AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465270 MtrunA17_Chr4g0076251 89.542 306 16 1 1 290 1 306 1.73e-179 507
Msa1465270 MtrunA17_Chr2g0290411 69.550 289 72 1 18 290 5 293 1.97e-131 384
Msa1465270 MtrunA17_Chr1g0161371 56.383 282 107 1 25 290 51 332 6.11e-102 310
Msa1465270 MtrunA17_Chr8g0391771 56.028 282 108 1 25 290 56 337 2.87e-100 306
Msa1465270 MtrunA17_Chr8g0344311 56.738 282 106 1 25 290 52 333 3.86e-94 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465270 AT1G68060.1 56.383 282 107 1 25 290 65 346 3.01e-102 311
Msa1465270 AT1G24764.1 56.028 282 108 1 25 290 73 354 1.36e-101 310
Msa1465270 AT1G14840.1 55.674 282 109 1 25 290 48 329 1.68e-101 309
Msa1465270 AT2G01750.1 55.674 282 109 1 25 290 72 353 3.52e-101 309
Msa1465270 AT2G01750.2 55.674 282 109 1 25 290 72 353 3.57e-101 309
Msa1465270 AT1G24764.3 56.028 282 108 1 25 290 132 413 2.09e-100 309
Msa1465270 AT4G17220.1 58.363 281 101 1 26 290 6 286 5.20e-97 295
Msa1465270 AT1G14840.2 54.307 267 106 1 25 275 48 314 4.23e-90 279
Msa1465270 AT1G24764.2 59.204 201 66 1 106 290 1 201 1.84e-75 238

Find 64 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAGATTTCTCTAAAATTT+TGG 0.168689 tig0045108:-3744 Msa1465270:intergenic
ATTTCCCTTTCCCTCACTTT+TGG 0.259668 tig0045108:-1895 Msa1465270:intergenic
TAATTAAAATACCTCTTCTA+TGG 0.278017 tig0045108:-2736 Msa1465270:intergenic
TTTCAACTTCAAGAATCTTT+TGG 0.283060 tig0045108:-3769 Msa1465270:intergenic
AAAGCTTAGCCAAACTATTC+AGG 0.293484 tig0045108:+3790 Msa1465270:CDS
GAACAGAATCGTCATCCTTT+TGG 0.300614 tig0045108:-3280 Msa1465270:intergenic
GCAATTCAGAAACTTGTCTT+TGG 0.311316 tig0045108:-3868 Msa1465270:intergenic
CCTCAAGTTCCTGAATAGTT+TGG 0.312176 tig0045108:-3799 Msa1465270:intergenic
TTCACCATTTGCAATTCTAT+TGG 0.325874 tig0045108:-4032 Msa1465270:intergenic
TTCATAGATAACAGCACTTC+AGG 0.334892 tig0045108:+3463 Msa1465270:intron
GAGAAATGAAGTCGGTAAAC+TGG 0.378705 tig0045108:+3015 Msa1465270:CDS
CCGCAGAAGCAACACTTAGA+AGG 0.382381 tig0045108:+3246 Msa1465270:CDS
TCTTCTAGCCATTGCTTGAC+AGG 0.383618 tig0045108:-4091 Msa1465270:intergenic
TAAACAAAGAACCTTTGAAT+TGG 0.391122 tig0045108:-2002 Msa1465270:intergenic
GCTAGCAAGGGTAAAAGTTT+CGG 0.430627 tig0045108:+4009 Msa1465270:CDS
GGGGCAATGGCGTTATCAAT+TGG 0.440234 tig0045108:-3302 Msa1465270:intergenic
ATAGGGTCTGAGAGGACAAC+TGG 0.454257 tig0045108:-1952 Msa1465270:intergenic
GTGAGGTGTGAAAAGCAATA+TGG 0.458438 tig0045108:+1919 Msa1465270:CDS
AAGCTGAGATTACAATGTAT+AGG 0.477680 tig0045108:+3330 Msa1465270:CDS
CACTAGAGAGGGAGCTAGCA+AGG 0.481581 tig0045108:+3996 Msa1465270:CDS
AAAAGTGAGGGAAAGGGAAA+TGG 0.487123 tig0045108:+1897 Msa1465270:CDS
AGAGGATCGTCTTAAGCAAA+AGG 0.497139 tig0045108:+3057 Msa1465270:CDS
CCTCTCAGACCCTATGGTGT+TGG 0.497422 tig0045108:+1960 Msa1465270:CDS
CGATTAATCTCCAACACCAT+AGG 0.511794 tig0045108:-1970 Msa1465270:intergenic
AGTTGTCCTCTCAGACCCTA+TGG 0.511922 tig0045108:+1954 Msa1465270:CDS
GACTGAAGCTCTGAAGGATA+AGG 0.515576 tig0045108:+2713 Msa1465270:CDS
CGTTTGCATAACCAATTCAA+AGG 0.519141 tig0045108:+1991 Msa1465270:CDS
CAATGCCAAAAGTGAGGGAA+AGG 0.521517 tig0045108:+1890 None:intergenic
CTCAGCTTGAAGAGGGGCAA+TGG 0.525958 tig0045108:-3315 Msa1465270:intergenic
TTGTAATCTCAGCTTGAAGA+GGG 0.530115 tig0045108:-3322 Msa1465270:intergenic
CCAAACTATTCAGGAACTTG+AGG 0.536454 tig0045108:+3799 Msa1465270:CDS
AAGGGTGCATGCAAACCAAA+AGG 0.538099 tig0045108:+3265 Msa1465270:CDS
TTTGCAAAGTGCACTAGAGA+AGG 0.539870 tig0045108:+3553 Msa1465270:CDS
CCTTCTAAGTGTTGCTTCTG+CGG 0.541428 tig0045108:-3246 Msa1465270:intergenic
CGCAGAAGCAACACTTAGAA+GGG 0.542238 tig0045108:+3247 Msa1465270:CDS
TCGGCCAATAGAATTGCAAA+TGG 0.544219 tig0045108:+4028 Msa1465270:CDS
GATTAATCTCCAACACCATA+GGG 0.563826 tig0045108:-1969 Msa1465270:intergenic
AGAAGAGAGAAGGATTATGC+AGG 0.567503 tig0045108:+4108 Msa1465270:CDS
AAGGTCGACTGAAGCTCTGA+AGG 0.573607 tig0045108:+2707 Msa1465270:CDS
CCTCCCAATGCCAAAAGTGA+GGG 0.575640 tig0045108:+1885 None:intergenic
AGCAATGGCTAGAAGAGAGA+AGG 0.577331 tig0045108:+4098 Msa1465270:CDS
AATGCCAAAAGTGAGGGAAA+GGG 0.592729 tig0045108:+1891 None:intergenic
TCCTCCCAATGCCAAAAGTG+AGG 0.596299 tig0045108:+1884 None:intergenic
GAGGAAGTCATCTTAGCTAA+CGG 0.600860 tig0045108:+3818 Msa1465270:CDS
GATTACAATGTATAGGAATG+AGG 0.604046 tig0045108:+3337 Msa1465270:CDS
AGGTCATGCCTGTCAAGCAA+TGG 0.604618 tig0045108:+4083 Msa1465270:CDS
ATGAGAAAAGGACACTAGAG+AGG 0.607096 tig0045108:+3984 Msa1465270:CDS
ACTAGAGAGGGAGCTAGCAA+GGG 0.615439 tig0045108:+3997 Msa1465270:CDS
CGAGAGACTTAGAGTTACAG+AGG 0.619933 tig0045108:+3039 Msa1465270:CDS
AGAGTGAAATCAAAGCACTA+AGG 0.626155 tig0045108:+2688 Msa1465270:CDS
GAAGGATAAGGCCATAGAAG+AGG 0.631116 tig0045108:+2725 Msa1465270:CDS
TGGTGAAGCTAATGAGTGGA+AGG 0.633476 tig0045108:+4048 Msa1465270:CDS
TGAGGGAAAGGGAAATGGTG+AGG 0.637716 tig0045108:+1902 Msa1465270:CDS
ATTGTAATCTCAGCTTGAAG+AGG 0.647918 tig0045108:-3323 Msa1465270:intergenic
TGAGAAAAGGACACTAGAGA+GGG 0.660251 tig0045108:+3985 Msa1465270:CDS
GTGTGAAAAGCAATATGGAG+AGG 0.669978 tig0045108:+1924 Msa1465270:CDS
CCAACACCATAGGGTCTGAG+AGG 0.675725 tig0045108:-1960 Msa1465270:intergenic
TTTCAGCTGAGAAATGAAGT+CGG 0.679362 tig0045108:+3007 Msa1465270:intron
GTGGAAGGATGAAAATGACA+AGG 0.684047 tig0045108:+4063 Msa1465270:CDS
AGATGAAAAGAAAAGTGCAA+TGG 0.685087 tig0045108:+3211 Msa1465270:CDS
TGTAATCTCAGCTTGAAGAG+GGG 0.692586 tig0045108:-3321 Msa1465270:intergenic
CAAATGGTGAAGCTAATGAG+TGG 0.695992 tig0045108:+4044 Msa1465270:CDS
GGGTCTGAGAGGACAACTGG+AGG 0.711528 tig0045108:-1949 Msa1465270:intergenic
AAGCATTGCTAGATGCAGAG+AGG 0.719701 tig0045108:+3528 Msa1465270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATACTACAAATTAAT+AGG - tig0045108:2860-2879 Msa1465270:intergenic 10.0%
!! TAATTATACTACAAATTAAT+AGG - tig0045108:2860-2879 Msa1465270:intergenic 10.0%
!!! TTTAAAACTCTAATAAAGAT+TGG - tig0045108:2487-2506 Msa1465270:intergenic 15.0%
!! AATGATTACATAAAGTTATA+AGG - tig0045108:2634-2653 Msa1465270:intergenic 15.0%
!!! TACTTGTATTTTATTAAAGT+AGG + tig0045108:3095-3114 Msa1465270:intron 15.0%
!!! TTTAAAACTCTAATAAAGAT+TGG - tig0045108:2487-2506 Msa1465270:intergenic 15.0%
!! AATGATTACATAAAGTTATA+AGG - tig0045108:2634-2653 Msa1465270:intergenic 15.0%
!!! TACTTGTATTTTATTAAAGT+AGG + tig0045108:3095-3114 Msa1465270:intron 15.0%
!! ATAACTTTATGTAATCATTG+TGG + tig0045108:2635-2654 Msa1465270:intron 20.0%
!! TAATTAAAATACCTCTTCTA+TGG - tig0045108:2739-2758 Msa1465270:intergenic 20.0%
!! ATAACTTTATGTAATCATTG+TGG + tig0045108:2635-2654 Msa1465270:intron 20.0%
!! TAATTAAAATACCTCTTCTA+TGG - tig0045108:2739-2758 Msa1465270:intergenic 20.0%
! TAAACAAAGAACCTTTGAAT+TGG - tig0045108:2005-2024 Msa1465270:intergenic 25.0%
! ATATCCATTCAATACTAGTT+CGG - tig0045108:2376-2395 Msa1465270:intergenic 25.0%
!!! CTGGTCAATACTTTTTTTTT+GGG - tig0045108:2402-2421 Msa1465270:intergenic 25.0%
!!! TCTGGTCAATACTTTTTTTT+TGG - tig0045108:2403-2422 Msa1465270:intergenic 25.0%
! TTGTGTTCAACTTATACTTA+TGG - tig0045108:2577-2596 Msa1465270:intergenic 25.0%
! AATCTATCTATACAAACACA+TGG + tig0045108:2759-2778 Msa1465270:intron 25.0%
! AACATGCATGACATAATTAA+TGG - tig0045108:2815-2834 Msa1465270:intergenic 25.0%
!!! AATAATACGGTTCTAAATTG+AGG - tig0045108:2954-2973 Msa1465270:intergenic 25.0%
! CCATATTAGACTGAATAATA+CGG - tig0045108:2967-2986 Msa1465270:intergenic 25.0%
!! TTCTGCATAAGAATAGATTT+TGG - tig0045108:3170-3189 Msa1465270:intergenic 25.0%
!! TTTCAACTTCAAGAATCTTT+TGG - tig0045108:3772-3791 Msa1465270:intergenic 25.0%
!! TGATATATTGACTGTTTGTT+TGG + tig0045108:3916-3935 Msa1465270:intron 25.0%
!! GGTTTTGCATATAAATTTTC+AGG + tig0045108:3961-3980 Msa1465270:intron 25.0%
!!! TAAATTTTCAGGATGAGAAA+AGG + tig0045108:3972-3991 Msa1465270:intron 25.0%
! TAAACAAAGAACCTTTGAAT+TGG - tig0045108:2005-2024 Msa1465270:intergenic 25.0%
! ATATCCATTCAATACTAGTT+CGG - tig0045108:2376-2395 Msa1465270:intergenic 25.0%
!!! CTGGTCAATACTTTTTTTTT+GGG - tig0045108:2402-2421 Msa1465270:intergenic 25.0%
!!! TCTGGTCAATACTTTTTTTT+TGG - tig0045108:2403-2422 Msa1465270:intergenic 25.0%
! TTGTGTTCAACTTATACTTA+TGG - tig0045108:2577-2596 Msa1465270:intergenic 25.0%
! AATCTATCTATACAAACACA+TGG + tig0045108:2759-2778 Msa1465270:intron 25.0%
! AACATGCATGACATAATTAA+TGG - tig0045108:2815-2834 Msa1465270:intergenic 25.0%
!!! AATAATACGGTTCTAAATTG+AGG - tig0045108:2954-2973 Msa1465270:intergenic 25.0%
! CCATATTAGACTGAATAATA+CGG - tig0045108:2967-2986 Msa1465270:intergenic 25.0%
!! TTCTGCATAAGAATAGATTT+TGG - tig0045108:3170-3189 Msa1465270:intergenic 25.0%
!! TTTCAACTTCAAGAATCTTT+TGG - tig0045108:3772-3791 Msa1465270:intergenic 25.0%
!! TGATATATTGACTGTTTGTT+TGG + tig0045108:3916-3935 Msa1465270:intron 25.0%
!! GGTTTTGCATATAAATTTTC+AGG + tig0045108:3961-3980 Msa1465270:intron 25.0%
!!! TAAATTTTCAGGATGAGAAA+AGG + tig0045108:3972-3991 Msa1465270:intron 25.0%
!!! TTTTTTCTGTTTCCATCATG+AGG + tig0045108:2049-2068 Msa1465270:intron 30.0%
! AGTTTGATTTAGTTTCCATC+TGG + tig0045108:2079-2098 Msa1465270:intron 30.0%
GAAGTCTTTCATATCACATA+CGG - tig0045108:2538-2557 Msa1465270:intergenic 30.0%
TTATACTTATGGTGACTTCT+AGG - tig0045108:2566-2585 Msa1465270:intergenic 30.0%
AAATGAACTATTCAAGTCAG+TGG + tig0045108:2596-2615 Msa1465270:intron 30.0%
! ATAAGCAGCTTTATCCATTA+GGG + tig0045108:2788-2807 Msa1465270:intron 30.0%
ACATAATTAATGGTCCCTAA+TGG - tig0045108:2805-2824 Msa1465270:intergenic 30.0%
CCGTATTATTCAGTCTAATA+TGG + tig0045108:2964-2983 Msa1465270:intron 30.0%
! GAGAGAAAAACTTGCATTTT+AGG - tig0045108:3144-3163 Msa1465270:intergenic 30.0%
! AGATGAAAAGAAAAGTGCAA+TGG + tig0045108:3211-3230 Msa1465270:CDS 30.0%
AAGCTGAGATTACAATGTAT+AGG + tig0045108:3330-3349 Msa1465270:CDS 30.0%
GATTACAATGTATAGGAATG+AGG + tig0045108:3337-3356 Msa1465270:CDS 30.0%
AAATACTACCATTTCCAACA+AGG + tig0045108:3371-3390 Msa1465270:intron 30.0%
AAATGATTCCTTGTTGGAAA+TGG - tig0045108:3382-3401 Msa1465270:intergenic 30.0%
TTTGCAAGGATAGATCAAAA+TGG + tig0045108:3399-3418 Msa1465270:intron 30.0%
TGTTTGTGGTAGTTGTAAAT+TGG - tig0045108:3716-3735 Msa1465270:intergenic 30.0%
AATTTACAACTACCACAAAC+AGG + tig0045108:3715-3734 Msa1465270:intron 30.0%
!!! GCGAGATTTCTCTAAAATTT+TGG - tig0045108:3747-3766 Msa1465270:intergenic 30.0%
! TTTGTTTGGTTGATCTTTTG+TGG + tig0045108:3930-3949 Msa1465270:intron 30.0%
TTCACCATTTGCAATTCTAT+TGG - tig0045108:4035-4054 Msa1465270:intergenic 30.0%
!!! TTTTTTCTGTTTCCATCATG+AGG + tig0045108:2049-2068 Msa1465270:intron 30.0%
! AGTTTGATTTAGTTTCCATC+TGG + tig0045108:2079-2098 Msa1465270:intron 30.0%
GAAGTCTTTCATATCACATA+CGG - tig0045108:2538-2557 Msa1465270:intergenic 30.0%
TTATACTTATGGTGACTTCT+AGG - tig0045108:2566-2585 Msa1465270:intergenic 30.0%
AAATGAACTATTCAAGTCAG+TGG + tig0045108:2596-2615 Msa1465270:intron 30.0%
! ATAAGCAGCTTTATCCATTA+GGG + tig0045108:2788-2807 Msa1465270:intron 30.0%
ACATAATTAATGGTCCCTAA+TGG - tig0045108:2805-2824 Msa1465270:intergenic 30.0%
CCGTATTATTCAGTCTAATA+TGG + tig0045108:2964-2983 Msa1465270:intron 30.0%
! GAGAGAAAAACTTGCATTTT+AGG - tig0045108:3144-3163 Msa1465270:intergenic 30.0%
! AGATGAAAAGAAAAGTGCAA+TGG + tig0045108:3211-3230 Msa1465270:CDS 30.0%
AAGCTGAGATTACAATGTAT+AGG + tig0045108:3330-3349 Msa1465270:CDS 30.0%
GATTACAATGTATAGGAATG+AGG + tig0045108:3337-3356 Msa1465270:CDS 30.0%
AAATACTACCATTTCCAACA+AGG + tig0045108:3371-3390 Msa1465270:intron 30.0%
AAATGATTCCTTGTTGGAAA+TGG - tig0045108:3382-3401 Msa1465270:intergenic 30.0%
TTTGCAAGGATAGATCAAAA+TGG + tig0045108:3399-3418 Msa1465270:intron 30.0%
TGTTTGTGGTAGTTGTAAAT+TGG - tig0045108:3716-3735 Msa1465270:intergenic 30.0%
AATTTACAACTACCACAAAC+AGG + tig0045108:3715-3734 Msa1465270:intron 30.0%
!!! GCGAGATTTCTCTAAAATTT+TGG - tig0045108:3747-3766 Msa1465270:intergenic 30.0%
! TTTGTTTGGTTGATCTTTTG+TGG + tig0045108:3930-3949 Msa1465270:intron 30.0%
TTCACCATTTGCAATTCTAT+TGG - tig0045108:4035-4054 Msa1465270:intergenic 30.0%
GATTAATCTCCAACACCATA+GGG - tig0045108:1972-1991 Msa1465270:intergenic 35.0%
CGTTTGCATAACCAATTCAA+AGG + tig0045108:1991-2010 Msa1465270:CDS 35.0%
AAACTCAATACTCCTCATGA+TGG - tig0045108:2064-2083 Msa1465270:intergenic 35.0%
TACTAGTTCGGCATAAAACA+AGG - tig0045108:2364-2383 Msa1465270:intergenic 35.0%
! TATGCCGAACTAGTATTGAA+TGG + tig0045108:2369-2388 Msa1465270:intron 35.0%
!! TTATGGTGACTTCTAGGATA+AGG - tig0045108:2560-2579 Msa1465270:intergenic 35.0%
CATTGTGGCAGAAAAAGTTA+AGG + tig0045108:2650-2669 Msa1465270:intron 35.0%
! AGAGTGAAATCAAAGCACTA+AGG + tig0045108:2688-2707 Msa1465270:CDS 35.0%
! CATAAGCAGCTTTATCCATT+AGG + tig0045108:2787-2806 Msa1465270:intron 35.0%
!! TTCCGCATCGTTCTAAATTT+TGG + tig0045108:2903-2922 Msa1465270:intron 35.0%
! GACCAAAATTTAGAACGATG+CGG - tig0045108:2908-2927 Msa1465270:intergenic 35.0%
CTTCATTTCTCAGCTGAAAA+TGG - tig0045108:3006-3025 Msa1465270:intergenic 35.0%
TTTCAGCTGAGAAATGAAGT+CGG + tig0045108:3007-3026 Msa1465270:intron 35.0%
! AAGCAAAAGGTACACTGATT+TGG + tig0045108:3070-3089 Msa1465270:intron 35.0%
! GGTTCTAGCAATCTTCAATA+TGG - tig0045108:3123-3142 Msa1465270:intergenic 35.0%
TTGTAATCTCAGCTTGAAGA+GGG - tig0045108:3325-3344 Msa1465270:intergenic 35.0%
ATTGTAATCTCAGCTTGAAG+AGG - tig0045108:3326-3345 Msa1465270:intergenic 35.0%
TTCATAGATAACAGCACTTC+AGG + tig0045108:3463-3482 Msa1465270:intron 35.0%
! CAACTTCAAGAATCTTTTGG+CGG - tig0045108:3769-3788 Msa1465270:intergenic 35.0%
AAAGCTTAGCCAAACTATTC+AGG + tig0045108:3790-3809 Msa1465270:CDS 35.0%
GCAATTCAGAAACTTGTCTT+TGG - tig0045108:3871-3890 Msa1465270:intergenic 35.0%
! TGATCTTTTGTGGTAACTTG+TGG + tig0045108:3940-3959 Msa1465270:intron 35.0%
GATTAATCTCCAACACCATA+GGG - tig0045108:1972-1991 Msa1465270:intergenic 35.0%
CGTTTGCATAACCAATTCAA+AGG + tig0045108:1991-2010 Msa1465270:CDS 35.0%
AAACTCAATACTCCTCATGA+TGG - tig0045108:2064-2083 Msa1465270:intergenic 35.0%
TACTAGTTCGGCATAAAACA+AGG - tig0045108:2364-2383 Msa1465270:intergenic 35.0%
! TATGCCGAACTAGTATTGAA+TGG + tig0045108:2369-2388 Msa1465270:intron 35.0%
!! TTATGGTGACTTCTAGGATA+AGG - tig0045108:2560-2579 Msa1465270:intergenic 35.0%
CATTGTGGCAGAAAAAGTTA+AGG + tig0045108:2650-2669 Msa1465270:intron 35.0%
! AGAGTGAAATCAAAGCACTA+AGG + tig0045108:2688-2707 Msa1465270:CDS 35.0%
! CATAAGCAGCTTTATCCATT+AGG + tig0045108:2787-2806 Msa1465270:intron 35.0%
!! TTCCGCATCGTTCTAAATTT+TGG + tig0045108:2903-2922 Msa1465270:intron 35.0%
! GACCAAAATTTAGAACGATG+CGG - tig0045108:2908-2927 Msa1465270:intergenic 35.0%
CTTCATTTCTCAGCTGAAAA+TGG - tig0045108:3006-3025 Msa1465270:intergenic 35.0%
TTTCAGCTGAGAAATGAAGT+CGG + tig0045108:3007-3026 Msa1465270:intron 35.0%
! AAGCAAAAGGTACACTGATT+TGG + tig0045108:3070-3089 Msa1465270:intron 35.0%
! GGTTCTAGCAATCTTCAATA+TGG - tig0045108:3123-3142 Msa1465270:intergenic 35.0%
TTGTAATCTCAGCTTGAAGA+GGG - tig0045108:3325-3344 Msa1465270:intergenic 35.0%
ATTGTAATCTCAGCTTGAAG+AGG - tig0045108:3326-3345 Msa1465270:intergenic 35.0%
TTCATAGATAACAGCACTTC+AGG + tig0045108:3463-3482 Msa1465270:intron 35.0%
! CAACTTCAAGAATCTTTTGG+CGG - tig0045108:3769-3788 Msa1465270:intergenic 35.0%
AAAGCTTAGCCAAACTATTC+AGG + tig0045108:3790-3809 Msa1465270:CDS 35.0%
GCAATTCAGAAACTTGTCTT+TGG - tig0045108:3871-3890 Msa1465270:intergenic 35.0%
! TGATCTTTTGTGGTAACTTG+TGG + tig0045108:3940-3959 Msa1465270:intron 35.0%
! ATTTCCCTTTCCCTCACTTT+TGG - tig0045108:1898-1917 Msa1058370:intergenic 40.0%
AAAAGTGAGGGAAAGGGAAA+TGG + tig0045108:1897-1916 Msa1465270:CDS 40.0%
GTGAGGTGTGAAAAGCAATA+TGG + tig0045108:1919-1938 Msa1465270:CDS 40.0%
GTGTGAAAAGCAATATGGAG+AGG + tig0045108:1924-1943 Msa1465270:CDS 40.0%
CGATTAATCTCCAACACCAT+AGG - tig0045108:1973-1992 Msa1465270:intergenic 40.0%
TGAGAATCAAACTGACCAGA+TGG - tig0045108:2097-2116 Msa1465270:intergenic 40.0%
TCATGACTGAGACAATGATC+TGG - tig0045108:2421-2440 Msa1465270:intergenic 40.0%
CTGCTCACAAGTAGAAAGTT+TGG - tig0045108:2459-2478 Msa1465270:intergenic 40.0%
GTCTTTCATATCACATACGG+TGG - tig0045108:2535-2554 Msa1465270:intergenic 40.0%
!! ACGGTTCTAAATTGAGGTTG+CGG - tig0045108:2948-2967 Msa1465270:intergenic 40.0%
CATTTCTCAGCTGAAAATGG+TGG - tig0045108:3003-3022 Msa1465270:intergenic 40.0%
GAGAAATGAAGTCGGTAAAC+TGG + tig0045108:3015-3034 Msa1465270:CDS 40.0%
AGAGGATCGTCTTAAGCAAA+AGG + tig0045108:3057-3076 Msa1465270:CDS 40.0%
! GAACAGAATCGTCATCCTTT+TGG - tig0045108:3283-3302 Msa1465270:intergenic 40.0%
TGTAATCTCAGCTTGAAGAG+GGG - tig0045108:3324-3343 Msa1465270:intergenic 40.0%
CCTTGCAAATGATTCCTTGT+TGG - tig0045108:3388-3407 Msa1465270:intergenic 40.0%
CCAACAAGGAATCATTTGCA+AGG + tig0045108:3385-3404 Msa1465270:intron 40.0%
TTTGCAAAGTGCACTAGAGA+AGG + tig0045108:3553-3572 Msa1465270:CDS 40.0%
GAGACAGATTGATATCTACC+AGG + tig0045108:3619-3638 Msa1465270:intron 40.0%
GAAACGCAAAAAATCTTGCC+TGG - tig0045108:3640-3659 Msa1465270:intergenic 40.0%
TTACAACTACCACAAACAGG+AGG + tig0045108:3718-3737 Msa1465270:intron 40.0%
CCTCAAGTTCCTGAATAGTT+TGG - tig0045108:3802-3821 Msa1465270:intergenic 40.0%
CCAAACTATTCAGGAACTTG+AGG + tig0045108:3799-3818 Msa1465270:CDS 40.0%
GAGGAAGTCATCTTAGCTAA+CGG + tig0045108:3818-3837 Msa1465270:CDS 40.0%
ATGAGAAAAGGACACTAGAG+AGG + tig0045108:3984-4003 Msa1465270:CDS 40.0%
TGAGAAAAGGACACTAGAGA+GGG + tig0045108:3985-4004 Msa1465270:CDS 40.0%
GCTAGCAAGGGTAAAAGTTT+CGG + tig0045108:4009-4028 Msa1465270:CDS 40.0%
TCGGCCAATAGAATTGCAAA+TGG + tig0045108:4028-4047 Msa1465270:CDS 40.0%
CAAATGGTGAAGCTAATGAG+TGG + tig0045108:4044-4063 Msa1465270:CDS 40.0%
GTGGAAGGATGAAAATGACA+AGG + tig0045108:4063-4082 Msa1465270:CDS 40.0%
AGAAGAGAGAAGGATTATGC+AGG + tig0045108:4108-4127 Msa1465270:CDS 40.0%
! ATTTCCCTTTCCCTCACTTT+TGG - tig0045108:1898-1917 Msa1465270:intergenic 40.0%
AAAAGTGAGGGAAAGGGAAA+TGG + tig0045108:1897-1916 Msa1465270:CDS 40.0%
GTGAGGTGTGAAAAGCAATA+TGG + tig0045108:1919-1938 Msa1465270:CDS 40.0%
GTGTGAAAAGCAATATGGAG+AGG + tig0045108:1924-1943 Msa1465270:CDS 40.0%
CGATTAATCTCCAACACCAT+AGG - tig0045108:1973-1992 Msa1465270:intergenic 40.0%
TGAGAATCAAACTGACCAGA+TGG - tig0045108:2097-2116 Msa1465270:intergenic 40.0%
TCATGACTGAGACAATGATC+TGG - tig0045108:2421-2440 Msa1465270:intergenic 40.0%
CTGCTCACAAGTAGAAAGTT+TGG - tig0045108:2459-2478 Msa1465270:intergenic 40.0%
GTCTTTCATATCACATACGG+TGG - tig0045108:2535-2554 Msa1465270:intergenic 40.0%
!! ACGGTTCTAAATTGAGGTTG+CGG - tig0045108:2948-2967 Msa1465270:intergenic 40.0%
CATTTCTCAGCTGAAAATGG+TGG - tig0045108:3003-3022 Msa1465270:intergenic 40.0%
GAGAAATGAAGTCGGTAAAC+TGG + tig0045108:3015-3034 Msa1465270:CDS 40.0%
AGAGGATCGTCTTAAGCAAA+AGG + tig0045108:3057-3076 Msa1465270:CDS 40.0%
! GAACAGAATCGTCATCCTTT+TGG - tig0045108:3283-3302 Msa1465270:intergenic 40.0%
TGTAATCTCAGCTTGAAGAG+GGG - tig0045108:3324-3343 Msa1465270:intergenic 40.0%
CCTTGCAAATGATTCCTTGT+TGG - tig0045108:3388-3407 Msa1465270:intergenic 40.0%
CCAACAAGGAATCATTTGCA+AGG + tig0045108:3385-3404 Msa1465270:intron 40.0%
TTTGCAAAGTGCACTAGAGA+AGG + tig0045108:3553-3572 Msa1465270:CDS 40.0%
GAGACAGATTGATATCTACC+AGG + tig0045108:3619-3638 Msa1465270:intron 40.0%
GAAACGCAAAAAATCTTGCC+TGG - tig0045108:3640-3659 Msa1465270:intergenic 40.0%
TTACAACTACCACAAACAGG+AGG + tig0045108:3718-3737 Msa1465270:intron 40.0%
CCTCAAGTTCCTGAATAGTT+TGG - tig0045108:3802-3821 Msa1465270:intergenic 40.0%
CCAAACTATTCAGGAACTTG+AGG + tig0045108:3799-3818 Msa1465270:CDS 40.0%
GAGGAAGTCATCTTAGCTAA+CGG + tig0045108:3818-3837 Msa1465270:CDS 40.0%
ATGAGAAAAGGACACTAGAG+AGG + tig0045108:3984-4003 Msa1465270:CDS 40.0%
TGAGAAAAGGACACTAGAGA+GGG + tig0045108:3985-4004 Msa1465270:CDS 40.0%
GCTAGCAAGGGTAAAAGTTT+CGG + tig0045108:4009-4028 Msa1465270:CDS 40.0%
TCGGCCAATAGAATTGCAAA+TGG + tig0045108:4028-4047 Msa1465270:CDS 40.0%
CAAATGGTGAAGCTAATGAG+TGG + tig0045108:4044-4063 Msa1465270:CDS 40.0%
GTGGAAGGATGAAAATGACA+AGG + tig0045108:4063-4082 Msa1465270:CDS 40.0%
AGAAGAGAGAAGGATTATGC+AGG + tig0045108:4108-4127 Msa1465270:CDS 40.0%
!! GACTGAAGCTCTGAAGGATA+AGG + tig0045108:2713-2732 Msa1465270:CDS 45.0%
GAAGGATAAGGCCATAGAAG+AGG + tig0045108:2725-2744 Msa1465270:CDS 45.0%
TTGGTCCACAACTGCAATTG+TGG + tig0045108:2922-2941 Msa1465270:intron 45.0%
CGAGAGACTTAGAGTTACAG+AGG + tig0045108:3039-3058 Msa1465270:CDS 45.0%
!! CCTTCTAAGTGTTGCTTCTG+CGG - tig0045108:3249-3268 Msa1465270:intergenic 45.0%
CGCAGAAGCAACACTTAGAA+GGG + tig0045108:3247-3266 Msa1465270:CDS 45.0%
! AAGGGTGCATGCAAACCAAA+AGG + tig0045108:3265-3284 Msa1465270:CDS 45.0%
! AAGCATTGCTAGATGCAGAG+AGG + tig0045108:3528-3547 Msa1465270:CDS 45.0%
! TTTTGGTCTCCTCCTGTTTG+TGG - tig0045108:3730-3749 Msa1465270:intergenic 45.0%
TGGTGAAGCTAATGAGTGGA+AGG + tig0045108:4048-4067 Msa1465270:CDS 45.0%
TCTTCTAGCCATTGCTTGAC+AGG - tig0045108:4094-4113 Msa1465270:intergenic 45.0%
AGCAATGGCTAGAAGAGAGA+AGG + tig0045108:4098-4117 Msa1465270:CDS 45.0%
!! GACTGAAGCTCTGAAGGATA+AGG + tig0045108:2713-2732 Msa1465270:CDS 45.0%
GAAGGATAAGGCCATAGAAG+AGG + tig0045108:2725-2744 Msa1465270:CDS 45.0%
TTGGTCCACAACTGCAATTG+TGG + tig0045108:2922-2941 Msa1465270:intron 45.0%
CGAGAGACTTAGAGTTACAG+AGG + tig0045108:3039-3058 Msa1465270:CDS 45.0%
!! CCTTCTAAGTGTTGCTTCTG+CGG - tig0045108:3249-3268 Msa1465270:intergenic 45.0%
CGCAGAAGCAACACTTAGAA+GGG + tig0045108:3247-3266 Msa1465270:CDS 45.0%
! AAGGGTGCATGCAAACCAAA+AGG + tig0045108:3265-3284 Msa1465270:CDS 45.0%
! AAGCATTGCTAGATGCAGAG+AGG + tig0045108:3528-3547 Msa1465270:CDS 45.0%
! TTTTGGTCTCCTCCTGTTTG+TGG - tig0045108:3730-3749 Msa1465270:intergenic 45.0%
TGGTGAAGCTAATGAGTGGA+AGG + tig0045108:4048-4067 Msa1465270:CDS 45.0%
TCTTCTAGCCATTGCTTGAC+AGG - tig0045108:4094-4113 Msa1465270:intergenic 45.0%
AGCAATGGCTAGAAGAGAGA+AGG + tig0045108:4098-4117 Msa1465270:CDS 45.0%
!! TTATATTCATTATAATTTAT+AGG - tig0045108:2169-2188 Msa1465270:intergenic 5.0%
!! TTATTATAAAAAAGAAAAAA+GGG - tig0045108:3662-3681 Msa1465270:intergenic 5.0%
!! TTTATTATAAAAAAGAAAAA+AGG - tig0045108:3663-3682 Msa1465270:intergenic 5.0%
!!! TCTTTTTTATAATAAAAAAT+TGG + tig0045108:3667-3686 Msa1465270:intron 5.0%
!! TTATATTCATTATAATTTAT+AGG - tig0045108:2169-2188 Msa1465270:intergenic 5.0%
!! TTATTATAAAAAAGAAAAAA+GGG - tig0045108:3662-3681 Msa1465270:intergenic 5.0%
!! TTTATTATAAAAAAGAAAAA+AGG - tig0045108:3663-3682 Msa1465270:intergenic 5.0%
!!! TCTTTTTTATAATAAAAAAT+TGG + tig0045108:3667-3686 Msa1465270:intron 5.0%
TGAGGGAAAGGGAAATGGTG+AGG + tig0045108:1902-1921 Msa1465270:CDS 50.0%
ATAGGGTCTGAGAGGACAAC+TGG - tig0045108:1955-1974 Msa1465270:intergenic 50.0%
AGTTGTCCTCTCAGACCCTA+TGG + tig0045108:1954-1973 Msa1465270:CDS 50.0%
! AAGGTCGACTGAAGCTCTGA+AGG + tig0045108:2707-2726 Msa1465270:CDS 50.0%
CCGCAGAAGCAACACTTAGA+AGG + tig0045108:3246-3265 Msa1465270:CDS 50.0%
GGGGCAATGGCGTTATCAAT+TGG - tig0045108:3305-3324 Msa1465270:intergenic 50.0%
ACTAGAGAGGGAGCTAGCAA+GGG + tig0045108:3997-4016 Msa1465270:CDS 50.0%
AGGTCATGCCTGTCAAGCAA+TGG + tig0045108:4083-4102 Msa1465270:CDS 50.0%
TGAGGGAAAGGGAAATGGTG+AGG + tig0045108:1902-1921 Msa1465270:CDS 50.0%
ATAGGGTCTGAGAGGACAAC+TGG - tig0045108:1955-1974 Msa1465270:intergenic 50.0%
AGTTGTCCTCTCAGACCCTA+TGG + tig0045108:1954-1973 Msa1465270:CDS 50.0%
! AAGGTCGACTGAAGCTCTGA+AGG + tig0045108:2707-2726 Msa1465270:CDS 50.0%
CCGCAGAAGCAACACTTAGA+AGG + tig0045108:3246-3265 Msa1465270:CDS 50.0%
GGGGCAATGGCGTTATCAAT+TGG - tig0045108:3305-3324 Msa1465270:intergenic 50.0%
ACTAGAGAGGGAGCTAGCAA+GGG + tig0045108:3997-4016 Msa1465270:CDS 50.0%
AGGTCATGCCTGTCAAGCAA+TGG + tig0045108:4083-4102 Msa1465270:CDS 50.0%
CCAACACCATAGGGTCTGAG+AGG - tig0045108:1963-1982 Msa1465270:intergenic 55.0%
CCTCTCAGACCCTATGGTGT+TGG + tig0045108:1960-1979 Msa1465270:CDS 55.0%
TGCGGCCACAATTGCAGTTG+TGG - tig0045108:2930-2949 Msa1465270:intergenic 55.0%
CTCAGCTTGAAGAGGGGCAA+TGG - tig0045108:3318-3337 Msa1465270:intergenic 55.0%
CACTAGAGAGGGAGCTAGCA+AGG + tig0045108:3996-4015 Msa1465270:CDS 55.0%
CCAACACCATAGGGTCTGAG+AGG - tig0045108:1963-1982 Msa1465270:intergenic 55.0%
CCTCTCAGACCCTATGGTGT+TGG + tig0045108:1960-1979 Msa1465270:CDS 55.0%
TGCGGCCACAATTGCAGTTG+TGG - tig0045108:2930-2949 Msa1465270:intergenic 55.0%
CTCAGCTTGAAGAGGGGCAA+TGG - tig0045108:3318-3337 Msa1465270:intergenic 55.0%
CACTAGAGAGGGAGCTAGCA+AGG + tig0045108:3996-4015 Msa1465270:CDS 55.0%
GGGTCTGAGAGGACAACTGG+AGG - tig0045108:1952-1971 Msa1465270:intergenic 60.0%
GGGTCTGAGAGGACAACTGG+AGG - tig0045108:1952-1971 Msa1465270:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0045108 gene 1892 4135 1892 ID=Msa1465270;Name=Msa1465270
tig0045108 mRNA 1892 4135 1892 ID=Msa1465270-mRNA-1;Parent=Msa1465270;Name=Msa1465270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.83|0.57|1|1|1|7|0|291
tig0045108 exon 1892 2012 1892 ID=Msa1465270-mRNA-1:exon:24736;Parent=Msa1465270-mRNA-1
tig0045108 exon 2661 2746 2661 ID=Msa1465270-mRNA-1:exon:24737;Parent=Msa1465270-mRNA-1
tig0045108 exon 3013 3078 3013 ID=Msa1465270-mRNA-1:exon:24738;Parent=Msa1465270-mRNA-1
tig0045108 exon 3188 3358 3188 ID=Msa1465270-mRNA-1:exon:24739;Parent=Msa1465270-mRNA-1
tig0045108 exon 3470 3592 3470 ID=Msa1465270-mRNA-1:exon:24740;Parent=Msa1465270-mRNA-1
tig0045108 exon 3737 3892 3737 ID=Msa1465270-mRNA-1:exon:24741;Parent=Msa1465270-mRNA-1
tig0045108 exon 3983 4135 3983 ID=Msa1465270-mRNA-1:exon:24742;Parent=Msa1465270-mRNA-1
tig0045108 CDS 1892 2012 1892 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
tig0045108 CDS 2661 2746 2661 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
tig0045108 CDS 3013 3078 3013 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
tig0045108 CDS 3188 3358 3188 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
tig0045108 CDS 3470 3592 3470 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
tig0045108 CDS 3737 3892 3737 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
tig0045108 CDS 3983 4135 3983 ID=Msa1465270-mRNA-1:cds;Parent=Msa1465270-mRNA-1
Gene Sequence

>Msa1465270

ATGCCAAAAGTGAGGGAAAGGGAAATGGTGAGGTGTGAAAAGCAATATGGAGAGGAGCCTCCAGTTGTCCTCTCAGACCCTATGGTGTTGGAGATTAATCGTTTGCATAACCAATTCAAAGAAAAAGTTAAGGATGTAGCAACTTGTCAGAGTGAAATCAAAGCACTAAGGTCGACTGAAGCTCTGAAGGATAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAACTGGACGAGAGACTTAGAGTTACAGAGGATCGTCTTAAGCAAAAGAATATAGAAATCAAGAAACTGACAGATGAAAAGAAAAGTGCAATGGCTGCACAATATGCCGCAGAAGCAACACTTAGAAGGGTGCATGCAAACCAAAAGGATGACGATTCTGTTCCAATTGATAACGCCATTGCCCCTCTTCAAGCTGAGATTACAATGTATAGGAATGAGATAACAGCACTTCAGGAAGATAACAAAACTTTAGAACGACTCAAAAAGTCGAAAGAGAAAGCATTGCTAGATGCAGAGAGGATTTTGCAAAGTGCACTAGAGAAGGCTCTAATAATTGAAGAAGAGGAGACCAAAATTTTAGAGAAATCTCGCCGCCAAAAGATTCTTGAAGTTGAAAAGCTTAGCCAAACTATTCAGGAACTTGAGGAAGTCATCTTAGCTAACGGCGCTACAGCTAACGTTGTTCGCGATTACCAAAGACAAGTTTCTGAATTGCAAGATGAGAAAAGGACACTAGAGAGGGAGCTAGCAAGGGTAAAAGTTTCGGCCAATAGAATTGCAAATGGTGAAGCTAATGAGTGGAAGGATGAAAATGACAAGGTCATGCCTGTCAAGCAATGGCTAGAAGAGAGAAGGATTATGCAGGTATGA

Protein sequence

>Msa1465270

MPKVREREMVRCEKQYGEEPPVVLSDPMVLEINRLHNQFKEKVKDVATCQSEIKALRSTEALKDKAIEELRNEVGKLDERLRVTEDRLKQKNIEIKKLTDEKKSAMAAQYAAEATLRRVHANQKDDDSVPIDNAIAPLQAEITMYRNEITALQEDNKTLERLKKSKEKALLDAERILQSALEKALIIEEEETKILEKSRRQKILEVEKLSQTIQELEEVILANGATANVVRDYQRQVSELQDEKRTLERELARVKVSANRIANGEANEWKDENDKVMPVKQWLEERRIMQV*