Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000366.t1 | PNX54585.1 | 63 | 357 | 98 | 3 | 1 | 324 | 1 | 356 | 1.40E-100 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000366.t1 | Q9FHE1 | 29.5 | 193 | 108 | 3 | 90 | 254 | 266 | 458 | 3.5e-15 | 84.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000366.t1 | A0A2K3JKM3 | 63.0 | 357 | 98 | 3 | 1 | 324 | 1 | 356 | 1.0e-100 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066439 | MS.gene000366 | PPI |
| MS.gene000366 | MS.gene029093 | PPI |
| MS.gene90825 | MS.gene000366 | PPI |
| MS.gene97346 | MS.gene000366 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000366.t1 | MTR_7g088160 | 35.238 | 315 | 145 | 7 | 65 | 322 | 74 | 386 | 2.31e-52 | 177 |
| MS.gene000366.t1 | MTR_7g107340 | 37.415 | 294 | 126 | 6 | 57 | 322 | 69 | 332 | 7.43e-49 | 166 |
| MS.gene000366.t1 | MTR_4g063670 | 38.235 | 306 | 136 | 9 | 64 | 322 | 18 | 317 | 2.26e-46 | 159 |
| MS.gene000366.t1 | MTR_0867s0010 | 37.963 | 324 | 142 | 10 | 50 | 322 | 2 | 317 | 8.66e-43 | 150 |
| MS.gene000366.t1 | MTR_7g114170 | 35.503 | 338 | 138 | 9 | 8 | 322 | 7 | 287 | 8.27e-38 | 136 |
| MS.gene000366.t1 | MTR_4g083510 | 34.884 | 301 | 140 | 9 | 71 | 322 | 25 | 318 | 5.67e-35 | 130 |
| MS.gene000366.t1 | MTR_6g081150 | 37.037 | 216 | 85 | 7 | 59 | 274 | 12 | 176 | 1.15e-29 | 112 |
| MS.gene000366.t1 | MTR_3g069460 | 39.474 | 152 | 69 | 3 | 67 | 195 | 21 | 172 | 1.36e-26 | 103 |
| MS.gene000366.t1 | MTR_1g051185 | 42.446 | 139 | 56 | 3 | 115 | 231 | 45 | 181 | 6.36e-26 | 104 |
| MS.gene000366.t1 | MTR_4g046740 | 35.652 | 115 | 63 | 3 | 215 | 322 | 24 | 134 | 7.68e-14 | 68.2 |
| MS.gene000366.t1 | MTR_8g015740 | 54.386 | 57 | 25 | 1 | 72 | 127 | 74 | 130 | 3.18e-13 | 66.2 |
| MS.gene000366.t1 | MTR_1g075060 | 26.627 | 169 | 105 | 4 | 65 | 214 | 103 | 271 | 5.21e-13 | 69.3 |
| MS.gene000366.t1 | MTR_2g023560 | 56.863 | 51 | 22 | 0 | 91 | 141 | 57 | 107 | 1.18e-12 | 64.3 |
| MS.gene000366.t1 | MTR_6g453050 | 26.230 | 183 | 102 | 5 | 65 | 214 | 52 | 234 | 8.16e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000366.t1 | AT5G41220 | 34.848 | 198 | 97 | 6 | 90 | 257 | 208 | 403 | 1.71e-22 | 98.2 |
| MS.gene000366.t1 | AT5G41220 | 34.673 | 199 | 98 | 6 | 90 | 258 | 266 | 462 | 1.78e-22 | 98.6 |
| MS.gene000366.t1 | AT5G41220 | 34.848 | 198 | 97 | 6 | 90 | 257 | 216 | 411 | 1.97e-22 | 98.2 |
| MS.gene000366.t1 | AT5G41240 | 33.333 | 198 | 99 | 7 | 90 | 256 | 266 | 461 | 3.34e-19 | 88.6 |
| MS.gene000366.t1 | AT3G47680 | 34.109 | 129 | 58 | 4 | 91 | 195 | 44 | 169 | 8.38e-16 | 77.0 |
| MS.gene000366.t1 | AT1G66235 | 29.365 | 126 | 66 | 3 | 97 | 199 | 7 | 132 | 3.51e-12 | 66.2 |
Find 68 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTTCTCCCTTCCATTT+AGG | 0.213354 | 1.1:+31135377 | None:intergenic |
| AACTCCCACGACTGGATCTT+TGG | 0.280062 | 1.1:+31135676 | None:intergenic |
| CGGAAGAAGGAGAGCGTTCT+AGG | 0.298681 | 1.1:-31135769 | MS.gene000366:CDS |
| GAATCGTCACCGGTAGTTAA+TGG | 0.302053 | 1.1:+31135917 | None:intergenic |
| TGTTGAAGGATGAACCTAAA+TGG | 0.353625 | 1.1:-31135391 | MS.gene000366:CDS |
| GATGCTAGACAAATCCACTA+TGG | 0.395658 | 1.1:+31135178 | None:intergenic |
| TCCACTATGGGTGTTGTAGA+TGG | 0.411167 | 1.1:+31135191 | None:intergenic |
| TCAACCACCTAGTGTAGAAC+TGG | 0.413382 | 1.1:-31135870 | MS.gene000366:CDS |
| TGGGGCAAAAGGCGGCAAAA+AGG | 0.416947 | 1.1:-31135235 | MS.gene000366:CDS |
| GTTGTATTCTGAACAATCAA+TGG | 0.420235 | 1.1:+31135283 | None:intergenic |
| AATGTTACTTTCACGGAAGA+AGG | 0.428162 | 1.1:-31135782 | MS.gene000366:CDS |
| GAAGTACTTCAAGAGAAGTT+AGG | 0.431754 | 1.1:-31134994 | None:intergenic |
| TATTGAGAACCGCCACTGTT+AGG | 0.440331 | 1.1:+31135992 | None:intergenic |
| TTGTATTCTGAACAATCAAT+GGG | 0.457951 | 1.1:+31135284 | None:intergenic |
| TGACCGTCCAATGGGGCAAA+AGG | 0.459264 | 1.1:-31135246 | MS.gene000366:CDS |
| CGGTAGTTAATGGCGGTGAT+TGG | 0.464166 | 1.1:+31135927 | None:intergenic |
| GGCGGTGATTGGAACATATA+CGG | 0.467814 | 1.1:+31135938 | None:intergenic |
| TCTCAAACTGACCGTCCAAT+GGG | 0.471250 | 1.1:-31135254 | MS.gene000366:CDS |
| AGATCAAAGACATCATCTAC+TGG | 0.478245 | 1.1:-31135338 | MS.gene000366:CDS |
| TAGAGAAAATGTTACTTTCA+CGG | 0.479481 | 1.1:-31135789 | MS.gene000366:CDS |
| CATGAAGGACAAATCAAAGA+TGG | 0.483329 | 1.1:-31135066 | MS.gene000366:CDS |
| CTGTTAGGAAGTGGTGGTCG+TGG | 0.499291 | 1.1:+31136007 | None:intergenic |
| TCCATCTACAACACCCATAG+TGG | 0.503301 | 1.1:-31135192 | MS.gene000366:CDS |
| GCACGCGTGGCGGTTGTTGA+AGG | 0.504466 | 1.1:-31135405 | MS.gene000366:CDS |
| GAATCCGTAGTGGATTCAAT+TGG | 0.505588 | 1.1:+31135842 | None:intergenic |
| ATGATAATTTCATACAACCT+TGG | 0.514644 | 1.1:+31135086 | None:intergenic |
| TAAAATAGCTGAAGCAAGGT+TGG | 0.515676 | 1.1:-31135120 | MS.gene000366:CDS |
| GCTGTTACTAACAAGAAAAG+TGG | 0.520506 | 1.1:-31135503 | MS.gene000366:CDS |
| GTCTAGCATCGAAAATGTCT+CGG | 0.531029 | 1.1:-31135165 | MS.gene000366:CDS |
| GCAGTCTGAGGCCGACATCA+TGG | 0.537665 | 1.1:-31135480 | MS.gene000366:CDS |
| ATCTCAAACTGACCGTCCAA+TGG | 0.542202 | 1.1:-31135255 | MS.gene000366:CDS |
| GTTGTATGAAATTATCATGA+AGG | 0.543055 | 1.1:-31135081 | MS.gene000366:CDS |
| GGAGACTCATAGCGAGGGAG+TGG | 0.545823 | 1.1:-31135595 | MS.gene000366:intron |
| AGTGCCAGTGTACTCGACTC+AGG | 0.551047 | 1.1:-31135816 | MS.gene000366:CDS |
| GAAGGATGAACCTAAATGGA+AGG | 0.565794 | 1.1:-31135387 | MS.gene000366:CDS |
| CTGTTACTAACAAGAAAAGT+GGG | 0.573605 | 1.1:-31135502 | MS.gene000366:CDS |
| GAACCGCCACTGTTAGGAAG+TGG | 0.583799 | 1.1:+31135998 | None:intergenic |
| CAATCACCGCCATTAACTAC+CGG | 0.587431 | 1.1:-31135926 | MS.gene000366:CDS |
| GGTGATTCCAGTTCTACACT+AGG | 0.587882 | 1.1:+31135863 | None:intergenic |
| CAAGAAAAGTGGGCAGTCTG+AGG | 0.589071 | 1.1:-31135492 | MS.gene000366:CDS |
| ATGCTAGACAAATCCACTAT+GGG | 0.590008 | 1.1:+31135179 | None:intergenic |
| GATGGATATGACAAATATCG+TGG | 0.597910 | 1.1:-31135617 | MS.gene000366:CDS |
| CCGTCCAATGGGGCAAAAGG+CGG | 0.601352 | 1.1:-31135243 | MS.gene000366:CDS |
| GTTTCACAATGGAGCACGCG+TGG | 0.613717 | 1.1:-31135418 | MS.gene000366:CDS |
| ATGTGCATCATCCATGATGT+CGG | 0.615074 | 1.1:+31135469 | None:intergenic |
| ATAATAAAATAGCTGAAGCA+AGG | 0.619943 | 1.1:-31135124 | MS.gene000366:CDS |
| ATCTACTGGGACATACTCAT+CGG | 0.621328 | 1.1:-31135324 | MS.gene000366:CDS |
| AAGGATGAACCTAAATGGAA+GGG | 0.623792 | 1.1:-31135386 | MS.gene000366:CDS |
| ATAAACTGCTTATTCAAACA+TGG | 0.626460 | 1.1:-31135709 | MS.gene000366:CDS |
| CCAGTGTACTCGACTCAGGT+TGG | 0.627157 | 1.1:-31135812 | MS.gene000366:CDS |
| ATCACCAATTGAATCCACTA+CGG | 0.630161 | 1.1:-31135846 | MS.gene000366:CDS |
| CCGCCACTGTTAGGAAGTGG+TGG | 0.631173 | 1.1:+31136001 | None:intergenic |
| ATGGATATGACAAATATCGT+GGG | 0.632677 | 1.1:-31135616 | MS.gene000366:CDS |
| GATCAAAGACATCATCTACT+GGG | 0.635030 | 1.1:-31135337 | MS.gene000366:CDS |
| GATTCCAGTTCTACACTAGG+TGG | 0.636949 | 1.1:+31135866 | None:intergenic |
| ACGTAAAACACGTTTCACAA+TGG | 0.638634 | 1.1:-31135429 | MS.gene000366:CDS |
| ATTTCCAAAGATCCAGTCGT+GGG | 0.640268 | 1.1:-31135680 | MS.gene000366:CDS |
| TCGTGGGAGACTCATAGCGA+GGG | 0.641783 | 1.1:-31135600 | MS.gene000366:CDS |
| CCAACCTGAGTCGAGTACAC+TGG | 0.641850 | 1.1:+31135812 | None:intergenic |
| ATCGTGGGAGACTCATAGCG+AGG | 0.654193 | 1.1:-31135601 | MS.gene000366:CDS |
| CATTTCCAAAGATCCAGTCG+TGG | 0.655124 | 1.1:-31135681 | MS.gene000366:CDS |
| TCACAATGGAGCACGCGTGG+CGG | 0.673207 | 1.1:-31135415 | MS.gene000366:CDS |
| CCACCACTTCCTAACAGTGG+CGG | 0.687212 | 1.1:-31136001 | MS.gene000366:CDS |
| CGACCACCACTTCCTAACAG+TGG | 0.700852 | 1.1:-31136004 | MS.gene000366:CDS |
| CTCAAACTGACCGTCCAATG+GGG | 0.704374 | 1.1:-31135253 | MS.gene000366:CDS |
| TCGTCACCGGTAGTTAATGG+CGG | 0.715090 | 1.1:+31135920 | None:intergenic |
| GGTTGGCAGAAAGCATACCA+AGG | 0.738499 | 1.1:-31135103 | MS.gene000366:CDS |
| TGGCACTTGAGAATCCGTAG+TGG | 0.741569 | 1.1:+31135832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGAGACATAAAAGAT+TGG | + | chr1.1:31135045-31135064 | None:intergenic | 20.0% |
| !!! | ATTTTGAGACATAAAAGATT+GGG | + | chr1.1:31135044-31135063 | None:intergenic | 20.0% |
| ! | ATAAACTGCTTATTCAAACA+TGG | - | chr1.1:31135299-31135318 | MS.gene000366:CDS | 25.0% |
| ! | ATAATAAAATAGCTGAAGCA+AGG | - | chr1.1:31135884-31135903 | MS.gene000366:CDS | 25.0% |
| ! | ATGATAATTTCATACAACCT+TGG | + | chr1.1:31135925-31135944 | None:intergenic | 25.0% |
| ! | GTTGTATGAAATTATCATGA+AGG | - | chr1.1:31135927-31135946 | MS.gene000366:CDS | 25.0% |
| ! | TTGTATTCTGAACAATCAAT+GGG | + | chr1.1:31135727-31135746 | None:intergenic | 25.0% |
| !!! | TAGAGAAAATGTTACTTTCA+CGG | - | chr1.1:31135219-31135238 | MS.gene000366:CDS | 25.0% |
| !!! | TTTTGAGACATAAAAGATTG+GGG | + | chr1.1:31135043-31135062 | None:intergenic | 25.0% |
| ATGGATATGACAAATATCGT+GGG | - | chr1.1:31135392-31135411 | MS.gene000366:CDS | 30.0% | |
| CTAGGTGGTTGAAAAATAAA+AGG | + | chr1.1:31135130-31135149 | None:intergenic | 30.0% | |
| CTGTTACTAACAAGAAAAGT+GGG | - | chr1.1:31135506-31135525 | MS.gene000366:CDS | 30.0% | |
| GTTGTATTCTGAACAATCAA+TGG | + | chr1.1:31135728-31135747 | None:intergenic | 30.0% | |
| TGTTGAATTGACATTGTCAT+TGG | - | chr1.1:31135461-31135480 | MS.gene000366:CDS | 30.0% | |
| AAGGATGAACCTAAATGGAA+GGG | - | chr1.1:31135622-31135641 | MS.gene000366:CDS | 35.0% | |
| ACGTAAAACACGTTTCACAA+TGG | - | chr1.1:31135579-31135598 | MS.gene000366:intron | 35.0% | |
| AGATCAAAGACATCATCTAC+TGG | - | chr1.1:31135670-31135689 | MS.gene000366:CDS | 35.0% | |
| ATCACCAATTGAATCCACTA+CGG | - | chr1.1:31135162-31135181 | MS.gene000366:CDS | 35.0% | |
| ATGCTAGACAAATCCACTAT+GGG | + | chr1.1:31135832-31135851 | None:intergenic | 35.0% | |
| CATGAAGGACAAATCAAAGA+TGG | - | chr1.1:31135942-31135961 | MS.gene000366:CDS | 35.0% | |
| GATCAAAGACATCATCTACT+GGG | - | chr1.1:31135671-31135690 | MS.gene000366:CDS | 35.0% | |
| GATGGATATGACAAATATCG+TGG | - | chr1.1:31135391-31135410 | MS.gene000366:CDS | 35.0% | |
| GCTGTTACTAACAAGAAAAG+TGG | - | chr1.1:31135505-31135524 | MS.gene000366:CDS | 35.0% | |
| GGTTGAAAAATAAAAGGTCG+TGG | + | chr1.1:31135124-31135143 | None:intergenic | 35.0% | |
| TAAAATAGCTGAAGCAAGGT+TGG | - | chr1.1:31135888-31135907 | MS.gene000366:CDS | 35.0% | |
| TGTTGAAGGATGAACCTAAA+TGG | - | chr1.1:31135617-31135636 | MS.gene000366:CDS | 35.0% | |
| ! | ACCAAAAAGCAGATAGCTTT+TGG | - | chr1.1:31135356-31135375 | MS.gene000366:CDS | 35.0% |
| ! | CAAAAAGCAGATAGCTTTTG+GGG | - | chr1.1:31135358-31135377 | MS.gene000366:CDS | 35.0% |
| ! | CCAAAAAGCAGATAGCTTTT+GGG | - | chr1.1:31135357-31135376 | MS.gene000366:CDS | 35.0% |
| ! | GAACAATCAATGGGATTTTC+TGG | + | chr1.1:31135718-31135737 | None:intergenic | 35.0% |
| !! | AATGTTACTTTCACGGAAGA+AGG | - | chr1.1:31135226-31135245 | MS.gene000366:CDS | 35.0% |
| !!! | TGACATTGTCATTGGTTTTG+CGG | - | chr1.1:31135469-31135488 | MS.gene000366:CDS | 35.0% |
| !!! | TTTTGGGGTAGAATCAAAGA+TGG | - | chr1.1:31135373-31135392 | MS.gene000366:CDS | 35.0% |
| ATCTACTGGGACATACTCAT+CGG | - | chr1.1:31135684-31135703 | MS.gene000366:CDS | 40.0% | |
| ATGTGCATCATCCATGATGT+CGG | + | chr1.1:31135542-31135561 | None:intergenic | 40.0% | |
| ATTGCTTCTCCCTTCCATTT+AGG | + | chr1.1:31135634-31135653 | None:intergenic | 40.0% | |
| ATTTCCAAAGATCCAGTCGT+GGG | - | chr1.1:31135328-31135347 | MS.gene000366:CDS | 40.0% | |
| GAAGGATGAACCTAAATGGA+AGG | - | chr1.1:31135621-31135640 | MS.gene000366:CDS | 40.0% | |
| GATGCTAGACAAATCCACTA+TGG | + | chr1.1:31135833-31135852 | None:intergenic | 40.0% | |
| GGCAGAAAAAACAACGTTTC+AGG | - | chr1.1:31135260-31135279 | MS.gene000366:CDS | 40.0% | |
| ! | GTCTAGCATCGAAAATGTCT+CGG | - | chr1.1:31135843-31135862 | MS.gene000366:CDS | 40.0% |
| !! | CCCAAAAGCTATCTGCTTTT+TGG | + | chr1.1:31135360-31135379 | None:intergenic | 40.0% |
| !! | GAATCCGTAGTGGATTCAAT+TGG | + | chr1.1:31135169-31135188 | None:intergenic | 40.0% |
| !! | TGGATTTTGAGAATCGTCAC+CGG | + | chr1.1:31135104-31135123 | None:intergenic | 40.0% |
| ATCTCAAACTGACCGTCCAA+TGG | - | chr1.1:31135753-31135772 | MS.gene000366:CDS | 45.0% | |
| ATGCCATCGAGATTTGAGTG+TGG | + | chr1.1:31135440-31135459 | None:intergenic | 45.0% | |
| CAAAAGGCGGCAAAAAGGAA+GGG | - | chr1.1:31135778-31135797 | MS.gene000366:CDS | 45.0% | |
| CAATCACCGCCATTAACTAC+CGG | - | chr1.1:31135082-31135101 | MS.gene000366:CDS | 45.0% | |
| CATTTCCAAAGATCCAGTCG+TGG | - | chr1.1:31135327-31135346 | MS.gene000366:CDS | 45.0% | |
| GAATCGTCACCGGTAGTTAA+TGG | + | chr1.1:31135094-31135113 | None:intergenic | 45.0% | |
| GATTCCAGTTCTACACTAGG+TGG | + | chr1.1:31135145-31135164 | None:intergenic | 45.0% | |
| GGCGGTGATTGGAACATATA+CGG | + | chr1.1:31135073-31135092 | None:intergenic | 45.0% | |
| GGTGATTCCAGTTCTACACT+AGG | + | chr1.1:31135148-31135167 | None:intergenic | 45.0% | |
| TATTGAGAACCGCCACTGTT+AGG | + | chr1.1:31135019-31135038 | None:intergenic | 45.0% | |
| TCAACCACCTAGTGTAGAAC+TGG | - | chr1.1:31135138-31135157 | MS.gene000366:CDS | 45.0% | |
| TCCATCTACAACACCCATAG+TGG | - | chr1.1:31135816-31135835 | MS.gene000366:CDS | 45.0% | |
| TCTCAAACTGACCGTCCAAT+GGG | - | chr1.1:31135754-31135773 | MS.gene000366:CDS | 45.0% | |
| ! | TCCACTATGGGTGTTGTAGA+TGG | + | chr1.1:31135820-31135839 | None:intergenic | 45.0% |
| AACTCCCACGACTGGATCTT+TGG | + | chr1.1:31135335-31135354 | None:intergenic | 50.0% | |
| CAAGAAAAGTGGGCAGTCTG+AGG | - | chr1.1:31135516-31135535 | MS.gene000366:CDS | 50.0% | |
| CGGTAGTTAATGGCGGTGAT+TGG | + | chr1.1:31135084-31135103 | None:intergenic | 50.0% | |
| CTCAAACTGACCGTCCAATG+GGG | - | chr1.1:31135755-31135774 | MS.gene000366:CDS | 50.0% | |
| GCAAAAGGCGGCAAAAAGGA+AGG | - | chr1.1:31135777-31135796 | MS.gene000366:CDS | 50.0% | |
| GCGGCAAAAAGGAAGGGAAA+GGG | - | chr1.1:31135784-31135803 | MS.gene000366:CDS | 50.0% | |
| GGTCCACACTCAAATCTCGA+TGG | - | chr1.1:31135434-31135453 | MS.gene000366:CDS | 50.0% | |
| TCGTCACCGGTAGTTAATGG+CGG | + | chr1.1:31135091-31135110 | None:intergenic | 50.0% | |
| TGGCACTTGAGAATCCGTAG+TGG | + | chr1.1:31135179-31135198 | None:intergenic | 50.0% | |
| ! | GGTTGGCAGAAAGCATACCA+AGG | - | chr1.1:31135905-31135924 | MS.gene000366:CDS | 50.0% |
| ! | TTTTGGTCAACTCCCACGAC+TGG | + | chr1.1:31135343-31135362 | None:intergenic | 50.0% |
| AGTGCCAGTGTACTCGACTC+AGG | - | chr1.1:31135192-31135211 | MS.gene000366:CDS | 55.0% | |
| ATCGTGGGAGACTCATAGCG+AGG | - | chr1.1:31135407-31135426 | MS.gene000366:CDS | 55.0% | |
| CCAACCTGAGTCGAGTACAC+TGG | + | chr1.1:31135199-31135218 | None:intergenic | 55.0% | |
| CCACCACTTCCTAACAGTGG+CGG | - | chr1.1:31135007-31135026 | MS.gene000366:CDS | 55.0% | |
| CCAGTGTACTCGACTCAGGT+TGG | - | chr1.1:31135196-31135215 | MS.gene000366:CDS | 55.0% | |
| CGACCACCACTTCCTAACAG+TGG | - | chr1.1:31135004-31135023 | MS.gene000366:CDS | 55.0% | |
| CTGTTAGGAAGTGGTGGTCG+TGG | + | chr1.1:31135004-31135023 | None:intergenic | 55.0% | |
| GAACCGCCACTGTTAGGAAG+TGG | + | chr1.1:31135013-31135032 | None:intergenic | 55.0% | |
| GGCGGCAAAAAGGAAGGGAA+AGG | - | chr1.1:31135783-31135802 | MS.gene000366:CDS | 55.0% | |
| GTTTCACAATGGAGCACGCG+TGG | - | chr1.1:31135590-31135609 | MS.gene000366:intron | 55.0% | |
| TCGTGGGAGACTCATAGCGA+GGG | - | chr1.1:31135408-31135427 | MS.gene000366:CDS | 55.0% | |
| TGACCGTCCAATGGGGCAAA+AGG | - | chr1.1:31135762-31135781 | MS.gene000366:CDS | 55.0% | |
| TGGGGCAAAAGGCGGCAAAA+AGG | - | chr1.1:31135773-31135792 | MS.gene000366:CDS | 55.0% | |
| ! | TTTGCCGCCTTTTGCCCCAT+TGG | + | chr1.1:31135772-31135791 | None:intergenic | 55.0% |
| !! | CGGAAGAAGGAGAGCGTTCT+AGG | - | chr1.1:31135239-31135258 | MS.gene000366:CDS | 55.0% |
| CCGCCACTGTTAGGAAGTGG+TGG | + | chr1.1:31135010-31135029 | None:intergenic | 60.0% | |
| CCGTCCAATGGGGCAAAAGG+CGG | - | chr1.1:31135765-31135784 | MS.gene000366:CDS | 60.0% | |
| GGAGACTCATAGCGAGGGAG+TGG | - | chr1.1:31135413-31135432 | MS.gene000366:CDS | 60.0% | |
| TCACAATGGAGCACGCGTGG+CGG | - | chr1.1:31135593-31135612 | MS.gene000366:intron | 60.0% | |
| ! | CCGCCTTTTGCCCCATTGGA+CGG | + | chr1.1:31135768-31135787 | None:intergenic | 60.0% |
| ! | GCAGTCTGAGGCCGACATCA+TGG | - | chr1.1:31135528-31135547 | MS.gene000366:intron | 60.0% |
| GCACGCGTGGCGGTTGTTGA+AGG | - | chr1.1:31135603-31135622 | MS.gene000366:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 31134995 | 31136035 | 31134995 | ID=MS.gene000366 |
| chr1.1 | mRNA | 31134995 | 31136035 | 31134995 | ID=MS.gene000366.t1;Parent=MS.gene000366 |
| chr1.1 | exon | 31135596 | 31136035 | 31135596 | ID=MS.gene000366.t1.exon1;Parent=MS.gene000366.t1 |
| chr1.1 | CDS | 31135596 | 31136035 | 31135596 | ID=cds.MS.gene000366.t1;Parent=MS.gene000366.t1 |
| chr1.1 | exon | 31134995 | 31135535 | 31134995 | ID=MS.gene000366.t1.exon2;Parent=MS.gene000366.t1 |
| chr1.1 | CDS | 31134995 | 31135535 | 31134995 | ID=cds.MS.gene000366.t1;Parent=MS.gene000366.t1 |
| Gene Sequence |
| Protein sequence |
