Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000150.t1 | PNX93638.1 | 82 | 306 | 54 | 1 | 1 | 306 | 1 | 305 | 1.00E-140 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000150.t1 | A6LS61 | 33.9 | 271 | 137 | 8 | 9 | 276 | 3 | 234 | 8.6e-32 | 139.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000150.t1 | A0A2K3MS27 | 82.0 | 306 | 54 | 1 | 1 | 306 | 1 | 305 | 7.2e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000150 | MS.gene85230 | PPI |
| MS.gene000150 | MS.gene051956 | PPI |
| MS.gene000150 | MS.gene76157 | PPI |
| MS.gene000150 | MS.gene057003 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000150.t1 | MTR_5g006290 | 79.545 | 308 | 60 | 2 | 1 | 306 | 1 | 307 | 0.0 | 509 |
| MS.gene000150.t1 | MTR_5g006300 | 91.339 | 254 | 10 | 2 | 2 | 249 | 3 | 250 | 2.55e-169 | 471 |
| MS.gene000150.t1 | MTR_1g104500 | 71.197 | 309 | 83 | 4 | 1 | 306 | 1 | 306 | 2.84e-162 | 454 |
| MS.gene000150.t1 | MTR_5g006290 | 81.673 | 251 | 44 | 1 | 1 | 249 | 1 | 251 | 4.36e-155 | 434 |
| MS.gene000150.t1 | MTR_2g099720 | 35.758 | 330 | 176 | 7 | 1 | 297 | 46 | 372 | 7.94e-61 | 198 |
| MS.gene000150.t1 | MTR_1g104513 | 47.500 | 80 | 40 | 1 | 204 | 283 | 1 | 78 | 3.95e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000150.t1 | AT4G14930 | 58.667 | 300 | 113 | 5 | 4 | 297 | 11 | 305 | 1.49e-125 | 361 |
| MS.gene000150.t1 | AT4G14930 | 57.348 | 279 | 108 | 5 | 4 | 276 | 11 | 284 | 7.53e-113 | 329 |
| MS.gene000150.t1 | AT1G72880 | 36.076 | 316 | 171 | 5 | 9 | 294 | 63 | 377 | 1.71e-60 | 197 |
| MS.gene000150.t1 | AT1G72880 | 36.076 | 316 | 171 | 5 | 9 | 294 | 63 | 377 | 1.71e-60 | 197 |
Find 73 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCCTTTGCGGTTTC+TGG | 0.080018 | 5.4:-2036390 | MS.gene000150:intron |
| GGTAGTCAGTGGCATAAATA+AGG | 0.269395 | 5.4:-2036222 | MS.gene000150:CDS |
| GTCATATCCGATGACATTAT+TGG | 0.278609 | 5.4:+2035191 | None:intergenic |
| GCTTCCGACGAGAGGGGTTT+GGG | 0.282212 | 5.4:+2034555 | None:intergenic |
| ATTTGTATGTCCAGGGTTAA+AGG | 0.329046 | 5.4:-2035532 | MS.gene000150:intron |
| TTAACTTGTTTGACAGCAAC+AGG | 0.330194 | 5.4:+2036426 | None:intergenic |
| ATTCTTTATATCAACCAGTA+TGG | 0.333966 | 5.4:+2035450 | None:intergenic |
| AGCTTCCGACGAGAGGGGTT+TGG | 0.341404 | 5.4:+2034554 | None:intergenic |
| TGCTCCTGGTTTGAGAGCTT+TGG | 0.342858 | 5.4:-2036832 | MS.gene000150:CDS |
| ATTACTGTTACTCCTCTTGC+TGG | 0.350649 | 5.4:-2034636 | MS.gene000150:CDS |
| ACCTGGTTTACTTACCTATC+AGG | 0.357327 | 5.4:+2036762 | None:intergenic |
| GTCAAACAAGTTAACATTCA+TGG | 0.358879 | 5.4:-2036417 | MS.gene000150:CDS |
| TTGTAGCCATTCCTCAAAAT+AGG | 0.371094 | 5.4:+2034584 | None:intergenic |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | 5.4:+2035119 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+TGG | 0.377853 | 5.4:-2035245 | MS.gene000150:CDS |
| ACCAGTATGGTGCTTATGAT+TGG | 0.395152 | 5.4:+2035463 | None:intergenic |
| GAGAGCTTTGGTTGAATCCC+TGG | 0.400114 | 5.4:-2036820 | MS.gene000150:CDS |
| AATATACCAGTCATATGAAA+TGG | 0.404590 | 5.4:+2035772 | None:intergenic |
| TCTTAGTCTGTGCTCCTGAT+AGG | 0.419734 | 5.4:-2036776 | MS.gene000150:intron |
| TCCAATCATAAGCACCATAC+TGG | 0.425888 | 5.4:-2035464 | MS.gene000150:CDS |
| TGGAACCGTTGCTTCCTTTG+CGG | 0.426141 | 5.4:-2036397 | MS.gene000150:CDS |
| TTATGGTTAGCAACATCGTT+TGG | 0.448421 | 5.4:+2035388 | None:intergenic |
| CAATCTCCATTTCATATGAC+TGG | 0.460076 | 5.4:-2035778 | MS.gene000150:intron |
| ATTTCCTACAACACCTGATC+TGG | 0.463342 | 5.4:-2036243 | MS.gene000150:CDS |
| ACTACCAGATCAGGTGTTGT+AGG | 0.466354 | 5.4:+2036239 | None:intergenic |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 5.4:-2035833 | MS.gene000150:CDS |
| AAAGTATCTTTAAGATTGGA+TGG | 0.485897 | 5.4:-2035241 | MS.gene000150:CDS |
| GGGTTACAAGCTAACAAGGC+AGG | 0.490829 | 5.4:-2035267 | MS.gene000150:CDS |
| AGGTGTATCAGTATCAGTAT+TGG | 0.502952 | 5.4:+2035169 | None:intergenic |
| GTAGTCAGTGGCATAAATAA+GGG | 0.514796 | 5.4:-2036221 | MS.gene000150:CDS |
| CCGGCTGATTGCACTTCTCT+CGG | 0.516037 | 5.4:-2036281 | MS.gene000150:CDS |
| TACGGATTACACATTCTTGA+AGG | 0.516264 | 5.4:-2034748 | MS.gene000150:CDS |
| CCGTTAGCCATTGTGTGACA+TGG | 0.521413 | 5.4:-2036455 | MS.gene000150:CDS |
| AAACGATGTTGCTAACCATA+AGG | 0.528344 | 5.4:-2035386 | MS.gene000150:intron |
| GAGATGGATGAGGGTAAGCT+AGG | 0.530939 | 5.4:-2036888 | MS.gene000150:CDS |
| TCATATGAAATGGAGATTGA+AGG | 0.532405 | 5.4:+2035782 | None:intergenic |
| TTTCTTCTTTGCAGGTACTC+CGG | 0.534209 | 5.4:-2036300 | MS.gene000150:intron |
| TGAAGGGATATCATTAAAGA+AGG | 0.534821 | 5.4:+2035799 | None:intergenic |
| CATATGAAATGGAGATTGAA+GGG | 0.535556 | 5.4:+2035783 | None:intergenic |
| GATTACACATTCTTGAAGGC+GGG | 0.535645 | 5.4:-2034744 | MS.gene000150:CDS |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | 5.4:-2035822 | MS.gene000150:CDS |
| ATTCTGATAACAAACGATGA+TGG | 0.543399 | 5.4:-2036861 | MS.gene000150:CDS |
| TTCCCTTTCAGTGTTTACTC+AGG | 0.543522 | 5.4:-2035845 | MS.gene000150:intron |
| ATGCCACTGACTACCAGATC+AGG | 0.544823 | 5.4:+2036230 | None:intergenic |
| CTTCCGACGAGAGGGGTTTG+GGG | 0.545820 | 5.4:+2034556 | None:intergenic |
| TGTTGTAGGAAATAGTGCTC+TGG | 0.558048 | 5.4:+2036253 | None:intergenic |
| GCACGAGAGAGACCAGCAAG+AGG | 0.562815 | 5.4:+2034624 | None:intergenic |
| CCGAGAGAAGTGCAATCAGC+CGG | 0.562865 | 5.4:+2036281 | None:intergenic |
| TGTACTTGATCATGACGATA+CGG | 0.570922 | 5.4:-2034766 | MS.gene000150:CDS |
| TCAACCAAAGCTCTCAAACC+AGG | 0.570986 | 5.4:+2036828 | None:intergenic |
| CTATAAAGCTTCCGACGAGA+GGG | 0.577851 | 5.4:+2034548 | None:intergenic |
| TAAAGAATCAAAGCTACCCT+GGG | 0.585985 | 5.4:-2035435 | MS.gene000150:CDS |
| GATGATGGTATCGATGCTCC+TGG | 0.590611 | 5.4:-2036846 | MS.gene000150:CDS |
| AGAAGGACCAATAATGTCAT+CGG | 0.592757 | 5.4:-2035198 | MS.gene000150:CDS |
| ACTATAAAGCTTCCGACGAG+AGG | 0.593114 | 5.4:+2034547 | None:intergenic |
| ATAAAGAATCAAAGCTACCC+TGG | 0.599661 | 5.4:-2035436 | MS.gene000150:CDS |
| CCATGTCACACAATGGCTAA+CGG | 0.601876 | 5.4:+2036455 | None:intergenic |
| ATAAATAAGGGTAGCAACTG+CGG | 0.609893 | 5.4:-2036209 | MS.gene000150:CDS |
| AAAAGGGTTACAAGCTAACA+AGG | 0.613958 | 5.4:-2035271 | MS.gene000150:intron |
| CAAGTCACCTCTCAGACAGA+AGG | 0.626825 | 5.4:-2035215 | MS.gene000150:CDS |
| GGATTACACATTCTTGAAGG+CGG | 0.632840 | 5.4:-2034745 | MS.gene000150:CDS |
| GGTTACAAGCTAACAAGGCA+GGG | 0.632843 | 5.4:-2035266 | MS.gene000150:CDS |
| TCTTGCTGGTCTCTCTCGTG+CGG | 0.637394 | 5.4:-2034622 | MS.gene000150:CDS |
| TATTGGTCCTTCTGTCTGAG+AGG | 0.645859 | 5.4:+2035208 | None:intergenic |
| AGAAACCGCAAAGGAAGCAA+CGG | 0.646643 | 5.4:+2036392 | None:intergenic |
| TATAAAGCTTCCGACGAGAG+GGG | 0.648568 | 5.4:+2034549 | None:intergenic |
| TGTCCCCAAACCCCTCTCGT+CGG | 0.652779 | 5.4:-2034559 | MS.gene000150:CDS |
| GCAGCAAGAGCAAAGTCGTG+TGG | 0.670936 | 5.4:+2035499 | None:intergenic |
| ACACCTGATCTGGTAGTCAG+TGG | 0.675568 | 5.4:-2036233 | MS.gene000150:CDS |
| GGTGAAGCCATGTCACACAA+TGG | 0.678364 | 5.4:+2036448 | None:intergenic |
| TAACTTGTTTGACAGCAACA+GGG | 0.679661 | 5.4:+2036427 | None:intergenic |
| CAACTAACCAGAAACCGCAA+AGG | 0.682214 | 5.4:+2036383 | None:intergenic |
| GTATCTTTAAGATTGGATGG+AGG | 0.682656 | 5.4:-2035238 | MS.gene000150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAACTAATTTAT+TGG | - | chr5.4:2036121-2036140 | MS.gene000150:intron | 10.0% |
| !!! | GTATTTTAAACTAATATAAA+GGG | + | chr5.4:2034869-2034888 | None:intergenic | 10.0% |
| !!! | TAAGATTTTAAGTAAAAAAA+AGG | + | chr5.4:2036363-2036382 | None:intergenic | 10.0% |
| !!! | TGTATTTTAAACTAATATAA+AGG | + | chr5.4:2034870-2034889 | None:intergenic | 10.0% |
| !! | ACAATTATAAGCTAAAAAAT+TGG | + | chr5.4:2035754-2035773 | None:intergenic | 15.0% |
| !! | TATTACATCATTATTCATTA+GGG | + | chr5.4:2036612-2036631 | None:intergenic | 15.0% |
| !! | TTAAGTAAAAAAAAGGAAAA+AGG | + | chr5.4:2036356-2036375 | None:intergenic | 15.0% |
| !! | TTATTACATCATTATTCATT+AGG | + | chr5.4:2036613-2036632 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTTAAAGTTATTT+CGG | - | chr5.4:2035515-2035534 | MS.gene000150:CDS | 15.0% |
| !! | AATATTCAGTAAATCATAAG+AGG | + | chr5.4:2035495-2035514 | None:intergenic | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | + | chr5.4:2036065-2036084 | None:intergenic | 20.0% |
| !! | ATATTCAGTAAATCATAAGA+GGG | + | chr5.4:2035494-2035513 | None:intergenic | 20.0% |
| !! | ATTCTTTAATCTCAATCAAA+CGG | + | chr5.4:2034737-2034756 | None:intergenic | 20.0% |
| !! | CTATGTAGAACTATAAAAAA+GGG | + | chr5.4:2036436-2036455 | None:intergenic | 20.0% |
| !! | CTTATAATTGTAACTGATAA+CGG | - | chr5.4:2035763-2035782 | MS.gene000150:intron | 20.0% |
| !! | TACTATTATTGACCATTTAA+AGG | - | chr5.4:2035876-2035895 | MS.gene000150:intron | 20.0% |
| !! | TTTATTATATGACATGTAGA+CGG | - | chr5.4:2034899-2034918 | MS.gene000150:intron | 20.0% |
| !!! | AATAATCTCTTAACTTTTGT+AGG | - | chr5.4:2036628-2036647 | MS.gene000150:intron | 20.0% |
| ! | AATATACCAGTCATATGAAA+TGG | + | chr5.4:2035664-2035683 | None:intergenic | 25.0% |
| ! | ACATACAAATAGCCTTTAAA+TGG | + | chr5.4:2035891-2035910 | None:intergenic | 25.0% |
| ! | ACTGATACACCTAAAAATTA+TGG | - | chr5.4:2036275-2036294 | MS.gene000150:CDS | 25.0% |
| ! | ATATTCAAAAAACATTTCCC+AGG | + | chr5.4:2036018-2036037 | None:intergenic | 25.0% |
| ! | ATTCTTTATATCAACCAGTA+TGG | + | chr5.4:2035986-2036005 | None:intergenic | 25.0% |
| ! | CATTTCAAATTTCAAGGAAA+TGG | + | chr5.4:2035470-2035489 | None:intergenic | 25.0% |
| ! | GACTAAGACATTAAAAAGAT+TGG | + | chr5.4:2034645-2034664 | None:intergenic | 25.0% |
| ! | GCTATGTAGAACTATAAAAA+AGG | + | chr5.4:2036437-2036456 | None:intergenic | 25.0% |
| ! | TAAGAAGCTATTGTTATAGA+AGG | + | chr5.4:2035855-2035874 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATTTCCCA+GGG | + | chr5.4:2036017-2036036 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTCATAGCAAA+TGG | - | chr5.4:2035344-2035363 | MS.gene000150:intron | 25.0% |
| !! | TCAACAGAAAAATTTTCAAC+AGG | + | chr5.4:2035395-2035414 | None:intergenic | 25.0% |
| !! | TCTTAACTTTTGTAGGTAAA+AGG | - | chr5.4:2036635-2036654 | MS.gene000150:intron | 25.0% |
| !!! | AAAGTATCTTTAAGATTGGA+TGG | - | chr5.4:2036192-2036211 | MS.gene000150:intron | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+TGG | - | chr5.4:2036188-2036207 | MS.gene000150:intron | 25.0% |
| AATGAATGTCTCGAGAATTA+TGG | - | chr5.4:2035786-2035805 | MS.gene000150:CDS | 30.0% | |
| ATTCTGATAACAAACGATGA+TGG | - | chr5.4:2034572-2034591 | MS.gene000150:CDS | 30.0% | |
| CACTGCTTAAAGTCTAAAAA+AGG | + | chr5.4:2035292-2035311 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATTGAA+GGG | + | chr5.4:2035653-2035672 | None:intergenic | 30.0% | |
| CTAAACAATCCTAAACTACT+TGG | - | chr5.4:2036552-2036571 | MS.gene000150:intron | 30.0% | |
| CTATATGAATTTGATCACCA+CGG | + | chr5.4:2034698-2034717 | None:intergenic | 30.0% | |
| GAATATGTTGTAATAGACTG+AGG | - | chr5.4:2036471-2036490 | MS.gene000150:intron | 30.0% | |
| GATGTGAATTCTTTCATGTT+TGG | - | chr5.4:2034797-2034816 | MS.gene000150:intron | 30.0% | |
| GTCAAACAAGTTAACATTCA+TGG | - | chr5.4:2035016-2035035 | MS.gene000150:intron | 30.0% | |
| TCATATGAAATGGAGATTGA+AGG | + | chr5.4:2035654-2035673 | None:intergenic | 30.0% | |
| TCATTATTCATTAGGGAAAG+AGG | + | chr5.4:2036605-2036624 | None:intergenic | 30.0% | |
| TCTATATGATCTTGATCCAA+CGG | - | chr5.4:2034769-2034788 | MS.gene000150:CDS | 30.0% | |
| TGAAGGGATATCATTAAAGA+AGG | + | chr5.4:2035637-2035656 | None:intergenic | 30.0% | |
| TGAGCTTATGAAAATGGAAA+TGG | + | chr5.4:2035091-2035110 | None:intergenic | 30.0% | |
| TGCTTAAAGTCTAAAAAAGG+CGG | + | chr5.4:2035289-2035308 | None:intergenic | 30.0% | |
| TGTAGAACTATAAAAAAGGG+TGG | + | chr5.4:2036433-2036452 | None:intergenic | 30.0% | |
| ! | ATATTTTCAACATGCTTCTG+TGG | - | chr5.4:2035679-2035698 | MS.gene000150:intron | 30.0% |
| !!! | CTTGCAACAATTTTTGAAAC+AGG | + | chr5.4:2034836-2034855 | None:intergenic | 30.0% |
| AAAAGGGTTACAAGCTAACA+AGG | - | chr5.4:2036162-2036181 | MS.gene000150:intron | 35.0% | |
| AAACGATGTTGCTAACCATA+AGG | - | chr5.4:2036047-2036066 | MS.gene000150:intron | 35.0% | |
| AAAGGCTATTTGTATGTCCA+GGG | - | chr5.4:2035894-2035913 | MS.gene000150:intron | 35.0% | |
| AATGTCCATCCAAGTAGTTT+AGG | + | chr5.4:2036564-2036583 | None:intergenic | 35.0% | |
| ACAATCCTAAACTACTTGGA+TGG | - | chr5.4:2036556-2036575 | MS.gene000150:intron | 35.0% | |
| AGAAGGACCAATAATGTCAT+CGG | - | chr5.4:2036235-2036254 | MS.gene000150:CDS | 35.0% | |
| AGGTGTATCAGTATCAGTAT+TGG | + | chr5.4:2036267-2036286 | None:intergenic | 35.0% | |
| ATAAAGAATCAAAGCTACCC+TGG | - | chr5.4:2035997-2036016 | MS.gene000150:intron | 35.0% | |
| ATAAATAAGGGTAGCAACTG+CGG | - | chr5.4:2035224-2035243 | MS.gene000150:CDS | 35.0% | |
| ATTACTCTTTCCTTTAACCC+TGG | + | chr5.4:2035914-2035933 | None:intergenic | 35.0% | |
| ATTTGTATGTCCAGGGTTAA+AGG | - | chr5.4:2035901-2035920 | MS.gene000150:intron | 35.0% | |
| CAATCTCCATTTCATATGAC+TGG | - | chr5.4:2035655-2035674 | MS.gene000150:intron | 35.0% | |
| CTCGCAAATAAAAGATGTTC+AGG | + | chr5.4:2036317-2036336 | None:intergenic | 35.0% | |
| CTTAAAGTCTAAAAAAGGCG+GGG | + | chr5.4:2035287-2035306 | None:intergenic | 35.0% | |
| GAGGGTCATTTCAAATTTCA+AGG | + | chr5.4:2035476-2035495 | None:intergenic | 35.0% | |
| GCTTAAAGTCTAAAAAAGGC+GGG | + | chr5.4:2035288-2035307 | None:intergenic | 35.0% | |
| GTAGTCAGTGGCATAAATAA+GGG | - | chr5.4:2035212-2035231 | MS.gene000150:CDS | 35.0% | |
| GTCATATCCGATGACATTAT+TGG | + | chr5.4:2036245-2036264 | None:intergenic | 35.0% | |
| TAAAGAATCAAAGCTACCCT+GGG | - | chr5.4:2035998-2036017 | MS.gene000150:intron | 35.0% | |
| TAAAGGCTATTTGTATGTCC+AGG | - | chr5.4:2035893-2035912 | MS.gene000150:intron | 35.0% | |
| TAGACAGAACAGAACAACTA+TGG | + | chr5.4:2035567-2035586 | None:intergenic | 35.0% | |
| TGAGCTTGAGCTTATGAAAA+TGG | + | chr5.4:2035097-2035116 | None:intergenic | 35.0% | |
| TGTACTTGATCATGACGATA+CGG | - | chr5.4:2036667-2036686 | MS.gene000150:intron | 35.0% | |
| TTATGGTTAGCAACATCGTT+TGG | + | chr5.4:2036048-2036067 | None:intergenic | 35.0% | |
| TTATTCATTAGGGAAAGAGG+AGG | + | chr5.4:2036602-2036621 | None:intergenic | 35.0% | |
| TTGTAGCCATTCCTCAAAAT+AGG | + | chr5.4:2036852-2036871 | None:intergenic | 35.0% | |
| ! | AGATTGTCAGACCTATTTTG+AGG | - | chr5.4:2036838-2036857 | MS.gene000150:CDS | 35.0% |
| ! | GATGACGTGCCATAATTTTT+AGG | + | chr5.4:2036287-2036306 | None:intergenic | 35.0% |
| ! | TACGGATTACACATTCTTGA+AGG | - | chr5.4:2036685-2036704 | MS.gene000150:intron | 35.0% |
| !! | AAAAAGATTGGTGTTGACCA+GGG | + | chr5.4:2034633-2034652 | None:intergenic | 35.0% |
| !! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5.4:2036319-2036338 | MS.gene000150:intron | 35.0% |
| !! | CGACTATTTTTCTTCTTTGC+AGG | - | chr5.4:2035125-2035144 | MS.gene000150:CDS | 35.0% |
| !! | GTATCTTTAAGATTGGATGG+AGG | - | chr5.4:2036195-2036214 | MS.gene000150:intron | 35.0% |
| !! | TAAAAAGATTGGTGTTGACC+AGG | + | chr5.4:2034634-2034653 | None:intergenic | 35.0% |
| !! | TAACTTGTTTGACAGCAACA+GGG | + | chr5.4:2035009-2035028 | None:intergenic | 35.0% |
| !! | TTAACTTGTTTGACAGCAAC+AGG | + | chr5.4:2035010-2035029 | None:intergenic | 35.0% |
| ACCAGTATGGTGCTTATGAT+TGG | + | chr5.4:2035973-2035992 | None:intergenic | 40.0% | |
| ACCTGGTTTACTTACCTATC+AGG | + | chr5.4:2034674-2034693 | None:intergenic | 40.0% | |
| ATTACTGTTACTCCTCTTGC+TGG | - | chr5.4:2036797-2036816 | MS.gene000150:CDS | 40.0% | |
| ATTTCCTACAACACCTGATC+TGG | - | chr5.4:2035190-2035209 | MS.gene000150:CDS | 40.0% | |
| GAATTCACATCAATGACCGT+TGG | + | chr5.4:2034788-2034807 | None:intergenic | 40.0% | |
| GATTACACATTCTTGAAGGC+GGG | - | chr5.4:2036689-2036708 | MS.gene000150:intron | 40.0% | |
| GGATTACACATTCTTGAAGG+CGG | - | chr5.4:2036688-2036707 | MS.gene000150:intron | 40.0% | |
| GGTAGTCAGTGGCATAAATA+AGG | - | chr5.4:2035211-2035230 | MS.gene000150:CDS | 40.0% | |
| TCCAATCATAAGCACCATAC+TGG | - | chr5.4:2035969-2035988 | MS.gene000150:intron | 40.0% | |
| TCCTGATAGGTAAGTAAACC+AGG | - | chr5.4:2034670-2034689 | MS.gene000150:intron | 40.0% | |
| TCGTCATCTGTTCATAGCTT+AGG | + | chr5.4:2035442-2035461 | None:intergenic | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | + | chr5.4:2035593-2035612 | None:intergenic | 40.0% | |
| TGTTGTAGGAAATAGTGCTC+TGG | + | chr5.4:2035183-2035202 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | - | chr5.4:2035588-2035607 | MS.gene000150:intron | 40.0% | |
| TTTCTTCTTTGCAGGTACTC+CGG | - | chr5.4:2035133-2035152 | MS.gene000150:CDS | 40.0% | |
| ! | GTTTAGTCTTCCAGAGAACT+TGG | + | chr5.4:2036538-2036557 | None:intergenic | 40.0% |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5.4:2036323-2036342 | MS.gene000150:intron | 40.0% |
| !! | GTCAGACCTATTTTGAGGAA+TGG | - | chr5.4:2036843-2036862 | MS.gene000150:CDS | 40.0% |
| AAAGGGTGGAGTTCATCTGA+AGG | + | chr5.4:2036419-2036438 | None:intergenic | 45.0% | |
| AATTTGATCACCACGGAACC+TGG | + | chr5.4:2034691-2034710 | None:intergenic | 45.0% | |
| AGAAACCGCAAAGGAAGCAA+CGG | + | chr5.4:2035044-2035063 | None:intergenic | 45.0% | |
| CAACTAACCAGAAACCGCAA+AGG | + | chr5.4:2035053-2035072 | None:intergenic | 45.0% | |
| CCATGTCACACAATGGCTAA+CGG | + | chr5.4:2034981-2035000 | None:intergenic | 45.0% | |
| CTATAAAGCTTCCGACGAGA+GGG | + | chr5.4:2036888-2036907 | None:intergenic | 45.0% | |
| GGTTACAAGCTAACAAGGCA+GGG | - | chr5.4:2036167-2036186 | MS.gene000150:intron | 45.0% | |
| GTCGTCTGTGCATGGAAAAA+GGG | - | chr5.4:2036146-2036165 | MS.gene000150:intron | 45.0% | |
| GTGCCTGAGTAAACACTGAA+AGG | + | chr5.4:2035594-2035613 | None:intergenic | 45.0% | |
| TATAAAGCTTCCGACGAGAG+GGG | + | chr5.4:2036887-2036906 | None:intergenic | 45.0% | |
| TATTGGTCCTTCTGTCTGAG+AGG | + | chr5.4:2036228-2036247 | None:intergenic | 45.0% | |
| TCAACCAAAGCTCTCAAACC+AGG | + | chr5.4:2034608-2034627 | None:intergenic | 45.0% | |
| TCTTAGTCTGTGCTCCTGAT+AGG | - | chr5.4:2034657-2034676 | MS.gene000150:intron | 45.0% | |
| TGTCGTCTGTGCATGGAAAA+AGG | - | chr5.4:2036145-2036164 | MS.gene000150:intron | 45.0% | |
| ! | ACTACCAGATCAGGTGTTGT+AGG | + | chr5.4:2035197-2035216 | None:intergenic | 45.0% |
| ! | TATTGGTTGTCGTCTGTGCA+TGG | - | chr5.4:2036138-2036157 | MS.gene000150:intron | 45.0% |
| !! | CTTTGCGGTTTCTGGTTAGT+TGG | - | chr5.4:2035051-2035070 | MS.gene000150:intron | 45.0% |
| !! | GAAGTTGATGCCAAGTTCTC+TGG | - | chr5.4:2036525-2036544 | MS.gene000150:intron | 45.0% |
| ACACCTGATCTGGTAGTCAG+TGG | - | chr5.4:2035200-2035219 | MS.gene000150:CDS | 50.0% | |
| CAAGTCACCTCTCAGACAGA+AGG | - | chr5.4:2036218-2036237 | MS.gene000150:CDS | 50.0% | |
| CCGTTAGCCATTGTGTGACA+TGG | - | chr5.4:2034978-2034997 | MS.gene000150:intron | 50.0% | |
| CTAAAAAAGGCGGGGACATG+AGG | + | chr5.4:2035279-2035298 | None:intergenic | 50.0% | |
| GGGTTACAAGCTAACAAGGC+AGG | - | chr5.4:2036166-2036185 | MS.gene000150:intron | 50.0% | |
| GGTAAGTAAACCAGGTTCCG+TGG | - | chr5.4:2034678-2034697 | MS.gene000150:intron | 50.0% | |
| GGTGAAGCCATGTCACACAA+TGG | + | chr5.4:2034988-2035007 | None:intergenic | 50.0% | |
| GTTGCTTCCTTTGCGGTTTC+TGG | - | chr5.4:2035043-2035062 | MS.gene000150:intron | 50.0% | |
| TGGAACCGTTGCTTCCTTTG+CGG | - | chr5.4:2035036-2035055 | MS.gene000150:intron | 50.0% | |
| ! | ATGCCACTGACTACCAGATC+AGG | + | chr5.4:2035206-2035225 | None:intergenic | 50.0% |
| ! | GAGAGCTTTGGTTGAATCCC+TGG | - | chr5.4:2034613-2034632 | MS.gene000150:CDS | 50.0% |
| ! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5.4:2035600-2035619 | MS.gene000150:intron | 50.0% |
| ! | TGCTCCTGGTTTGAGAGCTT+TGG | - | chr5.4:2034601-2034620 | MS.gene000150:CDS | 50.0% |
| !! | GATGATGGTATCGATGCTCC+TGG | - | chr5.4:2034587-2034606 | MS.gene000150:CDS | 50.0% |
| AAAAAGGCGGGGACATGAGG+AGG | + | chr5.4:2035276-2035295 | None:intergenic | 55.0% | |
| AAGAGGAGGCGAGGAGGATT+AGG | + | chr5.4:2036588-2036607 | None:intergenic | 55.0% | |
| CATTAGGGAAAGAGGAGGCG+AGG | + | chr5.4:2036597-2036616 | None:intergenic | 55.0% | |
| CCGGCTGATTGCACTTCTCT+CGG | - | chr5.4:2035152-2035171 | MS.gene000150:CDS | 55.0% | |
| GCAGCAAGAGCAAAGTCGTG+TGG | + | chr5.4:2035937-2035956 | None:intergenic | 55.0% | |
| ! | CCGAGAGAAGTGCAATCAGC+CGG | + | chr5.4:2035155-2035174 | None:intergenic | 55.0% |
| ! | TCTTGCTGGTCTCTCTCGTG+CGG | - | chr5.4:2036811-2036830 | MS.gene000150:CDS | 55.0% |
| AGCTTCCGACGAGAGGGGTT+TGG | + | chr5.4:2036882-2036901 | None:intergenic | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | - | chr5.4:2035611-2035630 | MS.gene000150:intron | 60.0% | |
| CTTCCGACGAGAGGGGTTTG+GGG | + | chr5.4:2036880-2036899 | None:intergenic | 60.0% | |
| GCACGAGAGAGACCAGCAAG+AGG | + | chr5.4:2036812-2036831 | None:intergenic | 60.0% | |
| GCTTCCGACGAGAGGGGTTT+GGG | + | chr5.4:2036881-2036900 | None:intergenic | 60.0% | |
| TAGGGAAAGAGGAGGCGAGG+AGG | + | chr5.4:2036594-2036613 | None:intergenic | 60.0% | |
| TGTCCCCAAACCCCTCTCGT+CGG | - | chr5.4:2036874-2036893 | MS.gene000150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2034548 | 2036907 | 2034548 | ID=MS.gene000150 |
| chr5.4 | mRNA | 2034548 | 2036907 | 2034548 | ID=MS.gene000150.t1;Parent=MS.gene000150 |
| chr5.4 | exon | 2036777 | 2036907 | 2036777 | ID=MS.gene000150.t1.exon1;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2036777 | 2036907 | 2036777 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2036391 | 2036488 | 2036391 | ID=MS.gene000150.t1.exon2;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2036391 | 2036488 | 2036391 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2036200 | 2036308 | 2036200 | ID=MS.gene000150.t1.exon3;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2036200 | 2036308 | 2036200 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2035779 | 2035856 | 2035779 | ID=MS.gene000150.t1.exon4;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2035779 | 2035856 | 2035779 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2035387 | 2035540 | 2035387 | ID=MS.gene000150.t1.exon5;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2035387 | 2035540 | 2035387 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2035115 | 2035288 | 2035115 | ID=MS.gene000150.t1.exon6;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2035115 | 2035288 | 2035115 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2034740 | 2034805 | 2034740 | ID=MS.gene000150.t1.exon7;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2034740 | 2034805 | 2034740 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| chr5.4 | exon | 2034548 | 2034658 | 2034548 | ID=MS.gene000150.t1.exon8;Parent=MS.gene000150.t1 |
| chr5.4 | CDS | 2034548 | 2034658 | 2034548 | ID=cds.MS.gene000150.t1;Parent=MS.gene000150.t1 |
| Gene Sequence |
| Protein sequence |
