Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468590 | XP_024635282.1 | 94.102 | 373 | 21 | 1 | 1 | 373 | 1 | 372 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468590 | sp|Q5XV40|LAZY1_ARATH | 34.109 | 387 | 209 | 14 | 3 | 373 | 2 | 358 | 4.63e-41 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468590 | G7JC25 | 93.801 | 371 | 22 | 1 | 3 | 373 | 2 | 371 | 0.0 | 685 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422020 | Msa0468590 | 0.884175 | 2.399105e-71 | -8.615850e-47 |
| Msa0468590 | Msa0514470 | 0.950550 | 1.305317e-108 | -8.615850e-47 |
| Msa0468590 | Msa0757800 | 0.802778 | 4.773033e-49 | -8.615850e-47 |
| Msa0468590 | Msa1450060 | 0.883330 | 4.915755e-71 | -8.615850e-47 |
| Msa0468590 | Msa1464050 | 0.801989 | 6.940608e-49 | -8.615850e-47 |
| Msa0277420 | Msa0468590 | 0.804220 | 2.397823e-49 | -8.615850e-47 |
| Msa0312530 | Msa0468590 | 0.806455 | 8.157864e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468590 | MtrunA17_Chr3g0122881 | 93.801 | 371 | 22 | 1 | 3 | 373 | 2 | 371 | 0.0 | 685 |
| Msa0468590 | MtrunA17_Chr7g0222391 | 44.048 | 420 | 146 | 20 | 4 | 373 | 3 | 383 | 1.20e-81 | 254 |
| Msa0468590 | MtrunA17_Chr7g0224731 | 35.825 | 388 | 185 | 13 | 3 | 373 | 2 | 342 | 1.32e-51 | 175 |
| Msa0468590 | MtrunA17_Chr7g0224671 | 30.887 | 327 | 148 | 13 | 1 | 302 | 17 | 290 | 2.28e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468590 | AT5G14090.1 | 34.109 | 387 | 209 | 14 | 3 | 373 | 2 | 358 | 4.71e-42 | 150 |
| Msa0468590 | AT5G14090.2 | 32.979 | 282 | 164 | 8 | 3 | 271 | 2 | 271 | 1.74e-27 | 110 |
Find 110 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAATAAGATTCGGTTTA+TGG | 0.065232 | 3_3:+70282234 | Msa0468590:three_prime_UTR |
| GAGATGCATGGCAGATTTAT+TGG | 0.247230 | 3_3:-70281002 | None:intergenic |
| TGCCACCGCCAAGGGTAATT+TGG | 0.255351 | 3_3:-70281661 | None:intergenic |
| CTTATTCTTTGACACTGATA+TGG | 0.261165 | 3_3:-70280861 | None:intergenic |
| CCACTTCAGGGATATCTCTT+TGG | 0.265174 | 3_3:+70280803 | Msa0468590:CDS |
| CATATCAGTGTCAAAGAATA+AGG | 0.288207 | 3_3:+70280862 | Msa0468590:CDS |
| AGGCAAAGGGCGAACGGAAT+TGG | 0.300171 | 3_3:+70281944 | Msa0468590:three_prime_UTR |
| AAGACTATGCAATGCAATAA+TGG | 0.301066 | 3_3:+70282016 | Msa0468590:three_prime_UTR |
| TGAAGATTCATCTGAGAATA+TGG | 0.319257 | 3_3:+70281685 | Msa0468590:CDS |
| CTTAGTGTTGGAGCTCTAAA+AGG | 0.331716 | 3_3:+70281924 | Msa0468590:exon |
| GTTAAGAGTCTGTCCGGATA+TGG | 0.336650 | 3_3:+70282130 | Msa0468590:three_prime_UTR |
| TTCTCTCTGCGGTGCTTACA+TGG | 0.339766 | 3_3:-70280739 | None:intergenic |
| GAACTTTCCGGTGAAATATC+TGG | 0.341905 | 3_3:-70281478 | None:intergenic |
| TGTCTTTAGTTAATTATTTG+AGG | 0.346140 | 3_3:+70282092 | Msa0468590:three_prime_UTR |
| AGACAGAAAACTGCATAATA+AGG | 0.354735 | 3_3:+70281096 | Msa0468590:CDS |
| CTTAATTTGCAGCAGTTACT+TGG | 0.355697 | 3_3:+70279754 | Msa0468590:intron |
| GGATGATACTGACAATAAAA+AGG | 0.366676 | 3_3:+70280973 | Msa0468590:CDS |
| AAACTCCATTTGTCCACTTC+AGG | 0.368249 | 3_3:+70280790 | Msa0468590:CDS |
| TTCCTAGCAATTGGAACTCT+TGG | 0.378228 | 3_3:+70280545 | Msa0468590:CDS |
| AGCAATTGGAACTCTTGGTT+TGG | 0.393170 | 3_3:+70280550 | Msa0468590:CDS |
| CACTATCTGAAACCGAACTT+TGG | 0.396952 | 3_3:+70280392 | Msa0468590:CDS |
| GATCAGCTTCAGCTCATTCT+CGG | 0.397412 | 3_3:-70280651 | None:intergenic |
| AATGCTGGTCCCAACACTAA+TGG | 0.397418 | 3_3:+70276597 | None:intergenic |
| TTCCCCGGCTTCCTAGCAAT+TGG | 0.406570 | 3_3:+70280536 | Msa0468590:CDS |
| GGCAAAGGGCGAACGGAATT+GGG | 0.408082 | 3_3:+70281945 | Msa0468590:three_prime_UTR |
| GAGAAGCAAACAAGCAGATC+AGG | 0.413070 | 3_3:+70280931 | Msa0468590:CDS |
| AAGTTGAATCAACAGAGGTC+TGG | 0.422480 | 3_3:-70281069 | None:intergenic |
| GAAACAATTAAAATAAGATT+CGG | 0.422974 | 3_3:+70282227 | Msa0468590:three_prime_UTR |
| TGGAACTCTTGGTTTGGAAT+CGG | 0.430619 | 3_3:+70280556 | Msa0468590:CDS |
| ATGTATAATGTTCAAGAGTA+AGG | 0.431130 | 3_3:+70282269 | Msa0468590:three_prime_UTR |
| ACTATCTGAAACCGAACTTT+GGG | 0.435339 | 3_3:+70280393 | Msa0468590:CDS |
| AGACTATGCAATGCAATAAT+GGG | 0.436065 | 3_3:+70282017 | Msa0468590:three_prime_UTR |
| ATGCTGGTCCCAACACTAAT+GGG | 0.440075 | 3_3:+70276598 | None:intergenic |
| GCAGATCAGGACAATCTTGT+TGG | 0.449301 | 3_3:+70280944 | Msa0468590:CDS |
| AACTCCATTTGTCCACTTCA+GGG | 0.453747 | 3_3:+70280791 | Msa0468590:CDS |
| GAAGAAGAAAAGAATGAATG+AGG | 0.455837 | 3_3:+70281535 | Msa0468590:CDS |
| GCTCACCCAGTGTTGTTCTC+TGG | 0.456925 | 3_3:-70280901 | None:intergenic |
| AATGATGGTGTTAGTGGTGA+TGG | 0.457780 | 3_3:-70280581 | None:intergenic |
| GTTCCAATTGCTAGGAAGCC+GGG | 0.462497 | 3_3:-70280539 | None:intergenic |
| AGAAAATCTTTCGAAGCAGT+TGG | 0.467282 | 3_3:+70280461 | Msa0468590:CDS |
| TGAGAATATAATAACTGAAA+AGG | 0.468108 | 3_3:+70280616 | Msa0468590:CDS |
| AACAACAATGATGATTCATC+TGG | 0.470245 | 3_3:+70280707 | Msa0468590:CDS |
| GAAAATCTTTCGAAGCAGTT+GGG | 0.473047 | 3_3:+70280462 | Msa0468590:CDS |
| AGATGAATCATCATTGTTGT+TGG | 0.478539 | 3_3:-70280705 | None:intergenic |
| ATGGAAAATGATGGTGTTAG+TGG | 0.481586 | 3_3:-70280587 | None:intergenic |
| AACTGACTCCCATTAGTGTT+GGG | 0.488895 | 3_3:-70276606 | None:intergenic |
| TAAGCAAGTGAATGTAAAGA+AGG | 0.489282 | 3_3:+70282205 | Msa0468590:three_prime_UTR |
| ATATCCCTGAAGTGGACAAA+TGG | 0.494244 | 3_3:-70280795 | None:intergenic |
| AACTAAAGACACAAAACATA+AGG | 0.499571 | 3_3:-70282080 | None:intergenic |
| TCATATTAATTTGATGCTCG+TGG | 0.500786 | 3_3:-70281974 | None:intergenic |
| AGTTGAATCAACAGAGGTCT+GGG | 0.504381 | 3_3:-70281068 | None:intergenic |
| AAGAGTGTTAAGAGTCTGTC+CGG | 0.508459 | 3_3:+70282124 | Msa0468590:three_prime_UTR |
| TTAAATTGCAGACTTAGTGT+TGG | 0.509625 | 3_3:+70281912 | Msa0468590:intron |
| CATCCTTGTGAAACCATATC+CGG | 0.509628 | 3_3:-70282143 | None:intergenic |
| GGAAGAAGATAAGGAGGCAT+GGG | 0.511093 | 3_3:+70280505 | Msa0468590:CDS |
| CTTTCAGTTCTATACACTGT+GGG | 0.515729 | 3_3:+70282330 | Msa0468590:three_prime_UTR |
| ATTTGCAGCAGTTACTTGGA+TGG | 0.516221 | 3_3:+70279758 | Msa0468590:intron |
| AAGAAGAAAAGAATGAATGA+GGG | 0.517369 | 3_3:+70281536 | Msa0468590:CDS |
| AGTAGACGAGGAAGAAGATA+AGG | 0.519096 | 3_3:+70280496 | Msa0468590:CDS |
| AGTTCCAATTGCTAGGAAGC+CGG | 0.522924 | 3_3:-70280540 | None:intergenic |
| CAAAAGTAACAAAGTTGAAG+AGG | 0.524580 | 3_3:+70281568 | Msa0468590:CDS |
| AGAGGTCTGGGAAGAAGCAT+GGG | 0.527489 | 3_3:-70281056 | None:intergenic |
| CAGAGGTCTGGGAAGAAGCA+TGG | 0.527966 | 3_3:-70281057 | None:intergenic |
| CAACTCCAAATTACCCTTGG+CGG | 0.530405 | 3_3:+70281656 | Msa0468590:CDS |
| CACTGAACCTTTCAAAGACC+TGG | 0.535667 | 3_3:+70279807 | Msa0468590:CDS |
| ATCTTCACTGCCACCGCCAA+GGG | 0.536347 | 3_3:-70281669 | None:intergenic |
| TATGAAAGATATGATCGTCA+TGG | 0.538059 | 3_3:+70281992 | Msa0468590:three_prime_UTR |
| TATTATATTCTCAACAGAGA+TGG | 0.542260 | 3_3:-70280606 | None:intergenic |
| GGACAATCTTGTTGGAGCAA+AGG | 0.550435 | 3_3:+70280952 | Msa0468590:CDS |
| TCTTTCGAAGCAGTTGGGAG+TGG | 0.552062 | 3_3:+70280467 | Msa0468590:CDS |
| CCAGCGACCAGGTCTTTGAA+AGG | 0.556891 | 3_3:-70279814 | None:intergenic |
| CCTTTCAAAGACCTGGTCGC+TGG | 0.558214 | 3_3:+70279814 | Msa0468590:CDS |
| AATCTTCACTGCCACCGCCA+AGG | 0.558247 | 3_3:-70281670 | None:intergenic |
| AAACTGACTCCCATTAGTGT+TGG | 0.558780 | 3_3:-70276607 | None:intergenic |
| TCGTACTTCTCTGCACATGT+TGG | 0.562643 | 3_3:-70281512 | None:intergenic |
| ATGAAAGATATGATCGTCAT+GGG | 0.567897 | 3_3:+70281993 | Msa0468590:three_prime_UTR |
| AGGAAGAAGATAAGGAGGCA+TGG | 0.571385 | 3_3:+70280504 | Msa0468590:CDS |
| CTCCAAATTACCCTTGGCGG+TGG | 0.573132 | 3_3:+70281659 | Msa0468590:CDS |
| CCAAAGAGATATCCCTGAAG+TGG | 0.575875 | 3_3:-70280803 | None:intergenic |
| AAAATAGCTTACCAGCGACC+AGG | 0.581021 | 3_3:-70279825 | None:intergenic |
| GAAGATAAGGAGGCATGGGG+TGG | 0.581558 | 3_3:+70280509 | Msa0468590:CDS |
| AGATTCTCCAGATATTTCAC+CGG | 0.584446 | 3_3:+70281471 | Msa0468590:intron |
| TCAACAGAGATGGAAAATGA+TGG | 0.585903 | 3_3:-70280596 | None:intergenic |
| AGGCAACTCCAAATTACCCT+TGG | 0.588508 | 3_3:+70281653 | Msa0468590:CDS |
| TTGGAGCTCTAAAAGGCAAA+GGG | 0.588657 | 3_3:+70281931 | Msa0468590:exon |
| ATAACACTATCAAAGAATGA+AGG | 0.592308 | 3_3:+70279640 | Msa0468590:exon |
| TCTAAAAGGCAAAGGGCGAA+CGG | 0.593553 | 3_3:+70281938 | Msa0468590:exon |
| GCAGTTGGAAAGGAAAACAT+AGG | 0.595191 | 3_3:+70281617 | Msa0468590:CDS |
| CACAGCCAGAGAACAACACT+GGG | 0.596125 | 3_3:+70280896 | Msa0468590:CDS |
| GTTGGAGCTCTAAAAGGCAA+AGG | 0.599355 | 3_3:+70281930 | Msa0468590:exon |
| ACACAGCCAGAGAACAACAC+TGG | 0.600693 | 3_3:+70280895 | Msa0468590:CDS |
| AGACGAGGAAGAAGATAAGG+AGG | 0.605480 | 3_3:+70280499 | Msa0468590:CDS |
| GATGGATGCATAGAAAACTT+CGG | 0.607420 | 3_3:+70279776 | Msa0468590:CDS |
| CTGAAACCGAACTTTGGGAG+CGG | 0.608233 | 3_3:+70280398 | Msa0468590:CDS |
| CATCTGAGAATATGGAGCAG+TGG | 0.617126 | 3_3:+70281693 | Msa0468590:CDS |
| GCAGGCAACATCAGTTGATG+AGG | 0.617201 | 3_3:+70280355 | Msa0468590:CDS |
| AACCAAGAGTTCCAATTGCT+AGG | 0.618323 | 3_3:-70280547 | None:intergenic |
| TTCCAATTGCTAGGAAGCCG+GGG | 0.628342 | 3_3:-70280538 | None:intergenic |
| GCAGTGGATCAAAACAGATG+TGG | 0.633740 | 3_3:+70281709 | Msa0468590:CDS |
| ACATAGGACAGTGCAAGAAG+AGG | 0.639282 | 3_3:+70281633 | Msa0468590:CDS |
| TGTTTCTGATAATTCAACTG+CGG | 0.657633 | 3_3:-70280828 | None:intergenic |
| GAGTGGTAGAGCAGTAGACG+AGG | 0.660218 | 3_3:+70280484 | Msa0468590:CDS |
| TCCATGACTATTTCTCTCTG+CGG | 0.668096 | 3_3:-70280750 | None:intergenic |
| AAGAAAAGAATGAATGAGGG+AGG | 0.670784 | 3_3:+70281539 | Msa0468590:CDS |
| TGCTGAAGTTGAATCAACAG+AGG | 0.671518 | 3_3:-70281074 | None:intergenic |
| ACTTTCAGTTCTATACACTG+TGG | 0.672237 | 3_3:+70282329 | Msa0468590:three_prime_UTR |
| TGTCCGGATATGGTTTCACA+AGG | 0.673692 | 3_3:+70282140 | Msa0468590:three_prime_UTR |
| ACCGCAGAGAGAAATAGTCA+TGG | 0.693609 | 3_3:+70280749 | Msa0468590:CDS |
| GAGGTCTGGGAAGAAGCATG+GGG | 0.705384 | 3_3:-70281055 | None:intergenic |
| GAAGAAGATAAGGAGGCATG+GGG | 0.707091 | 3_3:+70280506 | Msa0468590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATCAAAAGAAAAAA+GGG | - | chr3_3:70278638-70278657 | None:intergenic | 10.0% |
| !! | ATTAAAAATCAAAAGAAAAA+AGG | - | chr3_3:70278639-70278658 | None:intergenic | 10.0% |
| !! | AATATATATTATCTTCTTAA+TGG | - | chr3_3:70280141-70280160 | None:intergenic | 10.0% |
| !! | ATTTCTACTATTATACAAAT+AGG | - | chr3_3:70277145-70277164 | None:intergenic | 15.0% |
| !! | TATAATAGTAGAAATATAGT+TGG | + | chr3_3:70277150-70277169 | Msa0468590:intron | 15.0% |
| !! | TCTTAAAATATTTGAAAGAA+GGG | - | chr3_3:70277249-70277268 | None:intergenic | 15.0% |
| !! | ATCTTAAAATATTTGAAAGA+AGG | - | chr3_3:70277250-70277269 | None:intergenic | 15.0% |
| !! | ATAACTTATACTTACAAAAT+CGG | - | chr3_3:70277613-70277632 | None:intergenic | 15.0% |
| !! | CTTTAGGTAAAAAAAAAAAA+AGG | + | chr3_3:70277838-70277857 | Msa0468590:intron | 15.0% |
| !! | AAATCATTTATGTTATCTAT+TGG | - | chr3_3:70277977-70277996 | None:intergenic | 15.0% |
| !! | ATAGATAACATAAATGATTT+AGG | + | chr3_3:70277977-70277996 | Msa0468590:intron | 15.0% |
| !!! | TTTTTTATAATTTGTTAGGA+TGG | - | chr3_3:70278604-70278623 | None:intergenic | 15.0% |
| !!! | TGGATTTTTTATAATTTGTT+AGG | - | chr3_3:70278608-70278627 | None:intergenic | 15.0% |
| !! | AAATTTGATTATAGTAAACT+TGG | - | chr3_3:70278724-70278743 | None:intergenic | 15.0% |
| !!! | ACTAAGCAAAATATATTTTA+TGG | - | chr3_3:70280213-70280232 | None:intergenic | 15.0% |
| !! | ACAAATATTATAACTAACAA+AGG | - | chr3_3:70280322-70280341 | None:intergenic | 15.0% |
| !! | TTCCAATTAGTATTTATTTA+AGG | + | chr3_3:70281405-70281424 | Msa0468590:intron | 15.0% |
| !! | TAACTATATTAATTAATCTG+TGG | + | chr3_3:70281443-70281462 | Msa0468590:intron | 15.0% |
| !! | AACTATATTAATTAATCTGT+GGG | + | chr3_3:70281444-70281463 | Msa0468590:intron | 15.0% |
| !! | GAAACAATTAAAATAAGATT+CGG | + | chr3_3:70282227-70282246 | Msa0468590:three_prime_UTR | 15.0% |
| !! | ACCATATTAAAGTTTGTATT+GGG | - | chr3_3:70277637-70277656 | None:intergenic | 20.0% |
| !! | TACCATATTAAAGTTTGTAT+TGG | - | chr3_3:70277638-70277657 | None:intergenic | 20.0% |
| !! | AAAAATGTCAACATAACTTT+AGG | + | chr3_3:70277822-70277841 | Msa0468590:intron | 20.0% |
| !! | AGACATGCAAAATAAAATAA+TGG | + | chr3_3:70277892-70277911 | Msa0468590:intron | 20.0% |
| !!! | GTATATTTTTTTTCTTTGGT+TGG | - | chr3_3:70278105-70278124 | None:intergenic | 20.0% |
| !!! | ATCGGTATATTTTTTTTCTT+TGG | - | chr3_3:70278109-70278128 | None:intergenic | 20.0% |
| !! | ATTTGATGTCAAACATTAAT+CGG | - | chr3_3:70278127-70278146 | None:intergenic | 20.0% |
| !! | TATTTAGAAAATGAAAGAAC+TGG | + | chr3_3:70278233-70278252 | Msa0468590:intron | 20.0% |
| !! | TGTTTACCAAAAAATCATAA+CGG | + | chr3_3:70278807-70278826 | Msa0468590:intron | 20.0% |
| !!! | AAAGAATTTCCCTTATTTTA+TGG | - | chr3_3:70279232-70279251 | None:intergenic | 20.0% |
| !! | TGTTGACATATAATAAACAA+TGG | + | chr3_3:70279455-70279474 | Msa0468590:intron | 20.0% |
| !!! | ATTAATTCATTGTCTACTTT+TGG | - | chr3_3:70279985-70280004 | None:intergenic | 20.0% |
| !! | CTAATTCATTTCTATCAATT+TGG | - | chr3_3:70280168-70280187 | None:intergenic | 20.0% |
| !! | TGAGAATATAATAACTGAAA+AGG | + | chr3_3:70280616-70280635 | Msa0468590:CDS | 20.0% |
| !! | TTGATTAATCTTTATAAGAG+TGG | + | chr3_3:70281252-70281271 | Msa0468590:intron | 20.0% |
| !! | TAATTGTATAGAAAGTTGTT+GGG | + | chr3_3:70281297-70281316 | Msa0468590:intron | 20.0% |
| !! | AATACTAATTGGAAACAAAA+AGG | - | chr3_3:70281399-70281418 | None:intergenic | 20.0% |
| !! | GACCTTAAATAAATACTAAT+TGG | - | chr3_3:70281410-70281429 | None:intergenic | 20.0% |
| !! | TGTCTTTAGTTAATTATTTG+AGG | + | chr3_3:70282092-70282111 | Msa0468590:three_prime_UTR | 20.0% |
| !!! | TTAAAATAAGATTCGGTTTA+TGG | + | chr3_3:70282234-70282253 | Msa0468590:three_prime_UTR | 20.0% |
| !! | AGTTTCAATTGATTGATAAC+TGG | + | chr3_3:70276777-70276796 | Msa0468590:intron | 25.0% |
| ! | TCATAGTATGAAAATAAGGA+AGG | - | chr3_3:70277105-70277124 | None:intergenic | 25.0% |
| ! | TAGGTCATAGTATGAAAATA+AGG | - | chr3_3:70277109-70277128 | None:intergenic | 25.0% |
| ! | TCTACTATTATACAAATAGG+TGG | - | chr3_3:70277142-70277161 | None:intergenic | 25.0% |
| ! | ACATTTAAGAAACAGTCAAA+TGG | - | chr3_3:70277278-70277297 | None:intergenic | 25.0% |
| !! | ATTTGACTGTTTCTTAAATG+TGG | + | chr3_3:70277277-70277296 | Msa0468590:intron | 25.0% |
| ! | ATTATTTGATGAATGATGTC+AGG | + | chr3_3:70277441-70277460 | Msa0468590:intron | 25.0% |
| ! | GTATTAGAACCTATCAATAA+GGG | + | chr3_3:70277655-70277674 | Msa0468590:intron | 25.0% |
| !! | ATTATATCTTTTGATCCAAG+TGG | - | chr3_3:70277757-70277776 | None:intergenic | 25.0% |
| ! | CATTTATGTTATCTATTGGA+CGG | - | chr3_3:70277973-70277992 | None:intergenic | 25.0% |
| ! | TTGGAATACACATGAAAATA+CGG | - | chr3_3:70278025-70278044 | None:intergenic | 25.0% |
| !! | TTACTATTGATGGTTGATAT+TGG | - | chr3_3:70278044-70278063 | None:intergenic | 25.0% |
| ! | ATATCAACCATCAATAGTAA+AGG | + | chr3_3:70278044-70278063 | Msa0468590:intron | 25.0% |
| !!! | AAGTTAGTTTTTTTGACCAA+AGG | + | chr3_3:70278173-70278192 | Msa0468590:intron | 25.0% |
| ! | AGTTAGATAAACTTGGAATA+TGG | + | chr3_3:70278200-70278219 | Msa0468590:intron | 25.0% |
| ! | GTTAGATAAACTTGGAATAT+GGG | + | chr3_3:70278201-70278220 | Msa0468590:intron | 25.0% |
| !!! | GCTTTTTTGTATGTTTGTTT+TGG | + | chr3_3:70278255-70278274 | Msa0468590:intron | 25.0% |
| ! | AATAAAGTTAAGTGACATGT+TGG | + | chr3_3:70278353-70278372 | Msa0468590:intron | 25.0% |
| !! | TAGGTATAAAACCAATTTTG+AGG | + | chr3_3:70278436-70278455 | Msa0468590:intron | 25.0% |
| ! | AAAGAAAAAAGGGTAAAAGT+TGG | - | chr3_3:70278628-70278647 | None:intergenic | 25.0% |
| ! | TGTCTTCAATACTGAAAAAT+TGG | + | chr3_3:70278779-70278798 | Msa0468590:intron | 25.0% |
| !!! | ATAGAACCGTTATGATTTTT+TGG | - | chr3_3:70278816-70278835 | None:intergenic | 25.0% |
| ! | AATTATACACACATCTCTAT+CGG | + | chr3_3:70279181-70279200 | Msa0468590:intron | 25.0% |
| ! | TCATCATGAGCAAAATTATA+AGG | + | chr3_3:70279341-70279360 | Msa0468590:intron | 25.0% |
| ! | ATAATCTATATAAGAGGAGA+AGG | - | chr3_3:70279572-70279591 | None:intergenic | 25.0% |
| ! | GTGATGATAATCTATATAAG+AGG | - | chr3_3:70279578-70279597 | None:intergenic | 25.0% |
| ! | ATAACACTATCAAAGAATGA+AGG | + | chr3_3:70279640-70279659 | Msa0468590:exon | 25.0% |
| ! | AATTAATGCCAGATTTAACT+AGG | + | chr3_3:70279998-70280017 | Msa0468590:intron | 25.0% |
| ! | TATTATATTCTCAACAGAGA+TGG | - | chr3_3:70280609-70280628 | None:intergenic | 25.0% |
| ! | GAAAAAAGCTCAAGAAAAAA+AGG | + | chr3_3:70281029-70281048 | Msa0468590:CDS | 25.0% |
| ! | ATTAATCTTTATAAGAGTGG+TGG | + | chr3_3:70281255-70281274 | Msa0468590:intron | 25.0% |
| ! | GTAATTGTATAGAAAGTTGT+TGG | + | chr3_3:70281296-70281315 | Msa0468590:intron | 25.0% |
| ! | AATTGTATAGAAAGTTGTTG+GGG | + | chr3_3:70281298-70281317 | Msa0468590:intron | 25.0% |
| ! | ATATAGTTAGCTAAAGTCTA+GGG | - | chr3_3:70281432-70281451 | None:intergenic | 25.0% |
| ! | AATATAGTTAGCTAAAGTCT+AGG | - | chr3_3:70281433-70281452 | None:intergenic | 25.0% |
| ! | AAGAAGAAAAGAATGAATGA+GGG | + | chr3_3:70281536-70281555 | Msa0468590:CDS | 25.0% |
| ! | AACTAAAGACACAAAACATA+AGG | - | chr3_3:70282083-70282102 | None:intergenic | 25.0% |
| ! | ATGTATAATGTTCAAGAGTA+AGG | + | chr3_3:70282269-70282288 | Msa0468590:three_prime_UTR | 25.0% |
| AACTAAAAGATGCTCAACAT+TGG | - | chr3_3:70276761-70276780 | None:intergenic | 30.0% | |
| TCAAAAATCGAGCATCTTAT+AGG | - | chr3_3:70276816-70276835 | None:intergenic | 30.0% | |
| ATAAACTTGTCTGATGACAT+CGG | + | chr3_3:70276843-70276862 | Msa0468590:intron | 30.0% | |
| AACAAAACATGTCAAGCAAA+TGG | - | chr3_3:70276988-70277007 | None:intergenic | 30.0% | |
| !!! | TGACATGTTTTGTTTTCTCA+TGG | + | chr3_3:70276994-70277013 | Msa0468590:intron | 30.0% |
| AAACAAAAATTTGAGAGAGC+AGG | - | chr3_3:70277059-70277078 | None:intergenic | 30.0% | |
| ! | AGTTTTTCTTTGGCATGAAA+CGG | - | chr3_3:70277393-70277412 | None:intergenic | 30.0% |
| ! | TGAAGTTCGAAGTTTTTCTT+TGG | - | chr3_3:70277403-70277422 | None:intergenic | 30.0% |
| GCCCAATACAAACTTTAATA+TGG | + | chr3_3:70277633-70277652 | Msa0468590:intron | 30.0% | |
| GGTATTAGAACCTATCAATA+AGG | + | chr3_3:70277654-70277673 | Msa0468590:intron | 30.0% | |
| GGTGCTTGTATATGTATAAA+CGG | - | chr3_3:70277686-70277705 | None:intergenic | 30.0% | |
| TATTCAAGAATGAGACAACA+TGG | + | chr3_3:70277786-70277805 | Msa0468590:intron | 30.0% | |
| ACTTTGACCTTTACTATTGA+TGG | - | chr3_3:70278054-70278073 | None:intergenic | 30.0% | |
| ! | AAAAAACTAACTTGCACTTG+TGG | - | chr3_3:70278166-70278185 | None:intergenic | 30.0% |
| !!! | AGTGACATGTTGGTTTTTTT+AGG | + | chr3_3:70278363-70278382 | Msa0468590:intron | 30.0% |
| !!! | GTGACATGTTGGTTTTTTTA+GGG | + | chr3_3:70278364-70278383 | Msa0468590:intron | 30.0% |
| ! | TTTTATACCTACAACCATGT+TGG | - | chr3_3:70278427-70278446 | None:intergenic | 30.0% |
| AATAAACAATTTGCAGCTAG+TGG | + | chr3_3:70278523-70278542 | Msa0468590:intron | 30.0% | |
| ATAAACAATTTGCAGCTAGT+GGG | + | chr3_3:70278524-70278543 | Msa0468590:intron | 30.0% | |
| ! | AGAACTTGCTTCAAGTTTAT+CGG | - | chr3_3:70278752-70278771 | None:intergenic | 30.0% |
| ! | TTCAGTATTGAAGACAGAAT+CGG | - | chr3_3:70278775-70278794 | None:intergenic | 30.0% |
| TTTGTGCAATAGATATAGAG+AGG | + | chr3_3:70278872-70278891 | Msa0468590:intron | 30.0% | |
| ATACACAAGAAGCTGTAAAA+GGG | + | chr3_3:70278968-70278987 | Msa0468590:intron | 30.0% | |
| AGATGTGTGTATAATTCGAT+TGG | - | chr3_3:70279177-70279196 | None:intergenic | 30.0% | |
| !!! | ATAAGCATGTTTTTCTGGTT+CGG | - | chr3_3:70279303-70279322 | None:intergenic | 30.0% |
| ! | GAAACATAAGCATGTTTTTC+TGG | - | chr3_3:70279308-70279327 | None:intergenic | 30.0% |
| GAAAAACATGCTTATGTTTC+TGG | + | chr3_3:70279308-70279327 | Msa0468590:intron | 30.0% | |
| ATCTCTTTATAGACATAAGC+AGG | + | chr3_3:70279500-70279519 | Msa0468590:intron | 30.0% | |
| !! | GTAGCTTTATGGAATATGAT+CGG | + | chr3_3:70279522-70279541 | Msa0468590:intron | 30.0% |
| ! | TATGTATGTTTGATAGCTGT+TGG | + | chr3_3:70279916-70279935 | Msa0468590:intron | 30.0% |
| !! | AATTCATTGTCTACTTTTGG+AGG | - | chr3_3:70279982-70280001 | None:intergenic | 30.0% |
| GGAGCAACAAATATATATGT+TGG | - | chr3_3:70280192-70280211 | None:intergenic | 30.0% | |
| TAATATTTGTGTTGCGTTTC+AGG | + | chr3_3:70280332-70280351 | Msa0468590:intron | 30.0% | |
| AATATTTGTGTTGCGTTTCA+GGG | + | chr3_3:70280333-70280352 | Msa0468590:intron | 30.0% | |
| AGATGAATCATCATTGTTGT+TGG | - | chr3_3:70280708-70280727 | None:intergenic | 30.0% | |
| AACAACAATGATGATTCATC+TGG | + | chr3_3:70280707-70280726 | Msa0468590:CDS | 30.0% | |
| ! | TGTTTCTGATAATTCAACTG+CGG | - | chr3_3:70280831-70280850 | None:intergenic | 30.0% |
| CTTATTCTTTGACACTGATA+TGG | - | chr3_3:70280864-70280883 | None:intergenic | 30.0% | |
| CATATCAGTGTCAAAGAATA+AGG | + | chr3_3:70280862-70280881 | Msa0468590:CDS | 30.0% | |
| GGATGATACTGACAATAAAA+AGG | + | chr3_3:70280973-70280992 | Msa0468590:CDS | 30.0% | |
| TGATACTGACAATAAAAAGG+AGG | + | chr3_3:70280976-70280995 | Msa0468590:CDS | 30.0% | |
| AGACAGAAAACTGCATAATA+AGG | + | chr3_3:70281096-70281115 | Msa0468590:CDS | 30.0% | |
| AAGAGAAAAATGATTCGCAT+CGG | + | chr3_3:70281206-70281225 | Msa0468590:intron | 30.0% | |
| ATTGTATAGAAAGTTGTTGG+GGG | + | chr3_3:70281299-70281318 | Msa0468590:intron | 30.0% | |
| GAAACAAAAAGGCAAATGAT+TGG | - | chr3_3:70281388-70281407 | None:intergenic | 30.0% | |
| GAAGAAGAAAAGAATGAATG+AGG | + | chr3_3:70281535-70281554 | Msa0468590:CDS | 30.0% | |
| !!! | CAACTTTGTTACTTTTGTTG+TGG | - | chr3_3:70281565-70281584 | None:intergenic | 30.0% |
| CAAAAGTAACAAAGTTGAAG+AGG | + | chr3_3:70281568-70281587 | Msa0468590:CDS | 30.0% | |
| TGAAGATTCATCTGAGAATA+TGG | + | chr3_3:70281685-70281704 | Msa0468590:CDS | 30.0% | |
| TTAAATTGCAGACTTAGTGT+TGG | + | chr3_3:70281912-70281931 | Msa0468590:intron | 30.0% | |
| ! | TCATATTAATTTGATGCTCG+TGG | - | chr3_3:70281977-70281996 | None:intergenic | 30.0% |
| TATGAAAGATATGATCGTCA+TGG | + | chr3_3:70281992-70282011 | Msa0468590:three_prime_UTR | 30.0% | |
| ATGAAAGATATGATCGTCAT+GGG | + | chr3_3:70281993-70282012 | Msa0468590:three_prime_UTR | 30.0% | |
| AAGACTATGCAATGCAATAA+TGG | + | chr3_3:70282016-70282035 | Msa0468590:three_prime_UTR | 30.0% | |
| AGACTATGCAATGCAATAAT+GGG | + | chr3_3:70282017-70282036 | Msa0468590:three_prime_UTR | 30.0% | |
| TAAGCAAGTGAATGTAAAGA+AGG | + | chr3_3:70282205-70282224 | Msa0468590:three_prime_UTR | 30.0% | |
| ! | AGTTTTCATATGCACTGTCA+AGG | + | chr3_3:70276625-70276644 | Msa0468590:five_prime_UTR | 35.0% |
| TTGGGGAAGGATTAAAATGT+CGG | - | chr3_3:70276735-70276754 | None:intergenic | 35.0% | |
| GATCAGAGACATGTTGTATT+TGG | + | chr3_3:70276881-70276900 | Msa0468590:intron | 35.0% | |
| TGTTGTATTTGGCCAAGTAT+TGG | + | chr3_3:70276892-70276911 | Msa0468590:intron | 35.0% | |
| AGTTGGAGTTAGTACCATAT+TGG | + | chr3_3:70277167-70277186 | Msa0468590:intron | 35.0% | |
| GTTGGAGTTAGTACCATATT+GGG | + | chr3_3:70277168-70277187 | Msa0468590:intron | 35.0% | |
| ! | GGATTTGAAATCTCCCAATA+TGG | - | chr3_3:70277184-70277203 | None:intergenic | 35.0% |
| GGAGATTTCAAATCCTACAT+GGG | + | chr3_3:70277189-70277208 | Msa0468590:intron | 35.0% | |
| AAAGAAGGGTTTCTGCAATT+TGG | - | chr3_3:70277235-70277254 | None:intergenic | 35.0% | |
| ! | GACTGTTTCTTAAATGTGGA+AGG | + | chr3_3:70277281-70277300 | Msa0468590:intron | 35.0% |
| !! | ACTTACAAAATCGGTTTGCA+AGG | - | chr3_3:70277604-70277623 | None:intergenic | 35.0% |
| TGAAAAAACCAAGTTCCACT+TGG | + | chr3_3:70277739-70277758 | Msa0468590:intron | 35.0% | |
| ! | GCATGTCTTTTTATCTCTTC+AGG | - | chr3_3:70277880-70277899 | None:intergenic | 35.0% |
| ! | TGTGCCTTTCTCTCTTTTAT+TGG | + | chr3_3:70277945-70277964 | Msa0468590:intron | 35.0% |
| GGTTCCAATAAAAGAGAGAA+AGG | - | chr3_3:70277952-70277971 | None:intergenic | 35.0% | |
| ACACATGAAAATACGGTGTT+GGG | - | chr3_3:70278018-70278037 | None:intergenic | 35.0% | |
| TACACATGAAAATACGGTGT+TGG | - | chr3_3:70278019-70278038 | None:intergenic | 35.0% | |
| ! | GTTTATCTAACTTGCACCTT+TGG | - | chr3_3:70278192-70278211 | None:intergenic | 35.0% |
| AGGTGCAAGTTAGATAAACT+TGG | + | chr3_3:70278193-70278212 | Msa0468590:intron | 35.0% | |
| TTCTACTCTACAGTACTACT+AGG | + | chr3_3:70278283-70278302 | Msa0468590:intron | 35.0% | |
| CAGCAAATAATGTACCAACA+TGG | + | chr3_3:70278410-70278429 | Msa0468590:intron | 35.0% | |
| TAATGTACCAACATGGTTGT+AGG | + | chr3_3:70278417-70278436 | Msa0468590:intron | 35.0% | |
| TGAAGAGCTTACCTCAAAAT+TGG | - | chr3_3:70278450-70278469 | None:intergenic | 35.0% | |
| CTCTTCAGTAAAATTCAACG+CGG | + | chr3_3:70278463-70278482 | Msa0468590:intron | 35.0% | |
| GTTAGGATGGATAACTTTGT+GGG | - | chr3_3:70278591-70278610 | None:intergenic | 35.0% | |
| TGTTAGGATGGATAACTTTG+TGG | - | chr3_3:70278592-70278611 | None:intergenic | 35.0% | |
| TTGTGTATCAAACACCTAAC+TGG | - | chr3_3:70278956-70278975 | None:intergenic | 35.0% | |
| GATACACAAGAAGCTGTAAA+AGG | + | chr3_3:70278967-70278986 | Msa0468590:intron | 35.0% | |
| TACACAAGAAGCTGTAAAAG+GGG | + | chr3_3:70278969-70278988 | Msa0468590:intron | 35.0% | |
| AAAGGCAAAGAGAAATCTTG+GGG | - | chr3_3:70279045-70279064 | None:intergenic | 35.0% | |
| GAAAGGCAAAGAGAAATCTT+GGG | - | chr3_3:70279046-70279065 | None:intergenic | 35.0% | |
| TGAAAGGCAAAGAGAAATCT+TGG | - | chr3_3:70279047-70279066 | None:intergenic | 35.0% | |
| AGATTTCTCTTTGCCTTTCA+TGG | + | chr3_3:70279047-70279066 | Msa0468590:intron | 35.0% | |
| TGTGCATGTGCCATAAAATA+AGG | + | chr3_3:70279219-70279238 | Msa0468590:intron | 35.0% | |
| GTGCATGTGCCATAAAATAA+GGG | + | chr3_3:70279220-70279239 | Msa0468590:intron | 35.0% | |
| GCAAAATATACGCGAGATAT+GGG | - | chr3_3:70279259-70279278 | None:intergenic | 35.0% | |
| AGCAAAATATACGCGAGATA+TGG | - | chr3_3:70279260-70279279 | None:intergenic | 35.0% | |
| GCTATTACTAGTAGGCTATT+TGG | + | chr3_3:70279431-70279450 | Msa0468590:intron | 35.0% | |
| AGGTAACTAAGATCAGTCAA+TGG | + | chr3_3:70279660-70279679 | Msa0468590:intron | 35.0% | |
| TATATGCAGTTGAAGCAGTA+AGG | - | chr3_3:70279708-70279727 | None:intergenic | 35.0% | |
| !! | CTTAATTTGCAGCAGTTACT+TGG | + | chr3_3:70279754-70279773 | Msa0468590:intron | 35.0% |
| GATGGATGCATAGAAAACTT+CGG | + | chr3_3:70279776-70279795 | Msa0468590:CDS | 35.0% | |
| TAGACATGCCTAGTTAAATC+TGG | - | chr3_3:70280009-70280028 | None:intergenic | 35.0% | |
| TTTACAGTGGGCAATACTTA+TGG | - | chr3_3:70280102-70280121 | None:intergenic | 35.0% | |
| ! | TTTGTGAGCTAGTTTACAGT+GGG | - | chr3_3:70280114-70280133 | None:intergenic | 35.0% |
| ! | TCTAGAATGATCAGAAGTCT+TGG | + | chr3_3:70280232-70280251 | Msa0468590:intron | 35.0% |
| CTAACAAAGGATGTCTATGA+CGG | - | chr3_3:70280309-70280328 | None:intergenic | 35.0% | |
| ! | ACTATCTGAAACCGAACTTT+GGG | + | chr3_3:70280393-70280412 | Msa0468590:CDS | 35.0% |
| AGAAAATCTTTCGAAGCAGT+TGG | + | chr3_3:70280461-70280480 | Msa0468590:CDS | 35.0% | |
| GAAAATCTTTCGAAGCAGTT+GGG | + | chr3_3:70280462-70280481 | Msa0468590:CDS | 35.0% | |
| ! | ATGGAAAATGATGGTGTTAG+TGG | - | chr3_3:70280590-70280609 | None:intergenic | 35.0% |
| TCAACAGAGATGGAAAATGA+TGG | - | chr3_3:70280599-70280618 | None:intergenic | 35.0% | |
| TACTGACAATAAAAAGGAGG+AGG | + | chr3_3:70280979-70280998 | Msa0468590:CDS | 35.0% | |
| !!! | CTTTTTTCTCATGAGATGCA+TGG | - | chr3_3:70281017-70281036 | None:intergenic | 35.0% |
| AGATTCTCCAGATATTTCAC+CGG | + | chr3_3:70281471-70281490 | Msa0468590:intron | 35.0% | |
| AAGAAAAGAATGAATGAGGG+AGG | + | chr3_3:70281539-70281558 | Msa0468590:CDS | 35.0% | |
| ACTTTCAGTTCTATACACTG+TGG | + | chr3_3:70282329-70282348 | Msa0468590:three_prime_UTR | 35.0% | |
| ! | AACTGACTCCCATTAGTGTT+GGG | - | chr3_3:70276609-70276628 | None:intergenic | 40.0% |
| ! | AAACTGACTCCCATTAGTGT+TGG | - | chr3_3:70276610-70276629 | None:intergenic | 40.0% |
| !!! | ACCCAAGCTTAGTGGATTTT+GGG | - | chr3_3:70276692-70276711 | None:intergenic | 40.0% |
| TCTAATAGACCCAAGCTTAG+TGG | - | chr3_3:70276700-70276719 | None:intergenic | 40.0% | |
| ATGCTCAACATTGGAACTTG+GGG | - | chr3_3:70276752-70276771 | None:intergenic | 40.0% | |
| GATGCTCAACATTGGAACTT+GGG | - | chr3_3:70276753-70276772 | None:intergenic | 40.0% | |
| AGATGCTCAACATTGGAACT+TGG | - | chr3_3:70276754-70276773 | None:intergenic | 40.0% | |
| !! | GTATTTGGCCAAGTATTGGA+AGG | + | chr3_3:70276896-70276915 | Msa0468590:intron | 40.0% |
| !! | TGTTAGGTTGATTGAACCAC+AGG | + | chr3_3:70276928-70276947 | Msa0468590:intron | 40.0% |
| AGATTGTGGTTATCAGTGAC+TGG | + | chr3_3:70276955-70276974 | Msa0468590:intron | 40.0% | |
| ! | CTCTTTATTTCTTGCTGCTG+AGG | + | chr3_3:70277020-70277039 | Msa0468590:intron | 40.0% |
| ! | TTTATTTCTTGCTGCTGAGG+AGG | + | chr3_3:70277023-70277042 | Msa0468590:intron | 40.0% |
| AGGAAGGTAGAGAACTCATT+TGG | - | chr3_3:70277089-70277108 | None:intergenic | 40.0% | |
| AATAGGTGGCAAGAGTTTGT+AGG | - | chr3_3:70277128-70277147 | None:intergenic | 40.0% | |
| GGGAGATTTCAAATCCTACA+TGG | + | chr3_3:70277188-70277207 | Msa0468590:intron | 40.0% | |
| ! | CTGCAATTTGGCTTAACTTG+AGG | - | chr3_3:70277223-70277242 | None:intergenic | 40.0% |
| ! | CTAGCACTAGTCTGCAAAAT+TGG | + | chr3_3:70277321-70277340 | Msa0468590:intron | 40.0% |
| AGATGAACCCTGAACATCAA+CGG | - | chr3_3:70277360-70277379 | None:intergenic | 40.0% | |
| TTAAGCTGTCTTGTGGTACA+TGG | + | chr3_3:70277466-70277485 | Msa0468590:intron | 40.0% | |
| ! | CTTTTGATCCAAGTGGAACT+TGG | - | chr3_3:70277750-70277769 | None:intergenic | 40.0% |
| CAGGGTATAAAGCTCATTTC+TGG | + | chr3_3:70278550-70278569 | Msa0468590:intron | 40.0% | |
| ATGGATAACTTTGTGGGTGT+GGG | - | chr3_3:70278585-70278604 | None:intergenic | 40.0% | |
| TGTTACATCCACAACCAGTT+AGG | + | chr3_3:70278939-70278958 | Msa0468590:intron | 40.0% | |
| ATCAAACACCTAACTGGTTG+TGG | - | chr3_3:70278950-70278969 | None:intergenic | 40.0% | |
| ACACAAGAAGCTGTAAAAGG+GGG | + | chr3_3:70278970-70278989 | Msa0468590:intron | 40.0% | |
| ATAATGTGACCATTCTCGTG+AGG | + | chr3_3:70279000-70279019 | Msa0468590:intron | 40.0% | |
| TAATGTGACCATTCTCGTGA+GGG | + | chr3_3:70279001-70279020 | Msa0468590:intron | 40.0% | |
| CTGAAGAAAACTTCCGTTGT+TGG | + | chr3_3:70279111-70279130 | Msa0468590:intron | 40.0% | |
| !! | TTCGGTTTCTAGAATCTGAC+CGG | - | chr3_3:70279285-70279304 | None:intergenic | 40.0% |
| TGCAGCTTGACAAAACAGTA+AGG | - | chr3_3:70279370-70279389 | None:intergenic | 40.0% | |
| TTTGTCAAGCTGCACATGAT+CGG | + | chr3_3:70279376-70279395 | Msa0468590:intron | 40.0% | |
| ACTAGTAATAGCTACCGTGT+GGG | - | chr3_3:70279423-70279442 | None:intergenic | 40.0% | |
| TACTAGTAATAGCTACCGTG+TGG | - | chr3_3:70279424-70279443 | None:intergenic | 40.0% | |
| ACACGGTAGCTATTACTAGT+AGG | + | chr3_3:70279423-70279442 | Msa0468590:intron | 40.0% | |
| ! | GACATAAGCAGGTAGCTTTA+TGG | + | chr3_3:70279511-70279530 | Msa0468590:intron | 40.0% |
| ATTTGCAGCAGTTACTTGGA+TGG | + | chr3_3:70279758-70279777 | Msa0468590:intron | 40.0% | |
| ! | GTTTGTGAGCTAGTTTACAG+TGG | - | chr3_3:70280115-70280134 | None:intergenic | 40.0% |
| ! | CACTATCTGAAACCGAACTT+TGG | + | chr3_3:70280392-70280411 | Msa0468590:CDS | 40.0% |
| ! | TATTTTCCGCTCCCAAAGTT+CGG | - | chr3_3:70280407-70280426 | None:intergenic | 40.0% |
| AGTAGACGAGGAAGAAGATA+AGG | + | chr3_3:70280496-70280515 | Msa0468590:CDS | 40.0% | |
| TTCCTAGCAATTGGAACTCT+TGG | + | chr3_3:70280545-70280564 | Msa0468590:CDS | 40.0% | |
| AACCAAGAGTTCCAATTGCT+AGG | - | chr3_3:70280550-70280569 | None:intergenic | 40.0% | |
| AGCAATTGGAACTCTTGGTT+TGG | + | chr3_3:70280550-70280569 | Msa0468590:CDS | 40.0% | |
| !! | TGGAACTCTTGGTTTGGAAT+CGG | + | chr3_3:70280556-70280575 | Msa0468590:CDS | 40.0% |
| ! | AATGATGGTGTTAGTGGTGA+TGG | - | chr3_3:70280584-70280603 | None:intergenic | 40.0% |
| ! | TCCATGACTATTTCTCTCTG+CGG | - | chr3_3:70280753-70280772 | None:intergenic | 40.0% |
| AAACTCCATTTGTCCACTTC+AGG | + | chr3_3:70280790-70280809 | Msa0468590:CDS | 40.0% | |
| AACTCCATTTGTCCACTTCA+GGG | + | chr3_3:70280791-70280810 | Msa0468590:CDS | 40.0% | |
| ATATCCCTGAAGTGGACAAA+TGG | - | chr3_3:70280798-70280817 | None:intergenic | 40.0% | |
| GAGATGCATGGCAGATTTAT+TGG | - | chr3_3:70281005-70281024 | None:intergenic | 40.0% | |
| AGTTGAATCAACAGAGGTCT+GGG | - | chr3_3:70281071-70281090 | None:intergenic | 40.0% | |
| AAGTTGAATCAACAGAGGTC+TGG | - | chr3_3:70281072-70281091 | None:intergenic | 40.0% | |
| TGCTGAAGTTGAATCAACAG+AGG | - | chr3_3:70281077-70281096 | None:intergenic | 40.0% | |
| TCCAAGATTCATGTGCAACT+TGG | + | chr3_3:70281182-70281201 | Msa0468590:intron | 40.0% | |
| GAACTTTCCGGTGAAATATC+TGG | - | chr3_3:70281481-70281500 | None:intergenic | 40.0% | |
| !! | GATTTTCAGGGTGAACTTTC+CGG | - | chr3_3:70281493-70281512 | None:intergenic | 40.0% |
| ! | CTGCACATGTTGGATTTTCA+GGG | - | chr3_3:70281505-70281524 | None:intergenic | 40.0% |
| ! | TCTGCACATGTTGGATTTTC+AGG | - | chr3_3:70281506-70281525 | None:intergenic | 40.0% |
| ! | TCCTTTCCAACTGCTCTTTT+TGG | - | chr3_3:70281611-70281630 | None:intergenic | 40.0% |
| GCAGTTGGAAAGGAAAACAT+AGG | + | chr3_3:70281617-70281636 | Msa0468590:CDS | 40.0% | |
| ACATCTATCTCACTCTGCAT+TGG | + | chr3_3:70281759-70281778 | Msa0468590:intron | 40.0% | |
| GAAATGAAAACTCAAGCGCA+TGG | + | chr3_3:70281869-70281888 | Msa0468590:intron | 40.0% | |
| !! | CTTAGTGTTGGAGCTCTAAA+AGG | + | chr3_3:70281924-70281943 | Msa0468590:exon | 40.0% |
| !! | TTGGAGCTCTAAAAGGCAAA+GGG | + | chr3_3:70281931-70281950 | Msa0468590:exon | 40.0% |
| !! | AAGAGTGTTAAGAGTCTGTC+CGG | + | chr3_3:70282124-70282143 | Msa0468590:three_prime_UTR | 40.0% |
| CATCCTTGTGAAACCATATC+CGG | - | chr3_3:70282146-70282165 | None:intergenic | 40.0% | |
| TGCCCAAAATCCACTAAGCT+TGG | + | chr3_3:70276687-70276706 | Msa0468590:intron | 45.0% | |
| GCCCAAAATCCACTAAGCTT+GGG | + | chr3_3:70276688-70276707 | Msa0468590:intron | 45.0% | |
| !!! | GACCCAAGCTTAGTGGATTT+TGG | - | chr3_3:70276693-70276712 | None:intergenic | 45.0% |
| TCAACATTGGAACTTGGGGA+AGG | - | chr3_3:70276748-70276767 | None:intergenic | 45.0% | |
| TGTCCTTGCCTTCCAATACT+TGG | - | chr3_3:70276907-70276926 | None:intergenic | 45.0% | |
| TGGAAGGCAAGGACATTGTT+AGG | + | chr3_3:70276912-70276931 | Msa0468590:intron | 45.0% | |
| TAACCACAATCTGTGTCCTG+TGG | - | chr3_3:70276947-70276966 | None:intergenic | 45.0% | |
| TGAGGATACTCTACCCATGT+AGG | - | chr3_3:70277205-70277224 | None:intergenic | 45.0% | |
| ATGACTGCCGTTGATGTTCA+GGG | + | chr3_3:70277350-70277369 | Msa0468590:intron | 45.0% | |
| TTGGCATGAAACGGAAGAAG+AGG | - | chr3_3:70277384-70277403 | None:intergenic | 45.0% | |
| !! | TCAGGCTTTAAGCTGTCTTG+TGG | + | chr3_3:70277459-70277478 | Msa0468590:intron | 45.0% |
| ACGGTGATGCCCTTATTGAT+AGG | - | chr3_3:70277667-70277686 | None:intergenic | 45.0% | |
| ACGCTCAGCACTATTAGGTT+TGG | - | chr3_3:70277707-70277726 | None:intergenic | 45.0% | |
| TCTACAGTACTACTAGGTCC+AGG | + | chr3_3:70278289-70278308 | Msa0468590:intron | 45.0% | |
| CTACAGTACTACTAGGTCCA+GGG | + | chr3_3:70278290-70278309 | Msa0468590:intron | 45.0% | |
| TACAGTACTACTAGGTCCAG+GGG | + | chr3_3:70278291-70278310 | Msa0468590:intron | 45.0% | |
| CATATATTACCCGAATCCCC+TGG | - | chr3_3:70278310-70278329 | None:intergenic | 45.0% | |
| !! | ATTTGCAGCTAGTGGGTTTC+AGG | + | chr3_3:70278531-70278550 | Msa0468590:intron | 45.0% |
| !! | TTTGCAGCTAGTGGGTTTCA+GGG | + | chr3_3:70278532-70278551 | Msa0468590:intron | 45.0% |
| TGGATAACTTTGTGGGTGTG+GGG | - | chr3_3:70278584-70278603 | None:intergenic | 45.0% | |
| GATGGATAACTTTGTGGGTG+TGG | - | chr3_3:70278586-70278605 | None:intergenic | 45.0% | |
| AATGTGACCATTCTCGTGAG+GGG | + | chr3_3:70279002-70279021 | Msa0468590:intron | 45.0% | |
| TTCTCTTTGCCTTTCATGGC+TGG | + | chr3_3:70279051-70279070 | Msa0468590:intron | 45.0% | |
| TGGATATCACACGCCAACAA+CGG | - | chr3_3:70279127-70279146 | None:intergenic | 45.0% | |
| ATCCATTGCCTGAAGATTGC+TGG | + | chr3_3:70279142-70279161 | Msa0468590:intron | 45.0% | |
| TCTATCGGTGTGTATCACTG+TGG | + | chr3_3:70279196-70279215 | Msa0468590:intron | 45.0% | |
| ! | CTCGCGTATATTTTGCTTCC+CGG | + | chr3_3:70279263-70279282 | Msa0468590:intron | 45.0% |
| !! | TCGGTTTCTAGAATCTGACC+GGG | - | chr3_3:70279284-70279303 | None:intergenic | 45.0% |
| CGGATAGGTGAAGATTGATC+AGG | + | chr3_3:70279396-70279415 | Msa0468590:intron | 45.0% | |
| AAGATTGATCAGGACCCACA+CGG | + | chr3_3:70279406-70279425 | Msa0468590:intron | 45.0% | |
| CACTGAACCTTTCAAAGACC+TGG | + | chr3_3:70279807-70279826 | Msa0468590:CDS | 45.0% | |
| AAAATAGCTTACCAGCGACC+AGG | - | chr3_3:70279828-70279847 | None:intergenic | 45.0% | |
| ATGGACGGTGATATATGCGT+TGG | - | chr3_3:70280083-70280102 | None:intergenic | 45.0% | |
| CAGTGGGCAATACTTATGGA+CGG | - | chr3_3:70280098-70280117 | None:intergenic | 45.0% | |
| CCATGAACTCAAGTGGCATT+CGG | - | chr3_3:70280278-70280297 | None:intergenic | 45.0% | |
| ! | ATGCCACTTGAGTTCATGGT+TGG | + | chr3_3:70280279-70280298 | Msa0468590:intron | 45.0% |
| CAAAGGATGTCTATGACGGT+TGG | - | chr3_3:70280305-70280324 | None:intergenic | 45.0% | |
| AGACGAGGAAGAAGATAAGG+AGG | + | chr3_3:70280499-70280518 | Msa0468590:CDS | 45.0% | |
| AGGAAGAAGATAAGGAGGCA+TGG | + | chr3_3:70280504-70280523 | Msa0468590:CDS | 45.0% | |
| ! | GGAAGAAGATAAGGAGGCAT+GGG | + | chr3_3:70280505-70280524 | Msa0468590:CDS | 45.0% |
| ! | GAAGAAGATAAGGAGGCATG+GGG | + | chr3_3:70280506-70280525 | Msa0468590:CDS | 45.0% |
| AGTTCCAATTGCTAGGAAGC+CGG | - | chr3_3:70280543-70280562 | None:intergenic | 45.0% | |
| GATCAGCTTCAGCTCATTCT+CGG | - | chr3_3:70280654-70280673 | None:intergenic | 45.0% | |
| ACCGCAGAGAGAAATAGTCA+TGG | + | chr3_3:70280749-70280768 | Msa0468590:CDS | 45.0% | |
| CCAAAGAGATATCCCTGAAG+TGG | - | chr3_3:70280806-70280825 | None:intergenic | 45.0% | |
| CCACTTCAGGGATATCTCTT+TGG | + | chr3_3:70280803-70280822 | Msa0468590:CDS | 45.0% | |
| GAGAAGCAAACAAGCAGATC+AGG | + | chr3_3:70280931-70280950 | Msa0468590:CDS | 45.0% | |
| GCAGATCAGGACAATCTTGT+TGG | + | chr3_3:70280944-70280963 | Msa0468590:CDS | 45.0% | |
| GGACAATCTTGTTGGAGCAA+AGG | + | chr3_3:70280952-70280971 | Msa0468590:CDS | 45.0% | |
| GCCAAGTTGCACATGAATCT+TGG | - | chr3_3:70281186-70281205 | None:intergenic | 45.0% | |
| TCGTACTTCTCTGCACATGT+TGG | - | chr3_3:70281515-70281534 | None:intergenic | 45.0% | |
| GCCAAAAAGAGCAGTTGGAA+AGG | + | chr3_3:70281607-70281626 | Msa0468590:CDS | 45.0% | |
| ACATAGGACAGTGCAAGAAG+AGG | + | chr3_3:70281633-70281652 | Msa0468590:CDS | 45.0% | |
| AGGCAACTCCAAATTACCCT+TGG | + | chr3_3:70281653-70281672 | Msa0468590:CDS | 45.0% | |
| CAACTCCAAATTACCCTTGG+CGG | + | chr3_3:70281656-70281675 | Msa0468590:CDS | 45.0% | |
| CATCTGAGAATATGGAGCAG+TGG | + | chr3_3:70281693-70281712 | Msa0468590:CDS | 45.0% | |
| GCAGTGGATCAAAACAGATG+TGG | + | chr3_3:70281709-70281728 | Msa0468590:CDS | 45.0% | |
| ! | CAAGCGCATGGCTAAGATTT+TGG | + | chr3_3:70281881-70281900 | Msa0468590:intron | 45.0% |
| !! | GTTGGAGCTCTAAAAGGCAA+AGG | + | chr3_3:70281930-70281949 | Msa0468590:exon | 45.0% |
| TCTAAAAGGCAAAGGGCGAA+CGG | + | chr3_3:70281938-70281957 | Msa0468590:exon | 45.0% | |
| GTTAAGAGTCTGTCCGGATA+TGG | + | chr3_3:70282130-70282149 | Msa0468590:three_prime_UTR | 45.0% | |
| TGTCCGGATATGGTTTCACA+AGG | + | chr3_3:70282140-70282159 | Msa0468590:three_prime_UTR | 45.0% | |
| !!! | AAATTTTTTTTTTATACTTT+TGG | - | chr3_3:70278688-70278707 | None:intergenic | 5.0% |
| ACATGTCTCTGATCCAGCCA+CGG | - | chr3_3:70276875-70276894 | None:intergenic | 50.0% | |
| !! | TGGCCAAGTATTGGAAGGCA+AGG | + | chr3_3:70276901-70276920 | Msa0468590:intron | 50.0% |
| GAACCACAGGACACAGATTG+TGG | + | chr3_3:70276941-70276960 | Msa0468590:intron | 50.0% | |
| GATGACTGCCGTTGATGTTC+AGG | + | chr3_3:70277349-70277368 | Msa0468590:intron | 50.0% | |
| ! | ACCTAATAGTGCTGAGCGTG+AGG | + | chr3_3:70277708-70277727 | Msa0468590:intron | 50.0% |
| ! | CCTAATAGTGCTGAGCGTGA+GGG | + | chr3_3:70277709-70277728 | Msa0468590:intron | 50.0% |
| ACTACTAGGTCCAGGGGATT+CGG | + | chr3_3:70278297-70278316 | Msa0468590:intron | 50.0% | |
| ATGTGACCATTCTCGTGAGG+GGG | + | chr3_3:70279003-70279022 | Msa0468590:intron | 50.0% | |
| CATGTACGACCAGTGACACA+TGG | - | chr3_3:70279079-70279098 | None:intergenic | 50.0% | |
| ! | CATGTGTCACTGGTCGTACA+TGG | + | chr3_3:70279077-70279096 | Msa0468590:intron | 50.0% |
| TGCCAGCAATCTTCAGGCAA+TGG | - | chr3_3:70279147-70279166 | None:intergenic | 50.0% | |
| CGTGTATGCCAGCAATCTTC+AGG | - | chr3_3:70279153-70279172 | None:intergenic | 50.0% | |
| CAAGCTGCACATGATCGGAT+AGG | + | chr3_3:70279381-70279400 | Msa0468590:intron | 50.0% | |
| ATCAGAAGTCTTGGCGAGTG+AGG | + | chr3_3:70280241-70280260 | Msa0468590:intron | 50.0% | |
| TCAGAAGTCTTGGCGAGTGA+GGG | + | chr3_3:70280242-70280261 | Msa0468590:intron | 50.0% | |
| ! | CCGAATGCCACTTGAGTTCA+TGG | + | chr3_3:70280275-70280294 | Msa0468590:intron | 50.0% |
| TGGCCAACCATGAACTCAAG+TGG | - | chr3_3:70280285-70280304 | None:intergenic | 50.0% | |
| TTTGTGTTGCGTTTCAGGGC+AGG | + | chr3_3:70280337-70280356 | Msa0468590:intron | 50.0% | |
| ! | GCAGGCAACATCAGTTGATG+AGG | + | chr3_3:70280355-70280374 | Msa0468590:CDS | 50.0% |
| ! | CTGAAACCGAACTTTGGGAG+CGG | + | chr3_3:70280398-70280417 | Msa0468590:CDS | 50.0% |
| TCTTTCGAAGCAGTTGGGAG+TGG | + | chr3_3:70280467-70280486 | Msa0468590:CDS | 50.0% | |
| TTCCAATTGCTAGGAAGCCG+GGG | - | chr3_3:70280541-70280560 | None:intergenic | 50.0% | |
| GTTCCAATTGCTAGGAAGCC+GGG | - | chr3_3:70280542-70280561 | None:intergenic | 50.0% | |
| TTCTCTCTGCGGTGCTTACA+TGG | - | chr3_3:70280742-70280761 | None:intergenic | 50.0% | |
| ACACAGCCAGAGAACAACAC+TGG | + | chr3_3:70280895-70280914 | Msa0468590:CDS | 50.0% | |
| CACAGCCAGAGAACAACACT+GGG | + | chr3_3:70280896-70280915 | Msa0468590:CDS | 50.0% | |
| ! | AGAGGTCTGGGAAGAAGCAT+GGG | - | chr3_3:70281059-70281078 | None:intergenic | 50.0% |
| CCCTCACGCTCAGCACTATT+AGG | - | chr3_3:70277712-70277731 | None:intergenic | 55.0% | |
| CTACTAGGTCCAGGGGATTC+GGG | + | chr3_3:70278298-70278317 | Msa0468590:intron | 55.0% | |
| CACATGGCACCAGCCATGAA+AGG | - | chr3_3:70279063-70279082 | None:intergenic | 55.0% | |
| CCAGCGACCAGGTCTTTGAA+AGG | - | chr3_3:70279817-70279836 | None:intergenic | 55.0% | |
| CCTTTCAAAGACCTGGTCGC+TGG | + | chr3_3:70279814-70279833 | Msa0468590:CDS | 55.0% | |
| GAGTGGTAGAGCAGTAGACG+AGG | + | chr3_3:70280484-70280503 | Msa0468590:CDS | 55.0% | |
| ! | GAAGATAAGGAGGCATGGGG+TGG | + | chr3_3:70280509-70280528 | Msa0468590:CDS | 55.0% |
| ! | GCATGGGGTGGTATTTTCCC+CGG | + | chr3_3:70280521-70280540 | Msa0468590:CDS | 55.0% |
| TTCCCCGGCTTCCTAGCAAT+TGG | + | chr3_3:70280536-70280555 | Msa0468590:CDS | 55.0% | |
| ! | GCTCACCCAGTGTTGTTCTC+TGG | - | chr3_3:70280904-70280923 | None:intergenic | 55.0% |
| ! | GAGGTCTGGGAAGAAGCATG+GGG | - | chr3_3:70281058-70281077 | None:intergenic | 55.0% |
| CAGAGGTCTGGGAAGAAGCA+TGG | - | chr3_3:70281060-70281079 | None:intergenic | 55.0% | |
| CTCCAAATTACCCTTGGCGG+TGG | + | chr3_3:70281659-70281678 | Msa0468590:CDS | 55.0% | |
| TGCCACCGCCAAGGGTAATT+TGG | - | chr3_3:70281664-70281683 | None:intergenic | 55.0% | |
| ATCTTCACTGCCACCGCCAA+GGG | - | chr3_3:70281672-70281691 | None:intergenic | 55.0% | |
| AATCTTCACTGCCACCGCCA+AGG | - | chr3_3:70281673-70281692 | None:intergenic | 55.0% | |
| AGGCAAAGGGCGAACGGAAT+TGG | + | chr3_3:70281944-70281963 | Msa0468590:three_prime_UTR | 55.0% | |
| GGCAAAGGGCGAACGGAATT+GGG | + | chr3_3:70281945-70281964 | Msa0468590:three_prime_UTR | 55.0% | |
| GATGACATCGGCAGACACCG+TGG | + | chr3_3:70276855-70276874 | Msa0468590:intron | 60.0% | |
| GCAGATCCCCCTCACGAGAA+TGG | - | chr3_3:70279012-70279031 | None:intergenic | 60.0% | |
| TCTCGTGAGGGGGATCTGCT+AGG | + | chr3_3:70279013-70279032 | Msa0468590:intron | 60.0% | |
| !! | TGGCTGGTGCCATGTGTCAC+TGG | + | chr3_3:70279067-70279086 | Msa0468590:intron | 60.0% |
| ACATCGGCAGACACCGTGGC+TGG | + | chr3_3:70276859-70276878 | Msa0468590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70276605 | 70282352 | 70276605 | ID=Msa0468590;Name=Msa0468590 |
| chr3_3 | mRNA | 70276605 | 70282352 | 70276605 | ID=Msa0468590-mRNA-1;Parent=Msa0468590;Name=Msa0468590-mRNA-1;_AED=0.12;_eAED=0.12;_QI=111|1|1|1|0.6|0.5|6|410|373 |
| chr3_3 | exon | 70276605 | 70276646 | 70276605 | ID=Msa0468590-mRNA-1:exon:16905;Parent=Msa0468590-mRNA-1 |
| chr3_3 | exon | 70279587 | 70279661 | 70279587 | ID=Msa0468590-mRNA-1:exon:16906;Parent=Msa0468590-mRNA-1 |
| chr3_3 | exon | 70279766 | 70279835 | 70279766 | ID=Msa0468590-mRNA-1:exon:16907;Parent=Msa0468590-mRNA-1 |
| chr3_3 | exon | 70280354 | 70281117 | 70280354 | ID=Msa0468590-mRNA-1:exon:16908;Parent=Msa0468590-mRNA-1 |
| chr3_3 | exon | 70281473 | 70281734 | 70281473 | ID=Msa0468590-mRNA-1:exon:16909;Parent=Msa0468590-mRNA-1 |
| chr3_3 | exon | 70281923 | 70282352 | 70281923 | ID=Msa0468590-mRNA-1:exon:16910;Parent=Msa0468590-mRNA-1 |
| chr3_3 | five_prime_UTR | 70276605 | 70276646 | 70276605 | ID=Msa0468590-mRNA-1:five_prime_utr;Parent=Msa0468590-mRNA-1 |
| chr3_3 | five_prime_UTR | 70279587 | 70279655 | 70279587 | ID=Msa0468590-mRNA-1:five_prime_utr;Parent=Msa0468590-mRNA-1 |
| chr3_3 | CDS | 70279656 | 70279661 | 70279656 | ID=Msa0468590-mRNA-1:cds;Parent=Msa0468590-mRNA-1 |
| chr3_3 | CDS | 70279766 | 70279835 | 70279766 | ID=Msa0468590-mRNA-1:cds;Parent=Msa0468590-mRNA-1 |
| chr3_3 | CDS | 70280354 | 70281117 | 70280354 | ID=Msa0468590-mRNA-1:cds;Parent=Msa0468590-mRNA-1 |
| chr3_3 | CDS | 70281473 | 70281734 | 70281473 | ID=Msa0468590-mRNA-1:cds;Parent=Msa0468590-mRNA-1 |
| chr3_3 | CDS | 70281923 | 70281942 | 70281923 | ID=Msa0468590-mRNA-1:cds;Parent=Msa0468590-mRNA-1 |
| chr3_3 | three_prime_UTR | 70281943 | 70282352 | 70281943 | ID=Msa0468590-mRNA-1:three_prime_utr;Parent=Msa0468590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
