Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001210.t1 | XP_003601587.2 | 95 | 913 | 41 | 2 | 1 | 912 | 1 | 909 | 0.00E+00 | 1718.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001210.t1 | Q6YSJ5 | 62.2 | 879 | 309 | 10 | 40 | 912 | 22 | 883 | 0.0e+00 | 1088.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001210.t1 | G7J9J9 | 95.0 | 913 | 41 | 2 | 1 | 912 | 1 | 909 | 0.0e+00 | 1718.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene37822 | MS.gene001210 | PPI |
MS.gene39813 | MS.gene001210 | PPI |
MS.gene001210 | MS.gene074399 | PPI |
MS.gene001210 | MS.gene016870 | PPI |
MS.gene001210 | MS.gene016866 | PPI |
MS.gene99383 | MS.gene001210 | PPI |
MS.gene99379 | MS.gene001210 | PPI |
MS.gene70580 | MS.gene001210 | PPI |
MS.gene001210 | MS.gene39809 | PPI |
MS.gene25906 | MS.gene001210 | PPI |
MS.gene001210 | MS.gene022250 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001210.t1 | MTR_3g083300 | 94.962 | 913 | 41 | 2 | 1 | 912 | 1 | 909 | 0.0 | 1712 |
MS.gene001210.t1 | MTR_5g087870 | 60.045 | 886 | 333 | 7 | 34 | 911 | 75 | 947 | 0.0 | 1071 |
MS.gene001210.t1 | MTR_3g078647 | 58.134 | 879 | 344 | 7 | 40 | 911 | 61 | 922 | 0.0 | 1041 |
MS.gene001210.t1 | MTR_5g087870 | 58.126 | 886 | 328 | 7 | 34 | 911 | 75 | 925 | 0.0 | 1026 |
MS.gene001210.t1 | MTR_5g087890 | 58.200 | 878 | 346 | 9 | 34 | 911 | 35 | 891 | 0.0 | 1015 |
MS.gene001210.t1 | MTR_6g043180 | 57.955 | 880 | 345 | 8 | 40 | 911 | 40 | 902 | 0.0 | 1014 |
MS.gene001210.t1 | MTR_3g010650 | 53.295 | 880 | 380 | 13 | 40 | 912 | 21 | 876 | 0.0 | 919 |
MS.gene001210.t1 | MTR_6g477980 | 36.057 | 918 | 491 | 25 | 42 | 912 | 241 | 1109 | 5.54e-159 | 495 |
MS.gene001210.t1 | MTR_6g477980 | 36.057 | 918 | 491 | 25 | 42 | 912 | 247 | 1115 | 8.60e-159 | 495 |
MS.gene001210.t1 | MTR_1g041345 | 35.931 | 924 | 495 | 30 | 31 | 912 | 111 | 979 | 4.09e-155 | 481 |
MS.gene001210.t1 | MTR_2g059590 | 35.826 | 896 | 504 | 23 | 42 | 912 | 54 | 903 | 1.27e-154 | 478 |
MS.gene001210.t1 | MTR_1g102630 | 35.173 | 924 | 506 | 27 | 31 | 912 | 106 | 978 | 8.65e-153 | 475 |
MS.gene001210.t1 | MTR_4g113200 | 36.071 | 901 | 497 | 27 | 41 | 912 | 26 | 876 | 4.47e-152 | 470 |
MS.gene001210.t1 | MTR_4g056430 | 33.974 | 936 | 543 | 26 | 2 | 912 | 86 | 971 | 1.73e-146 | 459 |
MS.gene001210.t1 | MTR_4g056470 | 33.408 | 895 | 527 | 21 | 42 | 912 | 159 | 1008 | 8.80e-141 | 444 |
MS.gene001210.t1 | MTR_5g042590 | 31.528 | 923 | 532 | 29 | 35 | 912 | 149 | 1016 | 1.47e-119 | 389 |
MS.gene001210.t1 | MTR_2g059790 | 38.409 | 591 | 334 | 12 | 340 | 912 | 16 | 594 | 4.10e-118 | 372 |
MS.gene001210.t1 | MTR_2g059590 | 33.183 | 663 | 388 | 18 | 42 | 687 | 54 | 678 | 2.55e-93 | 310 |
MS.gene001210.t1 | MTR_4g083610 | 30.025 | 796 | 460 | 25 | 112 | 874 | 194 | 925 | 1.06e-83 | 290 |
MS.gene001210.t1 | MTR_2g028910 | 26.986 | 982 | 548 | 38 | 3 | 911 | 143 | 1028 | 2.93e-78 | 275 |
MS.gene001210.t1 | MTR_3g101730 | 32.402 | 179 | 72 | 5 | 639 | 813 | 39 | 172 | 1.00e-17 | 82.4 |
MS.gene001210.t1 | MTR_7g107230 | 43.750 | 96 | 40 | 1 | 479 | 574 | 140 | 221 | 4.84e-16 | 79.3 |
MS.gene001210.t1 | MTR_6g037320 | 47.297 | 74 | 39 | 0 | 594 | 667 | 1 | 74 | 5.14e-15 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001210.t1 | AT2G32940 | 62.144 | 877 | 309 | 8 | 37 | 912 | 24 | 878 | 0.0 | 1068 |
MS.gene001210.t1 | AT2G27040 | 56.292 | 890 | 364 | 8 | 31 | 912 | 52 | 924 | 0.0 | 1008 |
MS.gene001210.t1 | AT2G27040 | 56.292 | 890 | 364 | 8 | 31 | 912 | 52 | 924 | 0.0 | 1008 |
MS.gene001210.t1 | AT5G21150 | 56.831 | 871 | 354 | 8 | 46 | 912 | 44 | 896 | 0.0 | 1004 |
MS.gene001210.t1 | AT5G21030 | 50.834 | 899 | 374 | 16 | 27 | 912 | 11 | 854 | 0.0 | 862 |
MS.gene001210.t1 | AT5G21030 | 50.834 | 899 | 370 | 17 | 27 | 912 | 11 | 850 | 0.0 | 856 |
MS.gene001210.t1 | AT1G48410 | 36.383 | 929 | 471 | 27 | 42 | 912 | 182 | 1048 | 5.97e-157 | 488 |
MS.gene001210.t1 | AT1G48410 | 36.344 | 930 | 472 | 27 | 42 | 912 | 182 | 1050 | 9.99e-157 | 488 |
MS.gene001210.t1 | AT1G48410 | 36.344 | 930 | 472 | 27 | 42 | 912 | 182 | 1050 | 9.99e-157 | 488 |
MS.gene001210.t1 | AT5G43810 | 35.038 | 919 | 488 | 28 | 42 | 912 | 131 | 988 | 4.40e-150 | 469 |
MS.gene001210.t1 | AT5G43810 | 35.038 | 919 | 488 | 28 | 42 | 912 | 131 | 988 | 4.40e-150 | 469 |
MS.gene001210.t1 | AT5G43810 | 35.038 | 919 | 488 | 28 | 42 | 912 | 131 | 988 | 4.40e-150 | 469 |
MS.gene001210.t1 | AT5G43810 | 35.038 | 919 | 488 | 28 | 42 | 912 | 131 | 988 | 4.40e-150 | 469 |
MS.gene001210.t1 | AT2G27880 | 35.470 | 905 | 485 | 29 | 46 | 912 | 154 | 997 | 4.48e-144 | 453 |
MS.gene001210.t1 | AT1G69440 | 32.119 | 906 | 503 | 27 | 46 | 912 | 158 | 990 | 1.32e-114 | 375 |
MS.gene001210.t1 | AT1G31290 | 30.814 | 860 | 493 | 27 | 52 | 874 | 275 | 1069 | 2.48e-92 | 317 |
MS.gene001210.t1 | AT1G31290 | 30.814 | 860 | 493 | 27 | 52 | 874 | 313 | 1107 | 3.71e-92 | 317 |
MS.gene001210.t1 | AT1G31290 | 30.814 | 860 | 493 | 27 | 52 | 874 | 349 | 1143 | 4.42e-92 | 317 |
MS.gene001210.t1 | AT1G31280 | 29.477 | 899 | 499 | 34 | 23 | 874 | 153 | 963 | 5.87e-91 | 311 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCAAGAATTCAAAATTTA+TGG | 0.067326 | 3.1:+65976772 | MS.gene001210:CDS |
TCCATTGTTCTTTCCCTTAA+AGG | 0.138733 | 3.1:+65976106 | MS.gene001210:CDS |
CATATGACTCGATCCCTTTA+AGG | 0.150762 | 3.1:-65976120 | None:intergenic |
AAAATTCCACCTTCCATTAT+TGG | 0.181963 | 3.1:-65977734 | None:intergenic |
AATGGACTGCAAGGGTATTT+TGG | 0.214443 | 3.1:-65976089 | None:intergenic |
TTGCTGTCATCTAAACTTAA+TGG | 0.226920 | 3.1:+65978172 | MS.gene001210:CDS |
TTACAGGCTATTGGAAATTC+TGG | 0.231778 | 3.1:+65977443 | MS.gene001210:intron |
GGGAGGATTGTCTCTTAATA+TGG | 0.249429 | 3.1:+65976439 | MS.gene001210:CDS |
AAATTCCACCTTCCATTATT+GGG | 0.252986 | 3.1:-65977733 | None:intergenic |
AGCCATCAGATATTGGTTAT+TGG | 0.253396 | 3.1:+65977885 | MS.gene001210:CDS |
ACATACATTATACTGGAAAA+AGG | 0.260122 | 3.1:-65975616 | None:intergenic |
TGCACACAACCTTTATTATC+TGG | 0.271589 | 3.1:-65981645 | None:intergenic |
AACCTCATCAATATGTTTAT+AGG | 0.277854 | 3.1:-65981796 | None:intergenic |
CATTAAGATTTACAGGCTAT+TGG | 0.284179 | 3.1:+65977434 | MS.gene001210:intron |
TTGAACTCAAATTTATTATC+TGG | 0.285094 | 3.1:-65975852 | None:intergenic |
TCAGGAGAAAACTGATTAAT+AGG | 0.290755 | 3.1:+65975745 | MS.gene001210:CDS |
TCCTCCTCTAATAAAGTAAA+TGG | 0.290968 | 3.1:-65978097 | None:intergenic |
CAACTCAAATTATTCTCTTC+AGG | 0.295576 | 3.1:+65980852 | MS.gene001210:CDS |
AAGAGCTTCCAAAGTTGAAT+TGG | 0.314384 | 3.1:+65982629 | MS.gene001210:CDS |
CTTTGTAAATTTCAGGGCCT+TGG | 0.317902 | 3.1:+65978325 | MS.gene001210:intron |
TTGCTGGCAATAGAGCATTC+TGG | 0.317928 | 3.1:+65978589 | MS.gene001210:CDS |
GCCATCAGATATTGGTTATT+GGG | 0.320162 | 3.1:+65977886 | MS.gene001210:CDS |
CCATTGTTCTTTCCCTTAAA+GGG | 0.323956 | 3.1:+65976107 | MS.gene001210:CDS |
ACTTCTTAAAATCAATTCTA+AGG | 0.326188 | 3.1:+65978431 | MS.gene001210:CDS |
CTTCTACAGCCATCAGATAT+TGG | 0.328425 | 3.1:+65977878 | MS.gene001210:CDS |
TCCCTGTGTAAGACGAAAAC+TGG | 0.331692 | 3.1:-65976420 | None:intergenic |
GAAGACTGCTTCCCCAATAA+TGG | 0.339425 | 3.1:+65977721 | MS.gene001210:CDS |
TTTAGCAAAATATTCATATA+CGG | 0.341239 | 3.1:-65977006 | None:intergenic |
CACGTGTTGCTTGATGAAAT+TGG | 0.343499 | 3.1:+65982247 | MS.gene001210:CDS |
TGCTGGCAATAGAGCATTCT+GGG | 0.347508 | 3.1:+65978590 | MS.gene001210:CDS |
GAATAGGTTGGGAGAGCTAT+TGG | 0.351022 | 3.1:-65975501 | None:intergenic |
TCCTGATGTGCTGTCTAGTA+TGG | 0.352618 | 3.1:+65975470 | MS.gene001210:CDS |
ATGTAGAAATCGTAATTTCT+TGG | 0.356720 | 3.1:-65982015 | None:intergenic |
CAAAGTTGAATTGGAATGTC+AGG | 0.363699 | 3.1:+65982638 | MS.gene001210:CDS |
AAAAGGATGATGGTATTATC+AGG | 0.373300 | 3.1:+65978977 | MS.gene001210:CDS |
CAACTTTGGAAGCTCTTGAA+TGG | 0.375153 | 3.1:-65982623 | None:intergenic |
ACTTTCCATGTCTTGATGTT+GGG | 0.375386 | 3.1:+65977060 | MS.gene001210:CDS |
ATCTCCACTGTGAATGTCTT+TGG | 0.377896 | 3.1:-65976055 | None:intergenic |
GCTCTATATCTCGAAATTAG+AGG | 0.379869 | 3.1:-65978865 | None:intergenic |
GCCCTCGCGAGGAAAATAAA+AGG | 0.383421 | 3.1:+65976014 | MS.gene001210:CDS |
GATAGGAGAAAATCAATTAC+AGG | 0.385642 | 3.1:-65976582 | None:intergenic |
AACTTTGGAAGCTCTTGAAT+GGG | 0.386107 | 3.1:-65982622 | None:intergenic |
AGCCTTACAGCAGCTGTTGA+TGG | 0.387959 | 3.1:-65978694 | None:intergenic |
TGGAGGAATAAATTCTTTGC+TGG | 0.397191 | 3.1:+65978573 | MS.gene001210:CDS |
TCACTTGACATACATTATAC+TGG | 0.400607 | 3.1:-65975623 | None:intergenic |
GCGGCCATTTACTTTATTAG+AGG | 0.401735 | 3.1:+65978093 | MS.gene001210:CDS |
AGGTTGCAGCTGTGCTCCTC+TGG | 0.405009 | 3.1:-65982404 | None:intergenic |
TACTTTCCATGTCTTGATGT+TGG | 0.405546 | 3.1:+65977059 | MS.gene001210:CDS |
GGGATGTTTCCCTCTGAATC+AGG | 0.405805 | 3.1:-65982601 | None:intergenic |
TCAAGAACTCTTCCTTCAAC+TGG | 0.410088 | 3.1:-65977524 | None:intergenic |
CCATCCCTAAAATCATCGTT+GGG | 0.410555 | 3.1:-65978636 | None:intergenic |
ATATGACTCGATCCCTTTAA+GGG | 0.411344 | 3.1:-65976119 | None:intergenic |
AGCAGCAGTACTGAGAGTTT+TGG | 0.411522 | 3.1:+65975980 | MS.gene001210:intron |
CTGACATTCCAATTCAACTT+TGG | 0.412092 | 3.1:-65982637 | None:intergenic |
CACTTACAGTTGTTGAATGC+AGG | 0.412851 | 3.1:-65976809 | None:intergenic |
CTGTTGAAAGCAAGGGCATC+AGG | 0.419930 | 3.1:+65975727 | MS.gene001210:CDS |
AGGCGGAGTAGAAGGAGTTC+GGG | 0.420984 | 3.1:+65976388 | MS.gene001210:CDS |
TGGTGAATCTCAATTTCAAC+AGG | 0.422456 | 3.1:+65981603 | MS.gene001210:CDS |
TGCCACAATTACAGTGAACT+TGG | 0.423102 | 3.1:-65981835 | None:intergenic |
TTATGTTGGATTTAGGTTGT+TGG | 0.423726 | 3.1:+65978829 | MS.gene001210:intron |
CAAGTTCAGAAGAGTATGTT+TGG | 0.425625 | 3.1:-65975773 | None:intergenic |
CGTTGGGGTATCTTTAATCA+AGG | 0.429944 | 3.1:-65978620 | None:intergenic |
TAGCTTGAAACAGCTTTGTA+TGG | 0.436156 | 3.1:-65981869 | None:intergenic |
AGCACAGCTGCAACCTCAAT+TGG | 0.437891 | 3.1:+65982411 | MS.gene001210:CDS |
CAGCCTACTGATAATAGAAT+AGG | 0.438878 | 3.1:-65975517 | None:intergenic |
CAAACATACTCTTCTGAACT+TGG | 0.446873 | 3.1:+65975774 | MS.gene001210:CDS |
AGGAAGTGTCTGAGTGATGT+TGG | 0.447585 | 3.1:+65978351 | MS.gene001210:CDS |
AGAGCTTAACCAGATAATAA+AGG | 0.448697 | 3.1:+65981636 | MS.gene001210:CDS |
GCATGGTGGGCATAGTATAT+AGG | 0.450067 | 3.1:-65982520 | None:intergenic |
TGAGGCAGCGAGCAGCTAAC+AGG | 0.452726 | 3.1:+65976182 | MS.gene001210:CDS |
AGAAAATCAATTACAGGTCC+AGG | 0.458109 | 3.1:-65976576 | None:intergenic |
GGAAGTGTCTGAGTGATGTT+GGG | 0.461376 | 3.1:+65978352 | MS.gene001210:CDS |
TACTGATAATAGAATAGGTT+GGG | 0.462123 | 3.1:-65975512 | None:intergenic |
AGGTTGTTGGATCTCGATGC+TGG | 0.463185 | 3.1:+65978842 | MS.gene001210:intron |
GAGGCGGAGTAGAAGGAGTT+CGG | 0.465739 | 3.1:+65976387 | MS.gene001210:CDS |
TTCTGATGGCGTACCAATTG+AGG | 0.467308 | 3.1:-65982424 | None:intergenic |
GAATAATTTGAGTTGGTTTG+CGG | 0.468297 | 3.1:-65980844 | None:intergenic |
GAATCAATCATCTCCACCTT+AGG | 0.471437 | 3.1:-65978907 | None:intergenic |
GGGAACCTCGTTATATTGAC+TGG | 0.475105 | 3.1:+65976619 | MS.gene001210:CDS |
AGGAATTTCATCGATGTTGG+AGG | 0.476725 | 3.1:+65976368 | MS.gene001210:CDS |
TAATTCTCAGGATGCATTGA+GGG | 0.477606 | 3.1:+65976144 | MS.gene001210:CDS |
TCGAGGAATTTCATCGATGT+TGG | 0.477614 | 3.1:+65976365 | MS.gene001210:CDS |
TTTCCCTCTGAATCAGGACT+TGG | 0.478734 | 3.1:-65982595 | None:intergenic |
TTGATGTTGGGAAGCCAAAT+CGG | 0.480224 | 3.1:+65977072 | MS.gene001210:CDS |
CATTTGAGCTGCAGCATGGT+GGG | 0.481186 | 3.1:-65982533 | None:intergenic |
TTCTACATGTGTGCTCATGC+TGG | 0.485331 | 3.1:+65982030 | MS.gene001210:CDS |
AGGCTGAGTGTCGGGACCAC+AGG | 0.487528 | 3.1:+65975534 | MS.gene001210:CDS |
GATGTTGGAGGCGGAGTAGA+AGG | 0.490244 | 3.1:+65976380 | MS.gene001210:CDS |
TCCACAGCTTCTTCAAAGTC+AGG | 0.492479 | 3.1:-65975423 | None:intergenic |
AAATTTCAGGGCCTTGGAAA+AGG | 0.493150 | 3.1:+65978331 | MS.gene001210:intron |
TTAGGGATGGATGTCTCTCA+TGG | 0.493402 | 3.1:+65978649 | MS.gene001210:CDS |
CGAGTCATATGCTAATTCTC+AGG | 0.493752 | 3.1:+65976132 | MS.gene001210:CDS |
GATGTCTCTCATGGTTCCCC+TGG | 0.494710 | 3.1:+65978658 | MS.gene001210:CDS |
TCCATACTAGACAGCACATC+AGG | 0.495360 | 3.1:-65975471 | None:intergenic |
AAGCAATTCACTCCAGTTGA+AGG | 0.497118 | 3.1:+65977512 | MS.gene001210:CDS |
CTAGATTTCTATAGTTCAAG+TGG | 0.501992 | 3.1:+65980818 | MS.gene001210:CDS |
CTGAAGAGAATAATTTGAGT+TGG | 0.507739 | 3.1:-65980851 | None:intergenic |
TCAAATTTATTATCTGGAAG+AGG | 0.508444 | 3.1:-65975846 | None:intergenic |
GCTGTTTCAAGCTAATGCTC+TGG | 0.511577 | 3.1:+65981878 | MS.gene001210:CDS |
TCCATCCCTAAAATCATCGT+TGG | 0.515662 | 3.1:-65978637 | None:intergenic |
ACTAAAGATGCTCTTTGCAC+AGG | 0.518323 | 3.1:-65977299 | None:intergenic |
ATATTCTTATTACAGCTTGG+AGG | 0.519143 | 3.1:+65978556 | MS.gene001210:intron |
TAAAAGAACTGTTGAAAGCA+AGG | 0.519488 | 3.1:+65975719 | MS.gene001210:CDS |
AACGAGGTTCCCTCACACTC+TGG | 0.519744 | 3.1:-65976608 | None:intergenic |
GGAGGATTGTCTCTTAATAT+GGG | 0.521120 | 3.1:+65976440 | MS.gene001210:CDS |
TTATCAGTAGGCTGAGTGTC+GGG | 0.522170 | 3.1:+65975526 | MS.gene001210:CDS |
GCCATTTACTTTATTAGAGG+AGG | 0.522401 | 3.1:+65978096 | MS.gene001210:CDS |
GAAAATTTAACCCTGTTGCA+AGG | 0.523968 | 3.1:+65978131 | MS.gene001210:CDS |
GGAGGTGATGGAGGTAAAGC+TGG | 0.527652 | 3.1:-65975450 | None:intergenic |
CGTGGAAAGAGGGTGTCTCT+TGG | 0.527878 | 3.1:+65976316 | MS.gene001210:intron |
ACACAAAGAATCAACTTTGG+TGG | 0.530353 | 3.1:-65978196 | None:intergenic |
ATGTGGAATGAGCAAGGGAA+TGG | 0.530588 | 3.1:+65977967 | MS.gene001210:CDS |
CCCTCACACTCTGGTTGGAT+AGG | 0.531323 | 3.1:-65976599 | None:intergenic |
AAAATTTAACCCTGTTGCAA+GGG | 0.534798 | 3.1:+65978132 | MS.gene001210:CDS |
TTCTTGTTCAGGGATGGAGT+TGG | 0.535856 | 3.1:+65981583 | MS.gene001210:intron |
ATGGAATATCTGATCGGCCA+GGG | 0.537320 | 3.1:-65978675 | None:intergenic |
TGTAAGATCACAGTCTCCTA+AGG | 0.538809 | 3.1:+65978891 | MS.gene001210:CDS |
GCATCATTCATCTTATCCAC+AGG | 0.540020 | 3.1:-65978940 | None:intergenic |
AATTTCATCGATGTTGGAGG+CGG | 0.540242 | 3.1:+65976371 | MS.gene001210:CDS |
TCCCAAGTTCACTGTAATTG+TGG | 0.549617 | 3.1:+65981833 | MS.gene001210:CDS |
GGAAAGAACAATGGACTGCA+AGG | 0.550385 | 3.1:-65976098 | None:intergenic |
ATAATGCCTTTGTATACCGC+TGG | 0.550641 | 3.1:-65977274 | None:intergenic |
ACTTACAGTTGTTGAATGCA+GGG | 0.551345 | 3.1:-65976808 | None:intergenic |
ACATGGAAAGTAAGCAGAAG+AGG | 0.552059 | 3.1:-65977048 | None:intergenic |
GATGGAATATCTGATCGGCC+AGG | 0.555026 | 3.1:-65978676 | None:intergenic |
AAAGAGGGTGTCTCTTGGTA+AGG | 0.555122 | 3.1:+65976321 | MS.gene001210:intron |
GACAGCACATCAGGAGGTGA+TGG | 0.564571 | 3.1:-65975462 | None:intergenic |
TCCTATCCAACCAGAGTGTG+AGG | 0.566604 | 3.1:+65976598 | MS.gene001210:CDS |
AATTCCACCTTCCATTATTG+GGG | 0.568336 | 3.1:-65977732 | None:intergenic |
ATCTCCAAGTCCTGATTCAG+AGG | 0.568425 | 3.1:+65982591 | MS.gene001210:CDS |
CTAATTCTCAGGATGCATTG+AGG | 0.568737 | 3.1:+65976143 | MS.gene001210:CDS |
AAGACACAAAGAATCAACTT+TGG | 0.569909 | 3.1:-65978199 | None:intergenic |
TCATTTGAGCTGCAGCATGG+TGG | 0.570376 | 3.1:-65982534 | None:intergenic |
GGCAAAAGCTTTGCGTACGA+TGG | 0.570982 | 3.1:+65975798 | MS.gene001210:CDS |
CAACCTATTCTATTATCAGT+AGG | 0.570991 | 3.1:+65975514 | MS.gene001210:CDS |
GAAATTGGATTCTCACCAGA+TGG | 0.572088 | 3.1:+65982262 | MS.gene001210:CDS |
TCGTTATATTGACTGGGCAA+AGG | 0.573639 | 3.1:+65976626 | MS.gene001210:CDS |
GCCTTTGTATACCGCTGGAG+GGG | 0.575742 | 3.1:-65977269 | None:intergenic |
TGCCTTTGTATACCGCTGGA+GGG | 0.578738 | 3.1:-65977270 | None:intergenic |
AAAGGTTGCATCTGTAGCAT+CGG | 0.579610 | 3.1:-65975598 | None:intergenic |
TTCTTTGTGTCTTGCCAGAG+AGG | 0.579962 | 3.1:+65978209 | MS.gene001210:CDS |
GATTAGATGTGGAATGAGCA+AGG | 0.580659 | 3.1:+65977961 | MS.gene001210:CDS |
TGATTCTCTATTCAAGCCTG+TGG | 0.582586 | 3.1:+65978924 | MS.gene001210:CDS |
AGCTGCTCGCTGCCTCAGTA+CGG | 0.583868 | 3.1:-65976176 | None:intergenic |
AAAAGAACTGTTGAAAGCAA+GGG | 0.585910 | 3.1:+65975720 | MS.gene001210:CDS |
ACATACTCTTCTGAACTTGG+TGG | 0.585999 | 3.1:+65975777 | MS.gene001210:CDS |
AAAGTTGAATTGGAATGTCA+GGG | 0.586502 | 3.1:+65982639 | MS.gene001210:CDS |
GCTCTGGAAAACGTTCCTCC+TGG | 0.588624 | 3.1:+65981894 | MS.gene001210:CDS |
TTCTCATTTGAGCTGCAGCA+TGG | 0.590822 | 3.1:-65982537 | None:intergenic |
TATTGATCAGTGATCTTGAG+AGG | 0.590847 | 3.1:-65978396 | None:intergenic |
TTTGAGACACAGTTGAAGGT+AGG | 0.591550 | 3.1:+65977691 | MS.gene001210:intron |
ACCTGACTTTGAAGAAGCTG+TGG | 0.593647 | 3.1:+65975422 | MS.gene001210:CDS |
CCCTTTAAGGGAAAGAACAA+TGG | 0.596031 | 3.1:-65976107 | None:intergenic |
GTTCACTTGTTCCCCTCCAG+CGG | 0.598429 | 3.1:+65977258 | MS.gene001210:CDS |
GCCCAATAACCAATATCTGA+TGG | 0.600894 | 3.1:-65977887 | None:intergenic |
CTACTGATAATAGAATAGGT+TGG | 0.603547 | 3.1:-65975513 | None:intergenic |
AGCAACACGTGATAATGCAC+AGG | 0.603754 | 3.1:-65982235 | None:intergenic |
ATTGATCAGTGATCTTGAGA+GGG | 0.604848 | 3.1:-65978395 | None:intergenic |
ACAAGGGAGCTGATTAGATG+TGG | 0.605031 | 3.1:+65977950 | MS.gene001210:CDS |
ATTATCAGTAGGCTGAGTGT+CGG | 0.606927 | 3.1:+65975525 | MS.gene001210:CDS |
GTTGGGGTATCTTTAATCAA+GGG | 0.607083 | 3.1:-65978619 | None:intergenic |
ACTTTGGAAGCTCTTGAATG+GGG | 0.607139 | 3.1:-65982621 | None:intergenic |
TTCATATACGGTAATATCCA+CGG | 0.608023 | 3.1:-65976994 | None:intergenic |
AGGTTCCCTCACACTCTGGT+TGG | 0.610864 | 3.1:-65976604 | None:intergenic |
ACAACGACGATCATAAAACC+TGG | 0.611593 | 3.1:+65976558 | MS.gene001210:CDS |
AGCACATCAGGAGGTGATGG+AGG | 0.613682 | 3.1:-65975459 | None:intergenic |
ATTAAGTTTAGATGACAGCA+AGG | 0.615537 | 3.1:-65978170 | None:intergenic |
ATATATAATAGGGAACGTCT+AGG | 0.616244 | 3.1:+65982212 | MS.gene001210:intron |
AAGATCACAGTCTCCTAAGG+TGG | 0.617635 | 3.1:+65978894 | MS.gene001210:CDS |
ATGCCTTTGTATACCGCTGG+AGG | 0.619085 | 3.1:-65977271 | None:intergenic |
GGAACCTCGTTATATTGACT+GGG | 0.619345 | 3.1:+65976620 | MS.gene001210:CDS |
GTGGATAAGATGAATGATGC+TGG | 0.619986 | 3.1:+65978943 | MS.gene001210:CDS |
GTGATACTAGTTACATAACA+AGG | 0.620176 | 3.1:+65977933 | MS.gene001210:CDS |
TTCTTGAAGAAACATTTGCA+AGG | 0.623575 | 3.1:+65975880 | MS.gene001210:CDS |
GGCCTATAAACATATTGATG+AGG | 0.628880 | 3.1:+65981794 | MS.gene001210:intron |
GAAAGAACTTTGTACACAGT+GGG | 0.633260 | 3.1:+65975822 | MS.gene001210:CDS |
GCCACAATTACAGTGAACTT+GGG | 0.633960 | 3.1:-65981834 | None:intergenic |
AGAAAGAACTTTGTACACAG+TGG | 0.637549 | 3.1:+65975821 | MS.gene001210:CDS |
TGTGCTGTCTAGTATGGAAG+CGG | 0.638258 | 3.1:+65975476 | MS.gene001210:CDS |
GGCTTCCCAACATCAAGACA+TGG | 0.639701 | 3.1:-65977065 | None:intergenic |
CCTATCCAACCAGAGTGTGA+GGG | 0.641143 | 3.1:+65976599 | MS.gene001210:CDS |
GCTTCCCCAATAATGGAAGG+TGG | 0.642354 | 3.1:+65977728 | MS.gene001210:CDS |
AAGAGGTCAGCTCAATGCCA+CGG | 0.643931 | 3.1:-65977031 | None:intergenic |
GTCAATAGAAATACCACATG+CGG | 0.644333 | 3.1:-65977489 | None:intergenic |
TCCCCTCCAGCGGTATACAA+AGG | 0.644422 | 3.1:+65977268 | MS.gene001210:CDS |
GAAAGAACAATGGACTGCAA+GGG | 0.645951 | 3.1:-65976097 | None:intergenic |
ACTGCTTCCCCAATAATGGA+AGG | 0.646246 | 3.1:+65977725 | MS.gene001210:CDS |
TGGAATATCTGATCGGCCAG+GGG | 0.648815 | 3.1:-65978674 | None:intergenic |
TGCTAATGGAAGCCCTCGCG+AGG | 0.649571 | 3.1:+65976003 | MS.gene001210:CDS |
CAATAACTCGGAGCAGACCG+TGG | 0.649994 | 3.1:+65976977 | MS.gene001210:CDS |
ATTAGATGTGGAATGAGCAA+GGG | 0.654490 | 3.1:+65977962 | MS.gene001210:CDS |
CTGTTGATGGAATATCTGAT+CGG | 0.655109 | 3.1:-65978681 | None:intergenic |
GATGCTGTTCTTGCCGCATG+TGG | 0.655400 | 3.1:+65977476 | MS.gene001210:CDS |
TCTCCAAGTCCTGATTCAGA+GGG | 0.656047 | 3.1:+65982592 | MS.gene001210:CDS |
AGAATTCAACAAACCTCCAG+AGG | 0.657878 | 3.1:-65977107 | None:intergenic |
GGTGATGGAGGTAAAGCTGG+TGG | 0.663403 | 3.1:-65975447 | None:intergenic |
CATCCCTAAAATCATCGTTG+GGG | 0.665242 | 3.1:-65978635 | None:intergenic |
AAATGGAGAAGACAATAACT+CGG | 0.665330 | 3.1:+65976965 | MS.gene001210:CDS |
TTGATCAGTGATCTTGAGAG+GGG | 0.679194 | 3.1:-65978394 | None:intergenic |
AGTATTTACAGAATATTGAG+CGG | 0.680400 | 3.1:+65978074 | MS.gene001210:intron |
TGATACTAGTTACATAACAA+GGG | 0.689799 | 3.1:+65977934 | MS.gene001210:CDS |
ATACTAGACAGCACATCAGG+AGG | 0.702332 | 3.1:-65975468 | None:intergenic |
GAAGTGTCTGAGTGATGTTG+GGG | 0.703380 | 3.1:+65978353 | MS.gene001210:CDS |
GGGTTCTTGATACCGTACTG+AGG | 0.710755 | 3.1:+65976164 | MS.gene001210:CDS |
GGCGGAGTAGAAGGAGTTCG+GGG | 0.726067 | 3.1:+65976389 | MS.gene001210:CDS |
TCAGCCAAAGACATTCACAG+TGG | 0.739071 | 3.1:+65976051 | MS.gene001210:CDS |
TTTGCCCAGTCAATATAACG+AGG | 0.751855 | 3.1:-65976624 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 65975411 | 65982681 | 65975411 | ID=MS.gene001210 |
chr3.1 | mRNA | 65975411 | 65982681 | 65975411 | ID=MS.gene001210.t1;Parent=MS.gene001210 |
chr3.1 | exon | 65975411 | 65975632 | 65975411 | ID=MS.gene001210.t1.exon1;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65975411 | 65975632 | 65975411 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65975699 | 65975901 | 65975699 | ID=MS.gene001210.t1.exon2;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65975699 | 65975901 | 65975699 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65975985 | 65976203 | 65975985 | ID=MS.gene001210.t1.exon3;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65975985 | 65976203 | 65975985 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65976325 | 65976461 | 65976325 | ID=MS.gene001210.t1.exon4;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65976325 | 65976461 | 65976325 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65976550 | 65976647 | 65976550 | ID=MS.gene001210.t1.exon5;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65976550 | 65976647 | 65976550 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65976727 | 65976824 | 65976727 | ID=MS.gene001210.t1.exon6;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65976727 | 65976824 | 65976727 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65976947 | 65977115 | 65976947 | ID=MS.gene001210.t1.exon7;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65976947 | 65977115 | 65976947 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65977254 | 65977370 | 65977254 | ID=MS.gene001210.t1.exon8;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65977254 | 65977370 | 65977254 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65977449 | 65977556 | 65977449 | ID=MS.gene001210.t1.exon9;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65977449 | 65977556 | 65977449 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65977703 | 65977765 | 65977703 | ID=MS.gene001210.t1.exon10;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65977703 | 65977765 | 65977703 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65977875 | 65977988 | 65977875 | ID=MS.gene001210.t1.exon11;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65977875 | 65977988 | 65977875 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65978085 | 65978250 | 65978085 | ID=MS.gene001210.t1.exon12;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65978085 | 65978250 | 65978085 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65978340 | 65978452 | 65978340 | ID=MS.gene001210.t1.exon13;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65978340 | 65978452 | 65978340 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65978571 | 65978708 | 65978571 | ID=MS.gene001210.t1.exon14;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65978571 | 65978708 | 65978571 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65978844 | 65978998 | 65978844 | ID=MS.gene001210.t1.exon15;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65978844 | 65978998 | 65978844 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65980808 | 65980873 | 65980808 | ID=MS.gene001210.t1.exon16;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65980808 | 65980873 | 65980808 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65981594 | 65981657 | 65981594 | ID=MS.gene001210.t1.exon17;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65981594 | 65981657 | 65981594 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65981795 | 65981915 | 65981795 | ID=MS.gene001210.t1.exon18;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65981795 | 65981915 | 65981795 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65981986 | 65982059 | 65981986 | ID=MS.gene001210.t1.exon19;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65981986 | 65982059 | 65981986 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65982223 | 65982317 | 65982223 | ID=MS.gene001210.t1.exon20;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65982223 | 65982317 | 65982223 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65982401 | 65982432 | 65982401 | ID=MS.gene001210.t1.exon21;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65982401 | 65982432 | 65982401 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
chr3.1 | exon | 65982515 | 65982681 | 65982515 | ID=MS.gene001210.t1.exon22;Parent=MS.gene001210.t1 |
chr3.1 | CDS | 65982515 | 65982681 | 65982515 | ID=cds.MS.gene001210.t1;Parent=MS.gene001210.t1 |
Gene Sequence |
Protein sequence |