Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464050 | XP_039687546.1 | 91.429 | 350 | 29 | 1 | 4 | 353 | 23 | 371 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464050 | sp|Q5XV40|LAZY1_ARATH | 33.913 | 345 | 184 | 13 | 23 | 353 | 44 | 358 | 1.38e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464050 | G7JC25 | 91.429 | 350 | 29 | 1 | 4 | 353 | 23 | 371 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1227640 | Msa1464050 | 0.806163 | 9.401738e-50 | -8.615850e-47 |
| Msa0468590 | Msa1464050 | 0.801989 | 6.940608e-49 | -8.615850e-47 |
| Msa0514470 | Msa1464050 | 0.846686 | 1.858243e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464050 | MtrunA17_Chr3g0122881 | 91.429 | 350 | 29 | 1 | 4 | 353 | 23 | 371 | 0.0 | 639 |
| Msa1464050 | MtrunA17_Chr7g0222391 | 42.748 | 393 | 143 | 19 | 3 | 353 | 31 | 383 | 1.14e-70 | 225 |
| Msa1464050 | MtrunA17_Chr7g0224731 | 38.387 | 310 | 145 | 11 | 56 | 353 | 67 | 342 | 2.91e-43 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464050 | AT5G14090.1 | 33.913 | 345 | 184 | 13 | 23 | 353 | 44 | 358 | 1.41e-31 | 122 |
| Msa1464050 | AT5G14090.2 | 40.116 | 172 | 77 | 9 | 66 | 226 | 87 | 243 | 3.96e-18 | 84.0 |
Find 98 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAATAAGATTCGGTTTA+TGG | 0.065232 | tig0043867:+3793 | Msa1464050:three_prime_UTR |
| TAATATTTGTGTTGCGTTTC+AGG | 0.118262 | tig0043867:+189 | None:intergenic |
| GAGATGCATGGCAGATTTAT+TGG | 0.247230 | tig0043867:-859 | Msa1464050:intergenic |
| CTTATTCTTTGACACTGATA+TGG | 0.261165 | tig0043867:-718 | Msa1464050:intergenic |
| CCACTTCAGGGATATCTCTT+TGG | 0.265174 | tig0043867:+660 | Msa1464050:CDS |
| TGCCACCGCCAAGGATAATT+TGG | 0.268052 | tig0043867:-1518 | Msa1464050:intergenic |
| CATATCAGTGTCAAAGAATA+AGG | 0.288207 | tig0043867:+719 | Msa1464050:CDS |
| AGGCAAAGGGCGAACGGAAT+TGG | 0.300171 | tig0043867:+3503 | Msa1464050:three_prime_UTR |
| AAGACTATGCAATGCAATAA+TGG | 0.301066 | tig0043867:+3575 | Msa1464050:three_prime_UTR |
| TGAAGATTCATCTGAGAATA+TGG | 0.319257 | tig0043867:+1542 | Msa1464050:CDS |
| CTTAGTGTTGGAGCTCTAAA+AGG | 0.331716 | tig0043867:+3483 | Msa1464050:exon |
| GTTAAGAGTCTGTCCGGATA+TGG | 0.336650 | tig0043867:+3689 | Msa1464050:three_prime_UTR |
| TTCTCTCTGCGGTGCTTACA+TGG | 0.339766 | tig0043867:-596 | Msa1464050:intergenic |
| TGTCTTTAGTTAATTATTTG+AGG | 0.346140 | tig0043867:+3651 | Msa1464050:three_prime_UTR |
| AGACAGAAAACTGCATAATA+AGG | 0.354735 | tig0043867:+953 | Msa1464050:CDS |
| GGATGATACTGACAATAAAA+AGG | 0.366676 | tig0043867:+830 | Msa1464050:CDS |
| AAACTCCATTTGTCCACTTC+AGG | 0.368249 | tig0043867:+647 | Msa1464050:CDS |
| TTCCTAGCAATTGGAACTCT+TGG | 0.378228 | tig0043867:+402 | Msa1464050:CDS |
| AGCAATTGGAACTCTTGGTT+TGG | 0.393170 | tig0043867:+407 | Msa1464050:CDS |
| CACTATCTGAAACCGAACTT+TGG | 0.396952 | tig0043867:+249 | Msa1464050:CDS |
| GATCAGCTTCAGCTCATTCT+CGG | 0.397412 | tig0043867:-508 | Msa1464050:intergenic |
| AGATGAATCATCATTGTTGT+TGG | 0.399875 | tig0043867:-562 | Msa1464050:intergenic |
| TTCCCCGGCTTCCTAGCAAT+TGG | 0.406570 | tig0043867:+393 | Msa1464050:CDS |
| GGCAAAGGGCGAACGGAATT+GGG | 0.408082 | tig0043867:+3504 | Msa1464050:three_prime_UTR |
| GAGAAGCAAACAAGCAGATC+AGG | 0.413070 | tig0043867:+788 | Msa1464050:CDS |
| GAACTTTCCGGTGAAACATC+TGG | 0.414604 | tig0043867:-1335 | Msa1464050:intergenic |
| GAAATAATTAAAATAAGATT+CGG | 0.418911 | tig0043867:+3786 | Msa1464050:three_prime_UTR |
| AAGTTGAATCAACAGAGGTC+TGG | 0.422480 | tig0043867:-926 | Msa1464050:intergenic |
| TGGAACTCTTGGTTTGGAAT+CGG | 0.430619 | tig0043867:+413 | Msa1464050:CDS |
| ATGTATAATGTTCAAGAGTA+AGG | 0.431130 | tig0043867:+3828 | Msa1464050:three_prime_UTR |
| ACTATCTGAAACCGAACTTT+GGG | 0.435339 | tig0043867:+250 | Msa1464050:CDS |
| AGACTATGCAATGCAATAAT+GGG | 0.436065 | tig0043867:+3576 | Msa1464050:three_prime_UTR |
| AATATTTGTGTTGCGTTTCA+GGG | 0.446892 | tig0043867:+190 | None:intergenic |
| GCAGATCAGGACAATCTTGT+TGG | 0.449301 | tig0043867:+801 | Msa1464050:CDS |
| AACTCCATTTGTCCACTTCA+GGG | 0.453747 | tig0043867:+648 | Msa1464050:CDS |
| GAAGAAGAAAAGAATGAATG+AGG | 0.455837 | tig0043867:+1392 | Msa1464050:CDS |
| GCTCACCCAGTGTTGTTCTC+TGG | 0.456925 | tig0043867:-758 | Msa1464050:intergenic |
| AATGATGGTGTTAGTGGTGA+TGG | 0.457780 | tig0043867:-438 | Msa1464050:intergenic |
| GTTCCAATTGCTAGGAAGCC+GGG | 0.462497 | tig0043867:-396 | Msa1464050:intergenic |
| AGAAAATCTTTCGAAGCAGT+TGG | 0.467282 | tig0043867:+318 | Msa1464050:CDS |
| TGAGAATATAATAACTGAAA+AGG | 0.468108 | tig0043867:+473 | Msa1464050:CDS |
| GAAAATCTTTCGAAGCAGTT+GGG | 0.473047 | tig0043867:+319 | Msa1464050:CDS |
| TTTGTGTTGCGTTTCAGGGC+AGG | 0.477270 | tig0043867:+194 | None:intergenic |
| ATGGAAAATGATGGTGTTAG+TGG | 0.481586 | tig0043867:-444 | Msa1464050:intergenic |
| CTTTCAGTTCTATACACTCT+GGG | 0.487957 | tig0043867:+3889 | Msa1464050:three_prime_UTR |
| TAAGCAAGTGAATGTAAAGA+AGG | 0.489282 | tig0043867:+3764 | Msa1464050:three_prime_UTR |
| AACAACAATGATGATTCATC+TGG | 0.492797 | tig0043867:+564 | Msa1464050:CDS |
| ATATCCCTGAAGTGGACAAA+TGG | 0.494244 | tig0043867:-652 | Msa1464050:intergenic |
| AACTAAAGACACAAAACATA+AGG | 0.499571 | tig0043867:-3639 | Msa1464050:intergenic |
| TCATATTAATTTGATGCTCG+TGG | 0.500786 | tig0043867:-3533 | Msa1464050:intergenic |
| AGTTGAATCAACAGAGGTCT+GGG | 0.504381 | tig0043867:-925 | Msa1464050:intergenic |
| AAGAGTGTTAAGAGTCTGTC+CGG | 0.508459 | tig0043867:+3683 | Msa1464050:three_prime_UTR |
| TTAAATTGCAGACTTAGTGT+TGG | 0.509625 | tig0043867:+3471 | Msa1464050:intron |
| CATCCTTGTGAAACCATATC+CGG | 0.509628 | tig0043867:-3702 | Msa1464050:intergenic |
| ACTTTCAGTTCTATACACTC+TGG | 0.510602 | tig0043867:+3888 | Msa1464050:three_prime_UTR |
| GGAAGAAGATAAGGAGGCAT+GGG | 0.511093 | tig0043867:+362 | Msa1464050:CDS |
| AAGAAGAAAAGAATGAATGA+GGG | 0.517369 | tig0043867:+1393 | Msa1464050:CDS |
| AGTAGACGAGGAAGAAGATA+AGG | 0.519096 | tig0043867:+353 | Msa1464050:CDS |
| AGTTCCAATTGCTAGGAAGC+CGG | 0.522924 | tig0043867:-397 | Msa1464050:intergenic |
| CAAAAGTAACAAAGTTGAAG+AGG | 0.524580 | tig0043867:+1425 | Msa1464050:CDS |
| TATGAAAGATATGATCGTCA+TGG | 0.538059 | tig0043867:+3551 | Msa1464050:three_prime_UTR |
| AGGCAACTCCAAATTATCCT+TGG | 0.540032 | tig0043867:+1510 | Msa1464050:CDS |
| TATTATATTCTCAACAGAGA+TGG | 0.542260 | tig0043867:-463 | Msa1464050:intergenic |
| CAACTCCAAATTATCCTTGG+CGG | 0.542924 | tig0043867:+1513 | Msa1464050:CDS |
| GGACAATCTTGTTGGAGCAA+AGG | 0.550435 | tig0043867:+809 | Msa1464050:CDS |
| TCTTTCGAAGCAGTTGGGAG+TGG | 0.552062 | tig0043867:+324 | Msa1464050:CDS |
| AGATTCTCCAGATGTTTCAC+CGG | 0.556872 | tig0043867:+1328 | Msa1464050:intron |
| TCGTACTTCTCTGCACATGT+TGG | 0.562643 | tig0043867:-1369 | Msa1464050:intergenic |
| CTCCAAATTATCCTTGGCGG+TGG | 0.566315 | tig0043867:+1516 | Msa1464050:CDS |
| ATGAAAGATATGATCGTCAT+GGG | 0.567897 | tig0043867:+3552 | Msa1464050:three_prime_UTR |
| AGGAAGAAGATAAGGAGGCA+TGG | 0.571385 | tig0043867:+361 | Msa1464050:CDS |
| CCAAAGAGATATCCCTGAAG+TGG | 0.575875 | tig0043867:-660 | Msa1464050:intergenic |
| GAAGATAAGGAGGCATGGGG+TGG | 0.581558 | tig0043867:+366 | Msa1464050:CDS |
| TCAACAGAGATGGAAAATGA+TGG | 0.585903 | tig0043867:-453 | Msa1464050:intergenic |
| TTGGAGCTCTAAAAGGCAAA+GGG | 0.588657 | tig0043867:+3490 | Msa1464050:exon |
| TCTAAAAGGCAAAGGGCGAA+CGG | 0.593553 | tig0043867:+3497 | Msa1464050:exon |
| GCAGTTGGAAAGGAAAACAT+AGG | 0.595191 | tig0043867:+1474 | Msa1464050:CDS |
| CACAGCCAGAGAACAACACT+GGG | 0.596125 | tig0043867:+753 | Msa1464050:CDS |
| GTTGGAGCTCTAAAAGGCAA+AGG | 0.599355 | tig0043867:+3489 | Msa1464050:exon |
| AATCTTCACTGCCACCGCCA+AGG | 0.599549 | tig0043867:-1527 | Msa1464050:intergenic |
| ACACAGCCAGAGAACAACAC+TGG | 0.600693 | tig0043867:+752 | Msa1464050:CDS |
| AGACGAGGAAGAAGATAAGG+AGG | 0.605480 | tig0043867:+356 | Msa1464050:CDS |
| CTGAAACCGAACTTTGGGAG+CGG | 0.608233 | tig0043867:+255 | Msa1464050:CDS |
| CATCTGAGAATATGGAGCAG+TGG | 0.617126 | tig0043867:+1550 | Msa1464050:CDS |
| GCAGGCAACATCAGTTGATG+AGG | 0.617201 | tig0043867:+212 | Msa1464050:CDS |
| AACCAAGAGTTCCAATTGCT+AGG | 0.618323 | tig0043867:-404 | Msa1464050:intergenic |
| TTCCAATTGCTAGGAAGCCG+GGG | 0.628342 | tig0043867:-395 | Msa1464050:intergenic |
| GCAGTGGATCAAAACAGATG+TGG | 0.633740 | tig0043867:+1566 | Msa1464050:CDS |
| ACATAGGACAGTGCAAGAAG+AGG | 0.639282 | tig0043867:+1490 | Msa1464050:CDS |
| TGTTTCTGATAATTCAACTG+CGG | 0.657633 | tig0043867:-685 | Msa1464050:intergenic |
| GAGTGGTAGAGCAGTAGACG+AGG | 0.660218 | tig0043867:+341 | Msa1464050:CDS |
| TCCATGACTATTTCTCTCTG+CGG | 0.668096 | tig0043867:-607 | Msa1464050:intergenic |
| AAGAAAAGAATGAATGAGGG+AGG | 0.670784 | tig0043867:+1396 | Msa1464050:CDS |
| TGCTGAAGTTGAATCAACAG+AGG | 0.671518 | tig0043867:-931 | Msa1464050:intergenic |
| TGTCCGGATATGGTTTCACA+AGG | 0.673692 | tig0043867:+3699 | Msa1464050:three_prime_UTR |
| ACCGCAGAGAGAAATAGTCA+TGG | 0.693609 | tig0043867:+606 | Msa1464050:CDS |
| GAAGAAGATAAGGAGGCATG+GGG | 0.707091 | tig0043867:+363 | Msa1464050:CDS |
| TCAAGAGTAAGGTATATACG+TGG | 0.769023 | tig0043867:+3839 | Msa1464050:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATTATTAAAAAAA+AGG | + | tig0043867:2580-2599 | Msa1464050:intron | 0.0% |
| !!! | TATAATTTTCAGATTTTTTT+CGG | - | tig0043867:2921-2940 | Msa1464050:intergenic | 10.0% |
| !!! | AAATTTATTTTCAGATTTTT+CGG | - | tig0043867:2962-2981 | Msa1464050:intergenic | 10.0% |
| !! | AAATACAAAAAAAAAAAAAC+TGG | + | tig0043867:2610-2629 | Msa1464050:intron | 10.0% |
| !! | AATACAAAAAAAAAAAAACT+GGG | + | tig0043867:2611-2630 | Msa1464050:intron | 10.0% |
| !!! | AAATTTATTTTCAGATTTTT+CGG | + | tig0043867:2962-2981 | Msa1464050:intron | 10.0% |
| !! | AAAAAATCATAAAAAATTAC+CGG | - | tig0043867:3015-3034 | Msa1464050:intergenic | 10.0% |
| !! | GAAATAATTAAAATAAGATT+CGG | + | tig0043867:3786-3805 | Msa1464050:three_prime_UTR | 10.0% |
| !! | AATACTAATTGGAAATAAAA+AGG | - | tig0043867:1256-1275 | Msa1464050:intergenic | 15.0% |
| !! | TTCCAATTAGTATTTATTTA+AGG | + | tig0043867:1262-1281 | Msa1464050:intron | 15.0% |
| !! | TAACTATATTAATTAATCTG+TGG | + | tig0043867:1300-1319 | Msa1464050:intron | 15.0% |
| !! | AACTATATTAATTAATCTGT+GGG | + | tig0043867:1301-1320 | Msa1464050:intron | 15.0% |
| !!! | TTCTGAATTTTTATTTTACA+AGG | - | tig0043867:3286-3305 | Msa1464050:intergenic | 15.0% |
| !! | ATACAAAAAAAAAAAAACTG+GGG | + | tig0043867:2612-2631 | Msa1464050:intron | 15.0% |
| !!! | TATAATTTTCAGATTTTTTC+CGG | + | tig0043867:2993-3012 | Msa1464050:intron | 15.0% |
| !!! | TTCTGAATTTTTATTTTACA+AGG | + | tig0043867:3286-3305 | Msa1464050:intron | 15.0% |
| !! | TGAGAATATAATAACTGAAA+AGG | + | tig0043867:473-492 | Msa1464050:CDS | 20.0% |
| !! | TTGATTAATCTTTATAAGAG+TGG | + | tig0043867:1109-1128 | Msa1464050:intron | 20.0% |
| !! | TAATTGTATAGAAAGTTGTT+GGG | + | tig0043867:1154-1173 | Msa1464050:intron | 20.0% |
| !! | GACCTTAAATAAATACTAAT+TGG | - | tig0043867:1267-1286 | Msa1464050:intergenic | 20.0% |
| !!! | TTTCAAATGTGTTTTAGTTA+AGG | + | tig0043867:1646-1665 | Msa1464050:intron | 20.0% |
| !! | TTAAGGCTTAAATATTACAT+TGG | + | tig0043867:1663-1682 | Msa1464050:intron | 20.0% |
| !!! | AAAATACATTTTCCAAAATC+TGG | - | tig0043867:2318-2337 | Msa1464050:intergenic | 20.0% |
| !! | TACAAAAAAAAAAAAACTGG+GGG | + | tig0043867:2613-2632 | Msa1464050:intron | 20.0% |
| !! | TTCTTTCATCAATTAACTAA+AGG | - | tig0043867:3361-3380 | Msa1464050:intergenic | 20.0% |
| !! | TGTCTTTAGTTAATTATTTG+AGG | + | tig0043867:3651-3670 | Msa1464050:three_prime_UTR | 20.0% |
| !!! | TTAAAATAAGATTCGGTTTA+TGG | + | tig0043867:3793-3812 | Msa1464050:three_prime_UTR | 20.0% |
| ! | TATTATATTCTCAACAGAGA+TGG | - | tig0043867:466-485 | Msa1464050:intergenic | 25.0% |
| ! | GAAAAAAGCTCAAGAAAAAA+AGG | + | tig0043867:886-905 | Msa1464050:CDS | 25.0% |
| ! | ATTAATCTTTATAAGAGTGG+TGG | + | tig0043867:1112-1131 | Msa1464050:intron | 25.0% |
| ! | GTAATTGTATAGAAAGTTGT+TGG | + | tig0043867:1153-1172 | Msa1464050:intron | 25.0% |
| ! | AATTGTATAGAAAGTTGTTG+GGG | + | tig0043867:1155-1174 | Msa1464050:intron | 25.0% |
| ! | ATATAGTTAGCTAAAGTCTA+GGG | - | tig0043867:1289-1308 | Msa1464050:intergenic | 25.0% |
| ! | AATATAGTTAGCTAAAGTCT+AGG | - | tig0043867:1290-1309 | Msa1464050:intergenic | 25.0% |
| ! | AAGAAGAAAAGAATGAATGA+GGG | + | tig0043867:1393-1412 | Msa1464050:CDS | 25.0% |
| !! | AAAAGACAGAAAATTTTGCA+GGG | - | tig0043867:3257-3276 | Msa1464050:intergenic | 25.0% |
| !! | TAAAAGACAGAAAATTTTGC+AGG | - | tig0043867:3256-3275 | Msa1464050:intergenic | 25.0% |
| ! | CAAAATCTGGAAAAAAATTC+AGG | - | tig0043867:2305-2324 | Msa1464050:intergenic | 25.0% |
| !!! | CTGAATTTTTTTCCAGATTT+TGG | + | tig0043867:2303-2322 | Msa1464050:intron | 25.0% |
| ! | ACAAAAAAAAAAAAACTGGG+GGG | + | tig0043867:2614-2633 | Msa1464050:intron | 25.0% |
| ! | CAAAAAAATCAAAACAACAC+TGG | + | tig0043867:2694-2713 | Msa1464050:intron | 25.0% |
| !! | AAAAGACAGAAAATTTTGCA+AGG | + | tig0043867:3257-3276 | Msa1464050:intron | 25.0% |
| !! | AAAGACAGAAAATTTTGCAA+GGG | + | tig0043867:3258-3277 | Msa1464050:intron | 25.0% |
| ! | TAAAGGCTTAAATATTGCAT+TGG | - | tig0043867:3344-3363 | Msa1464050:intergenic | 25.0% |
| ! | AACTAAAGACACAAAACATA+AGG | - | tig0043867:3642-3661 | Msa1464050:intergenic | 25.0% |
| ! | ATGTATAATGTTCAAGAGTA+AGG | + | tig0043867:3828-3847 | Msa1464050:three_prime_UTR | 25.0% |
| AGATGAATCATCATTGTTGT+TGG | - | tig0043867:565-584 | Msa1464050:intergenic | 30.0% | |
| AACAACAATGATGATTCATC+TGG | + | tig0043867:564-583 | Msa1464050:CDS | 30.0% | |
| ! | TGTTTCTGATAATTCAACTG+CGG | - | tig0043867:688-707 | Msa1464050:intergenic | 30.0% |
| CTTATTCTTTGACACTGATA+TGG | - | tig0043867:721-740 | Msa1464050:intergenic | 30.0% | |
| CATATCAGTGTCAAAGAATA+AGG | + | tig0043867:719-738 | Msa1464050:CDS | 30.0% | |
| GGATGATACTGACAATAAAA+AGG | + | tig0043867:830-849 | Msa1464050:CDS | 30.0% | |
| TGATACTGACAATAAAAAGG+AGG | + | tig0043867:833-852 | Msa1464050:CDS | 30.0% | |
| AGACAGAAAACTGCATAATA+AGG | + | tig0043867:953-972 | Msa1464050:CDS | 30.0% | |
| AAGAGAAAAATGATTCGCAT+CGG | + | tig0043867:1063-1082 | Msa1464050:intron | 30.0% | |
| ATTGTATAGAAAGTTGTTGG+GGG | + | tig0043867:1156-1175 | Msa1464050:intron | 30.0% | |
| GAAGAAGAAAAGAATGAATG+AGG | + | tig0043867:1392-1411 | Msa1464050:CDS | 30.0% | |
| !!! | CAACTTTGTTACTTTTGTTG+TGG | - | tig0043867:1422-1441 | Msa1464050:intergenic | 30.0% |
| CAAAAGTAACAAAGTTGAAG+AGG | + | tig0043867:1425-1444 | Msa1464050:CDS | 30.0% | |
| TGAAGATTCATCTGAGAATA+TGG | + | tig0043867:1542-1561 | Msa1464050:CDS | 30.0% | |
| !! | TGTCTTTTAAAAAAGTCCCT+GGG | + | tig0043867:1762-1781 | Msa1464050:intron | 30.0% |
| !!! | CTATTCCTTTTTTATGTCGT+TGG | - | tig0043867:2491-2510 | Msa1464050:intergenic | 30.0% |
| !!! | TTTTTTTGTATCACCCGATT+GGG | - | tig0043867:2682-2701 | Msa1464050:intergenic | 30.0% |
| !!! | ATTTTTTTGTATCACCCGAT+TGG | - | tig0043867:2683-2702 | Msa1464050:intergenic | 30.0% |
| AAAAATCAAAACAACACTGG+TGG | + | tig0043867:2697-2716 | Msa1464050:intron | 30.0% | |
| !! | TGTCTTTTAAAAATACCCCT+GGG | - | tig0043867:3245-3264 | Msa1464050:intergenic | 30.0% |
| TTAAATTGCAGACTTAGTGT+TGG | + | tig0043867:3471-3490 | Msa1464050:intron | 30.0% | |
| ! | TCATATTAATTTGATGCTCG+TGG | - | tig0043867:3536-3555 | Msa1464050:intergenic | 30.0% |
| TATGAAAGATATGATCGTCA+TGG | + | tig0043867:3551-3570 | Msa1464050:three_prime_UTR | 30.0% | |
| ATGAAAGATATGATCGTCAT+GGG | + | tig0043867:3552-3571 | Msa1464050:three_prime_UTR | 30.0% | |
| AAGACTATGCAATGCAATAA+TGG | + | tig0043867:3575-3594 | Msa1464050:three_prime_UTR | 30.0% | |
| AGACTATGCAATGCAATAAT+GGG | + | tig0043867:3576-3595 | Msa1464050:three_prime_UTR | 30.0% | |
| TAAGCAAGTGAATGTAAAGA+AGG | + | tig0043867:3764-3783 | Msa1464050:three_prime_UTR | 30.0% | |
| ! | ACTATCTGAAACCGAACTTT+GGG | + | tig0043867:250-269 | Msa1464050:CDS | 35.0% |
| AGAAAATCTTTCGAAGCAGT+TGG | + | tig0043867:318-337 | Msa1464050:CDS | 35.0% | |
| GAAAATCTTTCGAAGCAGTT+GGG | + | tig0043867:319-338 | Msa1464050:CDS | 35.0% | |
| ! | ATGGAAAATGATGGTGTTAG+TGG | - | tig0043867:447-466 | Msa1464050:intergenic | 35.0% |
| TCAACAGAGATGGAAAATGA+TGG | - | tig0043867:456-475 | Msa1464050:intergenic | 35.0% | |
| TACTGACAATAAAAAGGAGG+AGG | + | tig0043867:836-855 | Msa1464050:CDS | 35.0% | |
| !!! | CTTTTTTCTCATGAGATGCA+TGG | - | tig0043867:874-893 | Msa1464050:intergenic | 35.0% |
| AAGAAAAGAATGAATGAGGG+AGG | + | tig0043867:1396-1415 | Msa1464050:CDS | 35.0% | |
| !! | CTGTCTTTTAAAAAAGTCCC+TGG | + | tig0043867:1761-1780 | Msa1464050:intron | 35.0% |
| ! | TTTTTATGTCGTTGGACTCT+TGG | - | tig0043867:2483-2502 | Msa1464050:intergenic | 35.0% |
| AGAGTCCAACGACATAAAAA+AGG | + | tig0043867:2483-2502 | Msa1464050:intron | 35.0% | |
| ! | ACACTTTGTGTGGATTAACT+GGG | - | tig0043867:2652-2671 | Msa1464050:intergenic | 35.0% |
| ! | TACACTTTGTGTGGATTAAC+TGG | - | tig0043867:2653-2672 | Msa1464050:intergenic | 35.0% |
| !! | CTGTCTTTTAAAAATACCCC+TGG | - | tig0043867:3246-3265 | Msa1464050:intergenic | 35.0% |
| TCAAGAGTAAGGTATATACG+TGG | + | tig0043867:3839-3858 | Msa1464050:three_prime_UTR | 35.0% | |
| ACTTTCAGTTCTATACACTC+TGG | + | tig0043867:3888-3907 | Msa1464050:three_prime_UTR | 35.0% | |
| ! | CACTATCTGAAACCGAACTT+TGG | + | tig0043867:249-268 | Msa1464050:CDS | 40.0% |
| ! | TATTTTCCGCTCCCAAAGTT+CGG | - | tig0043867:264-283 | Msa1464050:intergenic | 40.0% |
| AGTAGACGAGGAAGAAGATA+AGG | + | tig0043867:353-372 | Msa1464050:CDS | 40.0% | |
| TTCCTAGCAATTGGAACTCT+TGG | + | tig0043867:402-421 | Msa1464050:CDS | 40.0% | |
| AACCAAGAGTTCCAATTGCT+AGG | - | tig0043867:407-426 | Msa1464050:intergenic | 40.0% | |
| AGCAATTGGAACTCTTGGTT+TGG | + | tig0043867:407-426 | Msa1464050:CDS | 40.0% | |
| !! | TGGAACTCTTGGTTTGGAAT+CGG | + | tig0043867:413-432 | Msa1464050:CDS | 40.0% |
| ! | AATGATGGTGTTAGTGGTGA+TGG | - | tig0043867:441-460 | Msa1464050:intergenic | 40.0% |
| ! | TCCATGACTATTTCTCTCTG+CGG | - | tig0043867:610-629 | Msa1464050:intergenic | 40.0% |
| AAACTCCATTTGTCCACTTC+AGG | + | tig0043867:647-666 | Msa1464050:CDS | 40.0% | |
| AACTCCATTTGTCCACTTCA+GGG | + | tig0043867:648-667 | Msa1464050:CDS | 40.0% | |
| ATATCCCTGAAGTGGACAAA+TGG | - | tig0043867:655-674 | Msa1464050:intergenic | 40.0% | |
| GAGATGCATGGCAGATTTAT+TGG | - | tig0043867:862-881 | Msa1464050:intergenic | 40.0% | |
| AGTTGAATCAACAGAGGTCT+GGG | - | tig0043867:928-947 | Msa1464050:intergenic | 40.0% | |
| AAGTTGAATCAACAGAGGTC+TGG | - | tig0043867:929-948 | Msa1464050:intergenic | 40.0% | |
| TGCTGAAGTTGAATCAACAG+AGG | - | tig0043867:934-953 | Msa1464050:intergenic | 40.0% | |
| AGATTCTCCAGATGTTTCAC+CGG | + | tig0043867:1328-1347 | Msa1464050:intron | 40.0% | |
| !! | GATTTTCAGGGTGAACTTTC+CGG | - | tig0043867:1350-1369 | Msa1464050:intergenic | 40.0% |
| ! | CTGCACATGTTGGATTTTCA+GGG | - | tig0043867:1362-1381 | Msa1464050:intergenic | 40.0% |
| ! | TCTGCACATGTTGGATTTTC+AGG | - | tig0043867:1363-1382 | Msa1464050:intergenic | 40.0% |
| ATACAGCCAAAAAGAGCAGT+TGG | + | tig0043867:1459-1478 | Msa1464050:CDS | 40.0% | |
| ! | TCCTTTCCAACTGCTCTTTT+TGG | - | tig0043867:1468-1487 | Msa1464050:intergenic | 40.0% |
| GCAGTTGGAAAGGAAAACAT+AGG | + | tig0043867:1474-1493 | Msa1464050:CDS | 40.0% | |
| AGGCAACTCCAAATTATCCT+TGG | + | tig0043867:1510-1529 | Msa1464050:CDS | 40.0% | |
| CAACTCCAAATTATCCTTGG+CGG | + | tig0043867:1513-1532 | Msa1464050:CDS | 40.0% | |
| ACATCTATCTCACTCTGCAT+TGG | + | tig0043867:1616-1635 | Msa1464050:intron | 40.0% | |
| ! | AATATGACCCGGTTGAGTTT+TGG | + | tig0043867:1694-1713 | Msa1464050:intron | 40.0% |
| TACAAGGACCAAAACTCAAC+CGG | - | tig0043867:3302-3321 | Msa1464050:intergenic | 40.0% | |
| GCAAGACACTACAACTCTAT+TGG | - | tig0043867:2522-2541 | Msa1464050:intergenic | 40.0% | |
| ! | TTGTGTGGATTAACTGGGTT+AGG | - | tig0043867:2647-2666 | Msa1464050:intergenic | 40.0% |
| AAAGTGTATGCCAACCCAAT+CGG | + | tig0043867:2665-2684 | Msa1464050:intron | 40.0% | |
| ! | ACATGCTGACTGTGCATAAT+TGG | - | tig0043867:3181-3200 | Msa1464050:intergenic | 40.0% |
| TACAAGGACCAAAACTCAAC+TGG | + | tig0043867:3302-3321 | Msa1464050:intron | 40.0% | |
| ACAAGGACCAAAACTCAACT+GGG | + | tig0043867:3303-3322 | Msa1464050:intron | 40.0% | |
| ! | AATATGGCCCAGTTGAGTTT+TGG | - | tig0043867:3313-3332 | Msa1464050:intergenic | 40.0% |
| GAAATGAAAACTCAAGCGCA+TGG | + | tig0043867:3428-3447 | Msa1464050:intron | 40.0% | |
| !! | CTTAGTGTTGGAGCTCTAAA+AGG | + | tig0043867:3483-3502 | Msa1464050:exon | 40.0% |
| !! | TTGGAGCTCTAAAAGGCAAA+GGG | + | tig0043867:3490-3509 | Msa1464050:exon | 40.0% |
| !! | AAGAGTGTTAAGAGTCTGTC+CGG | + | tig0043867:3683-3702 | Msa1464050:three_prime_UTR | 40.0% |
| CATCCTTGTGAAACCATATC+CGG | - | tig0043867:3705-3724 | Msa1464050:intergenic | 40.0% | |
| AGACGAGGAAGAAGATAAGG+AGG | + | tig0043867:356-375 | Msa1464050:CDS | 45.0% | |
| AGGAAGAAGATAAGGAGGCA+TGG | + | tig0043867:361-380 | Msa1464050:CDS | 45.0% | |
| ! | GGAAGAAGATAAGGAGGCAT+GGG | + | tig0043867:362-381 | Msa1464050:CDS | 45.0% |
| ! | GAAGAAGATAAGGAGGCATG+GGG | + | tig0043867:363-382 | Msa1464050:CDS | 45.0% |
| AGTTCCAATTGCTAGGAAGC+CGG | - | tig0043867:400-419 | Msa1464050:intergenic | 45.0% | |
| GATCAGCTTCAGCTCATTCT+CGG | - | tig0043867:511-530 | Msa1464050:intergenic | 45.0% | |
| ACCGCAGAGAGAAATAGTCA+TGG | + | tig0043867:606-625 | Msa1464050:CDS | 45.0% | |
| CCAAAGAGATATCCCTGAAG+TGG | - | tig0043867:663-682 | Msa1464050:intergenic | 45.0% | |
| CCACTTCAGGGATATCTCTT+TGG | + | tig0043867:660-679 | Msa1464050:CDS | 45.0% | |
| GAGAAGCAAACAAGCAGATC+AGG | + | tig0043867:788-807 | Msa1464050:CDS | 45.0% | |
| GCAGATCAGGACAATCTTGT+TGG | + | tig0043867:801-820 | Msa1464050:CDS | 45.0% | |
| GGACAATCTTGTTGGAGCAA+AGG | + | tig0043867:809-828 | Msa1464050:CDS | 45.0% | |
| TCCAAGATTCATGCGCAACT+TGG | + | tig0043867:1039-1058 | Msa1464050:intron | 45.0% | |
| GAACTTTCCGGTGAAACATC+TGG | - | tig0043867:1338-1357 | Msa1464050:intergenic | 45.0% | |
| TCGTACTTCTCTGCACATGT+TGG | - | tig0043867:1372-1391 | Msa1464050:intergenic | 45.0% | |
| GCCAAAAAGAGCAGTTGGAA+AGG | + | tig0043867:1464-1483 | Msa1464050:CDS | 45.0% | |
| ACATAGGACAGTGCAAGAAG+AGG | + | tig0043867:1490-1509 | Msa1464050:CDS | 45.0% | |
| CATCTGAGAATATGGAGCAG+TGG | + | tig0043867:1550-1569 | Msa1464050:CDS | 45.0% | |
| GCAGTGGATCAAAACAGATG+TGG | + | tig0043867:1566-1585 | Msa1464050:CDS | 45.0% | |
| TCAACCGGGTCATATTTGCA+GGG | - | tig0043867:1690-1709 | Msa1464050:intergenic | 45.0% | |
| ACAAGGACCAAAACTCAACC+GGG | - | tig0043867:1704-1723 | Msa1464050:intergenic | 45.0% | |
| TGCAGATTCCAGTCTATGTC+AGG | + | tig0043867:2539-2558 | Msa1464050:intron | 45.0% | |
| TATGAGCACCTGACATAGAC+TGG | - | tig0043867:2550-2569 | Msa1464050:intergenic | 45.0% | |
| AAGTGTATGCCAACCCAATC+GGG | + | tig0043867:2666-2685 | Msa1464050:intron | 45.0% | |
| TTTGTATCACCCGATTGGGT+TGG | - | tig0043867:2678-2697 | Msa1464050:intergenic | 45.0% | |
| TCAACTGGGCCATATTTGCA+GGG | + | tig0043867:3317-3336 | Msa1464050:intron | 45.0% | |
| ! | TGCATTGGTCCCTGCAAATA+TGG | - | tig0043867:3329-3348 | Msa1464050:intergenic | 45.0% |
| ! | CAAGCGCATGGCTAAGATTT+TGG | + | tig0043867:3440-3459 | Msa1464050:intron | 45.0% |
| !! | GTTGGAGCTCTAAAAGGCAA+AGG | + | tig0043867:3489-3508 | Msa1464050:exon | 45.0% |
| TCTAAAAGGCAAAGGGCGAA+CGG | + | tig0043867:3497-3516 | Msa1464050:exon | 45.0% | |
| GTTAAGAGTCTGTCCGGATA+TGG | + | tig0043867:3689-3708 | Msa1464050:three_prime_UTR | 45.0% | |
| TGTCCGGATATGGTTTCACA+AGG | + | tig0043867:3699-3718 | Msa1464050:three_prime_UTR | 45.0% | |
| !!! | AATTATTTTTTTCTAATATT+TGG | + | tig0043867:2248-2267 | Msa1464050:intron | 5.0% |
| !!! | AAATTTATTTTCATATTTTT+CGG | + | tig0043867:2890-2909 | Msa1464050:intron | 5.0% |
| !!! | ATAATTTTCATATTTTTTTT+CGG | + | tig0043867:3105-3124 | Msa1464050:intron | 5.0% |
| ! | GCAGGCAACATCAGTTGATG+AGG | + | tig0043867:212-231 | Msa1464050:CDS | 50.0% |
| ! | CTGAAACCGAACTTTGGGAG+CGG | + | tig0043867:255-274 | Msa1464050:CDS | 50.0% |
| TCTTTCGAAGCAGTTGGGAG+TGG | + | tig0043867:324-343 | Msa1464050:CDS | 50.0% | |
| TTCCAATTGCTAGGAAGCCG+GGG | - | tig0043867:398-417 | Msa1464050:intergenic | 50.0% | |
| GTTCCAATTGCTAGGAAGCC+GGG | - | tig0043867:399-418 | Msa1464050:intergenic | 50.0% | |
| TTCTCTCTGCGGTGCTTACA+TGG | - | tig0043867:599-618 | Msa1464050:intergenic | 50.0% | |
| ACACAGCCAGAGAACAACAC+TGG | + | tig0043867:752-771 | Msa1464050:CDS | 50.0% | |
| CACAGCCAGAGAACAACACT+GGG | + | tig0043867:753-772 | Msa1464050:CDS | 50.0% | |
| GCCAAGTTGCGCATGAATCT+TGG | - | tig0043867:1043-1062 | Msa1464050:intergenic | 50.0% | |
| CTCCAAATTATCCTTGGCGG+TGG | + | tig0043867:1516-1535 | Msa1464050:CDS | 50.0% | |
| TGCCACCGCCAAGGATAATT+TGG | - | tig0043867:1521-1540 | Msa1464050:intergenic | 50.0% | |
| TGGTCCCTGCAAATATGACC+CGG | + | tig0043867:1683-1702 | Msa1464050:intron | 50.0% | |
| CTCAACCGGGTCATATTTGC+AGG | - | tig0043867:1691-1710 | Msa1464050:intergenic | 50.0% | |
| GACAGTGCATAATTGCCACG+TGG | + | tig0043867:1833-1852 | Msa1464050:intron | 50.0% | |
| ! | GGGTTGGCATACACTTTGTG+TGG | - | tig0043867:2662-2681 | Msa1464050:intergenic | 50.0% |
| ACTGTGCATAATTGGCCACG+TGG | - | tig0043867:3173-3192 | Msa1464050:intergenic | 50.0% | |
| CTCAACTGGGCCATATTTGC+AGG | + | tig0043867:3316-3335 | Msa1464050:intron | 50.0% | |
| GAGTGGTAGAGCAGTAGACG+AGG | + | tig0043867:341-360 | Msa1464050:CDS | 55.0% | |
| ! | GAAGATAAGGAGGCATGGGG+TGG | + | tig0043867:366-385 | Msa1464050:CDS | 55.0% |
| ! | GCATGGGGTGGTATTTTCCC+CGG | + | tig0043867:378-397 | Msa1464050:CDS | 55.0% |
| TTCCCCGGCTTCCTAGCAAT+TGG | + | tig0043867:393-412 | Msa1464050:CDS | 55.0% | |
| ! | GCTCACCCAGTGTTGTTCTC+TGG | - | tig0043867:761-780 | Msa1464050:intergenic | 55.0% |
| AATCTTCACTGCCACCGCCA+AGG | - | tig0043867:1530-1549 | Msa1464050:intergenic | 55.0% | |
| TGCCACCATGCAGCTTCAGT+GGG | - | tig0043867:3219-3238 | Msa1464050:intergenic | 55.0% | |
| GTGGCACTCTGATGCTGATG+TGG | + | tig0043867:1802-1821 | Msa1464050:intron | 55.0% | |
| AGCATGTGCCACGTCAGCAT+CGG | + | tig0043867:3194-3213 | Msa1464050:intron | 55.0% | |
| TGCCACCATGCAGCTTCAGT+GGG | + | tig0043867:3219-3238 | Msa1464050:intron | 55.0% | |
| AGGCAAAGGGCGAACGGAAT+TGG | + | tig0043867:3503-3522 | Msa1464050:three_prime_UTR | 55.0% | |
| GGCAAAGGGCGAACGGAATT+GGG | + | tig0043867:3504-3523 | Msa1464050:three_prime_UTR | 55.0% | |
| ATGCAGCTTCAGTGGGCCCA+GGG | - | tig0043867:3226-3245 | Msa1464050:intergenic | 60.0% | |
| GTGCCACCATGCAGCTTCAG+TGG | - | tig0043867:3218-3237 | Msa1464050:intergenic | 60.0% | |
| TTGCCACGTGGCATCTGACG+TGG | + | tig0043867:1845-1864 | Msa1464050:intron | 60.0% | |
| ATGCCACGTCAGATGCCACG+TGG | - | tig0043867:3155-3174 | Msa1464050:intergenic | 60.0% | |
| ATGCCACGTCAGATGCCACG+TGG | + | tig0043867:3155-3174 | Msa1464050:intron | 60.0% | |
| GTGCCACCATGCAGCTTCAG+TGG | + | tig0043867:3218-3237 | Msa1464050:intron | 60.0% | |
| ATGCAGCTTCAGTGGGCCCA+GGG | + | tig0043867:3226-3245 | Msa1464050:intron | 60.0% | |
| CATGCAGCTTCAGTGGGCCC+AGG | - | tig0043867:3225-3244 | Msa1464050:intergenic | 65.0% | |
| CTGGGCCCACTGAAGCTGCA+TGG | + | tig0043867:1780-1799 | Msa1464050:intron | 65.0% | |
| GGCCCACTGAAGCTGCATGG+TGG | + | tig0043867:1783-1802 | Msa1464050:intron | 65.0% | |
| TGGCCACGTGGCATCTGACG+TGG | - | tig0043867:3161-3180 | Msa1464050:intergenic | 65.0% | |
| GTGGCACTCCGATGCTGACG+TGG | - | tig0043867:3205-3224 | Msa1464050:intergenic | 65.0% | |
| GGCCCACTGAAGCTGCATGG+TGG | - | tig0043867:1783-1802 | Msa1464050:intergenic | 65.0% | |
| CTGGGCCCACTGAAGCTGCA+TGG | - | tig0043867:1780-1799 | Msa1464050:intergenic | 65.0% | |
| CATGCAGCTTCAGTGGGCCC+AGG | + | tig0043867:3225-3244 | Msa1464050:intron | 65.0% | |
| TGCAGCTTCAGTGGGCCCAG+GGG | + | tig0043867:3227-3246 | Msa1464050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043867 | gene | 195 | 3911 | 195 | ID=Msa1464050;Name=Msa1464050 |
| tig0043867 | mRNA | 195 | 3911 | 195 | ID=Msa1464050-mRNA-1;Parent=Msa1464050;Name=Msa1464050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.66|1|0.5|1|3|410|353 |
| tig0043867 | exon | 195 | 974 | 195 | ID=Msa1464050-mRNA-1:exon:24293;Parent=Msa1464050-mRNA-1 |
| tig0043867 | exon | 1330 | 1591 | 1330 | ID=Msa1464050-mRNA-1:exon:24294;Parent=Msa1464050-mRNA-1 |
| tig0043867 | exon | 3482 | 3911 | 3482 | ID=Msa1464050-mRNA-1:exon:24295;Parent=Msa1464050-mRNA-1 |
| tig0043867 | CDS | 195 | 974 | 195 | ID=Msa1464050-mRNA-1:cds;Parent=Msa1464050-mRNA-1 |
| tig0043867 | CDS | 1330 | 1591 | 1330 | ID=Msa1464050-mRNA-1:cds;Parent=Msa1464050-mRNA-1 |
| tig0043867 | CDS | 3482 | 3501 | 3482 | ID=Msa1464050-mRNA-1:cds;Parent=Msa1464050-mRNA-1 |
| tig0043867 | three_prime_UTR | 3502 | 3911 | 3502 | ID=Msa1464050-mRNA-1:three_prime_utr;Parent=Msa1464050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
