Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000149.t1 | XP_003610719.1 | 88.4 | 310 | 20 | 4 | 1 | 297 | 1 | 307 | 1.40E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000149.t1 | A0LHG0 | 38.0 | 192 | 96 | 6 | 13 | 192 | 2 | 182 | 1.2e-27 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000149.t1 | G7K2E3 | 88.4 | 310 | 20 | 4 | 1 | 297 | 1 | 307 | 9.8e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000149 | MS.gene057003 | PPI |
| MS.gene000149 | MS.gene85230 | PPI |
| MS.gene051956 | MS.gene000149 | PPI |
| MS.gene76157 | MS.gene000149 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000149.t1 | MTR_5g006290 | 88.387 | 310 | 20 | 4 | 1 | 297 | 1 | 307 | 0.0 | 554 |
| MS.gene000149.t1 | MTR_5g006290 | 86.614 | 254 | 18 | 4 | 1 | 241 | 1 | 251 | 1.14e-157 | 441 |
| MS.gene000149.t1 | MTR_1g104500 | 66.774 | 310 | 86 | 5 | 1 | 297 | 1 | 306 | 1.24e-150 | 424 |
| MS.gene000149.t1 | MTR_5g006300 | 75.502 | 249 | 36 | 4 | 12 | 241 | 8 | 250 | 1.00e-131 | 375 |
| MS.gene000149.t1 | MTR_2g099720 | 33.127 | 323 | 165 | 7 | 14 | 288 | 53 | 372 | 9.33e-56 | 184 |
| MS.gene000149.t1 | MTR_1g104513 | 54.430 | 79 | 33 | 2 | 198 | 274 | 1 | 78 | 4.38e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000149.t1 | AT4G14930 | 53.821 | 301 | 118 | 6 | 14 | 296 | 16 | 313 | 1.43e-110 | 323 |
| MS.gene000149.t1 | AT4G14930 | 52.878 | 278 | 109 | 7 | 14 | 272 | 16 | 290 | 5.64e-98 | 291 |
| MS.gene000149.t1 | AT1G72880 | 33.754 | 317 | 163 | 7 | 14 | 285 | 63 | 377 | 1.62e-52 | 176 |
| MS.gene000149.t1 | AT1G72880 | 33.754 | 317 | 163 | 7 | 14 | 285 | 63 | 377 | 1.62e-52 | 176 |
Find 69 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTCCTTCGCTGTTTC+TGG | 0.110041 | 5.4:-2032653 | MS.gene000149:CDS |
| TCGTACTGAGTGGCATAAAT+AGG | 0.244132 | 5.4:-2032568 | MS.gene000149:CDS |
| GCTGCCGACGAGAGGTGTTT+AGG | 0.296045 | 5.4:+2029648 | None:intergenic |
| CGTACTGAGTGGCATAAATA+GGG | 0.336503 | 5.4:-2032567 | MS.gene000149:CDS |
| CGCTCCTGGCTTAAGAGCTT+TGG | 0.339950 | 5.4:-2032807 | MS.gene000149:CDS |
| ACTGCTGATTTCTCAGTATC+AGG | 0.346261 | 5.4:+2032737 | None:intergenic |
| GCCAAACAAGTTCATATTCA+TGG | 0.356932 | 5.4:-2032680 | MS.gene000149:CDS |
| CTGCCGACGAGAGGTGTTTA+GGG | 0.359627 | 5.4:+2029649 | None:intergenic |
| CCCGCTGATTGCACTTCTCT+TGG | 0.364382 | 5.4:-2032626 | MS.gene000149:CDS |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | 5.4:+2030231 | None:intergenic |
| ACCAGTACTGAGTTTATGAT+TGG | 0.387156 | 5.4:+2031674 | None:intergenic |
| TTGTAGCCAATCCTCAAAAT+AGG | 0.388766 | 5.4:+2029677 | None:intergenic |
| TCCATGAATATGAACTTGTT+TGG | 0.390536 | 5.4:+2032679 | None:intergenic |
| TCATATGAAATGGAGATAGA+AGG | 0.392459 | 5.4:+2031992 | None:intergenic |
| AACATACCAGTCATATGAAA+TGG | 0.413011 | 5.4:+2031982 | None:intergenic |
| TGAACTTGTTTGGCAGCTAT+AGG | 0.420107 | 5.4:+2032689 | None:intergenic |
| TATTCTATGTCCAGGGTTGA+AGG | 0.439800 | 5.4:-2031743 | MS.gene000149:intron |
| TGTAGTAGGAAAGAGTGATT+TGG | 0.440018 | 5.4:+2032598 | None:intergenic |
| GGGTTACAAGCTAACGAGGC+AGG | 0.444468 | 5.4:-2030373 | MS.gene000149:CDS |
| ATTACTGTAACTGCTCTTGC+TGG | 0.445809 | 5.4:-2029729 | MS.gene000149:CDS |
| TCTGTATCATCATCATAATC+AGG | 0.448757 | 5.4:+2029857 | None:intergenic |
| CTATCTCCATTTCATATGAC+TGG | 0.452640 | 5.4:-2031988 | MS.gene000149:intron |
| TACCTTATGGTTAGCAACAT+TGG | 0.464242 | 5.4:+2031595 | None:intergenic |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 5.4:-2032043 | MS.gene000149:intron |
| GGGTAAAAGTATCTTTAAGA+TGG | 0.475283 | 5.4:-2030352 | MS.gene000149:CDS |
| AACCAATGTTGCTAACCATA+AGG | 0.509023 | 5.4:-2031597 | MS.gene000149:intron |
| AGTACGAGATCGGGTGTAGT+AGG | 0.510543 | 5.4:+2032584 | None:intergenic |
| ATGCCACTCAGTACGAGATC+GGG | 0.512957 | 5.4:+2032575 | None:intergenic |
| GACGATGGAATCGACGCTCC+TGG | 0.513493 | 5.4:-2032821 | MS.gene000149:CDS |
| TCCAATCATAAACTCAGTAC+TGG | 0.516828 | 5.4:-2031675 | MS.gene000149:CDS |
| TTATGGTTAGCAACATTGGT+TGG | 0.519228 | 5.4:+2031599 | None:intergenic |
| AAAGTATCTTTAAGATGGGA+TGG | 0.524804 | 5.4:-2030347 | MS.gene000149:CDS |
| TACAGATCACAAATCTTTGA+AGG | 0.525967 | 5.4:-2029840 | MS.gene000149:CDS |
| TATCATCATCATAATCAGGT+AGG | 0.530713 | 5.4:+2029861 | None:intergenic |
| TATGCCACTCAGTACGAGAT+CGG | 0.530893 | 5.4:+2032574 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+GGG | 0.542844 | 5.4:-2030351 | MS.gene000149:CDS |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | 5.4:-2032032 | MS.gene000149:CDS |
| AGAAGGGATATTGTTGAAGA+AGG | 0.544062 | 5.4:+2032009 | None:intergenic |
| GACACCAAAGCTCTTAAGCC+AGG | 0.545144 | 5.4:+2032803 | None:intergenic |
| TCCAAGAGAAGTGCAATCAG+CGG | 0.552211 | 5.4:+2032625 | None:intergenic |
| CATATGAAATGGAGATAGAA+GGG | 0.554398 | 5.4:+2031993 | None:intergenic |
| CCAAGAGAAGTGCAATCAGC+GGG | 0.556534 | 5.4:+2032626 | None:intergenic |
| AATGTTGATGCGATGGAAGA+GGG | 0.561341 | 5.4:-2032887 | None:intergenic |
| AGAAACAGCGAAGGAAGAAA+CGG | 0.565756 | 5.4:+2032655 | None:intergenic |
| GATCACAAATCTTTGAAGGC+GGG | 0.566869 | 5.4:-2029836 | MS.gene000149:CDS |
| AATGCAAACTTGTGCAGCAA+GGG | 0.572061 | 5.4:+2031697 | None:intergenic |
| ATAAAGAAACAAAGCTACCC+TGG | 0.585747 | 5.4:-2031647 | MS.gene000149:CDS |
| GAATGTTGATGCGATGGAAG+AGG | 0.589743 | 5.4:-2032888 | None:intergenic |
| AACATTAACAATAAGAGAGG+AGG | 0.591884 | 5.4:-2032863 | MS.gene000149:CDS |
| ATCATCATCATAATCAGGTA+GGG | 0.598459 | 5.4:+2029862 | None:intergenic |
| GGTTACAAGCTAACGAGGCA+GGG | 0.604854 | 5.4:-2030372 | MS.gene000149:CDS |
| GGTAACATTAACAATAAGAG+AGG | 0.605178 | 5.4:-2032866 | MS.gene000149:CDS |
| CAGTTGGTCACAGCATCACA+TGG | 0.611704 | 5.4:-2032718 | MS.gene000149:CDS |
| GAATGCAAACTTGTGCAGCA+AGG | 0.611800 | 5.4:+2031696 | None:intergenic |
| ATTATAAAGCTGCCGACGAG+AGG | 0.616494 | 5.4:+2029640 | None:intergenic |
| TGAAGGAAAGAGTAATCCAC+AGG | 0.618509 | 5.4:-2031726 | MS.gene000149:CDS |
| GGGAGTACCAGAAACAGCGA+AGG | 0.623127 | 5.4:+2032646 | None:intergenic |
| GATACTGAGAAATCAGCAGT+TGG | 0.641119 | 5.4:-2032734 | MS.gene000149:CDS |
| CAAGTCACCTCTGAGACAGA+AGG | 0.641811 | 5.4:-2030321 | MS.gene000149:CDS |
| TCTTCGTCCTTCTGTCTCAG+AGG | 0.641863 | 5.4:+2030314 | None:intergenic |
| GCAGCAAGGGCAAAGTCCTG+TGG | 0.646391 | 5.4:+2031710 | None:intergenic |
| TATCCCTAAACACCTCTCGT+CGG | 0.656627 | 5.4:-2029652 | MS.gene000149:CDS |
| GTATCTTTAAGATGGGATGG+AGG | 0.656769 | 5.4:-2030344 | MS.gene000149:CDS |
| AGATCACAAATCTTTGAAGG+CGG | 0.659879 | 5.4:-2029837 | MS.gene000149:CDS |
| TCTTGCTGGTCTCTCTCATG+CGG | 0.662540 | 5.4:-2029715 | MS.gene000149:CDS |
| ATTCTGATAACAAACGACGA+TGG | 0.666629 | 5.4:-2032836 | MS.gene000149:CDS |
| GTACTGAGTGGCATAAATAG+GGG | 0.669770 | 5.4:-2032566 | MS.gene000149:intron |
| AAAAGGGTTACAAGCTAACG+AGG | 0.689847 | 5.4:-2030377 | MS.gene000149:intron |
| ACACCCGATCTCGTACTGAG+TGG | 0.722593 | 5.4:-2032578 | MS.gene000149:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAAAAAAAACAATTTA+CGG | + | chr5.4:2030128-2030147 | None:intergenic | 10.0% |
| !!! | AAATTTTTTATTGTTACTTT+AGG | - | chr5.4:2031226-2031245 | MS.gene000149:intron | 10.0% |
| !! | AAAATAGTATAAATCATAAG+AGG | + | chr5.4:2030368-2030387 | None:intergenic | 15.0% |
| !! | AAATAGTATAAATCATAAGA+GGG | + | chr5.4:2030367-2030386 | None:intergenic | 15.0% |
| !! | ATATTAAATGAAAATACAGA+AGG | + | chr5.4:2031996-2032015 | None:intergenic | 15.0% |
| !!! | AGAATATAATCAATTTTCTT+AGG | + | chr5.4:2031319-2031338 | None:intergenic | 15.0% |
| !!! | TAAATAGAACAATTTTTAAC+AGG | + | chr5.4:2030268-2030287 | None:intergenic | 15.0% |
| !!! | TACTATTTTTATTTTTGCTA+AGG | - | chr5.4:2030379-2030398 | MS.gene000149:intron | 15.0% |
| !! | AAAGTTCAACTTAACAAATA+TGG | + | chr5.4:2030599-2030618 | None:intergenic | 20.0% |
| !! | AAATGTAAACTTCAATATGT+AGG | + | chr5.4:2032019-2032038 | None:intergenic | 20.0% |
| !! | AACTACATTATTATTCATTG+CGG | + | chr5.4:2032597-2032616 | None:intergenic | 20.0% |
| !! | AAGATTTATATGACAATTTC+TGG | + | chr5.4:2031367-2031386 | None:intergenic | 20.0% |
| !! | AAGTTTACATTTGTATTCAA+AGG | - | chr5.4:2032027-2032046 | MS.gene000149:CDS | 20.0% |
| !! | AATAAGCATAATACATGATA+AGG | - | chr5.4:2031147-2031166 | MS.gene000149:intron | 20.0% |
| !! | ACAATTATAAGCTGATTAAT+TGG | + | chr5.4:2030627-2030646 | None:intergenic | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | + | chr5.4:2030937-2030956 | None:intergenic | 20.0% |
| !! | ATCTTCTGTAACTAATTTAT+TGG | - | chr5.4:2032097-2032116 | MS.gene000149:intron | 20.0% |
| !! | CTATTTATTTCAAATGACAA+AGG | - | chr5.4:2030281-2030300 | MS.gene000149:CDS | 20.0% |
| !! | GATTTATTCATAATATATGC+TGG | - | chr5.4:2031171-2031190 | MS.gene000149:intron | 20.0% |
| !!! | AGCAATGTAAATTATTTCTT+TGG | + | chr5.4:2030185-2030204 | None:intergenic | 20.0% |
| !!! | GCAATGTAAATTATTTCTTT+GGG | + | chr5.4:2030184-2030203 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCAAACTTTTGT+AGG | - | chr5.4:2032622-2032641 | MS.gene000149:CDS | 20.0% |
| ! | AAAGTGTAAAGGTGATAAAA+TGG | + | chr5.4:2030007-2030026 | None:intergenic | 25.0% |
| ! | AACATAAATTAATGCTGTGA+TGG | - | chr5.4:2031124-2031143 | MS.gene000149:intron | 25.0% |
| ! | AACTAAAAAACTTACTTGGA+TGG | - | chr5.4:2032541-2032560 | MS.gene000149:intron | 25.0% |
| ! | ACACTAACAAACAATATAAG+TGG | + | chr5.4:2030075-2030094 | None:intergenic | 25.0% |
| ! | AGCATATTGTCTAATACTTT+CGG | - | chr5.4:2032370-2032389 | MS.gene000149:intron | 25.0% |
| ! | ATATTCAAAAAACATCTTCC+AGG | + | chr5.4:2030890-2030909 | None:intergenic | 25.0% |
| ! | ATTATGCAACATTTCAATGA+AGG | + | chr5.4:2031882-2031901 | None:intergenic | 25.0% |
| ! | GAAGAACTAAAAAACTTACT+TGG | - | chr5.4:2032537-2032556 | MS.gene000149:intron | 25.0% |
| ! | GTATATATTGTCATGATATC+AGG | + | chr5.4:2031775-2031794 | None:intergenic | 25.0% |
| ! | TACTCAAATAAACAAACACA+CGG | + | chr5.4:2031657-2031676 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATCTTCCA+GGG | + | chr5.4:2030889-2030908 | None:intergenic | 25.0% |
| ! | TCATTGAAATGTTGCATAAT+GGG | - | chr5.4:2031882-2031901 | MS.gene000149:intron | 25.0% |
| ! | TGAAAAGCTATTGCTATAAA+AGG | + | chr5.4:2030728-2030747 | None:intergenic | 25.0% |
| ! | TTATGCAACATTTCAATGAA+GGG | + | chr5.4:2031881-2031900 | None:intergenic | 25.0% |
| ! | TTCATTGAAATGTTGCATAA+TGG | - | chr5.4:2031881-2031900 | MS.gene000149:intron | 25.0% |
| ! | TTGTGTGTTATGATAATTTG+TGG | - | chr5.4:2031532-2031551 | MS.gene000149:intron | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | - | chr5.4:2031662-2031681 | MS.gene000149:CDS | 25.0% |
| !! | AATTTGACAGGCATTATTTT+AGG | - | chr5.4:2031250-2031269 | MS.gene000149:intron | 25.0% |
| !! | ATAGCAAATTTTTATCCTTG+TGG | - | chr5.4:2031696-2031715 | MS.gene000149:CDS | 25.0% |
| !! | TGTGTGTTATGATAATTTGT+GGG | - | chr5.4:2031533-2031552 | MS.gene000149:intron | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+GGG | - | chr5.4:2032165-2032184 | MS.gene000149:intron | 25.0% |
| !!! | TTTAGTTCTTCCATATAACT+TGG | + | chr5.4:2032528-2032547 | None:intergenic | 25.0% |
| AACATACCAGTCATATGAAA+TGG | + | chr5.4:2030537-2030556 | None:intergenic | 30.0% | |
| AACATTAACAATAAGAGAGG+AGG | - | chr5.4:2029653-2029672 | MS.gene000149:CDS | 30.0% | |
| AACTTACGCACAATAAAACT+TGG | + | chr5.4:2031344-2031363 | None:intergenic | 30.0% | |
| AATGAATGTCTCGAGTATTA+TGG | - | chr5.4:2030659-2030678 | MS.gene000149:intron | 30.0% | |
| ACAGATACACCTAAAAACTT+TGG | - | chr5.4:2032246-2032265 | MS.gene000149:intron | 30.0% | |
| ACTAATTACACAAACAGTGA+CGG | + | chr5.4:2030439-2030458 | None:intergenic | 30.0% | |
| ACTCAAATAAACAAACACAC+GGG | + | chr5.4:2031656-2031675 | None:intergenic | 30.0% | |
| ATCATCATCATAATCAGGTA+GGG | + | chr5.4:2032657-2032676 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATAGAA+GGG | + | chr5.4:2030526-2030545 | None:intergenic | 30.0% | |
| CCAAAACAATAAATTCCACA+AGG | + | chr5.4:2031714-2031733 | None:intergenic | 30.0% | |
| CTAGTTAACTCCTTATGAAA+GGG | + | chr5.4:2031458-2031477 | None:intergenic | 30.0% | |
| CTTTCCACTAATTTACAATG+CGG | + | chr5.4:2031800-2031819 | None:intergenic | 30.0% | |
| GAAATAGATGCCAAGTTATA+TGG | - | chr5.4:2032515-2032534 | MS.gene000149:intron | 30.0% | |
| GCATTGTAAATTAGTGGAAA+GGG | - | chr5.4:2031799-2031818 | MS.gene000149:intron | 30.0% | |
| GGTAACATTAACAATAAGAG+AGG | - | chr5.4:2029650-2029669 | MS.gene000149:CDS | 30.0% | |
| TACAGATCACAAATCTTTGA+AGG | - | chr5.4:2032676-2032695 | MS.gene000149:CDS | 30.0% | |
| TAGTCAAGCACAATATTAAG+CGG | + | chr5.4:2032427-2032446 | None:intergenic | 30.0% | |
| TAGTTAACTCCTTATGAAAG+GGG | + | chr5.4:2031457-2031476 | None:intergenic | 30.0% | |
| TATCATCATCATAATCAGGT+AGG | + | chr5.4:2032658-2032677 | None:intergenic | 30.0% | |
| TATCATGTTTGACCATTTGA+AGG | - | chr5.4:2030749-2030768 | MS.gene000149:intron | 30.0% | |
| TATGCAACATTTCAATGAAG+GGG | + | chr5.4:2031880-2031899 | None:intergenic | 30.0% | |
| TATGTTAAGCGATCAAAACA+CGG | + | chr5.4:2031105-2031124 | None:intergenic | 30.0% | |
| TCATATGAAATGGAGATAGA+AGG | + | chr5.4:2030527-2030546 | None:intergenic | 30.0% | |
| TCTAGTTAACTCCTTATGAA+AGG | + | chr5.4:2031459-2031478 | None:intergenic | 30.0% | |
| TCTGTATCATCATCATAATC+AGG | + | chr5.4:2032662-2032681 | None:intergenic | 30.0% | |
| TTATTATTCATTGCGGAAAG+AGG | + | chr5.4:2032590-2032609 | None:intergenic | 30.0% | |
| ! | AACAGCATCTTTTTGTAACA+AGG | + | chr5.4:2031912-2031931 | None:intergenic | 30.0% |
| ! | ACAGCATCTTTTTGTAACAA+GGG | + | chr5.4:2031911-2031930 | None:intergenic | 30.0% |
| ! | AGGACTATAGCTCTATTAAT+AGG | - | chr5.4:2031270-2031289 | MS.gene000149:intron | 30.0% |
| ! | CCTTGTGGAATTTATTGTTT+TGG | - | chr5.4:2031711-2031730 | MS.gene000149:CDS | 30.0% |
| ! | GATGATGTACCAAAGTTTTT+AGG | + | chr5.4:2032258-2032277 | None:intergenic | 30.0% |
| ! | GTTACTTTAGGTAATTTGAC+AGG | - | chr5.4:2031238-2031257 | MS.gene000149:intron | 30.0% |
| ! | TCCATGAATATGAACTTGTT+TGG | + | chr5.4:2029840-2029859 | None:intergenic | 30.0% |
| ! | TTCAAACTTTTGTAGGTAAG+AGG | - | chr5.4:2032629-2032648 | MS.gene000149:CDS | 30.0% |
| !! | AAAATTTGCTATTCAACCAG+TGG | + | chr5.4:2031688-2031707 | None:intergenic | 30.0% |
| !! | AAAGTATCTTTAAGATGGGA+TGG | - | chr5.4:2032169-2032188 | MS.gene000149:intron | 30.0% |
| !! | GGGTAAAAGTATCTTTAAGA+TGG | - | chr5.4:2032164-2032183 | MS.gene000149:intron | 30.0% |
| !!! | GTTTTTAGGTGTATCTGTAT+TGG | + | chr5.4:2032244-2032263 | None:intergenic | 30.0% |
| AACCAATGTTGCTAACCATA+AGG | - | chr5.4:2030919-2030938 | MS.gene000149:intron | 35.0% | |
| ACTACCGCATTGTAAATTAG+TGG | - | chr5.4:2031793-2031812 | MS.gene000149:intron | 35.0% | |
| AGAAGGGATATTGTTGAAGA+AGG | + | chr5.4:2030510-2030529 | None:intergenic | 35.0% | |
| ATAAAGAAACAAAGCTACCC+TGG | - | chr5.4:2030869-2030888 | MS.gene000149:intron | 35.0% | |
| ATGCAACATTTCAATGAAGG+GGG | + | chr5.4:2031879-2031898 | None:intergenic | 35.0% | |
| ATTCTGATAACAAACGACGA+TGG | - | chr5.4:2029680-2029699 | MS.gene000149:CDS | 35.0% | |
| CGCATTGTAAATTAGTGGAA+AGG | - | chr5.4:2031798-2031817 | MS.gene000149:intron | 35.0% | |
| CGGTAGTTATATCCAAAGAA+TGG | - | chr5.4:2031426-2031445 | MS.gene000149:intron | 35.0% | |
| CTATCTCCATTTCATATGAC+TGG | - | chr5.4:2030528-2030547 | MS.gene000149:intron | 35.0% | |
| CTCAAATAAACAAACACACG+GGG | + | chr5.4:2031655-2031674 | None:intergenic | 35.0% | |
| CTCGCAAATAAAAGATGTTC+AGG | + | chr5.4:2032288-2032307 | None:intergenic | 35.0% | |
| GACATAGAATAGCCTTCAAA+TGG | + | chr5.4:2030764-2030783 | None:intergenic | 35.0% | |
| GCCAAACAAGTTCATATTCA+TGG | - | chr5.4:2029836-2029855 | MS.gene000149:CDS | 35.0% | |
| GTGTAAAGGTGATAAAATGG+TGG | + | chr5.4:2030004-2030023 | None:intergenic | 35.0% | |
| TAACTACCGTGATTTCATAG+AGG | + | chr5.4:2031415-2031434 | None:intergenic | 35.0% | |
| TACCTTATGGTTAGCAACAT+TGG | + | chr5.4:2030924-2030943 | None:intergenic | 35.0% | |
| TCCAATCATAAACTCAGTAC+TGG | - | chr5.4:2030841-2030860 | MS.gene000149:intron | 35.0% | |
| TGTAGTAGGAAAGAGTGATT+TGG | + | chr5.4:2029921-2029940 | None:intergenic | 35.0% | |
| TTAGGCTTGTCTCTAATACA+TGG | + | chr5.4:2031301-2031320 | None:intergenic | 35.0% | |
| TTATGGTTAGCAACATTGGT+TGG | + | chr5.4:2030920-2030939 | None:intergenic | 35.0% | |
| TTGTAGCCAATCCTCAAAAT+AGG | + | chr5.4:2032842-2032861 | None:intergenic | 35.0% | |
| ! | ACCAGTACTGAGTTTATGAT+TGG | + | chr5.4:2030845-2030864 | None:intergenic | 35.0% |
| ! | AGATCACAAATCTTTGAAGG+CGG | - | chr5.4:2032679-2032698 | MS.gene000149:CDS | 35.0% |
| ! | AGATTGTCAGACCTATTTTG+AGG | - | chr5.4:2032828-2032847 | MS.gene000149:CDS | 35.0% |
| ! | TTGAAATGTTGCATAATGGG+CGG | - | chr5.4:2031885-2031904 | MS.gene000149:intron | 35.0% |
| !! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5.4:2032290-2032309 | MS.gene000149:intron | 35.0% |
| !! | GCTCTTCTTCTAAAGTGTAA+AGG | + | chr5.4:2030018-2030037 | None:intergenic | 35.0% |
| !! | GGTTCTAAGATGATTCTCTT+AGG | - | chr5.4:2031192-2031211 | MS.gene000149:intron | 35.0% |
| AAAAGGGTTACAAGCTAACG+AGG | - | chr5.4:2032139-2032158 | MS.gene000149:intron | 40.0% | |
| AAAGGGGAATTGCCATTCTT+TGG | + | chr5.4:2031441-2031460 | None:intergenic | 40.0% | |
| AACATTTGATGTGGAATCCC+AGG | - | chr5.4:2031600-2031619 | MS.gene000149:CDS | 40.0% | |
| AATAAACAAACACACGGGGA+TGG | + | chr5.4:2031651-2031670 | None:intergenic | 40.0% | |
| AATGCAAACTTGTGCAGCAA+GGG | + | chr5.4:2030822-2030841 | None:intergenic | 40.0% | |
| ACATTTCAATGAAGGGGGAA+AGG | + | chr5.4:2031874-2031893 | None:intergenic | 40.0% | |
| AGAAACAGCGAAGGAAGAAA+CGG | + | chr5.4:2029864-2029883 | None:intergenic | 40.0% | |
| AGGAGTTAACTAGACCTATC+TGG | - | chr5.4:2031465-2031484 | MS.gene000149:intron | 40.0% | |
| ATAAACAAACACACGGGGAT+GGG | + | chr5.4:2031650-2031669 | None:intergenic | 40.0% | |
| ATAAATAGGGGTAGCAACTG+CGG | - | chr5.4:2029962-2029981 | MS.gene000149:intron | 40.0% | |
| ATGGCAATTCCCCTTTCATA+AGG | - | chr5.4:2031445-2031464 | MS.gene000149:intron | 40.0% | |
| ATTACTCTTTCCTTCAACCC+TGG | + | chr5.4:2030786-2030805 | None:intergenic | 40.0% | |
| ATTACTGTAACTGCTCTTGC+TGG | - | chr5.4:2032787-2032806 | MS.gene000149:CDS | 40.0% | |
| CGTACTGAGTGGCATAAATA+GGG | - | chr5.4:2029949-2029968 | MS.gene000149:intron | 40.0% | |
| GAGGGTCATTTCAAATTTCG+AGG | + | chr5.4:2030349-2030368 | None:intergenic | 40.0% | |
| GATACTGAGAAATCAGCAGT+TGG | - | chr5.4:2029782-2029801 | MS.gene000149:intron | 40.0% | |
| GGTGGTGAAAACATTTGATG+TGG | - | chr5.4:2031591-2031610 | MS.gene000149:intron | 40.0% | |
| GTACTGAGTGGCATAAATAG+GGG | - | chr5.4:2029950-2029969 | MS.gene000149:intron | 40.0% | |
| GTCTTTCGTAATCACCAGAT+AGG | + | chr5.4:2031482-2031501 | None:intergenic | 40.0% | |
| GTGTTGAGCTGTTGATATGT+TGG | - | chr5.4:2031958-2031977 | MS.gene000149:intron | 40.0% | |
| TATTCTATGTCCAGGGTTGA+AGG | - | chr5.4:2030773-2030792 | MS.gene000149:intron | 40.0% | |
| TCGTACTGAGTGGCATAAAT+AGG | - | chr5.4:2029948-2029967 | MS.gene000149:intron | 40.0% | |
| TCGTCTGTGCATCTGAAAAA+GGG | - | chr5.4:2032123-2032142 | MS.gene000149:intron | 40.0% | |
| TCGTTGTCTCTTCATAGCTT+AGG | + | chr5.4:2030315-2030334 | None:intergenic | 40.0% | |
| TCTCGAGTATTATGGCTTAC+TGG | - | chr5.4:2030667-2030686 | MS.gene000149:intron | 40.0% | |
| TGAAGGAAAGAGTAATCCAC+AGG | - | chr5.4:2030790-2030809 | MS.gene000149:intron | 40.0% | |
| TGAAGGCTATTCTATGTCCA+GGG | - | chr5.4:2030766-2030785 | MS.gene000149:intron | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | + | chr5.4:2030466-2030485 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | - | chr5.4:2030461-2030480 | MS.gene000149:intron | 40.0% | |
| TTGAAGGCTATTCTATGTCC+AGG | - | chr5.4:2030765-2030784 | MS.gene000149:intron | 40.0% | |
| ! | CCATCAATCCTTTTCCTACT+CGG | + | chr5.4:2031011-2031030 | None:intergenic | 40.0% |
| ! | GATCACAAATCTTTGAAGGC+GGG | - | chr5.4:2032680-2032699 | MS.gene000149:CDS | 40.0% |
| ! | GTTTTCTTAACCAGTGAACG+AGG | + | chr5.4:2031506-2031525 | None:intergenic | 40.0% |
| ! | TGAACTTGTTTGGCAGCTAT+AGG | + | chr5.4:2029830-2029849 | None:intergenic | 40.0% |
| !! | ACTGCTGATTTCTCAGTATC+AGG | + | chr5.4:2029782-2029801 | None:intergenic | 40.0% |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5.4:2032294-2032313 | MS.gene000149:intron | 40.0% |
| !! | GTATCTTTAAGATGGGATGG+AGG | - | chr5.4:2032172-2032191 | MS.gene000149:intron | 40.0% |
| !! | GTCAGACCTATTTTGAGGAT+TGG | - | chr5.4:2032833-2032852 | MS.gene000149:CDS | 40.0% |
| !! | GTGACGGACAAAAATTTCTG+TGG | + | chr5.4:2030423-2030442 | None:intergenic | 40.0% |
| CCGAGTAGGAAAAGGATTGA+TGG | - | chr5.4:2031008-2031027 | MS.gene000149:intron | 45.0% | |
| GAATGCAAACTTGTGCAGCA+AGG | + | chr5.4:2030823-2030842 | None:intergenic | 45.0% | |
| GAGGTTGACTAGTGACTACA+TGG | + | chr5.4:2030987-2031006 | None:intergenic | 45.0% | |
| GTCGTCTGTGCATCTGAAAA+AGG | - | chr5.4:2032122-2032141 | MS.gene000149:intron | 45.0% | |
| GTGCCTGAGTAAACACTGAA+AGG | + | chr5.4:2030467-2030486 | None:intergenic | 45.0% | |
| GTGCTTGACTATGCTGTCAT+TGG | - | chr5.4:2032436-2032455 | MS.gene000149:intron | 45.0% | |
| TAAACAAACACACGGGGATG+GGG | + | chr5.4:2031649-2031668 | None:intergenic | 45.0% | |
| TATCCCTAAACACCTCTCGT+CGG | - | chr5.4:2032864-2032883 | MS.gene000149:CDS | 45.0% | |
| TATGCCACTCAGTACGAGAT+CGG | + | chr5.4:2029945-2029964 | None:intergenic | 45.0% | |
| ! | GTTTCTTCCTTCGCTGTTTC+TGG | - | chr5.4:2029863-2029882 | MS.gene000149:CDS | 45.0% |
| ! | GTTTTCACCACCAAACCACT+GGG | + | chr5.4:2031583-2031602 | None:intergenic | 45.0% |
| ! | TCCAAGAGAAGTGCAATCAG+CGG | + | chr5.4:2029894-2029913 | None:intergenic | 45.0% |
| ! | TGTTTTCACCACCAAACCAC+TGG | + | chr5.4:2031584-2031603 | None:intergenic | 45.0% |
| ! | TTTGAGTATGTGTTGGCCAC+TGG | - | chr5.4:2031669-2031688 | MS.gene000149:CDS | 45.0% |
| !! | AATCCTTTTCCTACTCGGTG+AGG | + | chr5.4:2031006-2031025 | None:intergenic | 45.0% |
| ACCGTGATTTCATAGAGGCG+AGG | + | chr5.4:2031410-2031429 | None:intergenic | 50.0% | |
| ACGAAAGACTCCTCGTTCAC+TGG | - | chr5.4:2031493-2031512 | MS.gene000149:intron | 50.0% | |
| ACTAGTCAACCTCACCGAGT+AGG | - | chr5.4:2030994-2031013 | MS.gene000149:intron | 50.0% | |
| AGTACGAGATCGGGTGTAGT+AGG | + | chr5.4:2029935-2029954 | None:intergenic | 50.0% | |
| ATGCCACTCAGTACGAGATC+GGG | + | chr5.4:2029944-2029963 | None:intergenic | 50.0% | |
| CAACCTCACCGAGTAGGAAA+AGG | - | chr5.4:2031000-2031019 | MS.gene000149:intron | 50.0% | |
| CAGTTGGTCACAGCATCACA+TGG | - | chr5.4:2029798-2029817 | MS.gene000149:intron | 50.0% | |
| GACACCAAAGCTCTTAAGCC+AGG | + | chr5.4:2029716-2029735 | None:intergenic | 50.0% | |
| GATGTTGCAACCCAGTGGTT+TGG | - | chr5.4:2031570-2031589 | MS.gene000149:intron | 50.0% | |
| GCCTCGCCTCTATGAAATCA+CGG | - | chr5.4:2031406-2031425 | MS.gene000149:intron | 50.0% | |
| GCGATCAAAACACGGCTATC+TGG | + | chr5.4:2031097-2031116 | None:intergenic | 50.0% | |
| GGTTACAAGCTAACGAGGCA+GGG | - | chr5.4:2032144-2032163 | MS.gene000149:intron | 50.0% | |
| GTGGAAAGGGTGACTACTTC+TGG | - | chr5.4:2031812-2031831 | MS.gene000149:intron | 50.0% | |
| TCTTCGTCCTTCTGTCTCAG+AGG | + | chr5.4:2032205-2032224 | None:intergenic | 50.0% | |
| TGCACACTCTACAAGCAGAG+AGG | + | chr5.4:2031844-2031863 | None:intergenic | 50.0% | |
| ! | CCAAGAGAAGTGCAATCAGC+GGG | + | chr5.4:2029893-2029912 | None:intergenic | 50.0% |
| ! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5.4:2030473-2030492 | MS.gene000149:intron | 50.0% |
| ! | TCTTGCTGGTCTCTCTCATG+CGG | - | chr5.4:2032801-2032820 | MS.gene000149:CDS | 50.0% |
| !! | CAAGTCACCTCTGAGACAGA+AGG | - | chr5.4:2032195-2032214 | MS.gene000149:intron | 50.0% |
| ACACCCGATCTCGTACTGAG+TGG | - | chr5.4:2029938-2029957 | MS.gene000149:intron | 55.0% | |
| ACCACTGGGTTGCAACATCG+AGG | + | chr5.4:2031569-2031588 | None:intergenic | 55.0% | |
| ATGGGGAAATGTGGTGACCC+TGG | + | chr5.4:2031632-2031651 | None:intergenic | 55.0% | |
| CATTGCGGAAAGAGGATGCG+AGG | + | chr5.4:2032582-2032601 | None:intergenic | 55.0% | |
| CGCTCCTGGCTTAAGAGCTT+TGG | - | chr5.4:2029709-2029728 | MS.gene000149:CDS | 55.0% | |
| GGAATCCCAGGTTCGAACCA+GGG | - | chr5.4:2031612-2031631 | MS.gene000149:CDS | 55.0% | |
| GGGTTACAAGCTAACGAGGC+AGG | - | chr5.4:2032143-2032162 | MS.gene000149:intron | 55.0% | |
| TCCTCGATGTTGCAACCCAG+TGG | - | chr5.4:2031565-2031584 | MS.gene000149:intron | 55.0% | |
| TGGAATCCCAGGTTCGAACC+AGG | - | chr5.4:2031611-2031630 | MS.gene000149:CDS | 55.0% | |
| ! | CCCGCTGATTGCACTTCTCT+TGG | - | chr5.4:2029890-2029909 | MS.gene000149:intron | 55.0% |
| ! | GTTGCAACCCAGTGGTTTGG+TGG | - | chr5.4:2031573-2031592 | MS.gene000149:intron | 55.0% |
| !! | CTGCCGACGAGAGGTGTTTA+GGG | + | chr5.4:2032870-2032889 | None:intergenic | 55.0% |
| !! | GGGAGTACCAGAAACAGCGA+AGG | + | chr5.4:2029873-2029892 | None:intergenic | 55.0% |
| CACACGGGGATGGGGAAATG+TGG | + | chr5.4:2031641-2031660 | None:intergenic | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | - | chr5.4:2030484-2030503 | MS.gene000149:intron | 60.0% | |
| GACGATGGAATCGACGCTCC+TGG | - | chr5.4:2029695-2029714 | MS.gene000149:CDS | 60.0% | |
| GCAGCAAGGGCAAAGTCCTG+TGG | + | chr5.4:2030809-2030828 | None:intergenic | 60.0% | |
| ! | GGTGACCCTGGTTCGAACCT+GGG | + | chr5.4:2031620-2031639 | None:intergenic | 60.0% |
| ! | TGGTGACCCTGGTTCGAACC+TGG | + | chr5.4:2031621-2031640 | None:intergenic | 60.0% |
| !! | GCTGCCGACGAGAGGTGTTT+AGG | + | chr5.4:2032871-2032890 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2029641 | 2032897 | 2029641 | ID=MS.gene000149 |
| chr5.4 | mRNA | 2029641 | 2032897 | 2029641 | ID=MS.gene000149.t1;Parent=MS.gene000149 |
| chr5.4 | exon | 2032567 | 2032897 | 2032567 | ID=MS.gene000149.t1.exon1;Parent=MS.gene000149.t1 |
| chr5.4 | CDS | 2032567 | 2032897 | 2032567 | ID=cds.MS.gene000149.t1;Parent=MS.gene000149.t1 |
| chr5.4 | exon | 2031989 | 2032055 | 2031989 | ID=MS.gene000149.t1.exon2;Parent=MS.gene000149.t1 |
| chr5.4 | CDS | 2031989 | 2032055 | 2031989 | ID=cds.MS.gene000149.t1;Parent=MS.gene000149.t1 |
| chr5.4 | exon | 2031598 | 2031751 | 2031598 | ID=MS.gene000149.t1.exon3;Parent=MS.gene000149.t1 |
| chr5.4 | CDS | 2031598 | 2031751 | 2031598 | ID=cds.MS.gene000149.t1;Parent=MS.gene000149.t1 |
| chr5.4 | exon | 2030227 | 2030394 | 2030227 | ID=MS.gene000149.t1.exon4;Parent=MS.gene000149.t1 |
| chr5.4 | CDS | 2030227 | 2030394 | 2030227 | ID=cds.MS.gene000149.t1;Parent=MS.gene000149.t1 |
| chr5.4 | exon | 2029832 | 2029894 | 2029832 | ID=MS.gene000149.t1.exon5;Parent=MS.gene000149.t1 |
| chr5.4 | CDS | 2029832 | 2029894 | 2029832 | ID=cds.MS.gene000149.t1;Parent=MS.gene000149.t1 |
| chr5.4 | exon | 2029641 | 2029751 | 2029641 | ID=MS.gene000149.t1.exon6;Parent=MS.gene000149.t1 |
| chr5.4 | CDS | 2029641 | 2029751 | 2029641 | ID=cds.MS.gene000149.t1;Parent=MS.gene000149.t1 |
| Gene Sequence |
| Protein sequence |
