AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029093


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029093.t1 MTR_1g115575 99.157 593 5 0 1 593 1 593 0.0 1201
MS.gene029093.t1 MTR_7g100430 73.042 549 141 4 46 593 40 582 0.0 791
MS.gene029093.t1 MTR_2g096190 46.209 554 253 9 61 593 15 544 3.25e-147 436
MS.gene029093.t1 MTR_4g062100 47.126 522 237 8 58 563 16 514 3.06e-145 431
MS.gene029093.t1 MTR_7g117620 45.421 546 255 7 61 593 31 546 9.83e-137 409
MS.gene029093.t1 MTR_1g032100 45.436 482 246 7 127 593 52 531 7.15e-128 386
MS.gene029093.t1 MTR_7g100390 42.620 542 273 7 66 593 3 520 3.77e-125 379
MS.gene029093.t1 MTR_8g105260 43.659 481 256 4 127 593 59 538 7.96e-125 378
MS.gene029093.t1 MTR_1g069110 27.021 433 263 12 170 559 18 440 1.39e-27 116
MS.gene029093.t1 MTR_2g101310 22.951 610 356 14 4 567 69 610 1.17e-26 115
MS.gene029093.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 1.37e-20 96.3
MS.gene029093.t1 MTR_3g105650 22.707 458 298 12 138 577 8 427 5.03e-25 108
MS.gene029093.t1 MTR_2g101320 28.896 308 202 5 74 367 37 341 2.31e-21 99.0
MS.gene029093.t1 MTR_2g101320 26.949 449 250 15 130 522 137 563 2.20e-20 95.9
MS.gene029093.t1 MTR_2g101320 26.471 238 173 2 107 343 11 247 5.61e-19 91.3
MS.gene029093.t1 MTR_2g101310 25.403 248 184 1 96 343 1 247 3.34e-20 94.4
MS.gene029093.t1 MTR_2g101310 21.912 502 281 12 4 462 69 502 4.77e-11 65.9
MS.gene029093.t1 MTR_8g467780 25.469 373 214 10 76 445 10 321 2.10e-19 91.7
MS.gene029093.t1 MTR_2g096760 31.707 205 121 4 134 322 14 215 2.62e-19 91.3
MS.gene029093.t1 MTR_8g073260 26.756 299 178 6 169 452 46 318 5.15e-19 90.5
MS.gene029093.t1 MTR_8g066670 23.622 381 230 9 138 482 1078 1433 1.92e-17 87.0
MS.gene029093.t1 MTR_1g059930 27.090 299 177 8 169 452 47 319 4.99e-17 84.3
MS.gene029093.t1 MTR_8g068990 24.860 358 194 11 169 489 47 366 2.21e-16 82.4
MS.gene029093.t1 MTR_5g085830 26.098 410 256 12 169 562 312 690 3.11e-16 82.8
MS.gene029093.t1 MTR_7g451420 24.611 321 206 6 138 445 12 309 3.27e-16 80.5
MS.gene029093.t1 MTR_5g085810 27.128 376 238 11 169 533 338 688 4.82e-16 82.0
MS.gene029093.t1 MTR_5g085480 24.319 477 310 14 128 562 207 674 8.53e-16 81.3
MS.gene029093.t1 MTR_5g085480 24.319 477 310 14 128 562 47 514 9.87e-16 80.9
MS.gene029093.t1 MTR_8g072510 23.653 427 245 13 169 556 45 429 1.03e-15 80.1
MS.gene029093.t1 MTR_4g063830 30.288 208 124 7 132 322 13 216 1.20e-15 80.1
MS.gene029093.t1 MTR_8g069880 22.636 349 206 8 169 480 42 363 2.22e-15 79.3
MS.gene029093.t1 MTR_7g099570 27.917 240 158 6 135 361 9 246 5.18e-15 78.6
MS.gene029093.t1 MTR_7g021090 23.099 355 208 9 169 488 44 368 2.61e-14 75.5
MS.gene029093.t1 MTR_8g040930 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene029093.t1 MTR_8g041240 23.684 342 198 10 177 480 2 318 3.66e-14 75.1
MS.gene029093.t1 MTR_8g062410 25.000 336 200 10 138 453 13 316 8.01e-14 74.3
MS.gene029093.t1 MTR_5g043640 33.708 178 111 5 132 306 20 193 1.33e-13 71.2
MS.gene029093.t1 MTR_3g016210 24.917 301 178 9 169 445 45 321 3.56e-13 72.4
MS.gene029093.t1 MTR_3g055310 29.670 182 106 5 383 542 262 443 3.64e-13 72.4
MS.gene029093.t1 MTR_3g055310 29.670 182 106 5 383 542 288 469 3.80e-13 72.4
MS.gene029093.t1 MTR_3g055310 29.670 182 106 5 383 542 315 496 4.56e-13 72.4
MS.gene029093.t1 MTR_3g055310 29.670 182 106 5 383 542 290 471 4.64e-13 72.0
MS.gene029093.t1 MTR_3g055310 29.670 182 106 5 383 542 147 328 5.07e-13 71.2
MS.gene029093.t1 MTR_3g055310 29.670 182 106 5 383 542 210 391 5.09e-13 71.6
MS.gene029093.t1 MTR_8g039620 21.809 376 234 9 169 509 49 399 6.06e-13 71.6
MS.gene029093.t1 MTR_8g080080 26.183 317 194 9 72 352 77 389 8.19e-13 71.6
MS.gene029093.t1 MTR_1g112830 29.952 207 137 5 120 322 120 322 1.45e-12 70.9
MS.gene029093.t1 MTR_3g085830 28.342 187 125 3 131 309 105 290 2.05e-12 70.5
MS.gene029093.t1 MTR_3g085830 27.208 283 173 9 100 355 108 384 3.83e-12 69.7
MS.gene029093.t1 MTR_5g028190 25.284 352 185 11 213 544 213 506 1.57e-11 67.4
MS.gene029093.t1 MTR_6g027840 27.935 247 158 7 90 323 125 364 2.13e-11 67.0
MS.gene029093.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 2.69e-11 67.0
MS.gene029093.t1 MTR_4g116160 30.319 188 127 4 135 322 40 223 3.40e-11 66.2
MS.gene029093.t1 MTR_4g129470 30.392 204 98 6 128 294 9 205 4.01e-11 66.2
MS.gene029093.t1 MTR_4g021880 25.806 217 145 5 121 322 86 301 5.80e-11 65.1
MS.gene029093.t1 MTR_1g089180 28.947 228 134 8 114 317 198 421 7.48e-11 65.1
MS.gene029093.t1 MTR_2g438740 21.257 541 333 15 53 545 57 552 8.22e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029093.t1 AT3G12360 80.684 585 104 4 14 593 10 590 0.0 954
MS.gene029093.t1 AT3G12360 80.895 581 102 4 18 593 2 578 0.0 950
MS.gene029093.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene029093.t1 AT3G09550 71.502 586 148 3 24 593 25 607 0.0 833
MS.gene029093.t1 AT3G09550 71.502 586 148 3 24 593 32 614 0.0 832
MS.gene029093.t1 AT2G31820 43.534 549 271 7 60 593 138 662 7.75e-138 416
MS.gene029093.t1 AT1G05640 44.404 554 270 7 56 593 96 627 7.37e-136 410
MS.gene029093.t1 AT5G60070 46.595 558 244 13 61 593 20 548 3.29e-135 405
MS.gene029093.t1 AT2G01680 43.110 508 273 8 99 593 28 532 2.18e-129 390
MS.gene029093.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene029093.t1 AT1G07710 44.565 552 264 5 61 593 15 543 2.36e-129 390
MS.gene029093.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene029093.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene029093.t1 AT5G02620 43.774 514 248 7 61 556 5 495 4.11e-124 376
MS.gene029093.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene029093.t1 AT5G02620 41.899 537 248 8 61 556 5 518 1.12e-118 363
MS.gene029093.t1 AT1G10340 25.202 496 309 12 111 552 51 538 2.23e-34 138
MS.gene029093.t1 AT5G54710 27.308 520 284 17 68 552 97 557 1.47e-33 135
MS.gene029093.t1 AT5G54710 27.308 520 284 17 68 552 142 602 2.30e-33 135
MS.gene029093.t1 AT1G10340 24.593 492 313 11 111 552 51 534 2.36e-33 135
MS.gene029093.t1 AT1G34050 26.145 524 294 15 108 554 28 535 6.25e-33 134
MS.gene029093.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene029093.t1 AT2G24600 26.892 502 290 18 72 538 70 529 3.52e-32 131
MS.gene029093.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene029093.t1 AT4G03500 26.047 549 280 17 58 522 54 560 2.27e-30 126
MS.gene029093.t1 AT4G03500 26.047 549 280 17 58 522 77 583 2.41e-30 126
MS.gene029093.t1 AT1G03670 25.581 516 328 9 74 562 107 593 2.54e-26 114
MS.gene029093.t1 AT4G03490 27.674 430 267 12 133 551 180 576 5.93e-25 110
MS.gene029093.t1 AT4G03490 27.830 424 262 12 133 545 170 560 7.88e-25 109
MS.gene029093.t1 AT4G03490 27.830 424 262 12 133 545 180 570 8.09e-25 109
MS.gene029093.t1 AT4G03460 26.406 409 256 8 128 522 158 535 8.30e-24 106
MS.gene029093.t1 AT4G03460 26.406 409 256 8 128 522 190 567 8.97e-24 106
MS.gene029093.t1 AT4G03490 24.915 586 332 18 65 574 9 562 1.02e-23 106
MS.gene029093.t1 AT5G50140 22.913 515 297 16 126 563 22 513 1.04e-23 105
MS.gene029093.t1 AT4G03490 25.277 542 318 15 65 551 19 528 2.41e-23 105
MS.gene029093.t1 AT5G54700 28.435 313 159 9 223 523 20 279 1.38e-22 99.8
MS.gene029093.t1 AT4G10720 24.096 415 258 12 169 559 40 421 3.30e-22 100
MS.gene029093.t1 AT5G54700 27.809 356 182 12 202 523 2 316 6.72e-22 99.8
MS.gene029093.t1 AT4G10720 25.076 327 210 6 169 477 40 349 1.95e-21 97.4
MS.gene029093.t1 AT4G14390 24.722 449 281 11 128 556 226 637 2.14e-20 95.9
MS.gene029093.t1 AT4G14390 24.722 449 281 11 128 556 245 656 2.62e-20 95.5
MS.gene029093.t1 AT4G14390 24.889 450 280 12 128 556 245 657 2.97e-20 95.5
MS.gene029093.t1 AT4G03480 26.076 395 232 9 118 482 295 659 1.56e-19 93.2
MS.gene029093.t1 AT4G03480 26.076 395 232 9 118 482 292 656 1.64e-19 93.2
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT4G05040 28.736 348 199 9 118 447 211 527 8.96e-19 90.5
MS.gene029093.t1 AT5G15500 23.427 461 288 15 130 559 1 427 2.69e-18 88.2
MS.gene029093.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene029093.t1 AT2G24600 26.420 405 232 14 72 450 70 434 1.74e-17 86.3
MS.gene029093.t1 AT4G03450 24.505 555 306 17 58 528 45 570 1.80e-17 86.7
MS.gene029093.t1 AT5G51160 25.000 352 198 8 157 478 38 353 2.37e-17 85.5
MS.gene029093.t1 AT4G03450 24.505 555 306 17 58 528 45 570 5.25e-17 85.1
MS.gene029093.t1 AT4G03470 26.044 503 294 18 77 542 157 618 1.33e-16 84.0
MS.gene029093.t1 AT3G04140 27.622 286 160 8 100 342 105 386 2.91e-16 82.8
MS.gene029093.t1 AT1G14500 22.769 325 215 5 169 475 40 346 3.82e-15 78.6
MS.gene029093.t1 AT2G03430 34.659 176 106 5 135 306 16 186 8.47e-15 74.7
MS.gene029093.t1 AT4G14390 26.748 329 195 8 128 443 226 521 4.90e-13 72.4
MS.gene029093.t1 AT5G54620 29.570 186 119 2 169 342 40 225 8.05e-13 71.2
MS.gene029093.t1 AT5G54610 27.717 184 123 2 169 342 40 223 8.10e-13 71.2
MS.gene029093.t1 AT3G18670 23.111 450 296 12 123 530 113 554 1.08e-12 71.2
MS.gene029093.t1 AT2G28840 27.273 209 129 7 132 322 12 215 2.01e-12 70.1
MS.gene029093.t1 AT4G03440 23.126 467 308 12 104 550 258 693 3.93e-12 69.7
MS.gene029093.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene029093.t1 AT4G03440 23.126 467 308 12 104 550 251 686 4.34e-12 69.7
MS.gene029093.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene029093.t1 AT4G14400 23.242 512 310 20 75 538 71 547 3.99e-11 66.2
MS.gene029093.t1 AT3G18670 23.684 304 183 7 236 530 346 609 4.68e-11 66.2
MS.gene029093.t1 AT4G14400 23.242 512 310 20 75 538 137 613 5.65e-11 65.9

Find 138 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTGCATATGGCTGTAAA+AGG 0.222840 1.3:+78870068 MS.gene029093:CDS
TGATATTGATTCTCAAATAA+TGG 0.243648 1.3:+78868775 MS.gene029093:CDS
GTGGAGTTTCCTCAGCTCTT+TGG 0.250605 1.3:-78871140 None:intergenic
GTTATGCTTCCTGACAAATT+TGG 0.259995 1.3:+78870140 MS.gene029093:CDS
GAACGAGTGGGCTGCAATTC+TGG 0.267500 1.3:+78871498 MS.gene029093:CDS
ACCTCCAATTTCAACCTTCC+AGG 0.283929 1.3:+78868394 MS.gene029093:CDS
ACTCAAAGAGATTCAGAAAA+AGG 0.285730 1.3:+78868530 MS.gene029093:CDS
AAGGACATCCTCTCTCGATA+TGG 0.290107 1.3:+78870989 MS.gene029093:CDS
CCAACCTGGAAGGTTGAAAT+TGG 0.303178 1.3:-78868398 None:intergenic
TTCATTTGCAGCCATTGTTC+AGG 0.330505 1.3:+78869785 MS.gene029093:intron
CTGCTTCTCTTTCTTCCTCA+TGG 0.331730 1.3:-78871602 None:intergenic
GCAATTCTGGTTACAGTTGT+TGG 0.335512 1.3:+78871511 MS.gene029093:CDS
GATATTGATTCTCAAATAAT+GGG 0.348264 1.3:+78868776 MS.gene029093:CDS
AATTCGATCAACCTCGGAAT+TGG 0.351942 1.3:-78871671 None:intergenic
TGAAGAGTCATCAGATATAA+AGG 0.366092 1.3:+78870970 MS.gene029093:CDS
TTTGTTTACTGCTGCTGAAA+AGG 0.377535 1.3:+78868895 MS.gene029093:CDS
AGATGGCGACGGAGATATTT+CGG 0.380641 1.3:-78868585 None:intergenic
GTTCAAATTACCCTTGTTAG+AGG 0.385400 1.3:+78871361 MS.gene029093:CDS
GTGATAATATCCGGAGTTAT+TGG 0.388823 1.3:+78871538 MS.gene029093:CDS
GTGAAACTAAAGCAGAGAAA+AGG 0.392404 1.3:+78871383 MS.gene029093:CDS
TTTGCATTTAGCTGCTCGTC+CGG 0.403120 1.3:+78869968 MS.gene029093:CDS
GTCAAAGGATGGCAGCTTGT+TGG 0.404723 1.3:+78869917 MS.gene029093:CDS
GGGTCATCTTGATGTTGTTA+AGG 0.408314 1.3:+78868916 MS.gene029093:CDS
AGAAAGAGAAGCAGCTAGCC+AGG 0.411228 1.3:+78871611 MS.gene029093:CDS
AGGACATCCTCTCTCGATAT+GGG 0.415929 1.3:+78870990 MS.gene029093:CDS
CACCACTGTCACCGAGTTTG+TGG 0.435710 1.3:-78871182 None:intergenic
CTCGTCGCTGCTGTTATAAG+TGG 0.455896 1.3:-78869864 None:intergenic
TCCGTCGTCCGCGACGGCGC+CGG 0.456322 1.3:+78868607 MS.gene029093:CDS
AGGCTTTCACGATTTCTGTA+TGG 0.466846 1.3:-78869992 None:intergenic
TTGCATTTAGCTGCTCGTCC+GGG 0.469773 1.3:+78869969 MS.gene029093:CDS
GCTGCTATATTCACCGTACC+TGG 0.472210 1.3:+78871232 MS.gene029093:CDS
TCCTCAGTTCGTCCCTTGGT+TGG 0.473921 1.3:-78871036 None:intergenic
CATTTACGTTTGTGTCTGGC+AGG 0.475438 1.3:-78870892 None:intergenic
TTGTTTACTGCTGCTGAAAA+GGG 0.479987 1.3:+78868896 MS.gene029093:CDS
GCTCAGCAAAGACCCTCAAT+TGG 0.481998 1.3:+78870016 MS.gene029093:CDS
CTTTAGTTTCACCTCTAACA+AGG 0.482809 1.3:-78871372 None:intergenic
CCAAGCTTAAGCAAAACTAT+TGG 0.486154 1.3:+78869825 MS.gene029093:CDS
TGAGTTGGATCCACTTCTCC+TGG 0.491866 1.3:-78871629 None:intergenic
GGGGATAACGATGATGGATC+AGG 0.492044 1.3:+78871256 MS.gene029093:CDS
CAGTCCTCCGAGCCAATTGA+GGG 0.492228 1.3:-78870028 None:intergenic
TCCTTTCAAACTCAGGAAAA+CGG 0.494021 1.3:+78868636 MS.gene029093:CDS
TGAAACTAAAGCAGAGAAAA+GGG 0.501105 1.3:+78871384 MS.gene029093:CDS
AGGGCAAACTGCATTGCATA+TGG 0.501695 1.3:+78870058 MS.gene029093:CDS
TCAGCTCTTTGGATATATTG+TGG 0.502735 1.3:-78871129 None:intergenic
ATCGTTATCCCCACCAGGTA+CGG 0.503271 1.3:-78871245 None:intergenic
TTGAGGGTCTTTGCTGAGCA+AGG 0.503619 1.3:-78870012 None:intergenic
AATGCATTTACGTTTGTGTC+TGG 0.503703 1.3:-78870896 None:intergenic
TTGGAAATTGCAAGATCCAA+TGG 0.508338 1.3:+78869936 MS.gene029093:CDS
AAGTACGTGAAGCAAGTAAC+GGG 0.508570 1.3:+78868680 MS.gene029093:CDS
GCTCGGAGGACTGACAAGAA+AGG 0.509842 1.3:+78870038 MS.gene029093:CDS
GACGGAGATATTTCGGAAAG+TGG 0.514348 1.3:-78868578 None:intergenic
CTCGGAGGACTGACAAGAAA+GGG 0.519611 1.3:+78870039 MS.gene029093:CDS
TTCACGATTTCTGTATGGCC+CGG 0.525638 1.3:-78869987 None:intergenic
GTTGGAGGAGTGATAATATC+CGG 0.527167 1.3:+78871529 MS.gene029093:CDS
TTATTTGAGAATCAATATCA+AGG 0.528267 1.3:-78868772 None:intergenic
GCCGGCGCCGTCGCGGACGA+CGG 0.529146 1.3:-78868608 None:intergenic
CATTGCATATGGCTGTAAAA+GGG 0.531587 1.3:+78870069 MS.gene029093:CDS
GAAAGATGTTCACACACAGC+TGG 0.535788 1.3:+78871078 MS.gene029093:CDS
CCTGGTGGGGATAACGATGA+TGG 0.535860 1.3:+78871250 MS.gene029093:CDS
GCCATCTCCGTCGTCCGCGA+CGG 0.536247 1.3:+78868601 MS.gene029093:CDS
GCTGTGTTGCCAAATTTGTC+AGG 0.537540 1.3:-78870149 None:intergenic
GGAAAACGGATCGATCAAGC+AGG 0.537963 1.3:+78868650 MS.gene029093:CDS
CTATATTCACCGTACCTGGT+GGG 0.538227 1.3:+78871236 MS.gene029093:CDS
CAGCATTGCATGTGGCAACC+AGG 0.541967 1.3:+78870168 MS.gene029093:CDS
AAGCAGCTAGCCAGGAGAAG+TGG 0.542236 1.3:+78871619 MS.gene029093:CDS
CAAATAATGGGTACTTTGAG+TGG 0.544207 1.3:+78868788 MS.gene029093:CDS
TCAGTCCTCCGAGCCAATTG+AGG 0.545108 1.3:-78870029 None:intergenic
TCGGAAAGTGGGTTCTGTGT+TGG 0.547229 1.3:-78868566 None:intergenic
GACTAGAGCCGGCGCCGTCG+CGG 0.548417 1.3:-78868615 None:intergenic
TTGCATATTGCTGCTAGTCA+AGG 0.549825 1.3:+78869001 MS.gene029093:CDS
CTCTGAATGATGCCATGAGT+TGG 0.551504 1.3:-78871644 None:intergenic
AAGAGCTGAGGAAACTCCAC+AGG 0.552962 1.3:+78871143 MS.gene029093:CDS
ATTCTGGTTACAGTTGTTGG+AGG 0.554005 1.3:+78871514 MS.gene029093:CDS
GATTAACAAGCTCATGTGGT+TGG 0.554304 1.3:+78871417 MS.gene029093:CDS
AAGGGACGAACTGAGGAAAA+CGG 0.554349 1.3:+78871042 MS.gene029093:CDS
ACCTGGAAGGTTGAAATTGG+AGG 0.558297 1.3:-78868395 None:intergenic
GCCGTCGCGGACGACGGAGA+TGG 0.559929 1.3:-78868602 None:intergenic
CCATCATCGTTATCCCCACC+AGG 0.564948 1.3:-78871250 None:intergenic
TTTAGTTTCACCTCTAACAA+GGG 0.565107 1.3:-78871371 None:intergenic
GAGTTTGAAAGGACTAGAGC+CGG 0.567456 1.3:-78868626 None:intergenic
GCAAAGACCCTCAATTGGCT+CGG 0.569896 1.3:+78870021 MS.gene029093:CDS
GCTCTAGTCCTTTCAAACTC+AGG 0.572097 1.3:+78868629 MS.gene029093:CDS
CATTGTTAATTCCTTCCCTG+TGG 0.572226 1.3:-78871159 None:intergenic
AGCAGAGAAAAGGGTAGTTG+AGG 0.573019 1.3:+78871393 MS.gene029093:CDS
TCGTCGGTCGGAGGAACGAG+TGG 0.574175 1.3:+78871485 MS.gene029093:CDS
CGCTGCTGTTATAAGTGGAG+TGG 0.575162 1.3:-78869859 None:intergenic
GCTGCTAGTCAAGGACATCA+TGG 0.575482 1.3:+78869010 MS.gene029093:CDS
ATAAGTGGAGTGGCGTTGGA+TGG 0.578501 1.3:-78869849 None:intergenic
GCAGCTCAAAGAGGTGATGT+TGG 0.583391 1.3:+78868731 MS.gene029093:CDS
ACGGAGATATTTCGGAAAGT+GGG 0.587917 1.3:-78868577 None:intergenic
GTGAATGAAGAGAATGAGCT+TGG 0.588279 1.3:+78868863 MS.gene029093:CDS
TGTTATAAGTGGAGTGGCGT+TGG 0.592828 1.3:-78869853 None:intergenic
TTCAGAGTTCTCCAATTCCG+AGG 0.592884 1.3:+78871660 MS.gene029093:CDS
GCTATATTCACCGTACCTGG+TGG 0.598478 1.3:+78871235 MS.gene029093:CDS
ATCTAGTAAAACCTGAACAA+TGG 0.600510 1.3:-78869796 None:intergenic
CGCATAAATTCGATCAACCT+CGG 0.601587 1.3:-78871677 None:intergenic
GTTGGCTTCTGTCTGTACCT+CGG 0.602568 1.3:+78871435 MS.gene029093:CDS
CTGAGGAAACTCCACAGGGA+AGG 0.603249 1.3:+78871148 MS.gene029093:CDS
TATATTCACCGTACCTGGTG+GGG 0.603908 1.3:+78871237 MS.gene029093:CDS
GAAGTACGTGAAGCAAGTAA+CGG 0.604371 1.3:+78868679 MS.gene029093:CDS
CATACATAGTCGTCGGTCGG+AGG 0.604518 1.3:+78871476 MS.gene029093:CDS
GGAGAAGTGGATCCAACTCA+TGG 0.605497 1.3:+78871632 MS.gene029093:CDS
AGAAGAAGAACCAACCTGGA+AGG 0.609441 1.3:-78868408 None:intergenic
GACGAGAGGGCACGTCGAAG+TGG 0.609993 1.3:+78869881 MS.gene029093:CDS
GGTGAATGAACTTCTGTCAA+AGG 0.612992 1.3:+78869902 MS.gene029093:CDS
TTATAACAGCAGCGACGAGA+GGG 0.613377 1.3:+78869868 MS.gene029093:CDS
AATGAACTTCTGTCAAAGGA+TGG 0.613527 1.3:+78869906 MS.gene029093:CDS
TCTGATGACTCTTCAGAGAG+AGG 0.615975 1.3:-78870962 None:intergenic
GCCTCTTCATACATAGTCGT+CGG 0.616338 1.3:+78871469 MS.gene029093:CDS
AATTAACAATGCCACAAACT+CGG 0.616650 1.3:+78871171 MS.gene029093:CDS
CGTCGGTCGGAGGAACGAGT+GGG 0.619749 1.3:+78871486 MS.gene029093:CDS
ACCAACCAAGGGACGAACTG+AGG 0.620407 1.3:+78871035 MS.gene029093:CDS
CTAACGAGCTCAACCAACCA+AGG 0.621035 1.3:+78871023 MS.gene029093:CDS
CTTCATCTAGCAGCTCAAAG+AGG 0.623399 1.3:+78868722 MS.gene029093:CDS
ACCGACGACTATGTATGAAG+AGG 0.628246 1.3:-78871470 None:intergenic
CTTATAACAGCAGCGACGAG+AGG 0.631608 1.3:+78869867 MS.gene029093:CDS
TGCCACAAACTCGGTGACAG+TGG 0.632510 1.3:+78871180 MS.gene029093:CDS
AGTCATAGTGCCAATAACTC+CGG 0.636725 1.3:-78871548 None:intergenic
CTTCATACATAGTCGTCGGT+CGG 0.637629 1.3:+78871473 MS.gene029093:CDS
TGGCAACACAGCATTGCATG+TGG 0.637663 1.3:+78870160 MS.gene029093:CDS
GGACATCCTCTCTCGATATG+GGG 0.638757 1.3:+78870991 MS.gene029093:CDS
TGACTAGCAGCAATATGCAA+AGG 0.639675 1.3:-78868998 None:intergenic
ACAATATATCCAAAGAGCTG+AGG 0.644642 1.3:+78871131 MS.gene029093:CDS
AAGACCCTCAATTGGCTCGG+AGG 0.651684 1.3:+78870024 MS.gene029093:CDS
GCGGACGACGGAGATGGCGA+CGG 0.652416 1.3:-78868596 None:intergenic
GGCTTCTGTCTGTACCTCGG+TGG 0.655940 1.3:+78871438 MS.gene029093:CDS
GAAAACGGATCGATCAAGCA+GGG 0.663000 1.3:+78868651 MS.gene029093:CDS
TAACGATGATGGATCAGGAG+TGG 0.663853 1.3:+78871261 MS.gene029093:CDS
TAAGTGCCCCATATCGAGAG+AGG 0.665007 1.3:-78870997 None:intergenic
AGGTGATTAACAAGCTCATG+TGG 0.671742 1.3:+78871413 MS.gene029093:CDS
CACAAACTCGGTGACAGTGG+TGG 0.691648 1.3:+78871183 MS.gene029093:CDS
TAACGAGCTCAACCAACCAA+GGG 0.693605 1.3:+78871024 MS.gene029093:CDS
TTTGAGAATCAATATCAAGG+AGG 0.702674 1.3:-78868769 None:intergenic
CTATGACTTACTATGTAGTG+AGG 0.708286 1.3:+78871563 MS.gene029093:CDS
CTAAGAGAACAAGATCCATG+AGG 0.720939 1.3:+78871587 MS.gene029093:CDS
AGAGCTGAGGAAACTCCACA+GGG 0.730372 1.3:+78871144 MS.gene029093:CDS
AAAAGGGCAGAGCTGTGACG+TGG 0.742175 1.3:+78870085 MS.gene029093:CDS
AGAGGCAATAAATGCCACCG+AGG 0.783697 1.3:-78871452 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGTATTTTTTTTTTT+TGG + chr1.3:78869340-78869359 MS.gene029093:intron 10.0%
!!! TTTTTTTAATAAGCTATTAA+TGG + chr1.3:78869554-78869573 MS.gene029093:intron 10.0%
!! AAAAATTAAAAGAAAACAAG+AGG - chr1.3:78870755-78870774 None:intergenic 15.0%
!!! AATATTAGATTTTTCATTCA+AGG - chr1.3:78870828-78870847 None:intergenic 15.0%
!!! ATTTTGCTTTTTGTAAAAAT+GGG + chr1.3:78869123-78869142 MS.gene029093:intron 15.0%
!!! TATTTTGCTTTTTGTAAAAA+TGG + chr1.3:78869122-78869141 MS.gene029093:intron 15.0%
!! AATTTAATCAGATATACTTC+TGG - chr1.3:78869442-78869461 None:intergenic 20.0%
!! GCAACTACTTAAATAAATAA+AGG - chr1.3:78870557-78870576 None:intergenic 20.0%
!! TAATACTACTACTACAAATA+TGG - chr1.3:78870327-78870346 None:intergenic 20.0%
!! TTATTTGAGAATCAATATCA+AGG - chr1.3:78868775-78868794 None:intergenic 20.0%
!!! GATATTGATTCTCAAATAAT+GGG + chr1.3:78868776-78868795 MS.gene029093:CDS 20.0%
!!! TATTTTGAATGAATTGACTT+TGG + chr1.3:78869157-78869176 MS.gene029093:intron 20.0%
!!! TGATATTGATTCTCAAATAA+TGG + chr1.3:78868775-78868794 MS.gene029093:CDS 20.0%
!!! TGTTATTTTGCTTTGAAAAT+TGG + chr1.3:78870631-78870650 MS.gene029093:intron 20.0%
!!! TTTTTTTTGGAACATATTCT+TGG + chr1.3:78869353-78869372 MS.gene029093:intron 20.0%
! AAACATGTTATATGAGACAA+GGG + chr1.3:78870697-78870716 MS.gene029093:intron 25.0%
! AACATCAAAACAAAGGAAAA+AGG - chr1.3:78869083-78869102 None:intergenic 25.0%
! AAGGTAAAACGATTTATGTT+TGG + chr1.3:78869194-78869213 MS.gene029093:intron 25.0%
! AATAAGACAACATTGATGTT+TGG - chr1.3:78869659-78869678 None:intergenic 25.0%
! AGGTAAAACGATTTATGTTT+GGG + chr1.3:78869195-78869214 MS.gene029093:intron 25.0%
! ATTAACTTACTCGAACAAAT+CGG + chr1.3:78870277-78870296 MS.gene029093:intron 25.0%
! CTCAATTATGATGCTATTAA+TGG + chr1.3:78869528-78869547 MS.gene029093:intron 25.0%
! TCATAATTGAGTTTCTTCAT+TGG - chr1.3:78869519-78869538 None:intergenic 25.0%
! TTACAGTGAAGTAAAAAGAT+GGG - chr1.3:78868443-78868462 None:intergenic 25.0%
! TTGAGTATTTATCTTGCTTA+AGG + chr1.3:78869490-78869509 MS.gene029093:intron 25.0%
! TTTAAGTAGTTGCAAGTATA+AGG + chr1.3:78870564-78870583 MS.gene029093:intron 25.0%
! TTTACAGTGAAGTAAAAAGA+TGG - chr1.3:78868444-78868463 None:intergenic 25.0%
!! AACATCAATGTTGTCTTATT+TGG + chr1.3:78869659-78869678 MS.gene029093:intron 25.0%
!! CAATTTTGTCTAGAAGTTTT+GGG + chr1.3:78870729-78870748 MS.gene029093:intron 25.0%
!! TATATTGTGGACATTTTTGT+TGG - chr1.3:78871119-78871138 None:intergenic 25.0%
!! TCAATTTTGTCTAGAAGTTT+TGG + chr1.3:78870728-78870747 MS.gene029093:intron 25.0%
!!! ATTGTTGTTTCTCAATTTCT+TGG + chr1.3:78870845-78870864 MS.gene029093:intron 25.0%
!!! TTTTCCTTTGTTTTGATGTT+GGG + chr1.3:78869083-78869102 MS.gene029093:intron 25.0%
!!! TTTTTCCTTTGTTTTGATGT+TGG + chr1.3:78869082-78869101 MS.gene029093:intron 25.0%
AAATCCCAACATCAAAACAA+AGG - chr1.3:78869090-78869109 None:intergenic 30.0%
AAGTCTCCAATATTGAAAAC+AGG + chr1.3:78870364-78870383 MS.gene029093:intron 30.0%
AATTAACAATGCCACAAACT+CGG + chr1.3:78871171-78871190 MS.gene029093:CDS 30.0%
ACATAGCATTAACTCTACTA+CGG - chr1.3:78869625-78869644 None:intergenic 30.0%
ACTCAAAGAGATTCAGAAAA+AGG + chr1.3:78868530-78868549 MS.gene029093:CDS 30.0%
ATCTAGTAAAACCTGAACAA+TGG - chr1.3:78869799-78869818 None:intergenic 30.0%
GAAACATGTTATATGAGACA+AGG + chr1.3:78870696-78870715 MS.gene029093:intron 30.0%
GTGCACACTACTTAAAAAAA+TGG - chr1.3:78870667-78870686 None:intergenic 30.0%
TACAGTGAAGTAAAAAGATG+GGG - chr1.3:78868442-78868461 None:intergenic 30.0%
TGAAACTAAAGCAGAGAAAA+GGG + chr1.3:78871384-78871403 MS.gene029093:CDS 30.0%
TGAAGAGTCATCAGATATAA+AGG + chr1.3:78870970-78870989 MS.gene029093:CDS 30.0%
TTAACTTACTCGAACAAATC+GGG + chr1.3:78870278-78870297 MS.gene029093:intron 30.0%
TTTGAGAATCAATATCAAGG+AGG - chr1.3:78868772-78868791 None:intergenic 30.0%
! AAGATTTTCAGCAATGTCAA+GGG - chr1.3:78870942-78870961 None:intergenic 30.0%
! GTTTCTAAAAAGAATCGATC+TGG + chr1.3:78868968-78868987 MS.gene029093:CDS 30.0%
! TAGCTACCTGTTTTCAATAT+TGG - chr1.3:78870373-78870392 None:intergenic 30.0%
! TTTAGTTTCACCTCTAACAA+GGG - chr1.3:78871374-78871393 None:intergenic 30.0%
!! CAATAGTTTTGCTTAAGCTT+GGG - chr1.3:78869827-78869846 None:intergenic 30.0%
!! TATTGCGCTTTTTACATCTT+TGG + chr1.3:78871327-78871346 MS.gene029093:CDS 30.0%
!! TTTGGCTAAAATTGAGTTGA+AGG + chr1.3:78869175-78869194 MS.gene029093:intron 30.0%
!!! ATGCAAAGCATTTTTTCCAT+TGG - chr1.3:78869955-78869974 None:intergenic 30.0%
!!! TTGTTTTGATGTTGGGATTT+TGG + chr1.3:78869090-78869109 MS.gene029093:intron 30.0%
AAGTAGTTGCAAGTATAAGG+TGG + chr1.3:78870567-78870586 MS.gene029093:intron 35.0%
AATGAACTTCTGTCAAAGGA+TGG + chr1.3:78869906-78869925 MS.gene029093:CDS 35.0%
AATGCATTTACGTTTGTGTC+TGG - chr1.3:78870899-78870918 None:intergenic 35.0%
ACAATATATCCAAAGAGCTG+AGG + chr1.3:78871131-78871150 MS.gene029093:CDS 35.0%
ACAGTGAAGTAAAAAGATGG+GGG - chr1.3:78868441-78868460 None:intergenic 35.0%
ACATGCTCAAAAGTAACTAG+GGG - chr1.3:78870798-78870817 None:intergenic 35.0%
AGATTACTGCAAAGAACAGA+AGG - chr1.3:78869755-78869774 None:intergenic 35.0%
CATTGCATATGGCTGTAAAA+GGG + chr1.3:78870069-78870088 MS.gene029093:CDS 35.0%
CCAAGCTTAAGCAAAACTAT+TGG + chr1.3:78869825-78869844 MS.gene029093:CDS 35.0%
CTATGACTTACTATGTAGTG+AGG + chr1.3:78871563-78871582 MS.gene029093:CDS 35.0%
CTTGAGTAGCTTCAATTTGT+GGG + chr1.3:78869698-78869717 MS.gene029093:intron 35.0%
GACATGCTCAAAAGTAACTA+GGG - chr1.3:78870799-78870818 None:intergenic 35.0%
GCTTCAAGTAGAATCAGTTA+TGG + chr1.3:78869293-78869312 MS.gene029093:intron 35.0%
GTGAAACTAAAGCAGAGAAA+AGG + chr1.3:78871383-78871402 MS.gene029093:CDS 35.0%
GTGATAATATCCGGAGTTAT+TGG + chr1.3:78871538-78871557 MS.gene029093:CDS 35.0%
GTTATGCTTCCTGACAAATT+TGG + chr1.3:78870140-78870159 MS.gene029093:CDS 35.0%
GTTCAAATTACCCTTGTTAG+AGG + chr1.3:78871361-78871380 MS.gene029093:CDS 35.0%
TCAGCTCTTTGGATATATTG+TGG - chr1.3:78871132-78871151 None:intergenic 35.0%
TCAGTTATGGAGACAAAATC+AGG + chr1.3:78869306-78869325 MS.gene029093:intron 35.0%
TCATCACTGTATGTACTGTA+TGG - chr1.3:78870247-78870266 None:intergenic 35.0%
TCCTTTCAAACTCAGGAAAA+CGG + chr1.3:78868636-78868655 MS.gene029093:CDS 35.0%
TGACATGCTCAAAAGTAACT+AGG - chr1.3:78870800-78870819 None:intergenic 35.0%
TGCTACAAAAAATGCAAACG+AGG + chr1.3:78870397-78870416 MS.gene029093:intron 35.0%
TTGGAAATTGCAAGATCCAA+TGG + chr1.3:78869936-78869955 MS.gene029093:CDS 35.0%
TTGTTTACTGCTGCTGAAAA+GGG + chr1.3:78868896-78868915 MS.gene029093:CDS 35.0%
TTTGTTTACTGCTGCTGAAA+AGG + chr1.3:78868895-78868914 MS.gene029093:CDS 35.0%
! CTTTAGTTTCACCTCTAACA+AGG - chr1.3:78871375-78871394 None:intergenic 35.0%
! GAAGATTTTCAGCAATGTCA+AGG - chr1.3:78870943-78870962 None:intergenic 35.0%
! TACGCTTTTACGTTTATTGC+AGG + chr1.3:78868497-78868516 MS.gene029093:intron 35.0%
! TAGCTTCAATTTGTGGGTTA+TGG + chr1.3:78869704-78869723 MS.gene029093:intron 35.0%
! TTTTACATCTTTGGCTGTTG+TGG + chr1.3:78871336-78871355 MS.gene029093:CDS 35.0%
!! CAAATAATGGGTACTTTGAG+TGG + chr1.3:78868788-78868807 MS.gene029093:CDS 35.0%
!! CCAATAGTTTTGCTTAAGCT+TGG - chr1.3:78869828-78869847 None:intergenic 35.0%
!!! GACATTTTTGTTGGTTCTCT+TGG - chr1.3:78871110-78871129 None:intergenic 35.0%
AAGTACGTGAAGCAAGTAAC+GGG + chr1.3:78868680-78868699 MS.gene029093:CDS 40.0%
AATTCGATCAACCTCGGAAT+TGG - chr1.3:78871674-78871693 None:intergenic 40.0%
ACGGAGATATTTCGGAAAGT+GGG - chr1.3:78868580-78868599 None:intergenic 40.0%
AGATAGAAGAAGAACCAACC+TGG - chr1.3:78868415-78868434 None:intergenic 40.0%
AGGCTTTCACGATTTCTGTA+TGG - chr1.3:78869995-78870014 None:intergenic 40.0%
AGGTGATTAACAAGCTCATG+TGG + chr1.3:78871413-78871432 MS.gene029093:CDS 40.0%
AGTCATAGTGCCAATAACTC+CGG - chr1.3:78871551-78871570 None:intergenic 40.0%
CATTGTTAATTCCTTCCCTG+TGG - chr1.3:78871162-78871181 None:intergenic 40.0%
CCACAAATTGAAGCTACTCA+AGG - chr1.3:78869700-78869719 None:intergenic 40.0%
CCTTGAGTAGCTTCAATTTG+TGG + chr1.3:78869697-78869716 MS.gene029093:intron 40.0%
CGCATAAATTCGATCAACCT+CGG - chr1.3:78871680-78871699 None:intergenic 40.0%
CTAAGAGAACAAGATCCATG+AGG + chr1.3:78871587-78871606 MS.gene029093:CDS 40.0%
GAAGTACGTGAAGCAAGTAA+CGG + chr1.3:78868679-78868698 MS.gene029093:CDS 40.0%
GATTAACAAGCTCATGTGGT+TGG + chr1.3:78871417-78871436 MS.gene029093:CDS 40.0%
GCATTGCATATGGCTGTAAA+AGG + chr1.3:78870068-78870087 MS.gene029093:CDS 40.0%
GCTACTCAAGGTCTAACAAT+TGG - chr1.3:78869688-78869707 None:intergenic 40.0%
GGGTCATCTTGATGTTGTTA+AGG + chr1.3:78868916-78868935 MS.gene029093:CDS 40.0%
GGTGAATGAACTTCTGTCAA+AGG + chr1.3:78869902-78869921 MS.gene029093:CDS 40.0%
GTGAATGAAGAGAATGAGCT+TGG + chr1.3:78868863-78868882 MS.gene029093:CDS 40.0%
GTTGGAGGAGTGATAATATC+CGG + chr1.3:78871529-78871548 MS.gene029093:CDS 40.0%
TGACTAGCAGCAATATGCAA+AGG - chr1.3:78869001-78869020 None:intergenic 40.0%
TTCATTTGCAGCCATTGTTC+AGG + chr1.3:78869785-78869804 MS.gene029093:intron 40.0%
TTGCATATTGCTGCTAGTCA+AGG + chr1.3:78869001-78869020 MS.gene029093:CDS 40.0%
! ATTCTGGTTACAGTTGTTGG+AGG + chr1.3:78871514-78871533 MS.gene029093:CDS 40.0%
! GCAATTCTGGTTACAGTTGT+TGG + chr1.3:78871511-78871530 MS.gene029093:CDS 40.0%
! GCTTTTACGTTTATTGCAGG+TGG + chr1.3:78868500-78868519 MS.gene029093:intron 40.0%
! TCCGTTTTCCTGAGTTTGAA+AGG - chr1.3:78868640-78868659 None:intergenic 40.0%
AACCAGGAAAAAGCGAGTAG+AGG + chr1.3:78870184-78870203 MS.gene029093:CDS 45.0%
AAGGACATCCTCTCTCGATA+TGG + chr1.3:78870989-78871008 MS.gene029093:CDS 45.0%
AAGGGACGAACTGAGGAAAA+CGG + chr1.3:78871042-78871061 MS.gene029093:CDS 45.0%
ACCGACGACTATGTATGAAG+AGG - chr1.3:78871473-78871492 None:intergenic 45.0%
ACCTCCAATTTCAACCTTCC+AGG + chr1.3:78868394-78868413 MS.gene029093:CDS 45.0%
ACCTGGAAGGTTGAAATTGG+AGG - chr1.3:78868398-78868417 None:intergenic 45.0%
AGAAGAAGAACCAACCTGGA+AGG - chr1.3:78868411-78868430 None:intergenic 45.0%
AGATGGCGACGGAGATATTT+CGG - chr1.3:78868588-78868607 None:intergenic 45.0%
AGCAGAGAAAAGGGTAGTTG+AGG + chr1.3:78871393-78871412 MS.gene029093:CDS 45.0%
AGGACATCCTCTCTCGATAT+GGG + chr1.3:78870990-78871009 MS.gene029093:CDS 45.0%
AGGGCAAACTGCATTGCATA+TGG + chr1.3:78870058-78870077 MS.gene029093:CDS 45.0%
CATTTACGTTTGTGTCTGGC+AGG - chr1.3:78870895-78870914 None:intergenic 45.0%
CCAACCTGGAAGGTTGAAAT+TGG - chr1.3:78868401-78868420 None:intergenic 45.0%
CCAATTTCAACCTTCCAGGT+TGG + chr1.3:78868398-78868417 MS.gene029093:intron 45.0%
CTATATTCACCGTACCTGGT+GGG + chr1.3:78871236-78871255 MS.gene029093:CDS 45.0%
CTCTGAATGATGCCATGAGT+TGG - chr1.3:78871647-78871666 None:intergenic 45.0%
CTGCTTCTCTTTCTTCCTCA+TGG - chr1.3:78871605-78871624 None:intergenic 45.0%
CTTCATACATAGTCGTCGGT+CGG + chr1.3:78871473-78871492 MS.gene029093:CDS 45.0%
CTTCATCTAGCAGCTCAAAG+AGG + chr1.3:78868722-78868741 MS.gene029093:CDS 45.0%
GAAAACGGATCGATCAAGCA+GGG + chr1.3:78868651-78868670 MS.gene029093:CDS 45.0%
GAAAGATGTTCACACACAGC+TGG + chr1.3:78871078-78871097 MS.gene029093:CDS 45.0%
GACGGAGATATTTCGGAAAG+TGG - chr1.3:78868581-78868600 None:intergenic 45.0%
GAGTTTGAAAGGACTAGAGC+CGG - chr1.3:78868629-78868648 None:intergenic 45.0%
GCCTCTTCATACATAGTCGT+CGG + chr1.3:78871469-78871488 MS.gene029093:CDS 45.0%
GCTCTAGTCCTTTCAAACTC+AGG + chr1.3:78868629-78868648 MS.gene029093:CDS 45.0%
GCTGTGTTGCCAAATTTGTC+AGG - chr1.3:78870152-78870171 None:intergenic 45.0%
TAACGAGCTCAACCAACCAA+GGG + chr1.3:78871024-78871043 MS.gene029093:CDS 45.0%
TATATTCACCGTACCTGGTG+GGG + chr1.3:78871237-78871256 MS.gene029093:CDS 45.0%
TCTGATGACTCTTCAGAGAG+AGG - chr1.3:78870965-78870984 None:intergenic 45.0%
TGTTATAAGTGGAGTGGCGT+TGG - chr1.3:78869856-78869875 None:intergenic 45.0%
TTATAACAGCAGCGACGAGA+GGG + chr1.3:78869868-78869887 MS.gene029093:CDS 45.0%
TTCACGATTTCTGTATGGCC+CGG - chr1.3:78869990-78870009 None:intergenic 45.0%
TTCAGAGTTCTCCAATTCCG+AGG + chr1.3:78871660-78871679 MS.gene029093:CDS 45.0%
TTTGCATTTAGCTGCTCGTC+CGG + chr1.3:78869968-78869987 MS.gene029093:CDS 45.0%
!! CAATGTCAAGGGCTGTTTTG+TGG - chr1.3:78870931-78870950 None:intergenic 45.0%
!! TAACGATGATGGATCAGGAG+TGG + chr1.3:78871261-78871280 MS.gene029093:CDS 45.0%
!!! TACCTCTACTCGCTTTTTCC+TGG - chr1.3:78870189-78870208 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTGAA+AGG - chr1.3:78869399-78869418 None:intergenic 5.0%
AAGAGCTGAGGAAACTCCAC+AGG + chr1.3:78871143-78871162 MS.gene029093:CDS 50.0%
AGAAAGAGAAGCAGCTAGCC+AGG + chr1.3:78871611-78871630 MS.gene029093:CDS 50.0%
AGAGCTGAGGAAACTCCACA+GGG + chr1.3:78871144-78871163 MS.gene029093:CDS 50.0%
AGAGGCAATAAATGCCACCG+AGG - chr1.3:78871455-78871474 None:intergenic 50.0%
ATCGTTATCCCCACCAGGTA+CGG - chr1.3:78871248-78871267 None:intergenic 50.0%
CGCTGCTGTTATAAGTGGAG+TGG - chr1.3:78869862-78869881 None:intergenic 50.0%
CTAACGAGCTCAACCAACCA+AGG + chr1.3:78871023-78871042 MS.gene029093:CDS 50.0%
CTCGGAGGACTGACAAGAAA+GGG + chr1.3:78870039-78870058 MS.gene029093:CDS 50.0%
CTCGTCGCTGCTGTTATAAG+TGG - chr1.3:78869867-78869886 None:intergenic 50.0%
CTTATAACAGCAGCGACGAG+AGG + chr1.3:78869867-78869886 MS.gene029093:CDS 50.0%
GCAAAGACCCTCAATTGGCT+CGG + chr1.3:78870021-78870040 MS.gene029093:CDS 50.0%
GCAGCTCAAAGAGGTGATGT+TGG + chr1.3:78868731-78868750 MS.gene029093:CDS 50.0%
GCTATATTCACCGTACCTGG+TGG + chr1.3:78871235-78871254 MS.gene029093:CDS 50.0%
GCTCAGCAAAGACCCTCAAT+TGG + chr1.3:78870016-78870035 MS.gene029093:CDS 50.0%
GCTGCTAGTCAAGGACATCA+TGG + chr1.3:78869010-78869029 MS.gene029093:CDS 50.0%
GCTGCTATATTCACCGTACC+TGG + chr1.3:78871232-78871251 MS.gene029093:CDS 50.0%
GGAAAACGGATCGATCAAGC+AGG + chr1.3:78868650-78868669 MS.gene029093:CDS 50.0%
GGACATCCTCTCTCGATATG+GGG + chr1.3:78870991-78871010 MS.gene029093:CDS 50.0%
GGAGAAGTGGATCCAACTCA+TGG + chr1.3:78871632-78871651 MS.gene029093:CDS 50.0%
GTCAAAGGATGGCAGCTTGT+TGG + chr1.3:78869917-78869936 MS.gene029093:CDS 50.0%
GTGGAGTTTCCTCAGCTCTT+TGG - chr1.3:78871143-78871162 None:intergenic 50.0%
TAAGTGCCCCATATCGAGAG+AGG - chr1.3:78871000-78871019 None:intergenic 50.0%
TGGCAACACAGCATTGCATG+TGG + chr1.3:78870160-78870179 MS.gene029093:CDS 50.0%
TTGAGGGTCTTTGCTGAGCA+AGG - chr1.3:78870015-78870034 None:intergenic 50.0%
TTGCATTTAGCTGCTCGTCC+GGG + chr1.3:78869969-78869988 MS.gene029093:CDS 50.0%
! ATAAGTGGAGTGGCGTTGGA+TGG - chr1.3:78869852-78869871 None:intergenic 50.0%
! GTTGGCTTCTGTCTGTACCT+CGG + chr1.3:78871435-78871454 MS.gene029093:CDS 50.0%
! GTTTTCCTCAGTTCGTCCCT+TGG - chr1.3:78871043-78871062 None:intergenic 50.0%
! TCGGAAAGTGGGTTCTGTGT+TGG - chr1.3:78868569-78868588 None:intergenic 50.0%
! TGAGTTGGATCCACTTCTCC+TGG - chr1.3:78871632-78871651 None:intergenic 50.0%
!! GGGGATAACGATGATGGATC+AGG + chr1.3:78871256-78871275 MS.gene029093:CDS 50.0%
AAAAGGGCAGAGCTGTGACG+TGG + chr1.3:78870085-78870104 MS.gene029093:CDS 55.0%
AAGCAGCTAGCCAGGAGAAG+TGG + chr1.3:78871619-78871638 MS.gene029093:CDS 55.0%
ACCAACCAAGGGACGAACTG+AGG + chr1.3:78871035-78871054 MS.gene029093:CDS 55.0%
CACCACTGTCACCGAGTTTG+TGG - chr1.3:78871185-78871204 None:intergenic 55.0%
CAGCATTGCATGTGGCAACC+AGG + chr1.3:78870168-78870187 MS.gene029093:CDS 55.0%
CAGTCCTCCGAGCCAATTGA+GGG - chr1.3:78870031-78870050 None:intergenic 55.0%
CATACATAGTCGTCGGTCGG+AGG + chr1.3:78871476-78871495 MS.gene029093:CDS 55.0%
CCATCATCGTTATCCCCACC+AGG - chr1.3:78871253-78871272 None:intergenic 55.0%
CCTGGTGGGGATAACGATGA+TGG + chr1.3:78871250-78871269 MS.gene029093:CDS 55.0%
CTGAGGAAACTCCACAGGGA+AGG + chr1.3:78871148-78871167 MS.gene029093:CDS 55.0%
GCTCGGAGGACTGACAAGAA+AGG + chr1.3:78870038-78870057 MS.gene029093:CDS 55.0%
TCAGTCCTCCGAGCCAATTG+AGG - chr1.3:78870032-78870051 None:intergenic 55.0%
TCCTCAGTTCGTCCCTTGGT+TGG - chr1.3:78871039-78871058 None:intergenic 55.0%
! CACAAACTCGGTGACAGTGG+TGG + chr1.3:78871183-78871202 MS.gene029093:CDS 55.0%
! TGCCACAAACTCGGTGACAG+TGG + chr1.3:78871180-78871199 MS.gene029093:CDS 55.0%
!! AAGACCCTCAATTGGCTCGG+AGG + chr1.3:78870024-78870043 MS.gene029093:CDS 55.0%
!! GAACGAGTGGGCTGCAATTC+TGG + chr1.3:78871498-78871517 MS.gene029093:CDS 55.0%
GGCTTCTGTCTGTACCTCGG+TGG + chr1.3:78871438-78871457 MS.gene029093:CDS 60.0%
CGTCGGTCGGAGGAACGAGT+GGG + chr1.3:78871486-78871505 MS.gene029093:CDS 65.0%
TCGTCGGTCGGAGGAACGAG+TGG + chr1.3:78871485-78871504 MS.gene029093:CDS 65.0%
! GACGAGAGGGCACGTCGAAG+TGG + chr1.3:78869881-78869900 MS.gene029093:CDS 65.0%
GCCATCTCCGTCGTCCGCGA+CGG + chr1.3:78868601-78868620 MS.gene029093:CDS 70.0%
GCGGACGACGGAGATGGCGA+CGG - chr1.3:78868599-78868618 None:intergenic 70.0%
GACTAGAGCCGGCGCCGTCG+CGG - chr1.3:78868618-78868637 None:intergenic 75.0%
GCCGTCGCGGACGACGGAGA+TGG - chr1.3:78868605-78868624 None:intergenic 75.0%
! TCCGTCGTCCGCGACGGCGC+CGG + chr1.3:78868607-78868626 MS.gene029093:CDS 80.0%
! GCCGGCGCCGTCGCGGACGA+CGG - chr1.3:78868611-78868630 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 78868391 78871705 78868391 ID=MS.gene029093
chr1.3 mRNA 78868391 78871705 78868391 ID=MS.gene029093.t1;Parent=MS.gene029093
chr1.3 exon 78868391 78868415 78868391 ID=MS.gene029093.t1.exon1;Parent=MS.gene029093.t1
chr1.3 CDS 78868391 78868415 78868391 ID=cds.MS.gene029093.t1;Parent=MS.gene029093.t1
chr1.3 exon 78868519 78869031 78868519 ID=MS.gene029093.t1.exon2;Parent=MS.gene029093.t1
chr1.3 CDS 78868519 78869031 78868519 ID=cds.MS.gene029093.t1;Parent=MS.gene029093.t1
chr1.3 exon 78869796 78870205 78869796 ID=MS.gene029093.t1.exon3;Parent=MS.gene029093.t1
chr1.3 CDS 78869796 78870205 78869796 ID=cds.MS.gene029093.t1;Parent=MS.gene029093.t1
chr1.3 exon 78870872 78871705 78870872 ID=MS.gene029093.t1.exon4;Parent=MS.gene029093.t1
chr1.3 CDS 78870872 78871705 78870872 ID=cds.MS.gene029093.t1;Parent=MS.gene029093.t1
Gene Sequence

>MS.gene029093

ATGACCTCCAATTTCAACCTTCCAGGTTGGTTCTTCTTCTATCTGCACCCCCATCTTTTTACTTCACTGTAAACTGTAAATTTTACAGTTTTTTTTTTTTTTTTACTACGCTTTTACGTTTATTGCAGGTGGAGCTCAAACTCAAAGAGATTCAGAAAAAGGAACGATGATGACACCAACACAGAACCCACTTTCCGAAATATCTCCGTCGCCATCTCCGTCGTCCGCGACGGCGCCGGCTCTAGTCCTTTCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAGTACGTGAAGCAAGTAACGGGTCGTCACAACGATACAGAGCTTCATCTAGCAGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTCCTTGATATTGATTCTCAAATAATGGGTACTTTGAGTGGTGATGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTGAATGAAGAGAATGAGCTTGGTGAAACTGCTTTGTTTACTGCTGCTGAAAAGGGTCATCTTGATGTTGTTAAGGAGTTGTTGAAACATTCAACTCTTCAAACTGTTTCTAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGACATCATGGTATGACTTCTTGTATTCAATGTCTTGTCAGATGTTCTGTTTTTATTACCTTTTTCCTTTGTTTTGATGTTGGGATTTTGGAAATTTCATTATTTTGCTTTTTGTAAAAATGGGTGAGAAAAATTTATTTTGAATGAATTGACTTTGGCTAAAATTGAGTTGAAGGTAAAACGATTTATGTTTGGGTACATTCATCTAAGCGAGTTGAACAATAAATTTGAGTTCAAAAATCAATTCTAGAATAAGAAGCTACAATTTCTAGCTTCAAGTAGAATCAGTTATGGAGACAAAATCAGGATGTTTGAGTGAGTTTTGTATTTTTTTTTTTTGGAACATATTCTTGGTTTCAACTTTAGTAGAAGAACCTTTCAAAAAAAAAAAAAAAAAAAAACTTTAGTAGAAGAACACCAGAAGTATATCTGATTAAATTTGTAATTTATTAAGTTATGAGCTGACTATTGAGTATTTATCTTGCTTAAGGTATCCAATGAAGAAACTCAATTATGATGCTATTAATGGACTTTTTTTTAATAAGCTATTAATGGAAATTTTAAGAGAAATGTTATGACACGAGTTTTAATATTATTAATCCGTAGTAGAGTTAATGCTATGTAGACAAGTCTGCCAAACATCAATGTTGTCTTATTTGGATTCCAATTGTTAGACCTTGAGTAGCTTCAATTTGTGGGTTATGGTGTTCTTGAAAATGTGAGTACTTTGCCTTCTGTTCTTTGCAGTAATCTGTTGTGAATTTTCATTTGCAGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGCTTAAGCAAAACTATTGGTCCATCCAACGCCACTCCACTTATAACAGCAGCGACGAGAGGGCACGTCGAAGTGGTGAATGAACTTCTGTCAAAGGATGGCAGCTTGTTGGAAATTGCAAGATCCAATGGAAAAAATGCTTTGCATTTAGCTGCTCGTCCGGGCCATACAGAAATCGTGAAAGCCTTGCTCAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGCTGTGACGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGCAACACAGCATTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGGTATGTAACATTAGCACAGCATTACAAGCAGTCAAGCACCATACAGTACATACAGTGATGAAGTAAAACAAATTAACTTACTCGAACAAATCGGGCTCACTTGACATAGCTAAATATGCCATATTTGTAGTAGTAGTATTAGTTATAGAATGATTAACAAGTCTCCAATATTGAAAACAGGTAGCTAATTATGCTACAAAAAATGCAAACGAGGCTGCTAATTTGTTATTATATTTTATATTCTCTTTGTCTCATATTATGTGTCTCATAATTCATTTGAATTTTTGTCTCAAATTATTTGTCATTTTATAATATCAATACAATATTTATTACTTTTTTCAAAAGTTACCTTTATTTATTTAAGTAGTTGCAAGTATAAGGTGGACAAATAATAAATGAAGTACAATGATATTTTAGTCTCAACATGTTATTTTGCTTTGAAAATTGGTATAAGTAAACCATTTTTTTAAGTAGTGTGCACATTACTAATGAAACATGTTATATGAGACAAGGGATGTAACTTCAATTTTGTCTAGAAGTTTTGGGCCTCTTGTTTTCTTTTAATTTTTATACATGAAAAACACTTGTTCCCCTAGTTACTTTTGAGCATGTCATTGTTCCTTGAATGAAAAATCTAATATTGTTGTTTCTCAATTTCTTGGACAGATAGTGAATGAGTTGTTACTCCTGCCAGACACAAACGTAAATGCATTAACACGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCTCTCTCTGAAGAGTCATCAGATATAAAGGACATCCTCTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACGGTTACACAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAAGAGAACCAACAAAAATGTCCACAATATATCCAAAGAGCTGAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCGGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTACCTGGTGGGGATAACGATGATGGATCAGGAGTGGTAGCGAGTTATTCTGCTTTTAAAATTTTCTTCATATTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTTGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTTGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTCTGTACCTCGGTGGCATTTATTGCCTCTTCATACATAGTCGTCGGTCGGAGGAACGAGTGGGCTGCAATTCTGGTTACAGTTGTTGGAGGAGTGATAATATCCGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAACAAGATCCATGAGGAAGAAAGAGAAGCAGCTAGCCAGGAGAAGTGGATCCAACTCATGGCATCATTCAGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTCTAA

Protein sequence

>MS.gene029093.t1

MTSNFNLPGGAQTQRDSEKGTMMTPTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTLSGDDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHTEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDIAENLPLSEESSDIKDILSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVASYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRTRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL