Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094230 | XP_003610594.2 | 82.313 | 588 | 37 | 3 | 1 | 537 | 1 | 572 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094230 | sp|Q8GYX3|MP705_ARATH | 45.179 | 560 | 181 | 9 | 26 | 526 | 6 | 498 | 2.07e-127 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094230 | A0A396IHM9 | 82.313 | 588 | 37 | 3 | 1 | 537 | 1 | 572 | 0.0 | 898 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094230 | Msa1115020 | 0.811419 | 7.067256e-51 | -8.615850e-47 |
| Msa0094230 | Msa1224320 | 0.981300 | 2.963362e-152 | -8.615850e-47 |
| Msa0094230 | Msa1418000 | 0.939572 | 1.015165e-99 | -8.615850e-47 |
| Msa0094230 | Msa1465270 | 0.873729 | 1.173203e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094230 | MtrunA17_Chr4g0076251 | 82.313 | 588 | 37 | 3 | 1 | 537 | 1 | 572 | 0.0 | 898 |
| Msa0094230 | MtrunA17_Chr2g0290411 | 57.785 | 578 | 153 | 8 | 18 | 536 | 5 | 550 | 0.0 | 586 |
| Msa0094230 | MtrunA17_Chr8g0391771 | 42.105 | 551 | 225 | 11 | 25 | 515 | 56 | 572 | 8.45e-115 | 353 |
| Msa0094230 | MtrunA17_Chr1g0161371 | 41.788 | 548 | 231 | 8 | 25 | 515 | 51 | 567 | 1.60e-112 | 347 |
| Msa0094230 | MtrunA17_Chr8g0344311 | 43.273 | 550 | 218 | 13 | 25 | 515 | 52 | 566 | 2.43e-111 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0094230 | AT4G17220.1 | 45.179 | 560 | 181 | 9 | 26 | 526 | 6 | 498 | 2.10e-128 | 385 |
| Msa0094230 | AT1G68060.1 | 41.873 | 566 | 236 | 12 | 25 | 530 | 65 | 597 | 3.17e-121 | 370 |
| Msa0094230 | AT1G24764.1 | 42.134 | 553 | 224 | 12 | 25 | 515 | 73 | 591 | 3.69e-120 | 368 |
| Msa0094230 | AT1G24764.3 | 42.134 | 553 | 224 | 12 | 25 | 515 | 132 | 650 | 8.69e-119 | 366 |
| Msa0094230 | AT1G14840.1 | 41.772 | 553 | 222 | 10 | 25 | 515 | 48 | 562 | 2.43e-118 | 362 |
| Msa0094230 | AT2G01750.2 | 39.826 | 575 | 238 | 11 | 25 | 532 | 72 | 605 | 7.95e-115 | 353 |
| Msa0094230 | AT2G01750.1 | 39.826 | 575 | 238 | 11 | 25 | 532 | 72 | 605 | 1.16e-114 | 353 |
| Msa0094230 | AT1G14840.2 | 41.002 | 539 | 231 | 11 | 25 | 515 | 48 | 547 | 3.68e-108 | 335 |
| Msa0094230 | AT1G24764.2 | 41.102 | 472 | 182 | 12 | 106 | 515 | 1 | 438 | 1.11e-93 | 294 |
Find 100 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAGATTTCTCTAAAATTT+TGG | 0.168689 | 1_2:+77427317 | None:intergenic |
| ATATTTGTCTGTTGAAATAA+AGG | 0.235016 | 1_2:+77426120 | None:intergenic |
| GTTTGTACATAATCAAATTC+TGG | 0.253373 | 1_2:+77424944 | None:intergenic |
| ATTTCCCTTTCCCTCACTTT+TGG | 0.259668 | 1_2:+77429167 | None:intergenic |
| TAATTAAAATACCTCTTCTA+TGG | 0.278017 | 1_2:+77428325 | None:intergenic |
| TTTCAACTTCAAGAATCTTT+TGG | 0.283060 | 1_2:+77427292 | None:intergenic |
| TGGACCACCACTTGCTGTTC+GGG | 0.284359 | 1_2:+77426188 | None:intergenic |
| AAAGCTTAGCCAAACTATTC+AGG | 0.293484 | 1_2:-77427271 | Msa0094230:CDS |
| GAACAGAATCGTCATCCTTT+TGG | 0.300614 | 1_2:+77427781 | None:intergenic |
| GCAATTCAGAAACTTGTCTT+TGG | 0.311316 | 1_2:+77427193 | None:intergenic |
| CCTCAAGTTCCTGAATAGTT+TGG | 0.312176 | 1_2:+77427262 | None:intergenic |
| TTCACCATTTGCAATTCTAT+TGG | 0.325874 | 1_2:+77427029 | None:intergenic |
| TTCATAGATAACAGCACTTC+AGG | 0.334892 | 1_2:-77427598 | Msa0094230:intron |
| AGTCATTTGGTTTCTTGCTT+TGG | 0.339262 | 1_2:+77425860 | None:intergenic |
| TTGGACCACCACTTGCTGTT+CGG | 0.348999 | 1_2:+77426187 | None:intergenic |
| TGCAGTGACGATTTGGTGTC+AGG | 0.351949 | 1_2:-77425835 | Msa0094230:CDS |
| GTTCGGGAACTTATGATGTT+AGG | 0.366965 | 1_2:+77426204 | None:intergenic |
| GTTTGTAAATACAAAACATT+TGG | 0.369792 | 1_2:-77425012 | Msa0094230:three_prime_UTR |
| CAACCAAGAGCATCTGCTAT+TGG | 0.377463 | 1_2:-77426147 | Msa0094230:CDS |
| ACATGTTGAAGAAAAGGATA+TGG | 0.378577 | 1_2:-77426020 | Msa0094230:CDS |
| GAGAAATGAAGTCGGTAAAC+TGG | 0.378705 | 1_2:-77428046 | Msa0094230:CDS |
| CCGCAGAAGCAACACTTAGA+AGG | 0.382381 | 1_2:-77427815 | Msa0094230:CDS |
| TCTTCTAGCCATTGCTTGAC+AGG | 0.383618 | 1_2:+77426970 | None:intergenic |
| AAAACAACACAAACACTGTT+GGG | 0.389131 | 1_2:-77426095 | Msa0094230:CDS |
| TAAACAAAGAACCTTTGAAT+TGG | 0.391122 | 1_2:+77429060 | None:intergenic |
| CTTCACTTTCAGCATTGAAC+TGG | 0.402094 | 1_2:+77425923 | None:intergenic |
| TTTCTTCCACTCTACTTCCA+TGG | 0.416424 | 1_2:+77425285 | None:intergenic |
| TATTTGTCTGTTGAAATAAA+GGG | 0.417797 | 1_2:+77426121 | None:intergenic |
| CTTTATTTGTAGATAGCTAA+AGG | 0.421505 | 1_2:-77425063 | Msa0094230:three_prime_UTR |
| CGGAAAACATGTTGAAGAAA+AGG | 0.427179 | 1_2:-77426026 | Msa0094230:CDS |
| CCACTCTACTTCCATGGACT+TGG | 0.429401 | 1_2:+77425291 | None:intergenic |
| GCTAGCAAGGGTAAAAGTTT+CGG | 0.430627 | 1_2:-77427052 | Msa0094230:CDS |
| TCGTCACTGCACGAGTCATT+TGG | 0.432134 | 1_2:+77425847 | None:intergenic |
| GGGGCAATGGCGTTATCAAT+TGG | 0.440234 | 1_2:+77427759 | None:intergenic |
| TGAAAAGGAAAATGAGATAC+AGG | 0.451771 | 1_2:-77425968 | Msa0094230:CDS |
| AGTTGCTGATAGTGGTGAAA+AGG | 0.454137 | 1_2:-77425983 | Msa0094230:CDS |
| ATAGGGTCTGAGAGGACAAC+TGG | 0.454257 | 1_2:+77429110 | None:intergenic |
| GTGAGGTGTGAAAAGCAATA+TGG | 0.458438 | 1_2:-77429143 | Msa0094230:CDS |
| TGACTCGTGCAGTGACGATT+TGG | 0.459803 | 1_2:-77425842 | Msa0094230:CDS |
| AAGCTGAGATTACAATGTAT+AGG | 0.477680 | 1_2:-77427731 | Msa0094230:CDS |
| CACTAGAGAGGGAGCTAGCA+AGG | 0.481581 | 1_2:-77427065 | Msa0094230:CDS |
| AAAAGTGAGGGAAAGGGAAA+TGG | 0.487123 | 1_2:-77429165 | Msa0094230:CDS |
| CTTCCAATAGCAGATGCTCT+TGG | 0.493116 | 1_2:+77426144 | None:intergenic |
| AGAGGATCGTCTTAAGCAAA+AGG | 0.497139 | 1_2:-77428004 | Msa0094230:intron |
| CCTCTCAGACCCTATGGTGT+TGG | 0.497422 | 1_2:-77429102 | Msa0094230:CDS |
| ATAAGTAAAGTTGCTGATAG+TGG | 0.498402 | 1_2:-77425991 | Msa0094230:CDS |
| AGATGCAGCTGCTAGAGAAA+AGG | 0.499613 | 1_2:-77425254 | Msa0094230:CDS |
| CGATTAATCTCCAACACCAT+AGG | 0.511794 | 1_2:+77429092 | None:intergenic |
| AGTTGTCCTCTCAGACCCTA+TGG | 0.511922 | 1_2:-77429108 | Msa0094230:CDS |
| GACTGAAGCTCTGAAGGATA+AGG | 0.515576 | 1_2:-77428348 | Msa0094230:CDS |
| CGTTTGCATAACCAATTCAA+AGG | 0.519141 | 1_2:-77429071 | Msa0094230:intron |
| CAATGCCAAAAGTGAGGGAA+AGG | 0.521517 | 1_2:-77429172 | Msa0094230:CDS |
| CTCAGCTTGAAGAGGGGCAA+TGG | 0.525958 | 1_2:+77427746 | None:intergenic |
| TAAAATTATATTATACACAT+TGG | 0.526083 | 1_2:-77424782 | Msa0094230:three_prime_UTR |
| TTGTAATCTCAGCTTGAAGA+GGG | 0.530115 | 1_2:+77427739 | None:intergenic |
| AATTGAATACGAGGAACACT+TGG | 0.534757 | 1_2:-77424832 | Msa0094230:three_prime_UTR |
| CCAAACTATTCAGGAACTTG+AGG | 0.536454 | 1_2:-77427262 | Msa0094230:CDS |
| AAGGGTGCATGCAAACCAAA+AGG | 0.538099 | 1_2:-77427796 | Msa0094230:CDS |
| TTTGCAAAGTGCACTAGAGA+AGG | 0.539870 | 1_2:-77427508 | Msa0094230:CDS |
| CCTTCTAAGTGTTGCTTCTG+CGG | 0.541428 | 1_2:+77427815 | None:intergenic |
| CGCAGAAGCAACACTTAGAA+GGG | 0.542238 | 1_2:-77427814 | Msa0094230:CDS |
| GAAACACAGACTCCTCCAAA+AGG | 0.543913 | 1_2:-77425189 | Msa0094230:intron |
| TCGGCCAATAGAATTGCAAA+TGG | 0.544219 | 1_2:-77427033 | Msa0094230:CDS |
| TGATGCACTGACCAAGTCCA+TGG | 0.550345 | 1_2:-77425302 | Msa0094230:CDS |
| AAACAACACAAACACTGTTG+GGG | 0.563286 | 1_2:-77426094 | Msa0094230:CDS |
| GATTAATCTCCAACACCATA+GGG | 0.563826 | 1_2:+77429093 | None:intergenic |
| AGAAGAGAGAAGGATTATGC+AGG | 0.567503 | 1_2:-77426953 | Msa0094230:intron |
| AAGGTCGACTGAAGCTCTGA+AGG | 0.573607 | 1_2:-77428354 | Msa0094230:CDS |
| CCTCCCAATGCCAAAAGTGA+GGG | 0.575640 | 1_2:-77429177 | None:intergenic |
| AGCAATGGCTAGAAGAGAGA+AGG | 0.577331 | 1_2:-77426963 | Msa0094230:CDS |
| AATGCCAAAAGTGAGGGAAA+GGG | 0.592729 | 1_2:-77429171 | Msa0094230:CDS |
| TCCTCCCAATGCCAAAAGTG+AGG | 0.596299 | 1_2:-77429178 | None:intergenic |
| GAGGAAGTCATCTTAGCTAA+CGG | 0.600860 | 1_2:-77427243 | Msa0094230:CDS |
| GATTACAATGTATAGGAATG+AGG | 0.604046 | 1_2:-77427724 | Msa0094230:intron |
| AGGTCATGCCTGTCAAGCAA+TGG | 0.604618 | 1_2:-77426978 | Msa0094230:CDS |
| ATGAGAAAAGGACACTAGAG+AGG | 0.607096 | 1_2:-77427077 | Msa0094230:CDS |
| GTATGATAGGCTGCAAAGAG+AGG | 0.608475 | 1_2:-77425806 | Msa0094230:intron |
| CCAAGTCCATGGAAGTAGAG+TGG | 0.610186 | 1_2:-77425291 | Msa0094230:CDS |
| ACTAGAGAGGGAGCTAGCAA+GGG | 0.615439 | 1_2:-77427064 | Msa0094230:CDS |
| TAAAATGAAGTATACTTCTG+CGG | 0.618529 | 1_2:-77426046 | Msa0094230:CDS |
| CGAGAGACTTAGAGTTACAG+AGG | 0.619933 | 1_2:-77428022 | Msa0094230:CDS |
| AGAGTGAAATCAAAGCACTA+AGG | 0.626155 | 1_2:-77428373 | Msa0094230:CDS |
| GAAGGATAAGGCCATAGAAG+AGG | 0.631116 | 1_2:-77428336 | Msa0094230:intron |
| ATAAGTTCCCGAACAGCAAG+TGG | 0.632187 | 1_2:-77426195 | Msa0094230:CDS |
| TGGTGAAGCTAATGAGTGGA+AGG | 0.633476 | 1_2:-77427013 | Msa0094230:CDS |
| GAGACAGATTGATATCTACC+AGG | 0.637534 | 1_2:-77427442 | Msa0094230:CDS |
| TGAGGGAAAGGGAAATGGTG+AGG | 0.637716 | 1_2:-77429160 | Msa0094230:CDS |
| AACAACACAAACACTGTTGG+GGG | 0.647416 | 1_2:-77426093 | Msa0094230:CDS |
| ATTGTAATCTCAGCTTGAAG+AGG | 0.647918 | 1_2:+77427738 | None:intergenic |
| AGACGAAAAGAAAAGTGCAA+TGG | 0.651443 | 1_2:-77427850 | Msa0094230:CDS |
| TGAGAAAAGGACACTAGAGA+GGG | 0.660251 | 1_2:-77427076 | Msa0094230:CDS |
| AGTTCCCGAACAGCAAGTGG+TGG | 0.662519 | 1_2:-77426192 | Msa0094230:CDS |
| GTGTGAAAAGCAATATGGAG+AGG | 0.669978 | 1_2:-77429138 | Msa0094230:CDS |
| CCAACACCATAGGGTCTGAG+AGG | 0.675725 | 1_2:+77429102 | None:intergenic |
| TTTCAGCTGAGAAATGAAGT+CGG | 0.679362 | 1_2:-77428054 | Msa0094230:intron |
| GTGGAAGGATGAAAATGACA+AGG | 0.684047 | 1_2:-77426998 | Msa0094230:CDS |
| TGTAATCTCAGCTTGAAGAG+GGG | 0.692586 | 1_2:+77427740 | None:intergenic |
| CAAATGGTGAAGCTAATGAG+TGG | 0.695992 | 1_2:-77427017 | Msa0094230:CDS |
| GGGTCTGAGAGGACAACTGG+AGG | 0.711528 | 1_2:+77429113 | None:intergenic |
| AAGCATTGCTAGATGCAGAG+AGG | 0.719701 | 1_2:-77427533 | Msa0094230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATAAAAAAAAAAAAA+GGG | + | chr1_2:77426524-77426543 | None:intergenic | 0.0% |
| !! | TTTATTATAAAAAAAAAAAA+AGG | + | chr1_2:77426525-77426544 | None:intergenic | 0.0% |
| !!! | TTTTTTTTATAATAAAAAAT+TGG | - | chr1_2:77426529-77426548 | Msa0094230:intron | 0.0% |
| !! | TAATTATACTACAAATTAAT+AGG | + | chr1_2:77425722-77425741 | None:intergenic | 10.0% |
| !! | TAAAATTATATTATACACAT+TGG | - | chr1_2:77429141-77429160 | Msa0094230:CDS | 10.0% |
| !!! | TTTAAAACTCTAATAAAGAT+TGG | + | chr1_2:77425349-77425368 | None:intergenic | 15.0% |
| !! | AATGATTACATAAAGTTATA+AGG | + | chr1_2:77425496-77425515 | None:intergenic | 15.0% |
| !!! | TACTTGTATTTTATTAAAGT+AGG | - | chr1_2:77425957-77425976 | Msa0094230:CDS | 15.0% |
| !! | AAATAAAACTGTAGTATTTA+AGG | + | chr1_2:77427059-77427078 | None:intergenic | 15.0% |
| !!! | GTTTTATTTTGTTACTTATA+AGG | - | chr1_2:77427070-77427089 | Msa0094230:CDS | 15.0% |
| !! | ATATACTGAAATAAATCTTA+AGG | - | chr1_2:77427119-77427138 | Msa0094230:intron | 15.0% |
| !! | TATACTGAAATAAATCTTAA+GGG | - | chr1_2:77427120-77427139 | Msa0094230:intron | 15.0% |
| !!! | ACAATTTTATAACATTGTTA+TGG | + | chr1_2:77428811-77428830 | None:intergenic | 15.0% |
| !! | ATAACTTTATGTAATCATTG+TGG | - | chr1_2:77425497-77425516 | Msa0094230:intron | 20.0% |
| !! | TAATTAAAATACCTCTTCTA+TGG | + | chr1_2:77425601-77425620 | None:intergenic | 20.0% |
| !!! | ATATTGTTATTGTAGTTTTC+AGG | + | chr1_2:77427103-77427122 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTATAAGTTATCT+TGG | - | chr1_2:77427305-77427324 | Msa0094230:CDS | 20.0% |
| !! | GTTTGTAGAAATTTCATTTA+GGG | + | chr1_2:77427456-77427475 | None:intergenic | 20.0% |
| !! | AGTTTGTAGAAATTTCATTT+AGG | + | chr1_2:77427457-77427476 | None:intergenic | 20.0% |
| !!! | TCAATTTTCAATGTGTTATT+TGG | - | chr1_2:77427612-77427631 | Msa0094230:intron | 20.0% |
| !! | TATTTGTCTGTTGAAATAAA+GGG | + | chr1_2:77427805-77427824 | None:intergenic | 20.0% |
| !! | ATATTTGTCTGTTGAAATAA+AGG | + | chr1_2:77427806-77427825 | None:intergenic | 20.0% |
| !!! | GAAGTATACTTCATTTTAAT+AGG | + | chr1_2:77427875-77427894 | None:intergenic | 20.0% |
| !!! | AACAATTGTTTTGATTTCTT+CGG | + | chr1_2:77428026-77428045 | None:intergenic | 20.0% |
| !!! | TTTATGAAATGTGTGTTTTA+TGG | + | chr1_2:77428509-77428528 | None:intergenic | 20.0% |
| !! | ATGTAGTTCAATATGATATA+TGG | + | chr1_2:77428572-77428591 | None:intergenic | 20.0% |
| !! | AATGTTATAAAATTGTTGCA+GGG | - | chr1_2:77428815-77428834 | Msa0094230:intron | 20.0% |
| !! | GTTTGTAAATACAAAACATT+TGG | - | chr1_2:77428911-77428930 | Msa0094230:intron | 20.0% |
| !!! | ACTCTTTTATACAAATTTAC+AGG | + | chr1_2:77429023-77429042 | None:intergenic | 20.0% |
| ! | TAAACAAAGAACCTTTGAAT+TGG | + | chr1_2:77424866-77424885 | None:intergenic | 25.0% |
| ! | ATATCCATTCAATACTAGTT+CGG | + | chr1_2:77425238-77425257 | None:intergenic | 25.0% |
| !!! | CTGGTCAATACTTTTTTTTT+GGG | + | chr1_2:77425264-77425283 | None:intergenic | 25.0% |
| !!! | TCTGGTCAATACTTTTTTTT+TGG | + | chr1_2:77425265-77425284 | None:intergenic | 25.0% |
| ! | AATCTATCTATACAAACACA+TGG | - | chr1_2:77425621-77425640 | Msa0094230:intron | 25.0% |
| ! | AACATGCATGACATAATTAA+TGG | + | chr1_2:77425677-77425696 | None:intergenic | 25.0% |
| !!! | AATAATACGGTTCTAAATTG+AGG | + | chr1_2:77425816-77425835 | None:intergenic | 25.0% |
| ! | CCATATTAGACTGAATAATA+CGG | + | chr1_2:77425829-77425848 | None:intergenic | 25.0% |
| !! | TTCTGCATAAGAATAGATTT+TGG | + | chr1_2:77426032-77426051 | None:intergenic | 25.0% |
| !! | TTTCAACTTCAAGAATCTTT+TGG | + | chr1_2:77426634-77426653 | None:intergenic | 25.0% |
| !! | TGATATATTGACTGTTTGTT+TGG | - | chr1_2:77426778-77426797 | Msa0094230:intron | 25.0% |
| !! | GGTTTTGCATATAAATTTTC+AGG | - | chr1_2:77426823-77426842 | Msa0094230:intron | 25.0% |
| !!! | TAAATTTTCAGGATGAGAAA+AGG | - | chr1_2:77426834-77426853 | Msa0094230:intron | 25.0% |
| !! | ATAAACTTCAAAGGTTTTCA+TGG | + | chr1_2:77427019-77427038 | None:intergenic | 25.0% |
| !! | ACTAGGATTTTCCATATTTA+AGG | - | chr1_2:77427173-77427192 | Msa0094230:intron | 25.0% |
| ! | TCAAACATGATAATTCAAAC+AGG | - | chr1_2:77427430-77427449 | Msa0094230:CDS | 25.0% |
| !! | AATTGATTTAGATGCTTACA+TGG | + | chr1_2:77427598-77427617 | None:intergenic | 25.0% |
| ! | AAAAGTGAGACTAAAAACAA+TGG | - | chr1_2:77427655-77427674 | Msa0094230:intron | 25.0% |
| ! | TAAAATGAAGTATACTTCTG+CGG | - | chr1_2:77427877-77427896 | Msa0094230:intron | 25.0% |
| ! | AGCTAAAGATGAAGAAATTA+TGG | - | chr1_2:77428186-77428205 | Msa0094230:intron | 25.0% |
| ! | ATGTCATCTATATAAAGTGT+CGG | + | chr1_2:77428254-77428273 | None:intergenic | 25.0% |
| ! | CAATGTTATAAAATTGTTGC+AGG | - | chr1_2:77428814-77428833 | Msa0094230:intron | 25.0% |
| !! | CTTTATTTGTAGATAGCTAA+AGG | - | chr1_2:77428860-77428879 | Msa0094230:intron | 25.0% |
| ! | GTTTGTACATAATCAAATTC+TGG | + | chr1_2:77428982-77429001 | None:intergenic | 25.0% |
| ! | ATTCAATTTCGTGAAAAACT+TGG | + | chr1_2:77429079-77429098 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGTTTCCATCATG+AGG | - | chr1_2:77424911-77424930 | Msa0094230:three_prime_UTR | 30.0% |
| ! | AGTTTGATTTAGTTTCCATC+TGG | - | chr1_2:77424941-77424960 | Msa0094230:three_prime_UTR | 30.0% |
| GAAGTCTTTCATATCACATA+CGG | + | chr1_2:77425400-77425419 | None:intergenic | 30.0% | |
| TTGTGTTCAACTTACACTTA+TGG | + | chr1_2:77425439-77425458 | None:intergenic | 30.0% | |
| AAATGAACTATTCAAGTCAG+TGG | - | chr1_2:77425458-77425477 | Msa0094230:intron | 30.0% | |
| ! | ATAAGCAGCTTTATCCATTA+GGG | - | chr1_2:77425650-77425669 | Msa0094230:intron | 30.0% |
| ACATAATTAATGGTCCCTAA+TGG | + | chr1_2:77425667-77425686 | None:intergenic | 30.0% | |
| CCGTATTATTCAGTCTAATA+TGG | - | chr1_2:77425826-77425845 | Msa0094230:CDS | 30.0% | |
| ! | GAGAGAAAAACTTGCATTTT+AGG | + | chr1_2:77426006-77426025 | None:intergenic | 30.0% |
| AAGCTGAGATTACAATGTAT+AGG | - | chr1_2:77426192-77426211 | Msa0094230:CDS | 30.0% | |
| GATTACAATGTATAGGAATG+AGG | - | chr1_2:77426199-77426218 | Msa0094230:CDS | 30.0% | |
| AAATACTACCATTTCCAACA+AGG | - | chr1_2:77426233-77426252 | Msa0094230:CDS | 30.0% | |
| AAATGATTCCTTGTTGGAAA+TGG | + | chr1_2:77426244-77426263 | None:intergenic | 30.0% | |
| TTTGCAAGGATAGATCAAAA+TGG | - | chr1_2:77426261-77426280 | Msa0094230:CDS | 30.0% | |
| TGTTTGTGGTAGTTGTAAAT+TGG | + | chr1_2:77426578-77426597 | None:intergenic | 30.0% | |
| AATTTACAACTACCACAAAC+AGG | - | chr1_2:77426577-77426596 | Msa0094230:intron | 30.0% | |
| !!! | GCGAGATTTCTCTAAAATTT+TGG | + | chr1_2:77426609-77426628 | None:intergenic | 30.0% |
| ! | TTTGTTTGGTTGATCTTTTG+TGG | - | chr1_2:77426792-77426811 | Msa0094230:intron | 30.0% |
| TTCACCATTTGCAATTCTAT+TGG | + | chr1_2:77426897-77426916 | None:intergenic | 30.0% | |
| CAGGATGATATAAACTTCAA+AGG | + | chr1_2:77427028-77427047 | None:intergenic | 30.0% | |
| ! | AGGGTAAGTTTAAGTTTAAG+AGG | - | chr1_2:77427139-77427158 | Msa0094230:intron | 30.0% |
| ! | GGGTAAGTTTAAGTTTAAGA+GGG | - | chr1_2:77427140-77427159 | Msa0094230:intron | 30.0% |
| TTGATTGGACTCCTTAAATA+TGG | + | chr1_2:77427187-77427206 | None:intergenic | 30.0% | |
| AATCAGTTGTGAGATTGTTT+GGG | + | chr1_2:77427394-77427413 | None:intergenic | 30.0% | |
| TAATCAGTTGTGAGATTGTT+TGG | + | chr1_2:77427395-77427414 | None:intergenic | 30.0% | |
| !!! | TGTGATGTAGATCTCTTTTT+TGG | + | chr1_2:77427758-77427777 | None:intergenic | 30.0% |
| AAAAACAACACAAACACTGT+TGG | - | chr1_2:77427827-77427846 | Msa0094230:CDS | 30.0% | |
| AAAACAACACAAACACTGTT+GGG | - | chr1_2:77427828-77427847 | Msa0094230:CDS | 30.0% | |
| ACATGTTGAAGAAAAGGATA+TGG | - | chr1_2:77427903-77427922 | Msa0094230:intron | 30.0% | |
| ATAAGTAAAGTTGCTGATAG+TGG | - | chr1_2:77427932-77427951 | Msa0094230:intron | 30.0% | |
| TGAAAAGGAAAATGAGATAC+AGG | - | chr1_2:77427955-77427974 | Msa0094230:intron | 30.0% | |
| !!! | TGTCAGGTTTTTTGTATGAT+AGG | - | chr1_2:77428104-77428123 | Msa0094230:intron | 30.0% |
| AAAGAGAGGTCATTAAATTG+AGG | - | chr1_2:77428131-77428150 | Msa0094230:intron | 30.0% | |
| AAATTATTACCAGTGTCTTC+AGG | - | chr1_2:77428363-77428382 | Msa0094230:CDS | 30.0% | |
| ATGTTTCAAAGTCTACAAGT+AGG | - | chr1_2:77428431-77428450 | Msa0094230:intron | 30.0% | |
| GTTCAATATGATATATGGAG+AGG | + | chr1_2:77428567-77428586 | None:intergenic | 30.0% | |
| ! | ATAATTTTCCACTGCCAAAA+AGG | - | chr1_2:77428952-77428971 | Msa0094230:intron | 30.0% |
| ! | TTTTCACGAAATTGAATACG+AGG | - | chr1_2:77429082-77429101 | Msa0094230:CDS | 30.0% |
| GATTAATCTCCAACACCATA+GGG | + | chr1_2:77424833-77424852 | None:intergenic | 35.0% | |
| CGTTTGCATAACCAATTCAA+AGG | - | chr1_2:77424852-77424871 | Msa0094230:three_prime_UTR | 35.0% | |
| AAACTCAATACTCCTCATGA+TGG | + | chr1_2:77424926-77424945 | None:intergenic | 35.0% | |
| TACTAGTTCGGCATAAAACA+AGG | + | chr1_2:77425226-77425245 | None:intergenic | 35.0% | |
| ! | TATGCCGAACTAGTATTGAA+TGG | - | chr1_2:77425231-77425250 | Msa0094230:CDS | 35.0% |
| TTATGGTGACTTCTTGGATA+AGG | + | chr1_2:77425422-77425441 | None:intergenic | 35.0% | |
| TTACACTTATGGTGACTTCT+TGG | + | chr1_2:77425428-77425447 | None:intergenic | 35.0% | |
| CATTGTGGCAGAAAAAGTTA+AGG | - | chr1_2:77425512-77425531 | Msa0094230:intron | 35.0% | |
| ! | AGAGTGAAATCAAAGCACTA+AGG | - | chr1_2:77425550-77425569 | Msa0094230:intron | 35.0% |
| ! | CATAAGCAGCTTTATCCATT+AGG | - | chr1_2:77425649-77425668 | Msa0094230:intron | 35.0% |
| !! | TTCCGCATCGTTCTAAATTT+TGG | - | chr1_2:77425765-77425784 | Msa0094230:intron | 35.0% |
| ! | GACCAAAATTTAGAACGATG+CGG | + | chr1_2:77425770-77425789 | None:intergenic | 35.0% |
| CTTCATTTCTCAGCTGAAAA+TGG | + | chr1_2:77425868-77425887 | None:intergenic | 35.0% | |
| TTTCAGCTGAGAAATGAAGT+CGG | - | chr1_2:77425869-77425888 | Msa0094230:CDS | 35.0% | |
| ! | AAGCAAAAGGTACACTGATT+TGG | - | chr1_2:77425932-77425951 | Msa0094230:CDS | 35.0% |
| ! | GGTTCTAGCAATCTTCAATA+TGG | + | chr1_2:77425985-77426004 | None:intergenic | 35.0% |
| ! | AGACGAAAAGAAAAGTGCAA+TGG | - | chr1_2:77426073-77426092 | Msa0094230:CDS | 35.0% |
| TTGTAATCTCAGCTTGAAGA+GGG | + | chr1_2:77426187-77426206 | None:intergenic | 35.0% | |
| ATTGTAATCTCAGCTTGAAG+AGG | + | chr1_2:77426188-77426207 | None:intergenic | 35.0% | |
| TTCATAGATAACAGCACTTC+AGG | - | chr1_2:77426325-77426344 | Msa0094230:intron | 35.0% | |
| ! | CAACTTCAAGAATCTTTTGG+CGG | + | chr1_2:77426631-77426650 | None:intergenic | 35.0% |
| AAAGCTTAGCCAAACTATTC+AGG | - | chr1_2:77426652-77426671 | Msa0094230:intron | 35.0% | |
| GCAATTCAGAAACTTGTCTT+TGG | + | chr1_2:77426733-77426752 | None:intergenic | 35.0% | |
| ! | TGATCTTTTGTGGTAACTTG+TGG | - | chr1_2:77426802-77426821 | Msa0094230:intron | 35.0% |
| ! | AGTATTTAAGGCATGAAAGC+AGG | + | chr1_2:77427047-77427066 | None:intergenic | 35.0% |
| AAATGTAGACAGAGATGCAA+AGG | - | chr1_2:77427490-77427509 | Msa0094230:CDS | 35.0% | |
| !! | TGTTATTTGGTGTTCACTTC+AGG | - | chr1_2:77427625-77427644 | Msa0094230:intron | 35.0% |
| AGTGAGACTAAAAACAATGG+AGG | - | chr1_2:77427658-77427677 | Msa0094230:intron | 35.0% | |
| AGACTAAAAACAATGGAGGA+AGG | - | chr1_2:77427662-77427681 | Msa0094230:intron | 35.0% | |
| AAACAACACAAACACTGTTG+GGG | - | chr1_2:77427829-77427848 | Msa0094230:CDS | 35.0% | |
| ! | TGTTGGGGGAAATTTAAAAC+TGG | - | chr1_2:77427844-77427863 | Msa0094230:CDS | 35.0% |
| CGGAAAACATGTTGAAGAAA+AGG | - | chr1_2:77427897-77427916 | Msa0094230:intron | 35.0% | |
| ! | AGTCATTTGGTTTCTTGCTT+TGG | + | chr1_2:77428066-77428085 | None:intergenic | 35.0% |
| ATTGAATGTAACCATGTGTC+AGG | + | chr1_2:77428328-77428347 | None:intergenic | 35.0% | |
| ! | GAGTTCGTTACTGTAGTTTT+AGG | - | chr1_2:77428482-77428501 | Msa0094230:intron | 35.0% |
| !!! | CAAATTCTGGAACTCCTTTT+TGG | + | chr1_2:77428969-77428988 | None:intergenic | 35.0% |
| AATTGAATACGAGGAACACT+TGG | - | chr1_2:77429091-77429110 | Msa0094230:CDS | 35.0% | |
| ! | ATTTCCCTTTCCCTCACTTT+TGG | + | chr1_2:77424759-77424778 | None:intergenic | 40.0% |
| AAAAGTGAGGGAAAGGGAAA+TGG | - | chr1_2:77424758-77424777 | Msa0094230:three_prime_UTR | 40.0% | |
| GTGAGGTGTGAAAAGCAATA+TGG | - | chr1_2:77424780-77424799 | Msa0094230:three_prime_UTR | 40.0% | |
| GTGTGAAAAGCAATATGGAG+AGG | - | chr1_2:77424785-77424804 | Msa0094230:three_prime_UTR | 40.0% | |
| CGATTAATCTCCAACACCAT+AGG | + | chr1_2:77424834-77424853 | None:intergenic | 40.0% | |
| TGAGAATCAAACTGACCAGA+TGG | + | chr1_2:77424959-77424978 | None:intergenic | 40.0% | |
| TCATGACTGAGACAATGATC+TGG | + | chr1_2:77425283-77425302 | None:intergenic | 40.0% | |
| CTGCTCACAAGTAGAAAGTT+TGG | + | chr1_2:77425321-77425340 | None:intergenic | 40.0% | |
| GTCTTTCATATCACATACGG+TGG | + | chr1_2:77425397-77425416 | None:intergenic | 40.0% | |
| !! | ACGGTTCTAAATTGAGGTTG+CGG | + | chr1_2:77425810-77425829 | None:intergenic | 40.0% |
| CATTTCTCAGCTGAAAATGG+TGG | + | chr1_2:77425865-77425884 | None:intergenic | 40.0% | |
| GAGAAATGAAGTCGGTAAAC+TGG | - | chr1_2:77425877-77425896 | Msa0094230:CDS | 40.0% | |
| AGAGGATCGTCTTAAGCAAA+AGG | - | chr1_2:77425919-77425938 | Msa0094230:CDS | 40.0% | |
| ! | GAACAGAATCGTCATCCTTT+TGG | + | chr1_2:77426145-77426164 | None:intergenic | 40.0% |
| TGTAATCTCAGCTTGAAGAG+GGG | + | chr1_2:77426186-77426205 | None:intergenic | 40.0% | |
| CCTTGCAAATGATTCCTTGT+TGG | + | chr1_2:77426250-77426269 | None:intergenic | 40.0% | |
| CCAACAAGGAATCATTTGCA+AGG | - | chr1_2:77426247-77426266 | Msa0094230:CDS | 40.0% | |
| TTTGCAAAGTGCACTAGAGA+AGG | - | chr1_2:77426415-77426434 | Msa0094230:intron | 40.0% | |
| GAGACAGATTGATATCTACC+AGG | - | chr1_2:77426481-77426500 | Msa0094230:intron | 40.0% | |
| GAAACGCAAAAAATCTTGCC+TGG | + | chr1_2:77426502-77426521 | None:intergenic | 40.0% | |
| TTACAACTACCACAAACAGG+AGG | - | chr1_2:77426580-77426599 | Msa0094230:intron | 40.0% | |
| CCTCAAGTTCCTGAATAGTT+TGG | + | chr1_2:77426664-77426683 | None:intergenic | 40.0% | |
| CCAAACTATTCAGGAACTTG+AGG | - | chr1_2:77426661-77426680 | Msa0094230:intron | 40.0% | |
| GAGGAAGTCATCTTAGCTAA+CGG | - | chr1_2:77426680-77426699 | Msa0094230:intron | 40.0% | |
| ATGAGAAAAGGACACTAGAG+AGG | - | chr1_2:77426846-77426865 | Msa0094230:intron | 40.0% | |
| TGAGAAAAGGACACTAGAGA+GGG | - | chr1_2:77426847-77426866 | Msa0094230:intron | 40.0% | |
| GCTAGCAAGGGTAAAAGTTT+CGG | - | chr1_2:77426871-77426890 | Msa0094230:intron | 40.0% | |
| TCGGCCAATAGAATTGCAAA+TGG | - | chr1_2:77426890-77426909 | Msa0094230:intron | 40.0% | |
| CAAATGGTGAAGCTAATGAG+TGG | - | chr1_2:77426906-77426925 | Msa0094230:intron | 40.0% | |
| GTGGAAGGATGAAAATGACA+AGG | - | chr1_2:77426925-77426944 | Msa0094230:intron | 40.0% | |
| AGAAGAGAGAAGGATTATGC+AGG | - | chr1_2:77426970-77426989 | Msa0094230:CDS | 40.0% | |
| ! | AAGAGGGTGTAATGCAAACT+AGG | - | chr1_2:77427156-77427175 | Msa0094230:intron | 40.0% |
| GTTGAACAGCTTCTCTTGAT+TGG | + | chr1_2:77427202-77427221 | None:intergenic | 40.0% | |
| CATCTCTGTCTACATTTGCA+AGG | + | chr1_2:77427487-77427506 | None:intergenic | 40.0% | |
| TATATCAGAGAGAACAGCCA+AGG | - | chr1_2:77427530-77427549 | Msa0094230:CDS | 40.0% | |
| GTTCGGGAACTTATGATGTT+AGG | + | chr1_2:77427722-77427741 | None:intergenic | 40.0% | |
| AACAACACAAACACTGTTGG+GGG | - | chr1_2:77427830-77427849 | Msa0094230:CDS | 40.0% | |
| !! | AGTTGCTGATAGTGGTGAAA+AGG | - | chr1_2:77427940-77427959 | Msa0094230:intron | 40.0% |
| ! | CTTCACTTTCAGCATTGAAC+TGG | + | chr1_2:77428003-77428022 | None:intergenic | 40.0% |
| AGCTTGCAAACTACTGTCTT+TGG | + | chr1_2:77428170-77428189 | None:intergenic | 40.0% | |
| ATACATAGCTAGTGAAAGCG+GGG | + | chr1_2:77428229-77428248 | None:intergenic | 40.0% | |
| GATACATAGCTAGTGAAAGC+GGG | + | chr1_2:77428230-77428249 | None:intergenic | 40.0% | |
| CGATACATAGCTAGTGAAAG+CGG | + | chr1_2:77428231-77428250 | None:intergenic | 40.0% | |
| GTCAGTATCAGAAACCAACA+TGG | - | chr1_2:77428298-77428317 | Msa0094230:intron | 40.0% | |
| TTTCTTCCACTCTACTTCCA+TGG | + | chr1_2:77428641-77428660 | None:intergenic | 40.0% | |
| ! | TATCAGCCACACTAACCTTT+TGG | + | chr1_2:77428752-77428771 | None:intergenic | 40.0% |
| !! | GACTGAAGCTCTGAAGGATA+AGG | - | chr1_2:77425575-77425594 | Msa0094230:intron | 45.0% |
| GAAGGATAAGGCCATAGAAG+AGG | - | chr1_2:77425587-77425606 | Msa0094230:intron | 45.0% | |
| TTGGTCCACAACTGCAATTG+TGG | - | chr1_2:77425784-77425803 | Msa0094230:intron | 45.0% | |
| CGAGAGACTTAGAGTTACAG+AGG | - | chr1_2:77425901-77425920 | Msa0094230:CDS | 45.0% | |
| !! | CCTTCTAAGTGTTGCTTCTG+CGG | + | chr1_2:77426111-77426130 | None:intergenic | 45.0% |
| CGCAGAAGCAACACTTAGAA+GGG | - | chr1_2:77426109-77426128 | Msa0094230:CDS | 45.0% | |
| ! | AAGGGTGCATGCAAACCAAA+AGG | - | chr1_2:77426127-77426146 | Msa0094230:CDS | 45.0% |
| ! | AAGCATTGCTAGATGCAGAG+AGG | - | chr1_2:77426390-77426409 | Msa0094230:intron | 45.0% |
| ! | TTTTGGTCTCCTCCTGTTTG+TGG | + | chr1_2:77426592-77426611 | None:intergenic | 45.0% |
| TGGTGAAGCTAATGAGTGGA+AGG | - | chr1_2:77426910-77426929 | Msa0094230:intron | 45.0% | |
| TCTTCTAGCCATTGCTTGAC+AGG | + | chr1_2:77426956-77426975 | None:intergenic | 45.0% | |
| AGCAATGGCTAGAAGAGAGA+AGG | - | chr1_2:77426960-77426979 | Msa0094230:CDS | 45.0% | |
| ATAAGTTCCCGAACAGCAAG+TGG | - | chr1_2:77427728-77427747 | Msa0094230:CDS | 45.0% | |
| !! | CAACCAAGAGCATCTGCTAT+TGG | - | chr1_2:77427776-77427795 | Msa0094230:CDS | 45.0% |
| CTTCCAATAGCAGATGCTCT+TGG | + | chr1_2:77427782-77427801 | None:intergenic | 45.0% | |
| GTATGATAGGCTGCAAAGAG+AGG | - | chr1_2:77428117-77428136 | Msa0094230:intron | 45.0% | |
| GAATGTAACCATGTGTCAGG+AGG | + | chr1_2:77428325-77428344 | None:intergenic | 45.0% | |
| TGACACTAACCTGAAGACAC+TGG | + | chr1_2:77428375-77428394 | None:intergenic | 45.0% | |
| GTTAGTGTCAGTGTCGTGTT+TGG | - | chr1_2:77428385-77428404 | Msa0094230:CDS | 45.0% | |
| AGATGCAGCTGCTAGAGAAA+AGG | - | chr1_2:77428669-77428688 | Msa0094230:intron | 45.0% | |
| GAAACACAGACTCCTCCAAA+AGG | - | chr1_2:77428734-77428753 | Msa0094230:intron | 45.0% | |
| ACTCCTCCAAAAGGTTAGTG+TGG | - | chr1_2:77428743-77428762 | Msa0094230:intron | 45.0% | |
| !! | TTATATTCATTATAATTTAT+AGG | + | chr1_2:77425031-77425050 | None:intergenic | 5.0% |
| TGAGGGAAAGGGAAATGGTG+AGG | - | chr1_2:77424763-77424782 | Msa0094230:three_prime_UTR | 50.0% | |
| ATAGGGTCTGAGAGGACAAC+TGG | + | chr1_2:77424816-77424835 | None:intergenic | 50.0% | |
| AGTTGTCCTCTCAGACCCTA+TGG | - | chr1_2:77424815-77424834 | Msa0094230:three_prime_UTR | 50.0% | |
| ! | AAGGTCGACTGAAGCTCTGA+AGG | - | chr1_2:77425569-77425588 | Msa0094230:intron | 50.0% |
| CCGCAGAAGCAACACTTAGA+AGG | - | chr1_2:77426108-77426127 | Msa0094230:CDS | 50.0% | |
| GGGGCAATGGCGTTATCAAT+TGG | + | chr1_2:77426167-77426186 | None:intergenic | 50.0% | |
| ACTAGAGAGGGAGCTAGCAA+GGG | - | chr1_2:77426859-77426878 | Msa0094230:intron | 50.0% | |
| AGGTCATGCCTGTCAAGCAA+TGG | - | chr1_2:77426945-77426964 | Msa0094230:intron | 50.0% | |
| CTTCAGCTGTGATTCTGCCT+TGG | + | chr1_2:77427550-77427569 | None:intergenic | 50.0% | |
| CAAGGCAGAATCACAGCTGA+AGG | - | chr1_2:77427548-77427567 | Msa0094230:CDS | 50.0% | |
| !! | TTGGACCACCACTTGCTGTT+CGG | + | chr1_2:77427739-77427758 | None:intergenic | 50.0% |
| TCGTCACTGCACGAGTCATT+TGG | + | chr1_2:77428079-77428098 | None:intergenic | 50.0% | |
| TGACTCGTGCAGTGACGATT+TGG | - | chr1_2:77428081-77428100 | Msa0094230:intron | 50.0% | |
| !! | TGCAGTGACGATTTGGTGTC+AGG | - | chr1_2:77428088-77428107 | Msa0094230:intron | 50.0% |
| ACATGTCCCGTGTCAATGTC+TGG | - | chr1_2:77428270-77428289 | Msa0094230:intron | 50.0% | |
| ACACGTGCCAGACATTGACA+CGG | + | chr1_2:77428280-77428299 | None:intergenic | 50.0% | |
| ATGTGTCAGGAGGACCATGT+TGG | + | chr1_2:77428315-77428334 | None:intergenic | 50.0% | |
| AACATGGTCCTCCTGACACA+TGG | - | chr1_2:77428314-77428333 | Msa0094230:intron | 50.0% | |
| ! | TGATGCACTGACCAAGTCCA+TGG | - | chr1_2:77428621-77428640 | Msa0094230:intron | 50.0% |
| CCACTCTACTTCCATGGACT+TGG | + | chr1_2:77428635-77428654 | None:intergenic | 50.0% | |
| CCAAGTCCATGGAAGTAGAG+TGG | - | chr1_2:77428632-77428651 | Msa0094230:intron | 50.0% | |
| ! | CAGCCACACTAACCTTTTGG+AGG | + | chr1_2:77428749-77428768 | None:intergenic | 50.0% |
| !! | CTGGAACTCCTTTTTGGCAG+TGG | + | chr1_2:77428963-77428982 | None:intergenic | 50.0% |
| CCAACACCATAGGGTCTGAG+AGG | + | chr1_2:77424824-77424843 | None:intergenic | 55.0% | |
| CCTCTCAGACCCTATGGTGT+TGG | - | chr1_2:77424821-77424840 | Msa0094230:three_prime_UTR | 55.0% | |
| TGCGGCCACAATTGCAGTTG+TGG | + | chr1_2:77425792-77425811 | None:intergenic | 55.0% | |
| CTCAGCTTGAAGAGGGGCAA+TGG | + | chr1_2:77426180-77426199 | None:intergenic | 55.0% | |
| CACTAGAGAGGGAGCTAGCA+AGG | - | chr1_2:77426858-77426877 | Msa0094230:intron | 55.0% | |
| AGTTCCCGAACAGCAAGTGG+TGG | - | chr1_2:77427731-77427750 | Msa0094230:CDS | 55.0% | |
| !! | TGGACCACCACTTGCTGTTC+GGG | + | chr1_2:77427738-77427757 | None:intergenic | 55.0% |
| CACGTGCCAGACATTGACAC+GGG | + | chr1_2:77428279-77428298 | None:intergenic | 55.0% | |
| GGGTCTGAGAGGACAACTGG+AGG | + | chr1_2:77424813-77424832 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 77424753 | 77429192 | 77424753 | ID=Msa0094230;Name=Msa0094230 |
| chr1_2 | mRNA | 77424753 | 77429192 | 77424753 | ID=Msa0094230-mRNA-1;Parent=Msa0094230;Name=Msa0094230-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0.66|0.6|1|0.88|0.9|10|338|538 |
| chr1_2 | exon | 77424753 | 77425109 | 77424753 | ID=Msa0094230-mRNA-1:exon:27449;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77425190 | 77425329 | 77425190 | ID=Msa0094230-mRNA-1:exon:27448;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77425807 | 77426298 | 77425807 | ID=Msa0094230-mRNA-1:exon:27447;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77426954 | 77427100 | 77426954 | ID=Msa0094230-mRNA-1:exon:27446;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77427191 | 77427346 | 77427191 | ID=Msa0094230-mRNA-1:exon:27445;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77427395 | 77427613 | 77427395 | ID=Msa0094230-mRNA-1:exon:27444;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77427725 | 77427895 | 77427725 | ID=Msa0094230-mRNA-1:exon:27443;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77428005 | 77428070 | 77428005 | ID=Msa0094230-mRNA-1:exon:27442;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77428337 | 77428422 | 77428337 | ID=Msa0094230-mRNA-1:exon:27441;Parent=Msa0094230-mRNA-1 |
| chr1_2 | exon | 77429072 | 77429192 | 77429072 | ID=Msa0094230-mRNA-1:exon:27440;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77429072 | 77429192 | 77429072 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77428337 | 77428422 | 77428337 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77428005 | 77428070 | 77428005 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77427725 | 77427895 | 77427725 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77427395 | 77427613 | 77427395 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77427191 | 77427346 | 77427191 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77426954 | 77427100 | 77426954 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77425807 | 77426298 | 77425807 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77425190 | 77425329 | 77425190 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | CDS | 77425091 | 77425109 | 77425091 | ID=Msa0094230-mRNA-1:cds;Parent=Msa0094230-mRNA-1 |
| chr1_2 | three_prime_UTR | 77424753 | 77425090 | 77424753 | ID=Msa0094230-mRNA-1:three_prime_utr;Parent=Msa0094230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
