 478 | 72 | 3 | 1 | 472 | 1 | 473 | 0.0 | 815 |
| Msa0040180 | AT5G46290.3 | 79.960 | 494 | 72 | 4 | 1 | 472 | 1 | 489 | 0.0 | 805 |
| Msa0040180 | AT5G46290.2 | 70.921 | 478 | 73 | 5 | 1 | 472 | 1 | 418 | 0.0 | 668 |
| Msa0040180 | AT1G74960.1 | 53.452 | 449 | 204 | 3 | 24 | 471 | 97 | 541 | 2.20e-169 | 488 |
| Msa0040180 | AT1G74960.3 | 53.452 | 449 | 204 | 3 | 24 | 471 | 97 | 541 | 2.20e-169 | 488 |
| Msa0040180 | AT1G74960.2 | 53.452 | 449 | 204 | 3 | 24 | 471 | 97 | 541 | 2.20e-169 | 488 |
| Msa0040180 | AT2G04540.1 | 38.391 | 435 | 238 | 9 | 60 | 469 | 31 | 460 | 1.55e-82 | 263 |
Find 144 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTATTATTGCTGAATATT+TGG | 0.107826 | 1_1:-70259533 | Msa0040180:CDS |
| TCCTTATGCTATTACAAATA+TGG | 0.113394 | 1_1:-70260405 | Msa0040180:CDS |
| GCTTTACTTGGGATTGATTT+AGG | 0.219677 | 1_1:-70260377 | Msa0040180:CDS |
| GCAGTTGAAATAGAATAATT+TGG | 0.222982 | 1_1:+70260344 | None:intergenic |
| TTCTTCTACATTGGAAATTT+CGG | 0.228440 | 1_1:+70261248 | None:intergenic |
| AGCGAATCGAGTTGGGAATT+TGG | 0.237235 | 1_1:+70260781 | None:intergenic |
| GGGAGAAGGTTCTGGAGTTT+TGG | 0.264837 | 1_1:-70260114 | Msa0040180:intron |
| TTTGTTATGGGAGAAGGTTC+TGG | 0.272709 | 1_1:-70260122 | Msa0040180:CDS |
| GACAAGTTGTTATTAATCTT+TGG | 0.273076 | 1_1:+70261192 | None:intergenic |
| CTCGCTTCATGGCATGTTCC+AGG | 0.286379 | 1_1:+70259560 | None:intergenic |
| CCTATTATTGCTGAATATTT+GGG | 0.287910 | 1_1:-70259532 | Msa0040180:CDS |
| TGCGATTATTCCAATTGGTT+TGG | 0.288023 | 1_1:-70260231 | Msa0040180:CDS |
| AGTTCTACAGCAAAAGTCTT+TGG | 0.290799 | 1_1:+70255966 | None:intergenic |
| GTAATCACAACACGCTTCTT+TGG | 0.291528 | 1_1:+70260908 | None:intergenic |
| ACGAGTGACTCTCTTGGTTT+TGG | 0.293212 | 1_1:+70260979 | None:intergenic |
| TATATCTTTAATTAACAATA+AGG | 0.294362 | 1_1:+70255859 | None:intergenic |
| TTCCACTCTTGCTGGTGATT+TGG | 0.297104 | 1_1:-70257518 | Msa0040180:CDS |
| ATGACCCTAAAACTGCTTCT+AGG | 0.311296 | 1_1:-70260169 | Msa0040180:CDS |
| CCAGGCATTTCAAATTCATT+TGG | 0.314348 | 1_1:-70256198 | Msa0040180:intron |
| CCTTATGCTATTACAAATAT+GGG | 0.317643 | 1_1:-70260404 | Msa0040180:CDS |
| ATTTCAAATTCATTTGGATT+TGG | 0.319137 | 1_1:-70256192 | Msa0040180:CDS |
| TCAAAATCAACTGCAGGTTC+TGG | 0.321272 | 1_1:+70256394 | None:intergenic |
| TGGGTGGTTTCGTTGCTTGC+AGG | 0.323684 | 1_1:-70260211 | Msa0040180:CDS |
| CCCAAATATTCAGCAATAAT+AGG | 0.335330 | 1_1:+70259532 | None:intergenic |
| GTTAAGAATTTGATTGAAAA+GGG | 0.338451 | 1_1:-70260455 | Msa0040180:CDS |
| GCGATTATTCCAATTGGTTT+GGG | 0.344160 | 1_1:-70260230 | Msa0040180:CDS |
| ATGGGTCTTGCTTCGGTGTT+TGG | 0.344743 | 1_1:-70260881 | Msa0040180:CDS |
| GGAGATTAATGCTATCAAAA+AGG | 0.351656 | 1_1:-70257494 | Msa0040180:CDS |
| AGCATATAATGAACAATTAC+AGG | 0.353040 | 1_1:+70256011 | None:intergenic |
| AAGAAGCGTGTTGTGATTAC+TGG | 0.354759 | 1_1:-70260905 | Msa0040180:CDS |
| GCACGAAGATTTCATTGGTT+TGG | 0.355311 | 1_1:-70255931 | Msa0040180:three_prime_UTR |
| CGGTGCTGCAAATCTATCTA+AGG | 0.355647 | 1_1:-70260639 | Msa0040180:intron |
| GGCGGCGGAGGTGGCGGCAT+TGG | 0.361340 | 1_1:+70261000 | None:intergenic |
| ATGCAGCCATCCTGTTGTTA+TGG | 0.364668 | 1_1:+70257247 | None:intergenic |
| AATATGGGTTCAGCTTTACT+TGG | 0.368154 | 1_1:-70260389 | Msa0040180:CDS |
| GCTTTCAGGCCCTGATTGCC+AGG | 0.377973 | 1_1:-70256141 | Msa0040180:exon |
| TGGCGGCATTGGAGGATTTA+CGG | 0.381506 | 1_1:+70261011 | None:intergenic |
| CACTCTTGCTGGTGATTTGG+CGG | 0.382291 | 1_1:-70257515 | Msa0040180:CDS |
| CAAAAGTCTTTGGAGCTAAC+TGG | 0.385274 | 1_1:+70255976 | None:intergenic |
| AGTTAAGAATTTGATTGAAA+AGG | 0.392053 | 1_1:-70260456 | Msa0040180:CDS |
| TAAGGAACGTGCTGGCGTTT+TGG | 0.393874 | 1_1:-70260519 | Msa0040180:CDS |
| CGGCATCTTCAAGGCTGCTC+TGG | 0.394560 | 1_1:+70259437 | None:intergenic |
| TTCTCTTTGCGGCGCGGTGG+TGG | 0.395427 | 1_1:+70260937 | None:intergenic |
| AATAGGTGCACCTCGCTTCA+TGG | 0.395532 | 1_1:+70259549 | None:intergenic |
| TACTGGTATGGGTCTTGCTT+CGG | 0.410766 | 1_1:-70260888 | Msa0040180:CDS |
| TCTTGTTATTGAATTGTTGT+CGG | 0.410900 | 1_1:-70255815 | Msa0040180:three_prime_UTR |
| AGAAGACAAGCCTGGCAATC+AGG | 0.414753 | 1_1:+70256131 | None:intergenic |
| CTAAAACTGCTTCTAGGCCT+TGG | 0.415317 | 1_1:-70260163 | Msa0040180:CDS |
| ACGCCAAGTCCGTCAGATCT+TGG | 0.420388 | 1_1:+70259472 | None:intergenic |
| CATGCAACTTCCACTCTTGC+TGG | 0.426755 | 1_1:-70257526 | Msa0040180:CDS |
| TCTGACCAGCGAATCGAGTT+GGG | 0.430793 | 1_1:+70260774 | None:intergenic |
| TCTTGGTGCAGCTGGCGGTT+TGG | 0.431148 | 1_1:-70257291 | Msa0040180:CDS |
| GGCGGAGGTGGCGGCATTGG+AGG | 0.431622 | 1_1:+70261003 | None:intergenic |
| TCAAATTCATTTGGATTTGG+TGG | 0.432807 | 1_1:-70256189 | Msa0040180:CDS |
| CCCATATTTGTAATAGCATA+AGG | 0.436887 | 1_1:+70260404 | None:intergenic |
| ACGAAACCACCCAAACCAAT+TGG | 0.448666 | 1_1:+70260221 | None:intergenic |
| CTCACCTCTACGAATGTGAT+TGG | 0.450144 | 1_1:+70260286 | None:intergenic |
| CGTACGAATTGATTGATTGA+GGG | 0.453619 | 1_1:+70257224 | None:intergenic |
| GTGTTCGAGTGCTTTCTTAC+CGG | 0.460627 | 1_1:+70260670 | None:intergenic |
| AGTGTCGAGAGAGCTTATTT+AGG | 0.462874 | 1_1:-70255889 | Msa0040180:three_prime_UTR |
| TAAAACTGCTTCTAGGCCTT+GGG | 0.469150 | 1_1:-70260162 | Msa0040180:CDS |
| TTCACAGGTATTGGAAAGCC+TGG | 0.471523 | 1_1:-70259578 | Msa0040180:intron |
| GGTCACTGTCTTGGTGCAGC+TGG | 0.473319 | 1_1:-70257299 | Msa0040180:CDS |
| ATGTAGCACGAAGATTTCAT+TGG | 0.475677 | 1_1:-70255936 | Msa0040180:three_prime_UTR |
| GATCCGTGACTTCAGTTCTG+AGG | 0.481182 | 1_1:-70260753 | Msa0040180:CDS |
| GAGACACACCGGCATCTTCA+AGG | 0.486243 | 1_1:+70259428 | None:intergenic |
| GCGTGTTGTGATTACTGGTA+TGG | 0.487195 | 1_1:-70260900 | Msa0040180:CDS |
| CTGTGATATCAGTCTATGAT+AGG | 0.488568 | 1_1:-70257320 | Msa0040180:intron |
| CACCGCGCCGCAAAGAGAAA+AGG | 0.488817 | 1_1:-70260933 | Msa0040180:CDS |
| CGCCAAATCACCAGCAAGAG+TGG | 0.490695 | 1_1:+70257516 | None:intergenic |
| CACTGTCTTGGTGCAGCTGG+CGG | 0.498846 | 1_1:-70257296 | Msa0040180:CDS |
| GAGGCTGCGATTATTCCAAT+TGG | 0.500761 | 1_1:-70260236 | Msa0040180:CDS |
| ACGTACGAATTGATTGATTG+AGG | 0.504368 | 1_1:+70257223 | None:intergenic |
| ACGGTGAAAGCCATAACAAC+AGG | 0.505006 | 1_1:-70257257 | Msa0040180:CDS |
| ATCTGACCAGCGAATCGAGT+TGG | 0.506976 | 1_1:+70260773 | None:intergenic |
| AGTGAGTGAATGAGTCTGTA+AGG | 0.507506 | 1_1:+70261157 | None:intergenic |
| GAATGAAACAGTACCTCCTC+AGG | 0.510763 | 1_1:+70259406 | None:intergenic |
| CGAAGTGGTTCGAGCGGTGA+AGG | 0.511174 | 1_1:+70261034 | None:intergenic |
| GGGTGGTTTCGTTGCTTGCA+GGG | 0.511680 | 1_1:-70260210 | Msa0040180:CDS |
| AAATTCCCAACTCGATTCGC+TGG | 0.512075 | 1_1:-70260779 | Msa0040180:CDS |
| GAAGACAAGCCTGGCAATCA+GGG | 0.514627 | 1_1:+70256132 | None:intergenic |
| CAGCAGCATGAAATTAATGT+TGG | 0.518157 | 1_1:-70256352 | Msa0040180:intron |
| TCTTTGCGGCGCGGTGGTGG+TGG | 0.521161 | 1_1:+70260940 | None:intergenic |
| GATCCAAGATCTGACGGACT+TGG | 0.527921 | 1_1:-70259475 | Msa0040180:CDS |
| GGAAGCATCAAATCTATCAA+TGG | 0.528121 | 1_1:+70260802 | None:intergenic |
| GAGCGGTGAAGGACGGAGAG+TGG | 0.530454 | 1_1:+70261045 | None:intergenic |
| CTGACGGAGAGTACGAAGAA+GGG | 0.531701 | 1_1:+70261133 | None:intergenic |
| TACCGGCGACAATGCAGTAC+CGG | 0.534477 | 1_1:+70260687 | None:intergenic |
| CTCCGGTACTGCATTGTCGC+CGG | 0.535935 | 1_1:-70260689 | Msa0040180:CDS |
| CAGATTGATAAGGAACGTGC+TGG | 0.538608 | 1_1:-70260527 | Msa0040180:CDS |
| GTGGTTCGAGCGGTGAAGGA+CGG | 0.542160 | 1_1:+70261038 | None:intergenic |
| CGCGGTGGTGGTGGTGACCG+CGG | 0.542608 | 1_1:+70260949 | None:intergenic |
| GCACTCGAACACGCTAATCT+CGG | 0.545558 | 1_1:-70260659 | Msa0040180:CDS |
| ATATGGGTTCAGCTTTACTT+GGG | 0.548003 | 1_1:-70260388 | Msa0040180:CDS |
| ACATGAAGAGAAGACAAGCC+TGG | 0.549620 | 1_1:+70256123 | None:intergenic |
| TTGTTCTCTCTACGTCATTG+AGG | 0.550892 | 1_1:-70256071 | Msa0040180:three_prime_UTR |
| AAGCTTCTCGCTGGTGAGAG+TGG | 0.557032 | 1_1:-70260833 | Msa0040180:CDS |
| TCTATGATAGGTCACTGTCT+TGG | 0.557980 | 1_1:-70257308 | Msa0040180:CDS |
| ATTATTCCAATTGGTTTGGG+TGG | 0.559742 | 1_1:-70260227 | Msa0040180:CDS |
| CGTGTTGTGATTACTGGTAT+GGG | 0.562884 | 1_1:-70260899 | Msa0040180:CDS |
| ATCCGTGACTTCAGTTCTGA+GGG | 0.564390 | 1_1:-70260752 | Msa0040180:CDS |
| AGTTCTGAGGGTTACATCGA+CGG | 0.564909 | 1_1:-70260740 | Msa0040180:CDS |
| TGGCAATCAGGGCCTGAAAG+CGG | 0.566778 | 1_1:+70256143 | None:intergenic |
| ACTGACGGAGAGTACGAAGA+AGG | 0.567054 | 1_1:+70261132 | None:intergenic |
| GGTGAAGGACGGAGAGTGGA+GGG | 0.567501 | 1_1:+70261049 | None:intergenic |
| TACTATGATAAGCTTCTCGC+TGG | 0.568248 | 1_1:-70260842 | Msa0040180:CDS |
| GGAGACAATCATCAAGTCTC+CGG | 0.571089 | 1_1:+70260708 | None:intergenic |
| GTTCTGAGGGTTACATCGAC+GGG | 0.572909 | 1_1:-70260739 | Msa0040180:CDS |
| AATCGCAGCCTCAGTCCCAC+CGG | 0.576961 | 1_1:+70260247 | None:intergenic |
| ATGACTGATCCAAGATCTGA+CGG | 0.577090 | 1_1:-70259481 | Msa0040180:CDS |
| ATGACATGCTAATACCTTGG+TGG | 0.577600 | 1_1:+70257438 | None:intergenic |
| ACATCGACGGGAAGAATGAC+CGG | 0.581180 | 1_1:-70260727 | Msa0040180:CDS |
| CAGAGCAGCCTTGAAGATGC+CGG | 0.581799 | 1_1:-70259436 | Msa0040180:CDS |
| ACTGTATCAAAATCAACTGC+AGG | 0.584010 | 1_1:+70256388 | None:intergenic |
| CGGTGAAGGACGGAGAGTGG+AGG | 0.584270 | 1_1:+70261048 | None:intergenic |
| TGGTGGACACAACTCTGTCG+TGG | 0.588850 | 1_1:-70256172 | Msa0040180:CDS |
| TTGGTTGGATCAGGAATGGG+TGG | 0.590587 | 1_1:-70260500 | Msa0040180:CDS |
| CCATCACGTTCTTTATCCCA+AGG | 0.592200 | 1_1:+70260146 | None:intergenic |
| GGAGATACGAGTGACTCTCT+TGG | 0.597645 | 1_1:+70260973 | None:intergenic |
| ATTATTGCTGAATATTTGGG+AGG | 0.597683 | 1_1:-70259529 | Msa0040180:CDS |
| AAATGACTGACACTCACTGA+CGG | 0.598984 | 1_1:+70261117 | None:intergenic |
| GAGGCTGATTTGATGATAGC+CGG | 0.603068 | 1_1:-70260266 | Msa0040180:CDS |
| GGAGACTTGATGATTGTCTC+CGG | 0.603610 | 1_1:-70260706 | Msa0040180:CDS |
| CGGTTTGGAAGCTATTGCCA+CGG | 0.603807 | 1_1:-70257276 | Msa0040180:CDS |
| TGCCGGTGTGTCTCCTGAGG+AGG | 0.610564 | 1_1:-70259419 | Msa0040180:intron |
| AACCCTCAGAACTGAAGTCA+CGG | 0.618872 | 1_1:+70260750 | None:intergenic |
| TGACGGAGAGTACGAAGAAG+GGG | 0.620473 | 1_1:+70261134 | None:intergenic |
| TTGGAGGATTTACGGCGAAG+TGG | 0.624191 | 1_1:+70261019 | None:intergenic |
| CCTTGGGATAAAGAACGTGA+TGG | 0.624852 | 1_1:-70260146 | Msa0040180:CDS |
| CATCAAAATAAATGCCACCA+AGG | 0.629679 | 1_1:-70257452 | Msa0040180:intron |
| CAATCACATTCGTAGAGGTG+AGG | 0.648046 | 1_1:-70260285 | Msa0040180:CDS |
| CTGGAACATGCCATGAAGCG+AGG | 0.648287 | 1_1:-70259559 | Msa0040180:CDS |
| TACCTCCTCAGGAGACACAC+CGG | 0.652572 | 1_1:+70259417 | None:intergenic |
| CTGATTTGATGATAGCCGGT+GGG | 0.653774 | 1_1:-70260262 | Msa0040180:CDS |
| TGTTGTTATGGCTTTCACCG+TGG | 0.656749 | 1_1:+70257259 | None:intergenic |
| GATGATAGCCGGTGGGACTG+AGG | 0.658607 | 1_1:-70260255 | Msa0040180:CDS |
| ATTGGTTTGGAGTTATACAG+CGG | 0.667298 | 1_1:-70255918 | Msa0040180:three_prime_UTR |
| TTACGGCGAAGTGGTTCGAG+CGG | 0.669961 | 1_1:+70261028 | None:intergenic |
| TGAAAGCCATAACAACAGGA+TGG | 0.674758 | 1_1:-70257253 | Msa0040180:CDS |
| AGATGCCGGTGTGTCTCCTG+AGG | 0.678881 | 1_1:-70259422 | Msa0040180:CDS |
| GGTGGTGGTGGTGACCGCGG+CGG | 0.695733 | 1_1:+70260952 | None:intergenic |
| GCTGATTTGATGATAGCCGG+TGG | 0.696770 | 1_1:-70260263 | Msa0040180:CDS |
| GCTGCCAATCACATTCGTAG+AGG | 0.700168 | 1_1:-70260290 | Msa0040180:CDS |
| AGTCACTCGTATCTCCGCCG+CGG | 0.777115 | 1_1:-70260966 | Msa0040180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACTAAC+TGG | - | chr1_1:70260755-70260774 | Msa0040180:CDS | 10.0% |
| !! | TATATCTTTAATTAACAATA+AGG | + | chr1_1:70261131-70261150 | None:intergenic | 10.0% |
| !! | AAATTTGAAAATCCAATTTA+AGG | + | chr1_1:70256426-70256445 | None:intergenic | 15.0% |
| !! | GCTAAAATTATCTATTTAAA+TGG | - | chr1_1:70257630-70257649 | Msa0040180:intron | 15.0% |
| !! | ATTTAATCCTATGATAAATA+GGG | - | chr1_1:70258047-70258066 | Msa0040180:intron | 15.0% |
| !!! | CTATTATCATTTTTCTTTTT+TGG | - | chr1_1:70258255-70258274 | Msa0040180:intron | 15.0% |
| !! | ACATAATAAAATTCATCTAT+TGG | - | chr1_1:70259180-70259199 | Msa0040180:intron | 15.0% |
| !!! | TATTTAATTCTTTGTTTTTC+AGG | - | chr1_1:70259788-70259807 | Msa0040180:intron | 15.0% |
| !! | TAAATAAGGTTATTATTGAA+CGG | + | chr1_1:70260185-70260204 | None:intergenic | 15.0% |
| !! | AAAAATAAAGGGATAAAATA+CGG | + | chr1_1:70260382-70260401 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGAAGGAAA+AGG | + | chr1_1:70260743-70260762 | None:intergenic | 15.0% |
| !!! | ACTACAACTTTTATATATTA+TGG | + | chr1_1:70260956-70260975 | None:intergenic | 15.0% |
| !!! | TGGTATTTAATGTATTTTGA+CGG | + | chr1_1:70255778-70255797 | None:intergenic | 20.0% |
| !! | AGTTAAGAATTTGATTGAAA+AGG | - | chr1_1:70256531-70256550 | Msa0040180:intron | 20.0% |
| !! | GTTAAGAATTTGATTGAAAA+GGG | - | chr1_1:70256532-70256551 | Msa0040180:intron | 20.0% |
| !! | ATAGCATAAGGAATAAAAAA+AGG | + | chr1_1:70256574-70256593 | None:intergenic | 20.0% |
| !!! | GTTACATTGATTAACAATAT+GGG | - | chr1_1:70256953-70256972 | Msa0040180:intron | 20.0% |
| !!! | TTACATTGATTAACAATATG+GGG | - | chr1_1:70256954-70256973 | Msa0040180:intron | 20.0% |
| !!! | ATATAGAAATTAGCTTGTAT+AGG | + | chr1_1:70257369-70257388 | None:intergenic | 20.0% |
| !! | TAATTTCTATATTGTAACGA+GGG | - | chr1_1:70257377-70257396 | Msa0040180:intron | 20.0% |
| !! | TTATCTATTTAAATGGTTGT+TGG | - | chr1_1:70257637-70257656 | Msa0040180:intron | 20.0% |
| !! | AGGAAAAAAATGAATCAAAT+GGG | + | chr1_1:70257673-70257692 | None:intergenic | 20.0% |
| !! | TTAATAGATGTGAAAAAGTT+AGG | - | chr1_1:70257900-70257919 | Msa0040180:intron | 20.0% |
| !! | CATTTAATCCTATGATAAAT+AGG | - | chr1_1:70258046-70258065 | Msa0040180:intron | 20.0% |
| !! | AAAAAAATAATTAACGATCG+TGG | - | chr1_1:70259969-70259988 | Msa0040180:intron | 20.0% |
| !! | AAAAAATAATTAACGATCGT+GGG | - | chr1_1:70259970-70259989 | Msa0040180:intron | 20.0% |
| !! | TCTCCATTTATGAAAATAAA+GGG | + | chr1_1:70260059-70260078 | None:intergenic | 20.0% |
| !!! | CTCATTTTATCTTTCAATAA+TGG | - | chr1_1:70260105-70260124 | Msa0040180:intron | 20.0% |
| !!! | TTATTTGTCATTTAAGACAA+TGG | + | chr1_1:70260330-70260349 | None:intergenic | 20.0% |
| !! | TGTCTTAAATGACAAATAAA+AGG | - | chr1_1:70260331-70260350 | Msa0040180:CDS | 20.0% |
| !! | ATTTCAAATTCATTTGGATT+TGG | - | chr1_1:70260795-70260814 | Msa0040180:CDS | 20.0% |
| ! | TTCTTCTACATTGGAAATTT+CGG | + | chr1_1:70255742-70255761 | None:intergenic | 25.0% |
| !! | AACTATGTTTTCTTCTACAT+TGG | + | chr1_1:70255751-70255770 | None:intergenic | 25.0% |
| !! | GACAAGTTGTTATTAATCTT+TGG | + | chr1_1:70255798-70255817 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGCAGATTGATA+AGG | - | chr1_1:70256450-70256469 | Msa0040180:intron | 25.0% |
| ! | TCCTTATGCTATTACAAATA+TGG | - | chr1_1:70256582-70256601 | Msa0040180:intron | 25.0% |
| ! | CCTTATGCTATTACAAATAT+GGG | - | chr1_1:70256583-70256602 | Msa0040180:intron | 25.0% |
| ! | GCAGTTGAAATAGAATAATT+TGG | + | chr1_1:70256646-70256665 | None:intergenic | 25.0% |
| ! | ACAAGAAGAAGAAAACATTA+AGG | + | chr1_1:70256922-70256941 | None:intergenic | 25.0% |
| !! | GGTTACATTGATTAACAATA+TGG | - | chr1_1:70256952-70256971 | Msa0040180:intron | 25.0% |
| !! | TACATTGATTAACAATATGG+GGG | - | chr1_1:70256955-70256974 | Msa0040180:intron | 25.0% |
| !!! | GGTTTAGAATCATTCTTTTT+TGG | + | chr1_1:70257288-70257307 | None:intergenic | 25.0% |
| ! | CTAATTTCTATATTGTAACG+AGG | - | chr1_1:70257376-70257395 | Msa0040180:intron | 25.0% |
| ! | ACCTATTATTGCTGAATATT+TGG | - | chr1_1:70257454-70257473 | Msa0040180:CDS | 25.0% |
| ! | CCTATTATTGCTGAATATTT+GGG | - | chr1_1:70257455-70257474 | Msa0040180:CDS | 25.0% |
| ! | GAGGAAAAAAATGAATCAAA+TGG | + | chr1_1:70257674-70257693 | None:intergenic | 25.0% |
| !!! | ATTTTAGTACACGATACAAT+AGG | - | chr1_1:70257769-70257788 | Msa0040180:intron | 25.0% |
| !! | TTTTAGTACACGATACAATA+GGG | - | chr1_1:70257770-70257789 | Msa0040180:intron | 25.0% |
| ! | GTCTTCCTATTACATAAATT+AGG | - | chr1_1:70257931-70257950 | Msa0040180:intron | 25.0% |
| ! | TGCATCCTAATTTATGTAAT+AGG | + | chr1_1:70257939-70257958 | None:intergenic | 25.0% |
| ! | AAATGCAAGAAAAATATGCA+CGG | - | chr1_1:70258082-70258101 | Msa0040180:intron | 25.0% |
| ! | AACTTGAATCATGAAGAAAA+AGG | - | chr1_1:70258386-70258405 | Msa0040180:intron | 25.0% |
| !! | CCTTTATTTCATCAAGAATA+TGG | + | chr1_1:70258700-70258719 | None:intergenic | 25.0% |
| ! | CCATATTCTTGATGAAATAA+AGG | - | chr1_1:70258697-70258716 | Msa0040180:intron | 25.0% |
| ! | TGATGAAATAAAGGAGAATT+TGG | - | chr1_1:70258706-70258725 | Msa0040180:intron | 25.0% |
| ! | TAAAATAACAGGAGTTCATT+TGG | + | chr1_1:70258761-70258780 | None:intergenic | 25.0% |
| ! | TTTCATATCGCTAAAATAAC+AGG | + | chr1_1:70258772-70258791 | None:intergenic | 25.0% |
| ! | ATTTCTTGATTTATACCTCA+AGG | - | chr1_1:70258793-70258812 | Msa0040180:intron | 25.0% |
| ! | GCAAACATATAAATAGATAC+TGG | + | chr1_1:70259115-70259134 | None:intergenic | 25.0% |
| ! | AAATTCATCTATTGGATGTA+AGG | - | chr1_1:70259188-70259207 | Msa0040180:intron | 25.0% |
| ! | AATTCATCTATTGGATGTAA+GGG | - | chr1_1:70259189-70259208 | Msa0040180:intron | 25.0% |
| !!! | ATAAACTCATTTTTTTGCAG+AGG | + | chr1_1:70259225-70259244 | None:intergenic | 25.0% |
| ! | TCATTCATTAGGTCAAATAT+GGG | - | chr1_1:70259259-70259278 | Msa0040180:intron | 25.0% |
| ! | ATAACCTACTATGATTTAGA+AGG | + | chr1_1:70259605-70259624 | None:intergenic | 25.0% |
| !!! | ATTCTTTGTTTTTCAGGATT+AGG | - | chr1_1:70259794-70259813 | Msa0040180:intron | 25.0% |
| ! | ACACACAAAAAATAAGATGT+GGG | + | chr1_1:70260014-70260033 | None:intergenic | 25.0% |
| ! | TACACACAAAAAATAAGATG+TGG | + | chr1_1:70260015-70260034 | None:intergenic | 25.0% |
| ! | CTCTCCATTTATGAAAATAA+AGG | + | chr1_1:70260060-70260079 | None:intergenic | 25.0% |
| !!! | CTTTATTTTCATAAATGGAG+AGG | - | chr1_1:70260058-70260077 | Msa0040180:intron | 25.0% |
| ! | CAAAATGAAAGCTAAAAAAC+AGG | + | chr1_1:70260220-70260239 | None:intergenic | 25.0% |
| !! | TACAATAAGGACATTTTAGA+TGG | - | chr1_1:70260247-70260266 | Msa0040180:CDS | 25.0% |
| !! | TAGACTAAAAGATGTGTTTT+AGG | - | chr1_1:70260504-70260523 | Msa0040180:CDS | 25.0% |
| ! | GCATGATAAAGATCATAATT+TGG | - | chr1_1:70260701-70260720 | Msa0040180:CDS | 25.0% |
| ! | AGCATATAATGAACAATTAC+AGG | + | chr1_1:70260979-70260998 | None:intergenic | 25.0% |
| !!! | TCTTGTTATTGAATTGTTGT+CGG | - | chr1_1:70261172-70261191 | Msa0040180:five_prime_UTR | 25.0% |
| TTTCTCACTGAACCTTAAAT+TGG | - | chr1_1:70256411-70256430 | Msa0040180:intron | 30.0% | |
| CCCATATTTGTAATAGCATA+AGG | + | chr1_1:70256586-70256605 | None:intergenic | 30.0% | |
| !! | TGGGATTGATTTAGGTTTTA+TGG | - | chr1_1:70256618-70256637 | Msa0040180:intron | 30.0% |
| !! | GGGATTGATTTAGGTTTTAT+GGG | - | chr1_1:70256619-70256638 | Msa0040180:intron | 30.0% |
| ! | ACATTGATTAACAATATGGG+GGG | - | chr1_1:70256956-70256975 | Msa0040180:intron | 30.0% |
| !!! | CTTTTTTGGATCATGTAAGA+TGG | + | chr1_1:70257274-70257293 | None:intergenic | 30.0% |
| TTAAACACTTCAAAGATGCA+AGG | + | chr1_1:70257309-70257328 | None:intergenic | 30.0% | |
| TACTATAACTTCACAGGTAT+TGG | - | chr1_1:70257400-70257419 | Msa0040180:intron | 30.0% | |
| CCCAAATATTCAGCAATAAT+AGG | + | chr1_1:70257458-70257477 | None:intergenic | 30.0% | |
| ATTATTGCTGAATATTTGGG+AGG | - | chr1_1:70257458-70257477 | Msa0040180:CDS | 30.0% | |
| TTTAGTACACGATACAATAG+GGG | - | chr1_1:70257771-70257790 | Msa0040180:intron | 30.0% | |
| ! | ATGTAGTTATGGTTTCAAGT+AGG | - | chr1_1:70257845-70257864 | Msa0040180:intron | 30.0% |
| TTCATCTCCCTATTTATCAT+AGG | + | chr1_1:70258057-70258076 | None:intergenic | 30.0% | |
| !! | TCGATTTTAGTCATTTCTGT+TGG | - | chr1_1:70258165-70258184 | Msa0040180:intron | 30.0% |
| !! | CGATTTTAGTCATTTCTGTT+GGG | - | chr1_1:70258166-70258185 | Msa0040180:intron | 30.0% |
| GTATAATGTATGTATAACCC+AGG | + | chr1_1:70258232-70258251 | None:intergenic | 30.0% | |
| GCAAACGATGAATATATAGA+TGG | - | chr1_1:70258323-70258342 | Msa0040180:intron | 30.0% | |
| AACGATGAATATATAGATGG+AGG | - | chr1_1:70258326-70258345 | Msa0040180:intron | 30.0% | |
| ACGATGAATATATAGATGGA+GGG | - | chr1_1:70258327-70258346 | Msa0040180:intron | 30.0% | |
| ! | TAGAAGGACTTTTGTGATTT+TGG | - | chr1_1:70258438-70258457 | Msa0040180:intron | 30.0% |
| ! | TGATTTTGGATCAAAATTCC+TGG | - | chr1_1:70258452-70258471 | Msa0040180:intron | 30.0% |
| ! | GATTTTGGATCAAAATTCCT+GGG | - | chr1_1:70258453-70258472 | Msa0040180:intron | 30.0% |
| GAACTTGCAACAATTATGAA+CGG | - | chr1_1:70258499-70258518 | Msa0040180:intron | 30.0% | |
| ! | CCAGTTTTTCTCACTAAATT+CGG | + | chr1_1:70258632-70258651 | None:intergenic | 30.0% |
| ! | TTCTGTTATACCCGTTTTAT+GGG | + | chr1_1:70258859-70258878 | None:intergenic | 30.0% |
| ! | TTTCTGTTATACCCGTTTTA+TGG | + | chr1_1:70258860-70258879 | None:intergenic | 30.0% |
| TACACAGAGAAAAGAGTAAA+TGG | + | chr1_1:70259085-70259104 | None:intergenic | 30.0% | |
| CTCATTCATTAGGTCAAATA+TGG | - | chr1_1:70259258-70259277 | Msa0040180:intron | 30.0% | |
| CATTCATTAGGTCAAATATG+GGG | - | chr1_1:70259260-70259279 | Msa0040180:intron | 30.0% | |
| GTAGAAATCAGTCTTAACAT+TGG | - | chr1_1:70259353-70259372 | Msa0040180:intron | 30.0% | |
| !! | TATGCCATTTGCTTATTTTC+AGG | - | chr1_1:70259421-70259440 | Msa0040180:CDS | 30.0% |
| TTGACCTGAAAATAAGCAAA+TGG | + | chr1_1:70259428-70259447 | None:intergenic | 30.0% | |
| GGAGATTAATGCTATCAAAA+AGG | - | chr1_1:70259493-70259512 | Msa0040180:CDS | 30.0% | |
| ! | TGCTATCAAAAAGGTTTTCA+AGG | - | chr1_1:70259502-70259521 | Msa0040180:CDS | 30.0% |
| GTTATAGTTGATCAATTCCA+TGG | - | chr1_1:70259620-70259639 | Msa0040180:intron | 30.0% | |
| !!! | TTTTTCAGGATTAGGATTGT+TGG | - | chr1_1:70259802-70259821 | Msa0040180:intron | 30.0% |
| !! | TTTTCAGGATTAGGATTGTT+GGG | - | chr1_1:70259803-70259822 | Msa0040180:intron | 30.0% |
| ATTTCTCCAAATGGAAGAAA+TGG | + | chr1_1:70259924-70259943 | None:intergenic | 30.0% | |
| ! | TGTGTCTTTATTTCTCCAAA+TGG | + | chr1_1:70259933-70259952 | None:intergenic | 30.0% |
| TGTGTGTATCTCTTTCTAAA+TGG | - | chr1_1:70260027-70260046 | Msa0040180:intron | 30.0% | |
| CCATTTATGAAAATAAAGGG+AGG | + | chr1_1:70260056-70260075 | None:intergenic | 30.0% | |
| !!! | CCTCCCTTTATTTTCATAAA+TGG | - | chr1_1:70260053-70260072 | Msa0040180:intron | 30.0% |
| GAAAGATAAAATGAGACAGA+AGG | + | chr1_1:70260100-70260119 | None:intergenic | 30.0% | |
| ! | AGTGAAAGATAATTTGAGAC+AGG | + | chr1_1:70260131-70260150 | None:intergenic | 30.0% |
| ! | ATTTTGCTCTTGCTACAATA+AGG | - | chr1_1:70260234-70260253 | Msa0040180:CDS | 30.0% |
| TGACAAATAAAAGGAGACAA+TGG | - | chr1_1:70260340-70260359 | Msa0040180:CDS | 30.0% | |
| GACAAATAAAAGGAGACAAT+GGG | - | chr1_1:70260341-70260360 | Msa0040180:CDS | 30.0% | |
| TCCAGGTGAGTAAAAATAAA+GGG | + | chr1_1:70260393-70260412 | None:intergenic | 30.0% | |
| ATCCAGGTGAGTAAAAATAA+AGG | + | chr1_1:70260394-70260413 | None:intergenic | 30.0% | |
| TCAAATTCATTTGGATTTGG+TGG | - | chr1_1:70260798-70260817 | Msa0040180:CDS | 30.0% | |
| ! | TTTGGATCCTTTTCTCTTTG+CGG | + | chr1_1:70256064-70256083 | None:intergenic | 35.0% |
| !! | GGAAGCATCAAATCTATCAA+TGG | + | chr1_1:70256188-70256207 | None:intergenic | 35.0% |
| ! | CTGCAAATCTATCTAAGGTT+CGG | - | chr1_1:70256353-70256372 | Msa0040180:CDS | 35.0% |
| ! | GGTTTAACTGTGTTTTCTGA+AGG | - | chr1_1:70256508-70256527 | Msa0040180:intron | 35.0% |
| AATATGGGTTCAGCTTTACT+TGG | - | chr1_1:70256598-70256617 | Msa0040180:intron | 35.0% | |
| ATATGGGTTCAGCTTTACTT+GGG | - | chr1_1:70256599-70256618 | Msa0040180:intron | 35.0% | |
| ! | GCTTTACTTGGGATTGATTT+AGG | - | chr1_1:70256610-70256629 | Msa0040180:intron | 35.0% |
| TGCGATTATTCCAATTGGTT+TGG | - | chr1_1:70256756-70256775 | Msa0040180:intron | 35.0% | |
| ! | GCGATTATTCCAATTGGTTT+GGG | - | chr1_1:70256757-70256776 | Msa0040180:intron | 35.0% |
| !! | ATTATTCCAATTGGTTTGGG+TGG | - | chr1_1:70256760-70256779 | Msa0040180:intron | 35.0% |
| !!! | AGAACGTGATGGTTTTGTTA+TGG | - | chr1_1:70256852-70256871 | Msa0040180:intron | 35.0% |
| !!! | GAACGTGATGGTTTTGTTAT+GGG | - | chr1_1:70256853-70256872 | Msa0040180:intron | 35.0% |
| !! | CTTCTTCTTGTTGTTGTTGT+TGG | - | chr1_1:70256931-70256950 | Msa0040180:intron | 35.0% |
| GCTATACTTGCTTCTTAAGA+TGG | - | chr1_1:70257140-70257159 | Msa0040180:intron | 35.0% | |
| ! | TTTTCCTTTGTACATGATCC+CGG | - | chr1_1:70257204-70257223 | Msa0040180:intron | 35.0% |
| TTTGGATCATGTAAGATGGT+GGG | + | chr1_1:70257270-70257289 | None:intergenic | 35.0% | |
| ! | TTTTGGATCATGTAAGATGG+TGG | + | chr1_1:70257271-70257290 | None:intergenic | 35.0% |
| !!! | TTGTGTGTGTCCTGTTTTTT+TGG | - | chr1_1:70257341-70257360 | Msa0040180:intron | 35.0% |
| !!! | TGTGTGTGTCCTGTTTTTTT+GGG | - | chr1_1:70257342-70257361 | Msa0040180:intron | 35.0% |
| TGTATAGGACCCAAAAAAAC+AGG | + | chr1_1:70257354-70257373 | None:intergenic | 35.0% | |
| ACTGTTTCATTCTCTTTACC+CGG | - | chr1_1:70257592-70257611 | Msa0040180:intron | 35.0% | |
| ! | TAGCAACAAAAAGTGTAAGC+CGG | + | chr1_1:70257614-70257633 | None:intergenic | 35.0% |
| AGAAAGGAAAAACATGCTGA+AGG | + | chr1_1:70257696-70257715 | None:intergenic | 35.0% | |
| ! | TTCAGCATGTTTTTCCTTTC+TGG | - | chr1_1:70257695-70257714 | Msa0040180:intron | 35.0% |
| TTTCTGTTTGCTTGCAATAC+TGG | - | chr1_1:70257729-70257748 | Msa0040180:intron | 35.0% | |
| ! | TGAAGAGTATACATGTGAAG+CGG | - | chr1_1:70257968-70257987 | Msa0040180:intron | 35.0% |
| ! | AGCATTGAAGAGAAAAGCTA+AGG | - | chr1_1:70258109-70258128 | Msa0040180:intron | 35.0% |
| ! | TGGGTTTTCTCTTGTAATTC+AGG | - | chr1_1:70258185-70258204 | Msa0040180:intron | 35.0% |
| ! | GGGTTTTCTCTTGTAATTCA+GGG | - | chr1_1:70258186-70258205 | Msa0040180:intron | 35.0% |
| TAAAACTGTTATCAGTGCCT+GGG | - | chr1_1:70258212-70258231 | Msa0040180:intron | 35.0% | |
| !! | TAACACCAGTTGGTAAAAAC+TGG | + | chr1_1:70258282-70258301 | None:intergenic | 35.0% |
| AATATATAGATGGAGGGAAG+TGG | - | chr1_1:70258333-70258352 | Msa0040180:intron | 35.0% | |
| ATATATAGATGGAGGGAAGT+GGG | - | chr1_1:70258334-70258353 | Msa0040180:intron | 35.0% | |
| ATATTATGATCCCCTCTAGA+AGG | - | chr1_1:70258422-70258441 | Msa0040180:intron | 35.0% | |
| ATCACAAAAGTCCTTCTAGA+GGG | + | chr1_1:70258436-70258455 | None:intergenic | 35.0% | |
| AATCACAAAAGTCCTTCTAG+AGG | + | chr1_1:70258437-70258456 | None:intergenic | 35.0% | |
| GATCAAAATTCCTGGGATAA+GGG | - | chr1_1:70258460-70258479 | Msa0040180:intron | 35.0% | |
| ACAATTATGAACGGCAAAGA+CGG | - | chr1_1:70258508-70258527 | Msa0040180:intron | 35.0% | |
| GGAATGAGTTTACACTTTAC+AGG | + | chr1_1:70258577-70258596 | None:intergenic | 35.0% | |
| ! | GTTTTTCTCACTAAATTCGG+TGG | + | chr1_1:70258629-70258648 | None:intergenic | 35.0% |
| CCGAATTTAGTGAGAAAAAC+TGG | - | chr1_1:70258629-70258648 | Msa0040180:intron | 35.0% | |
| AAAAACTGGACACATTTCCA+TGG | - | chr1_1:70258643-70258662 | Msa0040180:intron | 35.0% | |
| TGATTTATACCTCAAGGACA+AGG | - | chr1_1:70258799-70258818 | Msa0040180:intron | 35.0% | |
| TTAGGTAACCACCCATAAAA+CGG | - | chr1_1:70258845-70258864 | Msa0040180:intron | 35.0% | |
| !!! | TTGTGCTTTATTTTCACAGC+TGG | + | chr1_1:70258905-70258924 | None:intergenic | 35.0% |
| AAGGGACAGAATTCTTATGA+TGG | - | chr1_1:70258954-70258973 | Msa0040180:intron | 35.0% | |
| ! | CAGAATTCTTATGATGGAGT+TGG | - | chr1_1:70258960-70258979 | Msa0040180:intron | 35.0% |
| TGATGGAGTTGGATGATAAA+TGG | - | chr1_1:70258971-70258990 | Msa0040180:intron | 35.0% | |
| GATGGAGTTGGATGATAAAT+GGG | - | chr1_1:70258972-70258991 | Msa0040180:intron | 35.0% | |
| TACAACTAGCACAAGGAATT+TGG | + | chr1_1:70259060-70259079 | None:intergenic | 35.0% | |
| AATGGAATACAACTAGCACA+AGG | + | chr1_1:70259067-70259086 | None:intergenic | 35.0% | |
| ! | ACTCTTTTCTCTGTGTACTT+TGG | - | chr1_1:70259088-70259107 | Msa0040180:intron | 35.0% |
| !!! | AACTCATTTTTTTGCAGAGG+AGG | + | chr1_1:70259222-70259241 | None:intergenic | 35.0% |
| AAGCTGCTAATGGAAATAAG+AGG | - | chr1_1:70259286-70259305 | Msa0040180:intron | 35.0% | |
| CATCAAAATAAATGCCACCA+AGG | - | chr1_1:70259535-70259554 | Msa0040180:CDS | 35.0% | |
| CAAATGACATGCTAATACCT+TGG | + | chr1_1:70259555-70259574 | None:intergenic | 35.0% | |
| ! | TGTCATTTGCTCTTATTTGC+TGG | - | chr1_1:70259566-70259585 | Msa0040180:CDS | 35.0% |
| TCTGCCTTCTAAATCATAGT+AGG | - | chr1_1:70259598-70259617 | Msa0040180:intron | 35.0% | |
| AGAACGTATGCATCAGTTAA+TGG | + | chr1_1:70259646-70259665 | None:intergenic | 35.0% | |
| CTGTGATATCAGTCTATGAT+AGG | - | chr1_1:70259667-70259686 | Msa0040180:intron | 35.0% | |
| CGTACGAATTGATTGATTGA+GGG | + | chr1_1:70259766-70259785 | None:intergenic | 35.0% | |
| ACGTACGAATTGATTGATTG+AGG | + | chr1_1:70259767-70259786 | None:intergenic | 35.0% | |
| GAAATGGAGAAGGACATAAA+TGG | + | chr1_1:70259908-70259927 | None:intergenic | 35.0% | |
| !! | GGTTGAGGTACTGATAAATA+AGG | + | chr1_1:70260199-70260218 | None:intergenic | 35.0% |
| GAAAGCTAAAAAACAGGTTG+AGG | + | chr1_1:70260214-70260233 | None:intergenic | 35.0% | |
| !!! | TCCCTTTATTTTTACTCACC+TGG | - | chr1_1:70260389-70260408 | Msa0040180:CDS | 35.0% |
| !!! | GTCTTGTTGTTTTCATTGCT+CGG | - | chr1_1:70260465-70260484 | Msa0040180:CDS | 35.0% |
| ! | TGTTTTCATTGCTCGGTAAT+TGG | - | chr1_1:70260472-70260491 | Msa0040180:CDS | 35.0% |
| ! | GTTTTCATTGCTCGGTAATT+GGG | - | chr1_1:70260473-70260492 | Msa0040180:CDS | 35.0% |
| CATAATCATTCTGTTTGCCT+TGG | - | chr1_1:70260555-70260574 | Msa0040180:intron | 35.0% | |
| ACTGTATCAAAATCAACTGC+AGG | + | chr1_1:70260602-70260621 | None:intergenic | 35.0% | |
| !! | TGCAGTTGATTTTGATACAG+TGG | - | chr1_1:70260601-70260620 | Msa0040180:intron | 35.0% |
| CAGCAGCATGAAATTAATGT+TGG | - | chr1_1:70260635-70260654 | Msa0040180:intron | 35.0% | |
| TGCGAAAATGAAAAATGCAC+TGG | + | chr1_1:70260684-70260703 | None:intergenic | 35.0% | |
| TGAAATGCCTGGAAAAAGAA+AGG | + | chr1_1:70260781-70260800 | None:intergenic | 35.0% | |
| ! | CCAAATGAATTTGAAATGCC+TGG | + | chr1_1:70260792-70260811 | None:intergenic | 35.0% |
| CCAGGCATTTCAAATTCATT+TGG | - | chr1_1:70260789-70260808 | Msa0040180:CDS | 35.0% | |
| AGTTCTACAGCAAAAGTCTT+TGG | + | chr1_1:70261024-70261043 | None:intergenic | 35.0% | |
| ATGTAGCACGAAGATTTCAT+TGG | - | chr1_1:70261051-70261070 | Msa0040180:CDS | 35.0% | |
| !! | ATTGGTTTGGAGTTATACAG+CGG | - | chr1_1:70261069-70261088 | Msa0040180:CDS | 35.0% |
| AGTGAGTGAATGAGTCTGTA+AGG | + | chr1_1:70255833-70255852 | None:intergenic | 40.0% | |
| AAATGACTGACACTCACTGA+CGG | + | chr1_1:70255873-70255892 | None:intergenic | 40.0% | |
| GTAATCACAACACGCTTCTT+TGG | + | chr1_1:70256082-70256101 | None:intergenic | 40.0% | |
| ! | AAGAAGCGTGTTGTGATTAC+TGG | - | chr1_1:70256082-70256101 | Msa0040180:three_prime_UTR | 40.0% |
| CGTGTTGTGATTACTGGTAT+GGG | - | chr1_1:70256088-70256107 | Msa0040180:three_prime_UTR | 40.0% | |
| TACTATGATAAGCTTCTCGC+TGG | - | chr1_1:70256145-70256164 | Msa0040180:exon | 40.0% | |
| !!! | GTTTTGGTTGGATCAGGAAT+GGG | - | chr1_1:70256484-70256503 | Msa0040180:intron | 40.0% |
| ATGACCCTAAAACTGCTTCT+AGG | - | chr1_1:70256818-70256837 | Msa0040180:intron | 40.0% | |
| ! | AAGGCCTAGAAGCAGTTTTA+GGG | + | chr1_1:70256825-70256844 | None:intergenic | 40.0% |
| TAAAACTGCTTCTAGGCCTT+GGG | - | chr1_1:70256825-70256844 | Msa0040180:intron | 40.0% | |
| !!! | GATGGTTTTGTTATGGGAGA+AGG | - | chr1_1:70256859-70256878 | Msa0040180:intron | 40.0% |
| ! | TTTGTTATGGGAGAAGGTTC+TGG | - | chr1_1:70256865-70256884 | Msa0040180:intron | 40.0% |
| !!! | AAGGTTCTGGAGTTTTGGTT+AGG | - | chr1_1:70256878-70256897 | Msa0040180:intron | 40.0% |
| TGATTAACAATATGGGGGGT+TGG | - | chr1_1:70256960-70256979 | Msa0040180:intron | 40.0% | |
| TTAACAATATGGGCAGCTCA+AGG | - | chr1_1:70256983-70257002 | Msa0040180:intron | 40.0% | |
| TAACAATATGGGCAGCTCAA+GGG | - | chr1_1:70256984-70257003 | Msa0040180:intron | 40.0% | |
| AAAACAGGACACACACAACA+TGG | + | chr1_1:70257339-70257358 | None:intergenic | 40.0% | |
| ATGACTGATCCAAGATCTGA+CGG | - | chr1_1:70257506-70257525 | Msa0040180:CDS | 40.0% | |
| ! | AGCAACAAAAAGTGTAAGCC+GGG | + | chr1_1:70257613-70257632 | None:intergenic | 40.0% |
| AAGGAAAAACATGCTGAAGG+AGG | + | chr1_1:70257693-70257712 | None:intergenic | 40.0% | |
| AGCAAACAGAAACGTAGAGT+CGG | + | chr1_1:70257721-70257740 | None:intergenic | 40.0% | |
| !!! | TGCTATTTTTCATGCATGCC+AGG | + | chr1_1:70257801-70257820 | None:intergenic | 40.0% |
| TAGCTGCTGCTATGTAGTTA+TGG | - | chr1_1:70257834-70257853 | Msa0040180:intron | 40.0% | |
| ! | TAAGGCCTCTAAAAAAGCCT+TGG | - | chr1_1:70258127-70258146 | Msa0040180:intron | 40.0% |
| ! | AAGGCCTCTAAAAAAGCCTT+GGG | - | chr1_1:70258128-70258147 | Msa0040180:intron | 40.0% |
| GAATGAAATTAGTCAGCCCA+AGG | + | chr1_1:70258147-70258166 | None:intergenic | 40.0% | |
| CTAAAACTGTTATCAGTGCC+TGG | - | chr1_1:70258211-70258230 | Msa0040180:intron | 40.0% | |
| ! | TTGGTCCAGTTTTTACCAAC+TGG | - | chr1_1:70258274-70258293 | Msa0040180:intron | 40.0% |
| !! | GTTTTGATGCCTTTTACGAG+AGG | + | chr1_1:70258369-70258388 | None:intergenic | 40.0% |
| GGGGATCATAATATCTCATC+TGG | + | chr1_1:70258416-70258435 | None:intergenic | 40.0% | |
| ! | TCACAAAAGTCCTTCTAGAG+GGG | + | chr1_1:70258435-70258454 | None:intergenic | 40.0% |
| GGATCAAAATTCCTGGGATA+AGG | - | chr1_1:70258459-70258478 | Msa0040180:intron | 40.0% | |
| ! | ATTCCTGTTTCAGCCTTGTA+TGG | - | chr1_1:70258592-70258611 | Msa0040180:intron | 40.0% |
| GGTTTCATCTCTACCATACA+AGG | + | chr1_1:70258608-70258627 | None:intergenic | 40.0% | |
| !! | GGAAGGCATTGCTAATATTG+TGG | - | chr1_1:70258667-70258686 | Msa0040180:intron | 40.0% |
| CTGTGCGTGTTTGTATTCTT+AGG | - | chr1_1:70258827-70258846 | Msa0040180:intron | 40.0% | |
| TAGGTAACCACCCATAAAAC+GGG | - | chr1_1:70258846-70258865 | Msa0040180:intron | 40.0% | |
| ! | TGTTATACCCGTTTTATGGG+TGG | + | chr1_1:70258856-70258875 | None:intergenic | 40.0% |
| AGACGCTCTGTGAATGAATT+GGG | - | chr1_1:70259023-70259042 | Msa0040180:intron | 40.0% | |
| ACTAGCACAAGGAATTTGGT+AGG | + | chr1_1:70259056-70259075 | None:intergenic | 40.0% | |
| TAATGAATGAGCGAGTAGCT+GGG | + | chr1_1:70259249-70259268 | None:intergenic | 40.0% | |
| !! | AAGGTTTTCAAGGACACTTC+TGG | - | chr1_1:70259512-70259531 | Msa0040180:CDS | 40.0% |
| ATGACATGCTAATACCTTGG+TGG | + | chr1_1:70259552-70259571 | None:intergenic | 40.0% | |
| TATGCATCAGTTAATGGCCA+TGG | + | chr1_1:70259640-70259659 | None:intergenic | 40.0% | |
| TCTATGATAGGTCACTGTCT+TGG | - | chr1_1:70259679-70259698 | Msa0040180:intron | 40.0% | |
| TGAAAGCCATAACAACAGGA+TGG | - | chr1_1:70259734-70259753 | Msa0040180:intron | 40.0% | |
| GTTAGAACCAAATGAGTGCT+CGG | - | chr1_1:70259831-70259850 | Msa0040180:intron | 40.0% | |
| TTAGAACCAAATGAGTGCTC+GGG | - | chr1_1:70259832-70259851 | Msa0040180:intron | 40.0% | |
| AGTGCTCGGGCATTTATTAT+TGG | - | chr1_1:70259845-70259864 | Msa0040180:intron | 40.0% | |
| CCAAATGGAAGAAATGGAGA+AGG | + | chr1_1:70259918-70259937 | None:intergenic | 40.0% | |
| CCTTCTCCATTTCTTCCATT+TGG | - | chr1_1:70259915-70259934 | Msa0040180:intron | 40.0% | |
| CAGCACAACAAAAAGAATCC+AGG | + | chr1_1:70260410-70260429 | None:intergenic | 40.0% | |
| TCAAAATCAACTGCAGGTTC+TGG | + | chr1_1:70260596-70260615 | None:intergenic | 40.0% | |
| !!! | TAACTGGCCTTTCTTTTTCC+AGG | - | chr1_1:70260771-70260790 | Msa0040180:CDS | 40.0% |
| TTGTTCTCTCTACGTCATTG+AGG | - | chr1_1:70260916-70260935 | Msa0040180:CDS | 40.0% | |
| !! | CAAAAGTCTTTGGAGCTAAC+TGG | + | chr1_1:70261014-70261033 | None:intergenic | 40.0% |
| ! | GCACGAAGATTTCATTGGTT+TGG | - | chr1_1:70261056-70261075 | Msa0040180:CDS | 40.0% |
| ! | AGTGTCGAGAGAGCTTATTT+AGG | - | chr1_1:70261098-70261117 | Msa0040180:exon | 40.0% |
| !!! | AGTGACTCTCTTGGTTTTGG+CGG | + | chr1_1:70256008-70256027 | None:intergenic | 45.0% |
| ! | ACGAGTGACTCTCTTGGTTT+TGG | + | chr1_1:70256011-70256030 | None:intergenic | 45.0% |
| GCGTGTTGTGATTACTGGTA+TGG | - | chr1_1:70256087-70256106 | Msa0040180:three_prime_UTR | 45.0% | |
| TACTGGTATGGGTCTTGCTT+CGG | - | chr1_1:70256099-70256118 | Msa0040180:three_prime_UTR | 45.0% | |
| !! | AGCGAATCGAGTTGGGAATT+TGG | + | chr1_1:70256209-70256228 | None:intergenic | 45.0% |
| ! | AAATTCCCAACTCGATTCGC+TGG | - | chr1_1:70256208-70256227 | Msa0040180:intron | 45.0% |
| ! | ATCCGTGACTTCAGTTCTGA+GGG | - | chr1_1:70256235-70256254 | Msa0040180:intron | 45.0% |
| AACCCTCAGAACTGAAGTCA+CGG | + | chr1_1:70256240-70256259 | None:intergenic | 45.0% | |
| !! | AGTTCTGAGGGTTACATCGA+CGG | - | chr1_1:70256247-70256266 | Msa0040180:intron | 45.0% |
| GGAGACAATCATCAAGTCTC+CGG | + | chr1_1:70256282-70256301 | None:intergenic | 45.0% | |
| ! | GGAGACTTGATGATTGTCTC+CGG | - | chr1_1:70256281-70256300 | Msa0040180:intron | 45.0% |
| GTGTTCGAGTGCTTTCTTAC+CGG | + | chr1_1:70256320-70256339 | None:intergenic | 45.0% | |
| !! | CGGTGCTGCAAATCTATCTA+AGG | - | chr1_1:70256348-70256367 | Msa0040180:intron | 45.0% |
| CAGATTGATAAGGAACGTGC+TGG | - | chr1_1:70256460-70256479 | Msa0040180:intron | 45.0% | |
| !!! | CGTTTTGGTTGGATCAGGAA+TGG | - | chr1_1:70256483-70256502 | Msa0040180:intron | 45.0% |
| CTCACCTCTACGAATGTGAT+TGG | + | chr1_1:70256704-70256723 | None:intergenic | 45.0% | |
| CAATCACATTCGTAGAGGTG+AGG | - | chr1_1:70256702-70256721 | Msa0040180:intron | 45.0% | |
| !! | GAGGCTGATTTGATGATAGC+CGG | - | chr1_1:70256721-70256740 | Msa0040180:intron | 45.0% |
| ! | CTGATTTGATGATAGCCGGT+GGG | - | chr1_1:70256725-70256744 | Msa0040180:intron | 45.0% |
| GAGGCTGCGATTATTCCAAT+TGG | - | chr1_1:70256751-70256770 | Msa0040180:intron | 45.0% | |
| ACGAAACCACCCAAACCAAT+TGG | + | chr1_1:70256769-70256788 | None:intergenic | 45.0% | |
| ! | CAAGGCCTAGAAGCAGTTTT+AGG | + | chr1_1:70256826-70256845 | None:intergenic | 45.0% |
| CTAAAACTGCTTCTAGGCCT+TGG | - | chr1_1:70256824-70256843 | Msa0040180:intron | 45.0% | |
| CCATCACGTTCTTTATCCCA+AGG | + | chr1_1:70256844-70256863 | None:intergenic | 45.0% | |
| CCTTGGGATAAAGAACGTGA+TGG | - | chr1_1:70256841-70256860 | Msa0040180:intron | 45.0% | |
| !! | TGGGGGGTTGGTTAACAATA+TGG | - | chr1_1:70256972-70256991 | Msa0040180:intron | 45.0% |
| !! | GGGGGGTTGGTTAACAATAT+GGG | - | chr1_1:70256973-70256992 | Msa0040180:intron | 45.0% |
| !! | CGAGGGTACTATAACTTCAC+AGG | - | chr1_1:70257394-70257413 | Msa0040180:intron | 45.0% |
| !! | TTCACAGGTATTGGAAAGCC+TGG | - | chr1_1:70257409-70257428 | Msa0040180:intron | 45.0% |
| GAATGAAACAGTACCTCCTC+AGG | + | chr1_1:70257584-70257603 | None:intergenic | 45.0% | |
| TGTGGTATGAGAGGGACTAT+GGG | - | chr1_1:70258012-70258031 | Msa0040180:intron | 45.0% | |
| !!! | TCAGCCCAAGGCTTTTTTAG+AGG | + | chr1_1:70258135-70258154 | None:intergenic | 45.0% |
| GTGTTAGAGCTCCCAATTGT+GGG | - | chr1_1:70258296-70258315 | Msa0040180:intron | 45.0% | |
| ! | ATAGCTCTGCCTCTCGTAAA+AGG | - | chr1_1:70258357-70258376 | Msa0040180:intron | 45.0% |
| TTCCTGGGATAAGGGTTGAA+AGG | - | chr1_1:70258468-70258487 | Msa0040180:intron | 45.0% | |
| GGATAAGGGTTGAAAGGTGA+AGG | - | chr1_1:70258474-70258493 | Msa0040180:intron | 45.0% | |
| ! | CTCAGCTGAGTTGAGTTCTA+AGG | - | chr1_1:70258531-70258550 | Msa0040180:intron | 45.0% |
| CTACCATACAAGGCTGAAAC+AGG | + | chr1_1:70258598-70258617 | None:intergenic | 45.0% | |
| AACTGGACACATTTCCATGG+TGG | - | chr1_1:70258646-70258665 | Msa0040180:intron | 45.0% | |
| ATTAGCAATGCCTTCCACCA+TGG | + | chr1_1:70258663-70258682 | None:intergenic | 45.0% | |
| ACAGTTTCACCTTGTCCTTG+AGG | + | chr1_1:70258811-70258830 | None:intergenic | 45.0% | |
| GGAGTTGGATGATAAATGGG+AGG | - | chr1_1:70258975-70258994 | Msa0040180:intron | 45.0% | |
| TGGATGATAAATGGGAGGAG+AGG | - | chr1_1:70258980-70258999 | Msa0040180:intron | 45.0% | |
| GAGACGCTCTGTGAATGAAT+TGG | - | chr1_1:70259022-70259041 | Msa0040180:intron | 45.0% | |
| TCTGTGAATGAATTGGGACC+CGG | - | chr1_1:70259029-70259048 | Msa0040180:intron | 45.0% | |
| CTAATGAATGAGCGAGTAGC+TGG | + | chr1_1:70259250-70259269 | None:intergenic | 45.0% | |
| CAGCTACTCGCTCATTCATT+AGG | - | chr1_1:70259248-70259267 | Msa0040180:intron | 45.0% | |
| TATGGGGCTTAAGCTGCTAA+TGG | - | chr1_1:70259276-70259295 | Msa0040180:intron | 45.0% | |
| TTCCACTCTTGCTGGTGATT+TGG | - | chr1_1:70259469-70259488 | Msa0040180:CDS | 45.0% | |
| TGTTGTTATGGCTTTCACCG+TGG | + | chr1_1:70259731-70259750 | None:intergenic | 45.0% | |
| ACGGTGAAAGCCATAACAAC+AGG | - | chr1_1:70259730-70259749 | Msa0040180:intron | 45.0% | |
| ATGCAGCCATCCTGTTGTTA+TGG | + | chr1_1:70259743-70259762 | None:intergenic | 45.0% | |
| TAAATGCCCGAGCACTCATT+TGG | + | chr1_1:70259841-70259860 | None:intergenic | 45.0% | |
| AATGGAGAGGATCTTGACTC+AGG | + | chr1_1:70259890-70259909 | None:intergenic | 45.0% | |
| GGAGAAGGACATAAATGGAG+AGG | + | chr1_1:70259903-70259922 | None:intergenic | 45.0% | |
| TCATTGCTCGGTAATTGGGA+TGG | - | chr1_1:70260477-70260496 | Msa0040180:CDS | 45.0% | |
| GGATTCTACACTCAAGACCA+AGG | + | chr1_1:70260575-70260594 | None:intergenic | 45.0% | |
| ACATGAAGAGAAGACAAGCC+TGG | + | chr1_1:70260867-70260886 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | + | chr1_1:70260749-70260768 | None:intergenic | 5.0% |
| ! | TGACGGAGAGTACGAAGAAG+GGG | + | chr1_1:70255856-70255875 | None:intergenic | 50.0% |
| ! | CTGACGGAGAGTACGAAGAA+GGG | + | chr1_1:70255857-70255876 | None:intergenic | 50.0% |
| ! | ACTGACGGAGAGTACGAAGA+AGG | + | chr1_1:70255858-70255877 | None:intergenic | 50.0% |
| TTGGAGGATTTACGGCGAAG+TGG | + | chr1_1:70255971-70255990 | None:intergenic | 50.0% | |
| ! | TGGCGGCATTGGAGGATTTA+CGG | + | chr1_1:70255979-70255998 | None:intergenic | 50.0% |
| GGAGATACGAGTGACTCTCT+TGG | + | chr1_1:70256017-70256036 | None:intergenic | 50.0% | |
| ! | ATCCTTTTCTCTTTGCGGCG+CGG | + | chr1_1:70256059-70256078 | None:intergenic | 50.0% |
| !! | ATGGGTCTTGCTTCGGTGTT+TGG | - | chr1_1:70256106-70256125 | Msa0040180:three_prime_UTR | 50.0% |
| TCTGACCAGCGAATCGAGTT+GGG | + | chr1_1:70256216-70256235 | None:intergenic | 50.0% | |
| ATCTGACCAGCGAATCGAGT+TGG | + | chr1_1:70256217-70256236 | None:intergenic | 50.0% | |
| GATCCGTGACTTCAGTTCTG+AGG | - | chr1_1:70256234-70256253 | Msa0040180:intron | 50.0% | |
| !! | GTTCTGAGGGTTACATCGAC+GGG | - | chr1_1:70256248-70256267 | Msa0040180:intron | 50.0% |
| ACATCGACGGGAAGAATGAC+CGG | - | chr1_1:70256260-70256279 | Msa0040180:intron | 50.0% | |
| GCACTCGAACACGCTAATCT+CGG | - | chr1_1:70256328-70256347 | Msa0040180:intron | 50.0% | |
| !! | TAAGGAACGTGCTGGCGTTT+TGG | - | chr1_1:70256468-70256487 | Msa0040180:intron | 50.0% |
| TTGGTTGGATCAGGAATGGG+TGG | - | chr1_1:70256487-70256506 | Msa0040180:intron | 50.0% | |
| GCTGCCAATCACATTCGTAG+AGG | - | chr1_1:70256697-70256716 | Msa0040180:intron | 50.0% | |
| !! | GCTGATTTGATGATAGCCGG+TGG | - | chr1_1:70256724-70256743 | Msa0040180:intron | 50.0% |
| !!! | GGGAGAAGGTTCTGGAGTTT+TGG | - | chr1_1:70256873-70256892 | Msa0040180:intron | 50.0% |
| TATGGGCAGCTCAAGGGTTA+AGG | - | chr1_1:70256990-70257009 | Msa0040180:intron | 50.0% | |
| CAGCTCAAGGGTTAAGGTGT+TGG | - | chr1_1:70256996-70257015 | Msa0040180:intron | 50.0% | |
| !! | CTCAAGGGTTAAGGTGTTGG+AGG | - | chr1_1:70256999-70257018 | Msa0040180:intron | 50.0% |
| TGCACCGGGATCATGTACAA+AGG | + | chr1_1:70257211-70257230 | None:intergenic | 50.0% | |
| ACTAGATCTCCCGCATATGC+AGG | - | chr1_1:70257230-70257249 | Msa0040180:CDS | 50.0% | |
| TTCCTAGAGCCTGCATATGC+GGG | + | chr1_1:70257242-70257261 | None:intergenic | 50.0% | |
| CTTCCTAGAGCCTGCATATG+CGG | + | chr1_1:70257243-70257262 | None:intergenic | 50.0% | |
| !! | GCATATGCAGGCTCTAGGAA+GGG | - | chr1_1:70257242-70257261 | Msa0040180:CDS | 50.0% |
| !! | CATATGCAGGCTCTAGGAAG+GGG | - | chr1_1:70257243-70257262 | Msa0040180:CDS | 50.0% |
| AATAGGTGCACCTCGCTTCA+TGG | + | chr1_1:70257441-70257460 | None:intergenic | 50.0% | |
| !! | GATCCAAGATCTGACGGACT+TGG | - | chr1_1:70257512-70257531 | Msa0040180:CDS | 50.0% |
| AAACGTAGAGTCGGCCAGAA+AGG | + | chr1_1:70257712-70257731 | None:intergenic | 50.0% | |
| CGATACAATAGGGGATGACC+TGG | - | chr1_1:70257780-70257799 | Msa0040180:intron | 50.0% | |
| TGTTGGGGTGTGGTATGAGA+GGG | - | chr1_1:70258004-70258023 | Msa0040180:intron | 50.0% | |
| GTGTGGTATGAGAGGGACTA+TGG | - | chr1_1:70258011-70258030 | Msa0040180:intron | 50.0% | |
| TATGAGAGGGACTATGGGTC+TGG | - | chr1_1:70258017-70258036 | Msa0040180:intron | 50.0% | |
| ! | TTGGGAGCTCTAACACCAGT+TGG | + | chr1_1:70258292-70258311 | None:intergenic | 50.0% |
| GGTGTTAGAGCTCCCAATTG+TGG | - | chr1_1:70258295-70258314 | Msa0040180:intron | 50.0% | |
| CGTTTGCAGCTCCCACAATT+GGG | + | chr1_1:70258310-70258329 | None:intergenic | 50.0% | |
| TCGTTTGCAGCTCCCACAAT+TGG | + | chr1_1:70258311-70258330 | None:intergenic | 50.0% | |
| CACCTTTCAACCCTTATCCC+AGG | + | chr1_1:70258473-70258492 | None:intergenic | 50.0% | |
| ! | GGACACATTTCCATGGTGGA+AGG | - | chr1_1:70258650-70258669 | Msa0040180:intron | 50.0% |
| ACAATTGCTTGCACGCAGCA+GGG | - | chr1_1:70258921-70258940 | Msa0040180:intron | 50.0% | |
| GGGAGGAGAGGAAAGAGAAA+AGG | - | chr1_1:70258992-70259011 | Msa0040180:intron | 50.0% | |
| CTGTGAATGAATTGGGACCC+GGG | - | chr1_1:70259030-70259049 | Msa0040180:intron | 50.0% | |
| ACAAGGAATTTGGTAGGCCC+GGG | + | chr1_1:70259050-70259069 | None:intergenic | 50.0% | |
| CACAAGGAATTTGGTAGGCC+CGG | + | chr1_1:70259051-70259070 | None:intergenic | 50.0% | |
| CATGCAACTTCCACTCTTGC+TGG | - | chr1_1:70259461-70259480 | Msa0040180:CDS | 50.0% | |
| ! | CACTCTTGCTGGTGATTTGG+CGG | - | chr1_1:70259472-70259491 | Msa0040180:CDS | 50.0% |
| ! | CGGTTTGGAAGCTATTGCCA+CGG | - | chr1_1:70259711-70259730 | Msa0040180:intron | 50.0% |
| TGTGGGTCCTACCACTAAGT+GGG | + | chr1_1:70259997-70260016 | None:intergenic | 50.0% | |
| ATGTGGGTCCTACCACTAAG+TGG | + | chr1_1:70259998-70260017 | None:intergenic | 50.0% | |
| !! | TCGTGGCTTTTTCCGCTTTC+AGG | - | chr1_1:70260832-70260851 | Msa0040180:CDS | 50.0% |
| GAAGACAAGCCTGGCAATCA+GGG | + | chr1_1:70260858-70260877 | None:intergenic | 50.0% | |
| AGAAGACAAGCCTGGCAATC+AGG | + | chr1_1:70260859-70260878 | None:intergenic | 50.0% | |
| TTACGGCGAAGTGGTTCGAG+CGG | + | chr1_1:70255962-70255981 | None:intergenic | 55.0% | |
| !!! | GACTCTCTTGGTTTTGGCGG+CGG | + | chr1_1:70256005-70256024 | None:intergenic | 55.0% |
| AAGCTTCTCGCTGGTGAGAG+TGG | - | chr1_1:70256154-70256173 | Msa0040180:CDS | 55.0% | |
| TACCGGCGACAATGCAGTAC+CGG | + | chr1_1:70256303-70256322 | None:intergenic | 55.0% | |
| !! | GAACGTGCTGGCGTTTTGGT+TGG | - | chr1_1:70256472-70256491 | Msa0040180:intron | 55.0% |
| !!! | GCTGGCGTTTTGGTTGGATC+AGG | - | chr1_1:70256478-70256497 | Msa0040180:intron | 55.0% |
| TGGGTGGTTTCGTTGCTTGC+AGG | - | chr1_1:70256776-70256795 | Msa0040180:intron | 55.0% | |
| GGGTGGTTTCGTTGCTTGCA+GGG | - | chr1_1:70256777-70256796 | Msa0040180:intron | 55.0% | |
| ATGCGGGAGATCTAGTGCAC+CGG | + | chr1_1:70257226-70257245 | None:intergenic | 55.0% | |
| !! | CGCATATGCAGGCTCTAGGA+AGG | - | chr1_1:70257241-70257260 | Msa0040180:CDS | 55.0% |
| CTCGCTTCATGGCATGTTCC+AGG | + | chr1_1:70257430-70257449 | None:intergenic | 55.0% | |
| CTGGAACATGCCATGAAGCG+AGG | - | chr1_1:70257428-70257447 | Msa0040180:intron | 55.0% | |
| ACGCCAAGTCCGTCAGATCT+TGG | + | chr1_1:70257518-70257537 | None:intergenic | 55.0% | |
| CAGAGCAGCCTTGAAGATGC+CGG | - | chr1_1:70257551-70257570 | Msa0040180:intron | 55.0% | |
| GAGACACACCGGCATCTTCA+AGG | + | chr1_1:70257562-70257581 | None:intergenic | 55.0% | |
| TACCTCCTCAGGAGACACAC+CGG | + | chr1_1:70257573-70257592 | None:intergenic | 55.0% | |
| TGTGAAGCGGTCTGCACACA+TGG | - | chr1_1:70257981-70258000 | Msa0040180:intron | 55.0% | |
| CGGTCTGCACACATGGTGTT+GGG | - | chr1_1:70257988-70258007 | Msa0040180:intron | 55.0% | |
| ! | GGTCTGCACACATGGTGTTG+GGG | - | chr1_1:70257989-70258008 | Msa0040180:intron | 55.0% |
| GTGTTGGGGTGTGGTATGAG+AGG | - | chr1_1:70258003-70258022 | Msa0040180:intron | 55.0% | |
| CACAATTGCTTGCACGCAGC+AGG | - | chr1_1:70258920-70258939 | Msa0040180:intron | 55.0% | |
| CAATTGCTTGCACGCAGCAG+GGG | - | chr1_1:70258922-70258941 | Msa0040180:intron | 55.0% | |
| AATTGCTTGCACGCAGCAGG+GGG | - | chr1_1:70258923-70258942 | Msa0040180:intron | 55.0% | |
| CGCCAAATCACCAGCAAGAG+TGG | + | chr1_1:70259474-70259493 | None:intergenic | 55.0% | |
| ! | TGGTGGACACAACTCTGTCG+TGG | - | chr1_1:70260815-70260834 | Msa0040180:CDS | 55.0% |
| TGGCAATCAGGGCCTGAAAG+CGG | + | chr1_1:70260847-70260866 | None:intergenic | 55.0% | |
| GGTGAAGGACGGAGAGTGGA+GGG | + | chr1_1:70255941-70255960 | None:intergenic | 60.0% | |
| GTGGTTCGAGCGGTGAAGGA+CGG | + | chr1_1:70255952-70255971 | None:intergenic | 60.0% | |
| CGAAGTGGTTCGAGCGGTGA+AGG | + | chr1_1:70255956-70255975 | None:intergenic | 60.0% | |
| !!! | TCTCTTGGTTTTGGCGGCGG+AGG | + | chr1_1:70256002-70256021 | None:intergenic | 60.0% |
| AGTCACTCGTATCTCCGCCG+CGG | - | chr1_1:70256021-70256040 | Msa0040180:three_prime_UTR | 60.0% | |
| ! | CTTTTCTCTTTGCGGCGCGG+TGG | + | chr1_1:70256056-70256075 | None:intergenic | 60.0% |
| CACCGCGCCGCAAAGAGAAA+AGG | - | chr1_1:70256054-70256073 | Msa0040180:three_prime_UTR | 60.0% | |
| CTCCGGTACTGCATTGTCGC+CGG | - | chr1_1:70256298-70256317 | Msa0040180:intron | 60.0% | |
| GATGATAGCCGGTGGGACTG+AGG | - | chr1_1:70256732-70256751 | Msa0040180:intron | 60.0% | |
| AATCGCAGCCTCAGTCCCAC+CGG | + | chr1_1:70256743-70256762 | None:intergenic | 60.0% | |
| TGCGGGAGATCTAGTGCACC+GGG | + | chr1_1:70257225-70257244 | None:intergenic | 60.0% | |
| CTCCCGCATATGCAGGCTCT+AGG | - | chr1_1:70257237-70257256 | Msa0040180:CDS | 60.0% | |
| CGGCATCTTCAAGGCTGCTC+TGG | + | chr1_1:70257553-70257572 | None:intergenic | 60.0% | |
| AGATGCCGGTGTGTCTCCTG+AGG | - | chr1_1:70257565-70257584 | Msa0040180:intron | 60.0% | |
| GCGGTCTGCACACATGGTGT+TGG | - | chr1_1:70257987-70258006 | Msa0040180:intron | 60.0% | |
| ! | GCACACATGGTGTTGGGGTG+TGG | - | chr1_1:70257994-70258013 | Msa0040180:intron | 60.0% |
| ! | GGTCACTGTCTTGGTGCAGC+TGG | - | chr1_1:70259688-70259707 | Msa0040180:intron | 60.0% |
| ! | CACTGTCTTGGTGCAGCTGG+CGG | - | chr1_1:70259691-70259710 | Msa0040180:intron | 60.0% |
| ! | TCTTGGTGCAGCTGGCGGTT+TGG | - | chr1_1:70259696-70259715 | Msa0040180:intron | 60.0% |
| CGATCGTGGGACCCACTTAG+TGG | - | chr1_1:70259983-70260002 | Msa0040180:intron | 60.0% | |
| CGTGGGACCCACTTAGTGGT+AGG | - | chr1_1:70259987-70260006 | Msa0040180:intron | 60.0% | |
| GCTTTCAGGCCCTGATTGCC+AGG | - | chr1_1:70260846-70260865 | Msa0040180:CDS | 60.0% | |
| CGGTGAAGGACGGAGAGTGG+AGG | + | chr1_1:70255942-70255961 | None:intergenic | 65.0% | |
| GAGCGGTGAAGGACGGAGAG+TGG | + | chr1_1:70255945-70255964 | None:intergenic | 65.0% | |
| !!! | CTTGGTTTTGGCGGCGGAGG+TGG | + | chr1_1:70255999-70256018 | None:intergenic | 65.0% |
| TTCTCTTTGCGGCGCGGTGG+TGG | + | chr1_1:70256053-70256072 | None:intergenic | 65.0% | |
| TGCCGGTGTGTCTCCTGAGG+AGG | - | chr1_1:70257568-70257587 | Msa0040180:intron | 65.0% | |
| ! | TTGCACGCAGCAGGGGGTGT+GGG | - | chr1_1:70258929-70258948 | Msa0040180:intron | 65.0% |
| ! | CAGCAGGGGGTGTGGGGAAA+GGG | - | chr1_1:70258936-70258955 | Msa0040180:intron | 65.0% |
| !! | GGTTTTGGCGGCGGAGGTGG+CGG | + | chr1_1:70255996-70256015 | None:intergenic | 70.0% |
| ! | TCTTTGCGGCGCGGTGGTGG+TGG | + | chr1_1:70256050-70256069 | None:intergenic | 70.0% |
| CTTGCACGCAGCAGGGGGTG+TGG | - | chr1_1:70258928-70258947 | Msa0040180:intron | 70.0% | |
| ! | TGCACGCAGCAGGGGGTGTG+GGG | - | chr1_1:70258930-70258949 | Msa0040180:intron | 70.0% |
| ! | GCAGCAGGGGGTGTGGGGAA+AGG | - | chr1_1:70258935-70258954 | Msa0040180:intron | 70.0% |
| ! | GGCGGAGGTGGCGGCATTGG+AGG | + | chr1_1:70255987-70256006 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGTGACCGCGG+CGG | + | chr1_1:70256038-70256057 | None:intergenic | 75.0% |
| !! | CGCGGTGGTGGTGGTGACCG+CGG | + | chr1_1:70256041-70256060 | None:intergenic | 75.0% |
| !! | GGCGGCGGAGGTGGCGGCAT+TGG | + | chr1_1:70255990-70256009 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70255730 | 70261279 | 70255730 | ID=Msa0040180;Name=Msa0040180 |
| chr1_1 | mRNA | 70255730 | 70261279 | 70255730 | ID=Msa0040180-mRNA-1;Parent=Msa0040180;Name=Msa0040180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=178|1|1|1|1|1|7|419|472 |
| chr1_1 | exon | 70255730 | 70256216 | 70255730 | ID=Msa0040180-mRNA-1:exon:23098;Parent=Msa0040180-mRNA-1 |
| chr1_1 | exon | 70256353 | 70256419 | 70256353 | ID=Msa0040180-mRNA-1:exon:23097;Parent=Msa0040180-mRNA-1 |
| chr1_1 | exon | 70257229 | 70257330 | 70257229 | ID=Msa0040180-mRNA-1:exon:23096;Parent=Msa0040180-mRNA-1 |
| chr1_1 | exon | 70257453 | 70257566 | 70257453 | ID=Msa0040180-mRNA-1:exon:23095;Parent=Msa0040180-mRNA-1 |
| chr1_1 | exon | 70259420 | 70259593 | 70259420 | ID=Msa0040180-mRNA-1:exon:23094;Parent=Msa0040180-mRNA-1 |
| chr1_1 | exon | 70260115 | 70260546 | 70260115 | ID=Msa0040180-mRNA-1:exon:23093;Parent=Msa0040180-mRNA-1 |
| chr1_1 | exon | 70260640 | 70261279 | 70260640 | ID=Msa0040180-mRNA-1:exon:23092;Parent=Msa0040180-mRNA-1 |
| chr1_1 | five_prime_UTR | 70261102 | 70261279 | 70261102 | ID=Msa0040180-mRNA-1:five_prime_utr;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70260640 | 70261101 | 70260640 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70260115 | 70260546 | 70260115 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70259420 | 70259593 | 70259420 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70257453 | 70257566 | 70257453 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70257229 | 70257330 | 70257229 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70256353 | 70256419 | 70256353 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | CDS | 70256149 | 70256216 | 70256149 | ID=Msa0040180-mRNA-1:cds;Parent=Msa0040180-mRNA-1 |
| chr1_1 | three_prime_UTR | 70255730 | 70256148 | 70255730 | ID=Msa0040180-mRNA-1:three_prime_utr;Parent=Msa0040180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
