AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39809


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39809.t1 MTR_5g087870 87.309 914 97 3 1 901 41 948 0.0 1634
MS.gene39809.t1 MTR_5g087890 89.123 901 89 4 1 901 1 892 0.0 1607
MS.gene39809.t1 MTR_5g087870 85.558 914 91 3 1 901 41 926 0.0 1590
MS.gene39809.t1 MTR_6g043180 78.700 892 173 4 20 901 19 903 0.0 1451
MS.gene39809.t1 MTR_3g078647 76.384 885 186 6 29 901 50 923 0.0 1420
MS.gene39809.t1 MTR_3g010650 59.044 879 343 7 28 900 8 875 0.0 1071
MS.gene39809.t1 MTR_3g083300 59.567 878 340 8 35 900 34 908 0.0 1023
MS.gene39809.t1 MTR_6g477980 35.333 917 485 23 43 900 241 1108 1.72e-159 496
MS.gene39809.t1 MTR_4g056430 35.480 885 509 26 43 900 121 970 2.04e-159 492
MS.gene39809.t1 MTR_6g477980 35.333 917 485 23 43 900 247 1114 3.37e-159 496
MS.gene39809.t1 MTR_2g059590 34.459 888 515 22 42 900 53 902 2.21e-158 487
MS.gene39809.t1 MTR_4g056470 35.666 886 505 22 43 900 159 1007 1.56e-154 480
MS.gene39809.t1 MTR_1g102630 34.295 901 509 25 43 900 117 977 8.88e-154 478
MS.gene39809.t1 MTR_4g113200 34.719 890 510 23 42 900 26 875 2.02e-152 471
MS.gene39809.t1 MTR_1g041345 33.742 898 514 24 43 900 122 978 1.49e-149 466
MS.gene39809.t1 MTR_2g059790 37.833 600 342 13 322 900 4 593 9.72e-122 382
MS.gene39809.t1 MTR_5g042590 30.032 949 553 33 10 900 120 1015 2.08e-117 382
MS.gene39809.t1 MTR_4g083610 30.474 781 452 22 113 857 194 919 2.20e-94 319
MS.gene39809.t1 MTR_2g059590 31.205 689 412 21 42 709 53 700 1.62e-93 310
MS.gene39809.t1 MTR_2g028910 28.699 784 477 20 164 901 282 1029 2.24e-93 317
MS.gene39809.t1 MTR_7g107230 43.333 270 40 6 302 568 62 221 1.77e-49 176
MS.gene39809.t1 MTR_3g101730 34.637 179 73 4 628 802 34 172 6.13e-24 100
MS.gene39809.t1 MTR_5g099230 63.768 69 25 0 833 901 38 106 8.58e-22 92.8
MS.gene39809.t1 MTR_6g037320 54.054 74 34 0 588 661 1 74 4.41e-18 81.3
MS.gene39809.t1 MTR_1g038380 27.152 302 163 10 475 769 171 422 8.14e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39809.t1 AT2G27040 69.326 890 252 5 25 900 41 923 0.0 1295
MS.gene39809.t1 AT2G27040 69.326 890 252 5 25 900 41 923 0.0 1295
MS.gene39809.t1 AT5G21150 67.077 893 272 9 16 900 17 895 0.0 1231
MS.gene39809.t1 AT5G21030 59.686 893 307 17 17 900 5 853 0.0 1020
MS.gene39809.t1 AT5G21030 59.686 893 303 18 17 900 5 849 0.0 1013
MS.gene39809.t1 AT2G32940 56.797 868 348 8 42 900 28 877 0.0 978
MS.gene39809.t1 AT2G27880 36.149 888 496 26 43 900 150 996 1.16e-156 486
MS.gene39809.t1 AT5G43810 34.038 899 510 23 43 900 131 987 6.42e-154 478
MS.gene39809.t1 AT5G43810 34.038 899 510 23 43 900 131 987 6.42e-154 478
MS.gene39809.t1 AT5G43810 34.038 899 510 23 43 900 131 987 6.42e-154 478
MS.gene39809.t1 AT5G43810 34.038 899 510 23 43 900 131 987 6.42e-154 478
MS.gene39809.t1 AT1G48410 33.650 948 526 27 12 900 144 1047 1.19e-152 477
MS.gene39809.t1 AT1G48410 33.614 949 527 27 12 900 144 1049 2.25e-152 476
MS.gene39809.t1 AT1G48410 33.614 949 527 27 12 900 144 1049 2.25e-152 476
MS.gene39809.t1 AT1G69440 29.854 891 529 32 47 900 158 989 1.61e-106 352
MS.gene39809.t1 AT1G31280 29.176 874 521 28 20 857 146 957 1.37e-95 323
MS.gene39809.t1 AT1G31290 29.532 877 505 27 31 859 254 1065 1.72e-92 317
MS.gene39809.t1 AT1G31290 29.532 877 505 27 31 859 292 1103 3.20e-92 317
MS.gene39809.t1 AT1G31290 29.532 877 505 27 31 859 328 1139 4.94e-92 316

Find 222 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGTTGCATGCCCCTTTA+AGG 0.121508 5.4:-69184188 None:intergenic
GAAAGTTCCTACTCTCATTT+TGG 0.127511 5.4:+69187011 MS.gene39809:CDS
CCAACATCATTGAACTTCTT+TGG 0.146276 5.4:-69184392 None:intergenic
ACATATGTTTCTGAGCTTAA+TGG 0.149777 5.4:+69183860 MS.gene39809:CDS
AACTTGGAACCCCAAGTTTA+TGG 0.195760 5.4:+69188005 MS.gene39809:CDS
GGCCATTGCCGATGCCTTAA+AGG 0.196354 5.4:+69184174 MS.gene39809:CDS
GGTCGTTGTGAAAGAAATTT+TGG 0.202097 5.4:-69184370 None:intergenic
ATCTTGTACTCTTGGTTAGA+TGG 0.234083 5.4:-69184821 None:intergenic
TTTGATGTCTTTGAAGAAAA+TGG 0.240022 5.4:+69186484 MS.gene39809:CDS
ATGCCCTATATTTAGATATC+AGG 0.258968 5.4:-69187231 None:intergenic
CAGACTCTCTTATGTAAGTT+TGG 0.260770 5.4:-69189242 None:intergenic
CCAGCGCCTTTCCCTTCAAC+AGG 0.272190 5.4:-69183809 None:intergenic
AACACATTATCACGTTCTTT+TGG 0.274464 5.4:+69188822 MS.gene39809:CDS
CAACATCATTGAACTTCTTT+GGG 0.281633 5.4:-69184391 None:intergenic
TTTCCACAAGGGAAGATCTT+TGG 0.296508 5.4:-69185504 None:intergenic
AGGAAGAACTCTGATCTTTA+TGG 0.298034 5.4:+69186613 MS.gene39809:CDS
TGAGTTATACAGTTGATGTT+TGG 0.300652 5.4:+69186110 MS.gene39809:intron
ATCTTCATTGGTTTAACATT+AGG 0.301189 5.4:-69183517 None:intergenic
ATTTAAGAACCTCGATGATT+TGG 0.301451 5.4:-69187894 None:intergenic
TTTCAGTCTTGACTGGAATA+AGG 0.302768 5.4:+69184648 MS.gene39809:CDS
AGCTTCAAATCTACCTCAAT+TGG 0.309723 5.4:-69185167 None:intergenic
GAAGTTCCACCTCCCATTCC+TGG 0.316069 5.4:-69186153 None:intergenic
AGCTCCTGTTCTATCTTCAT+TGG 0.317522 5.4:-69183529 None:intergenic
AGAGTTATCAAGAAGCCATT+AGG 0.320188 5.4:+69184209 MS.gene39809:CDS
AAGAAGAGAGGTGCTGTTCC+TGG 0.327850 5.4:+69185020 MS.gene39809:CDS
GCCATTGCCGATGCCTTAAA+GGG 0.342873 5.4:+69184175 MS.gene39809:CDS
GGCCCCTGATATCTAAATAT+AGG 0.349322 5.4:+69187227 MS.gene39809:CDS
TTGGAGTGTGGACAGGGCTT+TGG 0.350730 5.4:-69185485 None:intergenic
GCCCCTGATATCTAAATATA+GGG 0.356851 5.4:+69187228 MS.gene39809:CDS
GAGTTATACAGTTGATGTTT+GGG 0.357593 5.4:+69186111 MS.gene39809:intron
TAAAAGATGAAGGAATTATA+AGG 0.366493 5.4:+69187335 MS.gene39809:CDS
CACGCTAAGTCTAAACTTCC+TGG 0.370217 5.4:+69186556 MS.gene39809:CDS
TTGAAGAAAATGGTCAGTTT+AGG 0.370672 5.4:+69186494 MS.gene39809:CDS
TTACCAGGTGGCACATTGTC+TGG 0.370941 5.4:-69188078 None:intergenic
GGAACAATGGGAGGTGGTGG+GGG 0.372497 5.4:-69183493 None:intergenic
GGGATATATGTGGGTCGCTT+TGG 0.372711 5.4:-69185146 None:intergenic
GGTGGAACAATGGGAGGTGG+TGG 0.374637 5.4:-69183496 None:intergenic
GCAAAACATTTGTCAGATAC+TGG 0.376058 5.4:-69186809 None:intergenic
AACCAAGAGTACAAGATAAC+CGG 0.382850 5.4:+69184827 MS.gene39809:CDS
GCCCGGTTATCTTGTACTCT+TGG 0.382965 5.4:-69184829 None:intergenic
GTAAATTTCTTGATGAAACT+TGG 0.385377 5.4:+69187989 MS.gene39809:CDS
GGTGGTGTACTTGGATGTAA+TGG 0.387175 5.4:+69184416 MS.gene39809:CDS
CCAATGGCTAGGCGTGGCTT+AGG 0.388666 5.4:+69183580 MS.gene39809:CDS
TGGAACAATGGGAGGTGGTG+GGG 0.405915 5.4:-69183494 None:intergenic
GAGTTATCAAGAAGCCATTA+GGG 0.407158 5.4:+69184210 MS.gene39809:CDS
TATCCTCTTCTTATCAGGGC+TGG 0.412082 5.4:-69184086 None:intergenic
AAGAAGAATCTTGCGGAAGT+TGG 0.413709 5.4:+69186747 MS.gene39809:CDS
TGAGTTCAACGTTCAAAACT+TGG 0.415160 5.4:-69187870 None:intergenic
AGAAGCCACAAGAGCGGATG+AGG 0.415926 5.4:+69185536 MS.gene39809:CDS
ACTTTGAGTGGTTCTGAAGC+TGG 0.416494 5.4:-69184447 None:intergenic
GCAAGATTCTTCTTCTTCCA+TGG 0.420877 5.4:-69186738 None:intergenic
GTAGGAACTTTCGACACAAT+AGG 0.422461 5.4:-69187000 None:intergenic
GGTGGGATGAATTCGCAGTT+AGG 0.423020 5.4:+69186955 MS.gene39809:CDS
GATAATATCAAGAACCCTAA+TGG 0.425665 5.4:-69184224 None:intergenic
GGCAACAATCACCATAAACT+TGG 0.429755 5.4:-69188016 None:intergenic
TCTTGTACTCTTGGTTAGAT+GGG 0.431925 5.4:-69184820 None:intergenic
GTTCAAGCCAGTGTCTGATA+AGG 0.438950 5.4:+69187297 MS.gene39809:CDS
TTGAAGATGTCACTTCAAAC+AGG 0.440092 5.4:+69183966 MS.gene39809:CDS
TCCAATCTGCTATGCACACT+TGG 0.440194 5.4:+69189124 MS.gene39809:CDS
AAAGGACTCTGAAGAATTTG+AGG 0.442534 5.4:+69184786 MS.gene39809:CDS
GATGTTTCTCATGGTTCACC+TGG 0.446031 5.4:+69187039 MS.gene39809:CDS
TTTATTACCGCAGCAATTGA+AGG 0.447881 5.4:-69187075 None:intergenic
CACTTGGCTGCTTCTCAAGT+TGG 0.448504 5.4:+69189140 MS.gene39809:CDS
TGCTTCGAAAATTCCTCTGC+AGG 0.449230 5.4:+69184153 MS.gene39809:CDS
GCGTTGAAAACAAGCGACTA+TGG 0.451046 5.4:+69185650 MS.gene39809:CDS
GTGGTGTACTTGGATGTAAT+GGG 0.455828 5.4:+69184417 MS.gene39809:CDS
CTCAGTGCATAGCTCCTACC+AGG 0.456685 5.4:+69186778 MS.gene39809:CDS
AAGATCTTTGGAGTGTGGAC+AGG 0.461294 5.4:-69185492 None:intergenic
TGGACAGTTCATGAAGTTTG+AGG 0.466081 5.4:+69189160 MS.gene39809:CDS
GAGATCCTTTCAGTCTTGAC+TGG 0.466546 5.4:+69184641 MS.gene39809:CDS
CCTGTTGAAGGGAAAGGCGC+TGG 0.466871 5.4:+69183809 MS.gene39809:CDS
GGGCTTTGGTATAGCGTTGA+AGG 0.467408 5.4:-69185471 None:intergenic
TTCATTGGTTTAACATTAGG+TGG 0.470116 5.4:-69183514 None:intergenic
TCTGAGTTCACAAAAGTTGA+TGG 0.472133 5.4:+69185713 MS.gene39809:CDS
TAGGAACTTTCGACACAATA+GGG 0.474487 5.4:-69186999 None:intergenic
CTAGCCATTGGAGTCTTAGT+AGG 0.475521 5.4:-69183568 None:intergenic
GATGTTGGAGGTGGTGTACT+TGG 0.475773 5.4:+69184407 MS.gene39809:CDS
TGCCCTATATTTAGATATCA+GGG 0.478254 5.4:-69187230 None:intergenic
CAACCTTCGAACCCTGAGTT+CGG 0.479693 5.4:-69187258 None:intergenic
GCCAAGTGTGCATAGCAGAT+TGG 0.480898 5.4:-69189125 None:intergenic
TTGGGCATGGATGTTTCTCA+TGG 0.483692 5.4:+69187030 MS.gene39809:CDS
ACAAGCTCCTGTAAATCATC+TGG 0.485756 5.4:-69188862 None:intergenic
ATCTGCCATGTATTAATGTC+GGG 0.486469 5.4:+69185120 MS.gene39809:CDS
GAGGTGGAACTTCAATAATA+AGG 0.488802 5.4:+69186163 MS.gene39809:CDS
AATTTACTTGTGAAGGTCCA+TGG 0.491422 5.4:+69186721 MS.gene39809:intron
CCAAAGAAGTTCAATGATGT+TGG 0.492529 5.4:+69184392 MS.gene39809:CDS
GCTTCAAATCTACCTCAATT+GGG 0.494446 5.4:-69185166 None:intergenic
AGATCAGAGTTCTTCCTCTC+AGG 0.495404 5.4:-69186607 None:intergenic
TAAACCAATGAAGATAGAAC+AGG 0.501410 5.4:+69183525 MS.gene39809:CDS
AGTAGAAACTCAGGTGGCCC+AGG 0.503206 5.4:-69186574 None:intergenic
TCATGTTCCTTATCAGACAC+TGG 0.503274 5.4:-69187304 None:intergenic
TAGGGCATGTGTCCGAACTC+AGG 0.503580 5.4:+69187246 MS.gene39809:CDS
GAAGACGGACGCCCTGTTGA+AGG 0.504080 5.4:+69183797 MS.gene39809:CDS
TACCTCAATTGGGATATATG+TGG 0.504356 5.4:-69185156 None:intergenic
AAGTTCCACCTCCCATTCCT+GGG 0.505789 5.4:-69186152 None:intergenic
TGCATGCCCCTTTAAGGCAT+CGG 0.509226 5.4:-69184182 None:intergenic
CAATGGCTAGGCGTGGCTTA+GGG 0.510534 5.4:+69183581 MS.gene39809:CDS
CCCCTTTAAGGCATCGGCAA+TGG 0.513532 5.4:-69184176 None:intergenic
CCTAAGCCACGCCTAGCCAT+TGG 0.513589 5.4:-69183580 None:intergenic
AGTGGATTGTCTCTGAACAT+AGG 0.513605 5.4:+69184467 MS.gene39809:CDS
AAGATTTCAATCCCAGGAAT+GGG 0.514505 5.4:+69186141 MS.gene39809:CDS
CTGAAAATGATGATATTGTC+CGG 0.514879 5.4:-69187718 None:intergenic
GAAGGAATTATAAAAGATGA+AGG 0.515056 5.4:+69187325 MS.gene39809:CDS
ACAACCATGATTGTACGTCC+TGG 0.516929 5.4:+69184580 MS.gene39809:CDS
CATTGTCTGGAGATCGAGGT+TGG 0.519763 5.4:-69188065 None:intergenic
TTAACATTAGGTGGAACAAT+GGG 0.521386 5.4:-69183505 None:intergenic
CAGAGACAATCCACTTTGAG+TGG 0.522358 5.4:-69184459 None:intergenic
AGCTTCAGAACCACTCAAAG+TGG 0.523148 5.4:+69184449 MS.gene39809:CDS
AGGAAGTCAACCACAGGCCC+AGG 0.524060 5.4:-69184598 None:intergenic
TCCTCAGTATCATCTTCTCC+AGG 0.525003 5.4:-69185038 None:intergenic
TATGTAAGTTTGGCAACTGT+GGG 0.525059 5.4:-69189232 None:intergenic
AAGACCCTCATCCGCTCTTG+TGG 0.527495 5.4:-69185541 None:intergenic
GAAGATTTCAATCCCAGGAA+TGG 0.528974 5.4:+69186140 MS.gene39809:CDS
ACAGCAAAATTTGTCATCCT+AGG 0.529186 5.4:+69188200 MS.gene39809:CDS
AGCAGACAAAGTAGAAACTC+AGG 0.530875 5.4:-69186583 None:intergenic
GTGGAACAATGGGAGGTGGT+GGG 0.531726 5.4:-69183495 None:intergenic
ATAAAATGTGGAAGAATGAA+AGG 0.536134 5.4:+69186365 MS.gene39809:CDS
GCAACAATCACCATAAACTT+GGG 0.537175 5.4:-69188015 None:intergenic
GCACGGAAATTCGCTCAGCC+CGG 0.542397 5.4:-69184846 None:intergenic
GGACGCCCTGTTGAAGGGAA+AGG 0.544084 5.4:+69183803 MS.gene39809:CDS
TCAATCCCAGGAATGGGAGG+TGG 0.546294 5.4:+69186147 MS.gene39809:CDS
CAACCATGATTGTACGTCCT+GGG 0.546323 5.4:+69184581 MS.gene39809:CDS
CTTCCCTTGTGGAAAAGTCT+AGG 0.546591 5.4:+69185512 MS.gene39809:CDS
TAGGCGTGGCTTAGGGACGA+AGG 0.548886 5.4:+69183588 MS.gene39809:CDS
CAACTTTATAAGTCTTCGAA+CGG 0.549728 5.4:-69184120 None:intergenic
AGAGCGGATGAGGGTCTTGT+CGG 0.559054 5.4:+69185546 MS.gene39809:CDS
GAGAAGACTCTGTTCACAAT+CGG 0.560053 5.4:+69183905 MS.gene39809:CDS
ACGCTAAGTCTAAACTTCCT+GGG 0.560741 5.4:+69186557 MS.gene39809:CDS
ACCTCAATTGGGATATATGT+GGG 0.560837 5.4:-69185155 None:intergenic
AGATCTTTGGAGTGTGGACA+GGG 0.562024 5.4:-69185491 None:intergenic
GGAAAAGACCTTGCTTATGA+CGG 0.562480 5.4:+69183881 MS.gene39809:CDS
ATACAGTTGATGTTTGGGAA+TGG 0.562563 5.4:+69186116 MS.gene39809:intron
GGCTTCCCGACATTAATACA+TGG 0.563279 5.4:-69185125 None:intergenic
CTGTTGAAGGGAAAGGCGCT+GGG 0.563656 5.4:+69183810 MS.gene39809:CDS
AACTTTCGACACAATAGGGA+TGG 0.563776 5.4:-69186995 None:intergenic
TTATGTAAGTTTGGCAACTG+TGG 0.564381 5.4:-69189233 None:intergenic
AGGGCATGTGTCCGAACTCA+GGG 0.564985 5.4:+69187247 MS.gene39809:CDS
TGAATGTTGCTAACACAGAT+GGG 0.567590 5.4:+69183647 MS.gene39809:CDS
GTTCACAAAAGTTGATGGGA+GGG 0.568673 5.4:+69185718 MS.gene39809:CDS
AATTACAGCTGGTCTTTGCA+CGG 0.569959 5.4:-69184863 None:intergenic
TCAAAGTGATTTGTTAACAA+AGG 0.572097 5.4:-69183622 None:intergenic
TTTAACATTAGGTGGAACAA+TGG 0.572957 5.4:-69183506 None:intergenic
AAGACGGACGCCCTGTTGAA+GGG 0.576702 5.4:+69183798 MS.gene39809:CDS
GATCTGCCATGTATTAATGT+CGG 0.578286 5.4:+69185119 MS.gene39809:CDS
GGCTTTGGTATAGCGTTGAA+GGG 0.578616 5.4:-69185470 None:intergenic
GTTTAGGCGTGCACCGCCTG+TGG 0.579359 5.4:+69186510 MS.gene39809:CDS
AGGCCCAGGACGTACAATCA+TGG 0.579593 5.4:-69184584 None:intergenic
TCTCCAGACAATGTGCCACC+TGG 0.581107 5.4:+69188075 MS.gene39809:CDS
TTCTCAACTCTGACCACAGG+CGG 0.583005 5.4:-69186523 None:intergenic
AAGAAGTTCAATGATGTTGG+AGG 0.583327 5.4:+69184395 MS.gene39809:CDS
TTATTCCAGTCAAGACTGAA+AGG 0.584520 5.4:-69184646 None:intergenic
AGTTTGGCAACTGTGGGATG+AGG 0.584759 5.4:-69189226 None:intergenic
CTGAGTTCACAAAAGTTGAT+GGG 0.585192 5.4:+69185714 MS.gene39809:CDS
CTACTAAGACTCCAATGGCT+AGG 0.585767 5.4:+69183569 MS.gene39809:CDS
TACTTTGTCTGCTTCCTGAG+AGG 0.586786 5.4:+69186593 MS.gene39809:CDS
AAAAGAACGTGATAATGTGT+TGG 0.587237 5.4:-69188820 None:intergenic
ACCCACATATATCCCAATTG+AGG 0.591113 5.4:+69185154 MS.gene39809:CDS
CAGCGCCTTTCCCTTCAACA+GGG 0.591713 5.4:-69183808 None:intergenic
TGGTATTGCAGGAACTGTTG+TGG 0.591832 5.4:+69188177 MS.gene39809:intron
TATGTTCTCAGGGTACAAGC+AGG 0.592354 5.4:+69188797 MS.gene39809:intron
ATATTGTTTCCAGAAAATTG+TGG 0.594790 5.4:+69186265 MS.gene39809:intron
AGCACCACTGCTATTTCTGT+CGG 0.595497 5.4:+69189015 MS.gene39809:CDS
TGTCCGAACTCAGGGTTCGA+AGG 0.595831 5.4:+69187255 MS.gene39809:CDS
GTGAATGTTGCTAACACAGA+TGG 0.596476 5.4:+69183646 MS.gene39809:CDS
ATGGCGAAGATTTCAATCCC+AGG 0.596896 5.4:+69186135 MS.gene39809:CDS
GTTTGGCAACTGTGGGATGA+GGG 0.597169 5.4:-69189225 None:intergenic
TCTGAAGAATTTGAGGATCA+CGG 0.600179 5.4:+69184793 MS.gene39809:CDS
CAGATACTGGTCATTAACCC+TGG 0.602238 5.4:-69186796 None:intergenic
TTAGGTGGAACAATGGGAGG+TGG 0.602555 5.4:-69183499 None:intergenic
GAAGGAATGTCAGATTGCCC+AGG 0.602653 5.4:-69187057 None:intergenic
TCTGAAGCTTCCTCGAGCCA+AGG 0.603304 5.4:+69189188 MS.gene39809:CDS
ACACCAGCCCTGATAAGAAG+AGG 0.605422 5.4:+69184083 MS.gene39809:CDS
AGGTTGTTAGCTCGAGGCAA+TGG 0.606988 5.4:+69187206 MS.gene39809:intron
TCTTCTCGCCGTCATAAGCA+AGG 0.608245 5.4:-69183889 None:intergenic
TCCATGCCCAAAATGAGAGT+AGG 0.610630 5.4:-69187018 None:intergenic
TGACATTCCTTCAATTGCTG+CGG 0.612470 5.4:+69187068 MS.gene39809:CDS
AGTTCACAAAAGTTGATGGG+AGG 0.613338 5.4:+69185717 MS.gene39809:CDS
ATTCAGAATATGAGTTCACA+AGG 0.617684 5.4:+69183454 None:intergenic
GGCACATTGTCTGGAGATCG+AGG 0.617706 5.4:-69188069 None:intergenic
TTTGCTGAAGATCAATGCAA+AGG 0.619675 5.4:+69186827 MS.gene39809:CDS
ACATTAGGTGGAACAATGGG+AGG 0.620734 5.4:-69183502 None:intergenic
TCTTCAAAGACATCAAAAGG+TGG 0.623654 5.4:-69186478 None:intergenic
GATTGTACGTCCTGGGCCTG+TGG 0.625876 5.4:+69184588 MS.gene39809:CDS
TCTGCACGCTGTGATGTGCG+AGG 0.626472 5.4:+69186326 MS.gene39809:CDS
GCTTCCTACTAAGACTCCAA+TGG 0.626834 5.4:+69183564 MS.gene39809:CDS
ATTTCAATCCCAGGAATGGG+AGG 0.627870 5.4:+69186144 MS.gene39809:CDS
GCAATTAGGAAGTCAACCAC+AGG 0.628616 5.4:-69184604 None:intergenic
TAGTTCTGAGGAAAGACGAC+CGG 0.628720 5.4:+69187699 MS.gene39809:CDS
ACTCCAAAGATCTTCCCTTG+TGG 0.628844 5.4:+69185501 MS.gene39809:CDS
AAGGGAAGATCTTTGGAGTG+TGG 0.631222 5.4:-69185497 None:intergenic
GTGTCTGATAAGGAACATGA+AGG 0.631854 5.4:+69187307 MS.gene39809:CDS
ATATGTAGGTTGTTAGCTCG+AGG 0.632028 5.4:+69187200 MS.gene39809:intron
AAGTTCAATGATGTTGGAGG+TGG 0.633799 5.4:+69184398 MS.gene39809:CDS
ATTGATACCACCTTGGCTCG+AGG 0.633939 5.4:-69189198 None:intergenic
GCATCGGCAATGGCCTGCAG+AGG 0.634030 5.4:-69184166 None:intergenic
AGGTTTACTCTGAAGAAGAG+AGG 0.635949 5.4:+69185008 MS.gene39809:intron
ACCAAGAGTACAAGATAACC+GGG 0.637792 5.4:+69184828 MS.gene39809:CDS
TATGAGTTCACAAGGACACA+AGG 0.637843 5.4:+69183462 None:intergenic
TCCTGGAGAAGATGATACTG+AGG 0.643602 5.4:+69185037 MS.gene39809:CDS
CTAGGCAGAAGCCACAAGAG+CGG 0.652116 5.4:+69185530 MS.gene39809:CDS
GGGAGGCATTGATACCACCT+TGG 0.656005 5.4:-69189205 None:intergenic
GAGCGAATGCTACGTAACTG+TGG 0.659030 5.4:+69185677 MS.gene39809:CDS
CAACAATCACCATAAACTTG+GGG 0.659854 5.4:-69188014 None:intergenic
ATGGAAGAAGAAGAATCTTG+CGG 0.662730 5.4:+69186740 MS.gene39809:CDS
ATGTTTCTCATGGTTCACCT+GGG 0.664179 5.4:+69187040 MS.gene39809:CDS
GAAGCCACAAGAGCGGATGA+GGG 0.664428 5.4:+69185537 MS.gene39809:CDS
TGGCAACTGTGGGATGAGGG+AGG 0.664690 5.4:-69189222 None:intergenic
TGATGTGCGAGGACTTGTGA+GGG 0.666371 5.4:+69186337 MS.gene39809:CDS
AGGCGTGGCTTAGGGACGAA+GGG 0.667402 5.4:+69183589 MS.gene39809:CDS
CCATTGCCGATGCCTTAAAG+GGG 0.668294 5.4:+69184176 MS.gene39809:CDS
AAGACTCCAATGGCTAGGCG+TGG 0.674690 5.4:+69183574 MS.gene39809:CDS
GTGATGTGCGAGGACTTGTG+AGG 0.675054 5.4:+69186336 MS.gene39809:CDS
GTGAGGGATCTGATAAAATG+TGG 0.676503 5.4:+69186353 MS.gene39809:CDS
GCCCTATATTTAGATATCAG+GGG 0.682408 5.4:-69187229 None:intergenic
TTGAAGGGAAAGGCGCTGGG+AGG 0.682795 5.4:+69183813 MS.gene39809:CDS
GAAGCTTCCTCGAGCCAAGG+TGG 0.691119 5.4:+69189191 MS.gene39809:CDS
TACTGGTCATTAACCCTGGT+AGG 0.692148 5.4:-69186792 None:intergenic
AGACAAAGTAGAAACTCAGG+TGG 0.699917 5.4:-69186580 None:intergenic
TGTATGACAACAGTTATCAG+CGG 0.706525 5.4:+69188992 MS.gene39809:intron
TCAGTGCATAGCTCCTACCA+GGG 0.714408 5.4:+69186779 MS.gene39809:CDS
TGAACTCAGCCAAATCATCG+AGG 0.745228 5.4:+69187885 MS.gene39809:CDS
CTTACCGACAGAAATAGCAG+TGG 0.760890 5.4:-69189019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATATATAAAAAAA+TGG - chr5.4:69188132-69188151 None:intergenic 0.0%
!! AATATAATTAATGTTATTGT+AGG + chr5.4:69187821-69187840 MS.gene39809:intron 10.0%
!! ATATAATTAATGTTATTGTA+GGG + chr5.4:69187822-69187841 MS.gene39809:intron 10.0%
!!! ATATATATTGTTTTTTTTTG+GGG + chr5.4:69187935-69187954 MS.gene39809:intron 10.0%
!!! TCAATATATTTATTTTCATT+GGG + chr5.4:69188398-69188417 MS.gene39809:intron 10.0%
!!! TTCAATATATTTATTTTCAT+TGG + chr5.4:69188397-69188416 MS.gene39809:intron 10.0%
!! ATAATATTAAAAGAAACCAA+AGG - chr5.4:69186866-69186885 None:intergenic 15.0%
!! ATATAAAAATCATAATTCCT+AGG - chr5.4:69188220-69188239 None:intergenic 15.0%
!! CATTTACAAAATCTATAAAT+TGG + chr5.4:69185259-69185278 MS.gene39809:intron 15.0%
!! CCTTCTTAATAAAAATTAAT+TGG + chr5.4:69186697-69186716 MS.gene39809:intron 15.0%
!! GAAAATAAATATATTGAACT+CGG - chr5.4:69188395-69188414 None:intergenic 15.0%
!! TAACAAATGCATTAAAAAAA+AGG - chr5.4:69186672-69186691 None:intergenic 15.0%
!!! CCAATTAATTTTTATTAAGA+AGG - chr5.4:69186700-69186719 None:intergenic 15.0%
!!! TATATATTGTTTTTTTTTGG+GGG + chr5.4:69187936-69187955 MS.gene39809:intron 15.0%
!!! TTTTTAATGCATTTGTTAAA+TGG + chr5.4:69186674-69186693 MS.gene39809:intron 15.0%
!! AAAAAAAGGTAAATAGAACA+TGG - chr5.4:69186658-69186677 None:intergenic 20.0%
!! AAAATTTCTTCCAAAAGTAA+TGG - chr5.4:69185976-69185995 None:intergenic 20.0%
!! AACCTGTTAAAATAAAAAAC+TGG + chr5.4:69186288-69186307 MS.gene39809:CDS 20.0%
!! AATAATTTCAAGGAAAAACT+TGG - chr5.4:69187379-69187398 None:intergenic 20.0%
!! AATATTATTTCCTGATTTAC+AGG + chr5.4:69185628-69185647 MS.gene39809:intron 20.0%
!! ACCTGTTAAAATAAAAAACT+GGG + chr5.4:69186289-69186308 MS.gene39809:CDS 20.0%
!! ATGAGTATAACAAAAAGTTA+AGG - chr5.4:69184712-69184731 None:intergenic 20.0%
!! ATTACACAATCAACTTAAAA+TGG - chr5.4:69184897-69184916 None:intergenic 20.0%
!! ATTACAGATTATTATCAGAA+TGG - chr5.4:69188717-69188736 None:intergenic 20.0%
!! CTACACAATAAAATATACAA+GGG - chr5.4:69184762-69184781 None:intergenic 20.0%
!! TAAAAGATGAAGGAATTATA+AGG + chr5.4:69187335-69187354 MS.gene39809:CDS 20.0%
!! TAATTATAACCATGTAAATC+AGG - chr5.4:69188628-69188647 None:intergenic 20.0%
!! TAGTTTGATAAATAAGTACA+AGG - chr5.4:69188779-69188798 None:intergenic 20.0%
!! TTACACAATCAACTTAAAAT+GGG - chr5.4:69184896-69184915 None:intergenic 20.0%
!!! AAAATAATCACCATTACTTT+TGG + chr5.4:69185963-69185982 MS.gene39809:intron 20.0%
!!! AGTTGATGGTTTATTTATTT+TGG + chr5.4:69187630-69187649 MS.gene39809:intron 20.0%
!!! ATCTAAATCTTTCAAGTTTT+AGG + chr5.4:69187963-69187982 MS.gene39809:intron 20.0%
!!! ATGTGTATATATGTTCTTTT+AGG + chr5.4:69188348-69188367 MS.gene39809:intron 20.0%
!!! GTTGATGGTTTATTTATTTT+GGG + chr5.4:69187631-69187650 MS.gene39809:intron 20.0%
!!! TATTTAACTTTGCCTTTTAT+AGG + chr5.4:69184050-69184069 MS.gene39809:intron 20.0%
!!! TTTTATCTATGTTTTGTTGA+TGG + chr5.4:69186211-69186230 MS.gene39809:intron 20.0%
!!! TTTTTCCTTGAAATTATTTC+AGG + chr5.4:69187381-69187400 MS.gene39809:intron 20.0%
! AATAAAATATACAAGGGATC+AGG - chr5.4:69184756-69184775 None:intergenic 25.0%
! AATAACAGCGAATGAATTAA+GGG - chr5.4:69185820-69185839 None:intergenic 25.0%
! AATAGCTAATACACATTATG+AGG - chr5.4:69185213-69185232 None:intergenic 25.0%
! AATTAATGTTATTGTAGGGA+TGG + chr5.4:69187826-69187845 MS.gene39809:intron 25.0%
! AATTGGAAATTTACTTGTGA+AGG + chr5.4:69186714-69186733 MS.gene39809:intron 25.0%
! ACATATGTAGACATTTACAT+GGG - chr5.4:69187186-69187205 None:intergenic 25.0%
! AGGTATATTAATTCTTCCTT+TGG + chr5.4:69186847-69186866 MS.gene39809:intron 25.0%
! ATAAAATGTGGAAGAATGAA+AGG + chr5.4:69186365-69186384 MS.gene39809:CDS 25.0%
! ATACACAAAATCTTGATTAC+TGG + chr5.4:69188437-69188456 MS.gene39809:intron 25.0%
! ATATAATTTACCTAGTCTCT+CGG + chr5.4:69185235-69185254 MS.gene39809:intron 25.0%
! ATATTGTTTCCAGAAAATTG+TGG + chr5.4:69186265-69186284 MS.gene39809:intron 25.0%
! ATCGACATGCAATAAAATAT+CGG - chr5.4:69187421-69187440 None:intergenic 25.0%
! ATCTTTGTAATATCTATCAC+AGG + chr5.4:69184330-69184349 MS.gene39809:intron 25.0%
! ATGTAAATGTCTACATATGT+AGG + chr5.4:69187186-69187205 MS.gene39809:intron 25.0%
! ATTTACTGACATGCATAAAA+AGG + chr5.4:69186411-69186430 MS.gene39809:intron 25.0%
! ATTTATCAAACTATGTTCTC+AGG + chr5.4:69188786-69188805 MS.gene39809:intron 25.0%
! CAACAATATAACTATCAAAC+AGG - chr5.4:69186005-69186024 None:intergenic 25.0%
! CCTACACAATAAAATATACA+AGG - chr5.4:69184763-69184782 None:intergenic 25.0%
! CGAAAATAGTTATCAAGTAT+TGG - chr5.4:69185412-69185431 None:intergenic 25.0%
! CTTATGTGTAAGTTTACATT+TGG + chr5.4:69188896-69188915 MS.gene39809:intron 25.0%
! GAAGGAATTATAAAAGATGA+AGG + chr5.4:69187325-69187344 MS.gene39809:CDS 25.0%
! GTAAATTTCTTGATGAAACT+TGG + chr5.4:69187989-69188008 MS.gene39809:CDS 25.0%
! TACATATGTAGACATTTACA+TGG - chr5.4:69187187-69187206 None:intergenic 25.0%
! TAGAACATGGAAATATATCA+AGG - chr5.4:69186645-69186664 None:intergenic 25.0%
! TCATAATGTGTATTAGCTAT+TGG + chr5.4:69185212-69185231 MS.gene39809:intron 25.0%
! TCTAATATTCAAAGATCGAT+TGG + chr5.4:69187445-69187464 MS.gene39809:intron 25.0%
! TCTTTGTAATATCTATCACA+GGG + chr5.4:69184331-69184350 MS.gene39809:intron 25.0%
! TTTATCAAACTATGTTCTCA+GGG + chr5.4:69188787-69188806 MS.gene39809:intron 25.0%
! TTTATGACTTTCTTAATGTC+TGG + chr5.4:69184920-69184939 MS.gene39809:intron 25.0%
!! AAGATAATTTGAAGTCTTCA+AGG - chr5.4:69188688-69188707 None:intergenic 25.0%
!! AGTCAGTCTTTGAAAAAATT+AGG - chr5.4:69187481-69187500 None:intergenic 25.0%
!! ATTTTATTGTGTAGGCTAAA+AGG + chr5.4:69184768-69184787 MS.gene39809:intron 25.0%
!! ATTTTGTATGATGATTCTTC+TGG - chr5.4:69188041-69188060 None:intergenic 25.0%
!! CCTTGTATATTTTATTGTGT+AGG + chr5.4:69184760-69184779 MS.gene39809:intron 25.0%
!! GATTTTATTCTTTTGTAGCT+TGG + chr5.4:69186934-69186953 MS.gene39809:intron 25.0%
!! TATTCTATTTCGTTTGCTTT+TGG + chr5.4:69186443-69186462 MS.gene39809:intron 25.0%
!! TATTTTATTGCATGTCGATA+AGG + chr5.4:69187422-69187441 MS.gene39809:intron 25.0%
!! TTTGATGTCTTTGAAGAAAA+TGG + chr5.4:69186484-69186503 MS.gene39809:CDS 25.0%
!! TTTTCTTCAAAGACATCAAA+AGG - chr5.4:69186484-69186503 None:intergenic 25.0%
!! TTTTGTATGATGATTCTTCT+GGG - chr5.4:69188040-69188059 None:intergenic 25.0%
!! TTTTTATCCTCTTCTTATCA+GGG - chr5.4:69184093-69184112 None:intergenic 25.0%
!!! ATCTTCATTGGTTTAACATT+AGG - chr5.4:69183520-69183539 None:intergenic 25.0%
!!! CTTTTGAAAATATGTCTCTA+AGG + chr5.4:69187115-69187134 MS.gene39809:intron 25.0%
!!! GGTTTATTTATTTTGGGAAT+TGG + chr5.4:69187637-69187656 MS.gene39809:intron 25.0%
!!! TCAAAGTGATTTGTTAACAA+AGG - chr5.4:69183625-69183644 None:intergenic 25.0%
!!! TTTTTTATCCTCTTCTTATC+AGG - chr5.4:69184094-69184113 None:intergenic 25.0%
AGGAACAATTAGCAAAACAA+AGG - chr5.4:69184692-69184711 None:intergenic 30.0%
ATGATAGAATGCAAGCAAAA+AGG - chr5.4:69188740-69188759 None:intergenic 30.0%
ATGCCCTATATTTAGATATC+AGG - chr5.4:69187234-69187253 None:intergenic 30.0%
ATGTCAAGCATTCAAAGAAA+TGG - chr5.4:69185936-69185955 None:intergenic 30.0%
ATTTAAGAACCTCGATGATT+TGG - chr5.4:69187897-69187916 None:intergenic 30.0%
CAACATCATTGAACTTCTTT+GGG - chr5.4:69184394-69184413 None:intergenic 30.0%
CAACTTTATAAGTCTTCGAA+CGG - chr5.4:69184123-69184142 None:intergenic 30.0%
CAATAACAGCGAATGAATTA+AGG - chr5.4:69185821-69185840 None:intergenic 30.0%
CTGAAAATGATGATATTGTC+CGG - chr5.4:69187721-69187740 None:intergenic 30.0%
CTTTGTAATATCTATCACAG+GGG + chr5.4:69184332-69184351 MS.gene39809:intron 30.0%
GATAATATCAAGAACCCTAA+TGG - chr5.4:69184227-69184246 None:intergenic 30.0%
GATGAGAATATAGACAACAA+AGG - chr5.4:69184506-69184525 None:intergenic 30.0%
TAAAATAAAAAACTGGGCTG+TGG + chr5.4:69186295-69186314 MS.gene39809:CDS 30.0%
TAAACCAATGAAGATAGAAC+AGG + chr5.4:69183525-69183544 MS.gene39809:CDS 30.0%
TCCCCAAATTACATGATAAA+CGG - chr5.4:69188474-69188493 None:intergenic 30.0%
TCGACATGCAATAAAATATC+GGG - chr5.4:69187420-69187439 None:intergenic 30.0%
TGATAAAAGAACAATACCCT+TGG - chr5.4:69185755-69185774 None:intergenic 30.0%
TGCCCTATATTTAGATATCA+GGG - chr5.4:69187233-69187252 None:intergenic 30.0%
TTAACATTAGGTGGAACAAT+GGG - chr5.4:69183508-69183527 None:intergenic 30.0%
TTGAAGAAAATGGTCAGTTT+AGG + chr5.4:69186494-69186513 MS.gene39809:CDS 30.0%
TTTAACATTAGGTGGAACAA+TGG - chr5.4:69183509-69183528 None:intergenic 30.0%
TTTATCATGTAATTTGGGGA+TGG + chr5.4:69188474-69188493 MS.gene39809:intron 30.0%
! AAAAGAACGTGATAATGTGT+TGG - chr5.4:69188823-69188842 None:intergenic 30.0%
! AAAGTTCCTACTCTCATTTT+GGG + chr5.4:69187012-69187031 MS.gene39809:CDS 30.0%
! AACACATTATCACGTTCTTT+TGG + chr5.4:69188822-69188841 MS.gene39809:CDS 30.0%
! ACATATGTTTCTGAGCTTAA+TGG + chr5.4:69183860-69183879 MS.gene39809:CDS 30.0%
! GAGTTATACAGTTGATGTTT+GGG + chr5.4:69186111-69186130 MS.gene39809:intron 30.0%
! GTTGTTATTAATGAAGATGC+CGG + chr5.4:69184979-69184998 MS.gene39809:intron 30.0%
! TGAGTTATACAGTTGATGTT+TGG + chr5.4:69186110-69186129 MS.gene39809:intron 30.0%
! TGCCGTTTATCATGTAATTT+GGG + chr5.4:69188469-69188488 MS.gene39809:intron 30.0%
! TTATAGCAGTTTTCAGTTGA+TGG + chr5.4:69187616-69187635 MS.gene39809:intron 30.0%
! TTATTCTTTTGTAGCTTGGT+GGG + chr5.4:69186938-69186957 MS.gene39809:intron 30.0%
! TTGAAAATATGTCTCTAAGG+TGG + chr5.4:69187118-69187137 MS.gene39809:intron 30.0%
! TTGCCGTTTATCATGTAATT+TGG + chr5.4:69188468-69188487 MS.gene39809:intron 30.0%
! TTTATTCTTTTGTAGCTTGG+TGG + chr5.4:69186937-69186956 MS.gene39809:intron 30.0%
!! TTCATTGGTTTAACATTAGG+TGG - chr5.4:69183517-69183536 None:intergenic 30.0%
!! TTTGAAATTGGTGTTGTTCA+TGG + chr5.4:69184011-69184030 MS.gene39809:intron 30.0%
!!! AATTGGTTTTACGATATGCA+GGG + chr5.4:69187654-69187673 MS.gene39809:intron 30.0%
!!! CATTACTCCAATCCTTTTTT+CGG + chr5.4:69188602-69188621 MS.gene39809:intron 30.0%
!!! GCCCAGTTTTTTATTTTAAC+AGG - chr5.4:69186293-69186312 None:intergenic 30.0%
!!! GTTGCTTTGTTTTATGAAGA+CGG + chr5.4:69183782-69183801 MS.gene39809:CDS 30.0%
!!! TCTCTAAGGTGGTATTTTAT+GGG + chr5.4:69187129-69187148 MS.gene39809:intron 30.0%
!!! TGATTTTTTTCGTAGTTCTG+AGG + chr5.4:69187687-69187706 MS.gene39809:CDS 30.0%
!!! TGGATGTTGGTTTTTGAAAT+TGG + chr5.4:69183999-69184018 MS.gene39809:intron 30.0%
!!! TTTTACTTAGCTTTGCTCTT+TGG + chr5.4:69185444-69185463 MS.gene39809:intron 30.0%
AAGAAGTTCAATGATGTTGG+AGG + chr5.4:69184395-69184414 MS.gene39809:CDS 35.0%
AAGATTTCAATCCCAGGAAT+GGG + chr5.4:69186141-69186160 MS.gene39809:CDS 35.0%
AATTTACTTGTGAAGGTCCA+TGG + chr5.4:69186721-69186740 MS.gene39809:intron 35.0%
ACAGCAAAATTTGTCATCCT+AGG + chr5.4:69188200-69188219 MS.gene39809:CDS 35.0%
ACCTCAATTGGGATATATGT+GGG - chr5.4:69185158-69185177 None:intergenic 35.0%
AGAGTTATCAAGAAGCCATT+AGG + chr5.4:69184209-69184228 MS.gene39809:CDS 35.0%
AGCTTCAAATCTACCTCAAT+TGG - chr5.4:69185170-69185189 None:intergenic 35.0%
AGGAAGAACTCTGATCTTTA+TGG + chr5.4:69186613-69186632 MS.gene39809:CDS 35.0%
ATCTGCCATGTATTAATGTC+GGG + chr5.4:69185120-69185139 MS.gene39809:CDS 35.0%
ATCTTGTACTCTTGGTTAGA+TGG - chr5.4:69184824-69184843 None:intergenic 35.0%
ATGGAAGAAGAAGAATCTTG+CGG + chr5.4:69186740-69186759 MS.gene39809:CDS 35.0%
ATGTAAATCAGGCCGAAAAA+AGG - chr5.4:69188617-69188636 None:intergenic 35.0%
CAACAAGTAGAAGAAAACGA+TGG - chr5.4:69187769-69187788 None:intergenic 35.0%
CAACAATCACCATAAACTTG+GGG - chr5.4:69188017-69188036 None:intergenic 35.0%
CAGACTCTCTTATGTAAGTT+TGG - chr5.4:69189245-69189264 None:intergenic 35.0%
CCAAAGAAGTTCAATGATGT+TGG + chr5.4:69184392-69184411 MS.gene39809:CDS 35.0%
CCAACATCATTGAACTTCTT+TGG - chr5.4:69184395-69184414 None:intergenic 35.0%
CTCATACAATGTATTTGTGC+AGG + chr5.4:69183760-69183779 MS.gene39809:intron 35.0%
GAATGAATTAAGGGAAGACA+AGG - chr5.4:69185811-69185830 None:intergenic 35.0%
GAGGTGGAACTTCAATAATA+AGG + chr5.4:69186163-69186182 MS.gene39809:CDS 35.0%
GAGTTATCAAGAAGCCATTA+GGG + chr5.4:69184210-69184229 MS.gene39809:CDS 35.0%
GATCTGCCATGTATTAATGT+CGG + chr5.4:69185119-69185138 MS.gene39809:CDS 35.0%
GCAAAACATTTGTCAGATAC+TGG - chr5.4:69186812-69186831 None:intergenic 35.0%
GCAACAATCACCATAAACTT+GGG - chr5.4:69188018-69188037 None:intergenic 35.0%
GCCCCTGATATCTAAATATA+GGG + chr5.4:69187228-69187247 MS.gene39809:CDS 35.0%
GCCCTATATTTAGATATCAG+GGG - chr5.4:69187232-69187251 None:intergenic 35.0%
GCCGTTTATCATGTAATTTG+GGG + chr5.4:69188470-69188489 MS.gene39809:intron 35.0%
GCTTCAAATCTACCTCAATT+GGG - chr5.4:69185169-69185188 None:intergenic 35.0%
GTCGTCCTGAAATAATTTCA+AGG - chr5.4:69187389-69187408 None:intergenic 35.0%
GTTCGCATTGTTCCTATAAA+AGG - chr5.4:69184065-69184084 None:intergenic 35.0%
TACCTCAATTGGGATATATG+TGG - chr5.4:69185159-69185178 None:intergenic 35.0%
TAGGAACTTTCGACACAATA+GGG - chr5.4:69187002-69187021 None:intergenic 35.0%
TATGTAAGTTTGGCAACTGT+GGG - chr5.4:69189235-69189254 None:intergenic 35.0%
TCAGAGTAAACCTACAATAC+CGG - chr5.4:69185001-69185020 None:intergenic 35.0%
TCTGAAGAATTTGAGGATCA+CGG + chr5.4:69184793-69184812 MS.gene39809:CDS 35.0%
TCTGAGTTCACAAAAGTTGA+TGG + chr5.4:69185713-69185732 MS.gene39809:CDS 35.0%
TCTTCAAAGACATCAAAAGG+TGG - chr5.4:69186481-69186500 None:intergenic 35.0%
TCTTGTACTCTTGGTTAGAT+GGG - chr5.4:69184823-69184842 None:intergenic 35.0%
TGAATGTTGCTAACACAGAT+GGG + chr5.4:69183647-69183666 MS.gene39809:CDS 35.0%
TGAGTTCAACGTTCAAAACT+TGG - chr5.4:69187873-69187892 None:intergenic 35.0%
TGGGATAGAAAAATTACAGC+TGG - chr5.4:69184877-69184896 None:intergenic 35.0%
TGTATGACAACAGTTATCAG+CGG + chr5.4:69188992-69189011 MS.gene39809:intron 35.0%
TTATGTAAGTTTGGCAACTG+TGG - chr5.4:69189236-69189255 None:intergenic 35.0%
TTATTCCAGTCAAGACTGAA+AGG - chr5.4:69184649-69184668 None:intergenic 35.0%
TTCAAAACAAGCTGATTACC+AGG - chr5.4:69188096-69188115 None:intergenic 35.0%
TTTATTACCGCAGCAATTGA+AGG - chr5.4:69187078-69187097 None:intergenic 35.0%
TTTCAGTCTTGACTGGAATA+AGG + chr5.4:69184648-69184667 MS.gene39809:CDS 35.0%
TTTGCTGAAGATCAATGCAA+AGG + chr5.4:69186827-69186846 MS.gene39809:CDS 35.0%
! AAAGGACTCTGAAGAATTTG+AGG + chr5.4:69184786-69184805 MS.gene39809:CDS 35.0%
! AACCAAGAGTACAAGATAAC+CGG + chr5.4:69184827-69184846 MS.gene39809:CDS 35.0%
! ATACAGTTGATGTTTGGGAA+TGG + chr5.4:69186116-69186135 MS.gene39809:intron 35.0%
! ATGTCTAGCTAACCTCTTTT+TGG + chr5.4:69188157-69188176 MS.gene39809:intron 35.0%
! CATCGTTTTCTTCTACTTGT+TGG + chr5.4:69187767-69187786 MS.gene39809:intron 35.0%
! CGGACAATATCATCATTTTC+AGG + chr5.4:69187719-69187738 MS.gene39809:CDS 35.0%
! CTGAGTTCACAAAAGTTGAT+GGG + chr5.4:69185714-69185733 MS.gene39809:CDS 35.0%
! CTTTTCTCCAGATGATTTAC+AGG + chr5.4:69188855-69188874 MS.gene39809:CDS 35.0%
! GAAAGTTCCTACTCTCATTT+TGG + chr5.4:69187011-69187030 MS.gene39809:CDS 35.0%
! GGTCGTTGTGAAAGAAATTT+TGG - chr5.4:69184373-69184392 None:intergenic 35.0%
! TAACAGGTTCCACAATTTTC+TGG - chr5.4:69186277-69186296 None:intergenic 35.0%
! TTGAAGATGTCACTTCAAAC+AGG + chr5.4:69183966-69183985 MS.gene39809:CDS 35.0%
! TTTTATATGTGTGCTCATGC+TGG + chr5.4:69188232-69188251 MS.gene39809:CDS 35.0%
! TTTTCCTTTCGTACTCACAT+TGG + chr5.4:69186909-69186928 MS.gene39809:intron 35.0%
! TTTTCTCAAGAAGCAGTGAA+TGG + chr5.4:69185326-69185345 MS.gene39809:intron 35.0%
!! AACAAAGGCATCAGAAAATC+TGG - chr5.4:69184677-69184696 None:intergenic 35.0%
!! TAACCTCTTTTTGGTATTGC+AGG + chr5.4:69188166-69188185 MS.gene39809:intron 35.0%
!!! GAATTGGTTTTACGATATGC+AGG + chr5.4:69187653-69187672 MS.gene39809:intron 35.0%
!!! GTCTCTAAGGTGGTATTTTA+TGG + chr5.4:69187128-69187147 MS.gene39809:intron 35.0%
!!! TCGCATTTTGATTGGCAATT+AGG - chr5.4:69184621-69184640 None:intergenic 35.0%
!!! TTTTTTCGGCCTGATTTACA+TGG + chr5.4:69188616-69188635 MS.gene39809:intron 35.0%
AAAACAAGCTGATTACCAGG+TGG - chr5.4:69188093-69188112 None:intergenic 40.0%
AACTTGGAACCCCAAGTTTA+TGG + chr5.4:69188005-69188024 MS.gene39809:CDS 40.0%
AACTTTCGACACAATAGGGA+TGG - chr5.4:69186998-69187017 None:intergenic 40.0%
AAGAAGAATCTTGCGGAAGT+TGG + chr5.4:69186747-69186766 MS.gene39809:CDS 40.0%
AAGTTCAATGATGTTGGAGG+TGG + chr5.4:69184398-69184417 MS.gene39809:CDS 40.0%
AATCAGGCCGAAAAAAGGAT+TGG - chr5.4:69188612-69188631 None:intergenic 40.0%
AATGAAGATGCCGGTATTGT+AGG + chr5.4:69184988-69185007 MS.gene39809:intron 40.0%
ACAAGCTCCTGTAAATCATC+TGG - chr5.4:69188865-69188884 None:intergenic 40.0%
ACCCACATATATCCCAATTG+AGG + chr5.4:69185154-69185173 MS.gene39809:CDS 40.0%
ACGCTAAGTCTAAACTTCCT+GGG + chr5.4:69186557-69186576 MS.gene39809:CDS 40.0%
AGACAAAGTAGAAACTCAGG+TGG - chr5.4:69186583-69186602 None:intergenic 40.0%
AGCAGACAAAGTAGAAACTC+AGG - chr5.4:69186586-69186605 None:intergenic 40.0%
AGCTCCTGTTCTATCTTCAT+TGG - chr5.4:69183532-69183551 None:intergenic 40.0%
ATATACAAGGGATCAGGTCT+TGG - chr5.4:69184750-69184769 None:intergenic 40.0%
ATATGTAGGTTGTTAGCTCG+AGG + chr5.4:69187200-69187219 MS.gene39809:intron 40.0%
ATGCCATCAGTAGCAAGTAT+GGG - chr5.4:69186069-69186088 None:intergenic 40.0%
ATGTTTCTCATGGTTCACCT+GGG + chr5.4:69187040-69187059 MS.gene39809:CDS 40.0%
CATGCAGAAATCATGAGAAG+AGG - chr5.4:69187552-69187571 None:intergenic 40.0%
GAAGATTTCAATCCCAGGAA+TGG + chr5.4:69186140-69186159 MS.gene39809:CDS 40.0%
GAGAAGACTCTGTTCACAAT+CGG + chr5.4:69183905-69183924 MS.gene39809:CDS 40.0%
GCAAGATTCTTCTTCTTCCA+TGG - chr5.4:69186741-69186760 None:intergenic 40.0%
GGAAAAGACCTTGCTTATGA+CGG + chr5.4:69183881-69183900 MS.gene39809:CDS 40.0%
GGCAACAATCACCATAAACT+TGG - chr5.4:69188019-69188038 None:intergenic 40.0%
GGCCCCTGATATCTAAATAT+AGG + chr5.4:69187227-69187246 MS.gene39809:CDS 40.0%
GTAGGAACTTTCGACACAAT+AGG - chr5.4:69187003-69187022 None:intergenic 40.0%
GTGAATGTTGCTAACACAGA+TGG + chr5.4:69183646-69183665 MS.gene39809:CDS 40.0%
GTGAGGGATCTGATAAAATG+TGG + chr5.4:69186353-69186372 MS.gene39809:CDS 40.0%
GTGGTGTACTTGGATGTAAT+GGG + chr5.4:69184417-69184436 MS.gene39809:CDS 40.0%
GTGTCTGATAAGGAACATGA+AGG + chr5.4:69187307-69187326 MS.gene39809:CDS 40.0%
GTTCCTGCAATACCAAAAAG+AGG - chr5.4:69188172-69188191 None:intergenic 40.0%
TCATGTTCCTTATCAGACAC+TGG - chr5.4:69187307-69187326 None:intergenic 40.0%
TGACATTCCTTCAATTGCTG+CGG + chr5.4:69187068-69187087 MS.gene39809:CDS 40.0%
TGAGTACGAAAGGAAAACAC+TGG - chr5.4:69186906-69186925 None:intergenic 40.0%
TGGACAGTTCATGAAGTTTG+AGG + chr5.4:69189160-69189179 MS.gene39809:CDS 40.0%
TTGTAAATGACCGAGAGACT+AGG - chr5.4:69185248-69185267 None:intergenic 40.0%
TTTCCACAAGGGAAGATCTT+TGG - chr5.4:69185507-69185526 None:intergenic 40.0%
! ACCAAGAGTACAAGATAACC+GGG + chr5.4:69184828-69184847 MS.gene39809:CDS 40.0%
! ACTATCCTGAAGCAGTGTTT+TGG + chr5.4:69187588-69187607 MS.gene39809:intron 40.0%
! AGGTTTACTCTGAAGAAGAG+AGG + chr5.4:69185008-69185027 MS.gene39809:intron 40.0%
! ATTTTCTCAACTCTGACCAC+AGG - chr5.4:69186529-69186548 None:intergenic 40.0%
! CACGTTCTTTTGGATGAGAT+TGG + chr5.4:69188832-69188851 MS.gene39809:CDS 40.0%
! GTTTTCAACGCCTGTAAATC+AGG - chr5.4:69185641-69185660 None:intergenic 40.0%
! TTCAAACAGGTTGAAACGTG+TGG + chr5.4:69183979-69183998 MS.gene39809:intron 40.0%
! TTTCCCATACTTGCTACTGA+TGG + chr5.4:69186063-69186082 MS.gene39809:intron 40.0%
!! AATTACAGCTGGTCTTTGCA+CGG - chr5.4:69184866-69184885 None:intergenic 40.0%
!! AGGATCTCTCGCATTTTGAT+TGG - chr5.4:69184629-69184648 None:intergenic 40.0%
!! AGTGGATTGTCTCTGAACAT+AGG + chr5.4:69184467-69184486 MS.gene39809:CDS 40.0%
!! AGTTCACAAAAGTTGATGGG+AGG + chr5.4:69185717-69185736 MS.gene39809:CDS 40.0%
!! GTTCACAAAAGTTGATGGGA+GGG + chr5.4:69185718-69185737 MS.gene39809:CDS 40.0%
!! TCGCAGTAAGAGCTTTATTG+TGG - chr5.4:69185887-69185906 None:intergenic 40.0%
ACAACCATGATTGTACGTCC+TGG + chr5.4:69184580-69184599 MS.gene39809:CDS 45.0%
ACATTAGGTGGAACAATGGG+AGG - chr5.4:69183505-69183524 None:intergenic 45.0%
ACTCCAAAGATCTTCCCTTG+TGG + chr5.4:69185501-69185520 MS.gene39809:CDS 45.0%
AGATCAGAGTTCTTCCTCTC+AGG - chr5.4:69186610-69186629 None:intergenic 45.0%
AGCGCAGAAAAATTGCTCTG+CGG + chr5.4:69185087-69185106 MS.gene39809:CDS 45.0%
AGCTTCAGAACCACTCAAAG+TGG + chr5.4:69184449-69184468 MS.gene39809:CDS 45.0%
AGGTTGAAACGTGTGGATGT+TGG + chr5.4:69183986-69184005 MS.gene39809:intron 45.0%
ATGGCGAAGATTTCAATCCC+AGG + chr5.4:69186135-69186154 MS.gene39809:CDS 45.0%
ATTTCAATCCCAGGAATGGG+AGG + chr5.4:69186144-69186163 MS.gene39809:CDS 45.0%
CAACCATGATTGTACGTCCT+GGG + chr5.4:69184581-69184600 MS.gene39809:CDS 45.0%
CACGCTAAGTCTAAACTTCC+TGG + chr5.4:69186556-69186575 MS.gene39809:CDS 45.0%
CAGAGACAATCCACTTTGAG+TGG - chr5.4:69184462-69184481 None:intergenic 45.0%
CAGATACTGGTCATTAACCC+TGG - chr5.4:69186799-69186818 None:intergenic 45.0%
CTACTAAGACTCCAATGGCT+AGG + chr5.4:69183569-69183588 MS.gene39809:CDS 45.0%
CTAGCCATTGGAGTCTTAGT+AGG - chr5.4:69183571-69183590 None:intergenic 45.0%
CTCATCCAAAACACTGCTTC+AGG - chr5.4:69187596-69187615 None:intergenic 45.0%
CTTACCGACAGAAATAGCAG+TGG - chr5.4:69189022-69189041 None:intergenic 45.0%
CTTCCCTTGTGGAAAAGTCT+AGG + chr5.4:69185512-69185531 MS.gene39809:CDS 45.0%
GAAGTTGCTTGTCTTCGCAA+TGG + chr5.4:69184954-69184973 MS.gene39809:intron 45.0%
GAGATCCTTTCAGTCTTGAC+TGG + chr5.4:69184641-69184660 MS.gene39809:CDS 45.0%
GATGCCATCAGTAGCAAGTA+TGG - chr5.4:69186070-69186089 None:intergenic 45.0%
GATGTTTCTCATGGTTCACC+TGG + chr5.4:69187039-69187058 MS.gene39809:CDS 45.0%
GCAATTAGGAAGTCAACCAC+AGG - chr5.4:69184607-69184626 None:intergenic 45.0%
GCGTTGAAAACAAGCGACTA+TGG + chr5.4:69185650-69185669 MS.gene39809:CDS 45.0%
GCTTCCTACTAAGACTCCAA+TGG + chr5.4:69183564-69183583 MS.gene39809:CDS 45.0%
GGCTTCCCGACATTAATACA+TGG - chr5.4:69185128-69185147 None:intergenic 45.0%
GGTGGTGTACTTGGATGTAA+TGG + chr5.4:69184416-69184435 MS.gene39809:CDS 45.0%
GTTCAAGCCAGTGTCTGATA+AGG + chr5.4:69187297-69187316 MS.gene39809:CDS 45.0%
TACTGGTCATTAACCCTGGT+AGG - chr5.4:69186795-69186814 None:intergenic 45.0%
TACTTTGTCTGCTTCCTGAG+AGG + chr5.4:69186593-69186612 MS.gene39809:CDS 45.0%
TATCCTCTTCTTATCAGGGC+TGG - chr5.4:69184089-69184108 None:intergenic 45.0%
TATGTTCTCAGGGTACAAGC+AGG + chr5.4:69188797-69188816 MS.gene39809:intron 45.0%
TCCAATCTGCTATGCACACT+TGG + chr5.4:69189124-69189143 MS.gene39809:CDS 45.0%
TCCATGCCCAAAATGAGAGT+AGG - chr5.4:69187021-69187040 None:intergenic 45.0%
TCCTCAGTATCATCTTCTCC+AGG - chr5.4:69185041-69185060 None:intergenic 45.0%
TCCTCCAATGTGAGTACGAA+AGG - chr5.4:69186916-69186935 None:intergenic 45.0%
TCCTGGAGAAGATGATACTG+AGG + chr5.4:69185037-69185056 MS.gene39809:CDS 45.0%
TCCTTTCGTACTCACATTGG+AGG + chr5.4:69186912-69186931 MS.gene39809:intron 45.0%
TGAACTCAGCCAAATCATCG+AGG + chr5.4:69187885-69187904 MS.gene39809:CDS 45.0%
TGCTTCGAAAATTCCTCTGC+AGG + chr5.4:69184153-69184172 MS.gene39809:CDS 45.0%
TGGTATTGCAGGAACTGTTG+TGG + chr5.4:69188177-69188196 MS.gene39809:intron 45.0%
TTGGGCATGGATGTTTCTCA+TGG + chr5.4:69187030-69187049 MS.gene39809:CDS 45.0%
! CTGCCTAGACTTTTCCACAA+GGG - chr5.4:69185518-69185537 None:intergenic 45.0%
! GCAGAGGAATTTTCGAAGCA+AGG - chr5.4:69184153-69184172 None:intergenic 45.0%
! GGCTTTGGTATAGCGTTGAA+GGG - chr5.4:69185473-69185492 None:intergenic 45.0%
! TACTTGCTACTGATGGCATC+TGG + chr5.4:69186070-69186089 MS.gene39809:intron 45.0%
! TCCTACTCTCATTTTGGGCA+TGG + chr5.4:69187017-69187036 MS.gene39809:CDS 45.0%
! TCGGATCAGCTTGATAGTAG+AGG - chr5.4:69188376-69188395 None:intergenic 45.0%
! TCTGCCTAGACTTTTCCACA+AGG - chr5.4:69185519-69185538 None:intergenic 45.0%
!! AAGATCTTTGGAGTGTGGAC+AGG - chr5.4:69185495-69185514 None:intergenic 45.0%
!! AAGGGAAGATCTTTGGAGTG+TGG - chr5.4:69185500-69185519 None:intergenic 45.0%
!! ACTTTGAGTGGTTCTGAAGC+TGG - chr5.4:69184450-69184469 None:intergenic 45.0%
!! AGATCTTTGGAGTGTGGACA+GGG - chr5.4:69185494-69185513 None:intergenic 45.0%
!! AGCACCACTGCTATTTCTGT+CGG + chr5.4:69189015-69189034 MS.gene39809:CDS 45.0%
!! TAGTTCTGAGGAAAGACGAC+CGG + chr5.4:69187699-69187718 MS.gene39809:CDS 45.0%
!!! AAATATATATTGTTTTTTTT+TGG + chr5.4:69187933-69187952 MS.gene39809:intron 5.0%
!!! AATATATATTGTTTTTTTTT+GGG + chr5.4:69187934-69187953 MS.gene39809:intron 5.0%
!!! ATATTTATATTTTGATTAAT+AGG + chr5.4:69189070-69189089 MS.gene39809:intron 5.0%
AAGTTCCACCTCCCATTCCT+GGG - chr5.4:69186155-69186174 None:intergenic 50.0%
ACACCAGCCCTGATAAGAAG+AGG + chr5.4:69184083-69184102 MS.gene39809:CDS 50.0%
AGGTTGTTAGCTCGAGGCAA+TGG + chr5.4:69187206-69187225 MS.gene39809:intron 50.0%
AGTTTGGCAACTGTGGGATG+AGG - chr5.4:69189229-69189248 None:intergenic 50.0%
CAACCTTCGAACCCTGAGTT+CGG - chr5.4:69187261-69187280 None:intergenic 50.0%
CACTTGGCTGCTTCTCAAGT+TGG + chr5.4:69189140-69189159 MS.gene39809:CDS 50.0%
CATTGTCTGGAGATCGAGGT+TGG - chr5.4:69188068-69188087 None:intergenic 50.0%
CCATTGCCGATGCCTTAAAG+GGG + chr5.4:69184176-69184195 MS.gene39809:CDS 50.0%
CTCAGTTGCATGCCCCTTTA+AGG - chr5.4:69184191-69184210 None:intergenic 50.0%
GAAGGAATGTCAGATTGCCC+AGG - chr5.4:69187060-69187079 None:intergenic 50.0%
GAGCGAATGCTACGTAACTG+TGG + chr5.4:69185677-69185696 MS.gene39809:CDS 50.0%
GATGTTGGAGGTGGTGTACT+TGG + chr5.4:69184407-69184426 MS.gene39809:CDS 50.0%
GCCAAGTGTGCATAGCAGAT+TGG - chr5.4:69189128-69189147 None:intergenic 50.0%
GCCATTGCCGATGCCTTAAA+GGG + chr5.4:69184175-69184194 MS.gene39809:CDS 50.0%
GCCCGGTTATCTTGTACTCT+TGG - chr5.4:69184832-69184851 None:intergenic 50.0%
GGGATATATGTGGGTCGCTT+TGG - chr5.4:69185149-69185168 None:intergenic 50.0%
GGTGGGATGAATTCGCAGTT+AGG + chr5.4:69186955-69186974 MS.gene39809:CDS 50.0%
GTTTGGCAACTGTGGGATGA+GGG - chr5.4:69189228-69189247 None:intergenic 50.0%
TCAGTGCATAGCTCCTACCA+GGG + chr5.4:69186779-69186798 MS.gene39809:CDS 50.0%
TCTTCTCGCCGTCATAAGCA+AGG - chr5.4:69183892-69183911 None:intergenic 50.0%
TGATGTGCGAGGACTTGTGA+GGG + chr5.4:69186337-69186356 MS.gene39809:CDS 50.0%
TTACCAGGTGGCACATTGTC+TGG - chr5.4:69188081-69188100 None:intergenic 50.0%
TTAGGTGGAACAATGGGAGG+TGG - chr5.4:69183502-69183521 None:intergenic 50.0%
TTCTCAACTCTGACCACAGG+CGG - chr5.4:69186526-69186545 None:intergenic 50.0%
! ATTGATACCACCTTGGCTCG+AGG - chr5.4:69189201-69189220 None:intergenic 50.0%
! GAGGGTTTTGCAAGCTCCAA+GGG + chr5.4:69185736-69185755 MS.gene39809:CDS 50.0%
! GGGCTTTGGTATAGCGTTGA+AGG - chr5.4:69185474-69185493 None:intergenic 50.0%
!! AAGAAGAGAGGTGCTGTTCC+TGG + chr5.4:69185020-69185039 MS.gene39809:CDS 50.0%
!! TGCATGCCCCTTTAAGGCAT+CGG - chr5.4:69184185-69184204 None:intergenic 50.0%
AAGACCCTCATCCGCTCTTG+TGG - chr5.4:69185544-69185563 None:intergenic 55.0%
AAGACGGACGCCCTGTTGAA+GGG + chr5.4:69183798-69183817 MS.gene39809:CDS 55.0%
AAGACTCCAATGGCTAGGCG+TGG + chr5.4:69183574-69183593 MS.gene39809:CDS 55.0%
AGAAGCCACAAGAGCGGATG+AGG + chr5.4:69185536-69185555 MS.gene39809:CDS 55.0%
AGGCCCAGGACGTACAATCA+TGG - chr5.4:69184587-69184606 None:intergenic 55.0%
AGGGCATGTGTCCGAACTCA+GGG + chr5.4:69187247-69187266 MS.gene39809:CDS 55.0%
AGTAGAAACTCAGGTGGCCC+AGG - chr5.4:69186577-69186596 None:intergenic 55.0%
CAATGGCTAGGCGTGGCTTA+GGG + chr5.4:69183581-69183600 MS.gene39809:CDS 55.0%
CAGCGCCTTTCCCTTCAACA+GGG - chr5.4:69183811-69183830 None:intergenic 55.0%
CTAGGCAGAAGCCACAAGAG+CGG + chr5.4:69185530-69185549 MS.gene39809:CDS 55.0%
CTCAGTGCATAGCTCCTACC+AGG + chr5.4:69186778-69186797 MS.gene39809:CDS 55.0%
GAAGCCACAAGAGCGGATGA+GGG + chr5.4:69185537-69185556 MS.gene39809:CDS 55.0%
GAAGTTCCACCTCCCATTCC+TGG - chr5.4:69186156-69186175 None:intergenic 55.0%
GGCACATTGTCTGGAGATCG+AGG - chr5.4:69188072-69188091 None:intergenic 55.0%
GGCCATTGCCGATGCCTTAA+AGG + chr5.4:69184174-69184193 MS.gene39809:CDS 55.0%
GTGATGTGCGAGGACTTGTG+AGG + chr5.4:69186336-69186355 MS.gene39809:CDS 55.0%
GTGGAACAATGGGAGGTGGT+GGG - chr5.4:69183498-69183517 None:intergenic 55.0%
TAGGGCATGTGTCCGAACTC+AGG + chr5.4:69187246-69187265 MS.gene39809:CDS 55.0%
TCAATCCCAGGAATGGGAGG+TGG + chr5.4:69186147-69186166 MS.gene39809:CDS 55.0%
TCTCCAGACAATGTGCCACC+TGG + chr5.4:69188075-69188094 MS.gene39809:CDS 55.0%
TGGAACAATGGGAGGTGGTG+GGG - chr5.4:69183497-69183516 None:intergenic 55.0%
TGTCCGAACTCAGGGTTCGA+AGG + chr5.4:69187255-69187274 MS.gene39809:CDS 55.0%
TTGGAGTGTGGACAGGGCTT+TGG - chr5.4:69185488-69185507 None:intergenic 55.0%
! AGAGCGGATGAGGGTCTTGT+CGG + chr5.4:69185546-69185565 MS.gene39809:CDS 55.0%
! GGAGGGTTTTGCAAGCTCCA+AGG + chr5.4:69185735-69185754 MS.gene39809:CDS 55.0%
! TCTGAAGCTTCCTCGAGCCA+AGG + chr5.4:69189188-69189207 MS.gene39809:CDS 55.0%
!! CCCCTTTAAGGCATCGGCAA+TGG - chr5.4:69184179-69184198 None:intergenic 55.0%
!! CTGTTGAAGGGAAAGGCGCT+GGG + chr5.4:69183810-69183829 MS.gene39809:CDS 55.0%
!! GGGAGGCATTGATACCACCT+TGG - chr5.4:69189208-69189227 None:intergenic 55.0%
AGGAAGTCAACCACAGGCCC+AGG - chr5.4:69184601-69184620 None:intergenic 60.0%
AGGCGTGGCTTAGGGACGAA+GGG + chr5.4:69183589-69183608 MS.gene39809:CDS 60.0%
CCAATGGCTAGGCGTGGCTT+AGG + chr5.4:69183580-69183599 MS.gene39809:CDS 60.0%
CCAGCGCCTTTCCCTTCAAC+AGG - chr5.4:69183812-69183831 None:intergenic 60.0%
CCTAAGCCACGCCTAGCCAT+TGG - chr5.4:69183583-69183602 None:intergenic 60.0%
GAAGACGGACGCCCTGTTGA+AGG + chr5.4:69183797-69183816 MS.gene39809:CDS 60.0%
GAAGCTTCCTCGAGCCAAGG+TGG + chr5.4:69189191-69189210 MS.gene39809:CDS 60.0%
GATTGTACGTCCTGGGCCTG+TGG + chr5.4:69184588-69184607 MS.gene39809:CDS 60.0%
GCACGGAAATTCGCTCAGCC+CGG - chr5.4:69184849-69184868 None:intergenic 60.0%
GGACGCCCTGTTGAAGGGAA+AGG + chr5.4:69183803-69183822 MS.gene39809:CDS 60.0%
GGTGGAACAATGGGAGGTGG+TGG - chr5.4:69183499-69183518 None:intergenic 60.0%
TAGGCGTGGCTTAGGGACGA+AGG + chr5.4:69183588-69183607 MS.gene39809:CDS 60.0%
TCTGCACGCTGTGATGTGCG+AGG + chr5.4:69186326-69186345 MS.gene39809:CDS 60.0%
TGGCAACTGTGGGATGAGGG+AGG - chr5.4:69189225-69189244 None:intergenic 60.0%
! CCTGTTGAAGGGAAAGGCGC+TGG + chr5.4:69183809-69183828 MS.gene39809:CDS 60.0%
! GGAACAATGGGAGGTGGTGG+GGG - chr5.4:69183496-69183515 None:intergenic 60.0%
!! TTGAAGGGAAAGGCGCTGGG+AGG + chr5.4:69183813-69183832 MS.gene39809:CDS 60.0%
GTTTAGGCGTGCACCGCCTG+TGG + chr5.4:69186510-69186529 MS.gene39809:CDS 65.0%
! GCATCGGCAATGGCCTGCAG+AGG - chr5.4:69184169-69184188 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 69183463 69189286 69183463 ID=MS.gene39809
chr5.4 mRNA 69183463 69189286 69183463 ID=MS.gene39809.t1;Parent=MS.gene39809
chr5.4 exon 69183463 69183687 69183463 ID=MS.gene39809.t1.exon1;Parent=MS.gene39809.t1
chr5.4 CDS 69183463 69183687 69183463 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69183782 69183987 69183782 ID=MS.gene39809.t1.exon2;Parent=MS.gene39809.t1
chr5.4 CDS 69183782 69183987 69183782 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69184072 69184269 69184072 ID=MS.gene39809.t1.exon3;Parent=MS.gene39809.t1
chr5.4 CDS 69184072 69184269 69184072 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69184352 69184488 69184352 ID=MS.gene39809.t1.exon4;Parent=MS.gene39809.t1
chr5.4 CDS 69184352 69184488 69184352 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69184572 69184669 69184572 ID=MS.gene39809.t1.exon5;Parent=MS.gene39809.t1
chr5.4 CDS 69184572 69184669 69184572 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69184782 69184879 69184782 ID=MS.gene39809.t1.exon6;Parent=MS.gene39809.t1
chr5.4 CDS 69184782 69184879 69184782 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69185010 69185175 69185010 ID=MS.gene39809.t1.exon7;Parent=MS.gene39809.t1
chr5.4 CDS 69185010 69185175 69185010 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69185454 69185570 69185454 ID=MS.gene39809.t1.exon8;Parent=MS.gene39809.t1
chr5.4 CDS 69185454 69185570 69185454 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69185650 69185757 69185650 ID=MS.gene39809.t1.exon9;Parent=MS.gene39809.t1
chr5.4 CDS 69185650 69185757 69185650 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69186122 69186184 69186122 ID=MS.gene39809.t1.exon10;Parent=MS.gene39809.t1
chr5.4 CDS 69186122 69186184 69186122 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69186278 69186391 69186278 ID=MS.gene39809.t1.exon11;Parent=MS.gene39809.t1
chr5.4 CDS 69186278 69186391 69186278 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69186469 69186634 69186469 ID=MS.gene39809.t1.exon12;Parent=MS.gene39809.t1
chr5.4 CDS 69186469 69186634 69186469 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69186736 69186848 69186736 ID=MS.gene39809.t1.exon13;Parent=MS.gene39809.t1
chr5.4 CDS 69186736 69186848 69186736 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69186952 69187089 69186952 ID=MS.gene39809.t1.exon14;Parent=MS.gene39809.t1
chr5.4 CDS 69186952 69187089 69186952 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69187208 69187356 69187208 ID=MS.gene39809.t1.exon15;Parent=MS.gene39809.t1
chr5.4 CDS 69187208 69187356 69187208 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69187675 69187740 69187675 ID=MS.gene39809.t1.exon16;Parent=MS.gene39809.t1
chr5.4 CDS 69187675 69187740 69187675 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69187843 69187906 69187843 ID=MS.gene39809.t1.exon17;Parent=MS.gene39809.t1
chr5.4 CDS 69187843 69187906 69187843 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69187985 69188096 69187985 ID=MS.gene39809.t1.exon18;Parent=MS.gene39809.t1
chr5.4 CDS 69187985 69188096 69187985 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69188188 69188261 69188188 ID=MS.gene39809.t1.exon19;Parent=MS.gene39809.t1
chr5.4 CDS 69188188 69188261 69188188 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69188808 69188902 69188808 ID=MS.gene39809.t1.exon20;Parent=MS.gene39809.t1
chr5.4 CDS 69188808 69188902 69188808 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69189005 69189036 69189005 ID=MS.gene39809.t1.exon21;Parent=MS.gene39809.t1
chr5.4 CDS 69189005 69189036 69189005 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
chr5.4 exon 69189120 69189286 69189120 ID=MS.gene39809.t1.exon22;Parent=MS.gene39809.t1
chr5.4 CDS 69189120 69189286 69189120 ID=cds.MS.gene39809.t1;Parent=MS.gene39809.t1
Gene Sequence

>MS.gene39809

ATGAGTTCACAAGGACACAAGGACTATTTGCCCCCACCACCTCCCATTGTTCCACCTAATGTTAAACCAATGAAGATAGAACAGGAGCTTGCAAAGAAGAAGCTTCCTACTAAGACTCCAATGGCTAGGCGTGGCTTAGGGACGAAGGGAACTAAACTGCCTTTGTTAACAAATCACTTTGAAGTGAATGTTGCTAACACAGATGGGTTTTTCTTTCAGTATAGTGTATGTTTTGTATTTCATGATTCAGTTGTTTTCTTGCTAACATTTGTGTATTAATTTTTTGTTAAATGTTGACTCATACAATGTATTTGTGCAGGTTGCTTTGTTTTATGAAGACGGACGCCCTGTTGAAGGGAAAGGCGCTGGGAGGAAGATACTTGACAATGTTCAAAAAACATATGTTTCTGAGCTTAATGGAAAAGACCTTGCTTATGACGGCGAGAAGACTCTGTTCACAATCGGCTCTCTAGCTCATAAGAAGCTCGAGTTCACTGTTGTTGTTGAAGATGTCACTTCAAACAGGTTGAAACGTGTGGATGTTGGTTTTTGAAATTGGTGTTGTTCATGGTTTTTTATGTTTCTGATATTTAACTTTGCCTTTTATAGGAACAATGCGAACACCAGCCCTGATAAGAAGAGGATAAAAAAATCATACCGTTCGAAGACTTATAAAGTTGAAATCAGCCTTGCTTCGAAAATTCCTCTGCAGGCCATTGCCGATGCCTTAAAGGGGCATGCAACTGAGAGTTATCAAGAAGCCATTAGGGTTCTTGATATTATCTTGAGACAACATGCTGCTAAACAGTACGAACTTTAATAACTGCATGTATTTTTTATGTAATATAGAATAACAACAGTAATAATATCTTTGTAATATCTATCACAGGGGCTGTCTGCTAGTGCGCCAAAATTTCTTTCACAACGACCCAAAGAAGTTCAATGATGTTGGAGGTGGTGTACTTGGATGTAATGGGCTGCATTCCAGCTTCAGAACCACTCAAAGTGGATTGTCTCTGAACATAGGTTTGATCTTGATTCCTTTGTTGTCTATATTCTCATCTGAATATTTATTTGTCACATTTCTTTACTTCTTTCAATTTGTTTAGATGTGTCGACAACCATGATTGTACGTCCTGGGCCTGTGGTTGACTTCCTAATTGCCAATCAAAATGCGAGAGATCCTTTCAGTCTTGACTGGAATAAGGTAACCAGATTTTCTGATGCCTTTGTTTTGCTAATTGTTCCTTAACTTTTTGTTATACTCATTGTTCTTCGTTTAAACCAAGACCTGATCCCTTGTATATTTTATTGTGTAGGCTAAAAGGACTCTGAAGAATTTGAGGATCACGGCTAGCCCATCTAACCAAGAGTACAAGATAACCGGGCTGAGCGAATTTCCGTGCAAAGACCAGCTGTAATTTTTCTATCCCATTTTAAGTTGATTGTGTAATCTATTTATGACTTTCTTAATGTCTGGAATTGTTACTTGAAGTTGCTTGTCTTCGCAATGGATGTTGTTATTAATGAAGATGCCGGTATTGTAGGTTTACTCTGAAGAAGAGAGGTGCTGTTCCTGGAGAAGATGATACTGAGGAGATCACTGTTTATGATTATTTTGTCAAGCGCAGAAAAATTGCTCTGCGGTACTCAGCTGATCTGCCATGTATTAATGTCGGGAAGCCAAAGCGACCCACATATATCCCAATTGAGGTAGATTTGAAGCTTTATATTAGTTTAGTACTATCCTCATAATGTGTATTAGCTATTGGATATAATTTACCTAGTCTCTCGGTCATTTACAAAATCTATAAATTGGTCGCAGCTTTAATTTTGTGATGTAGATTAAGTGTCGACGATTCATTTTCTCAAGAAGCAGTGAATGGATTAATAAACTTTCAATTTTCTTTTCTTTCTGAAACTCTAATGATGTGTAGATTTATCTTCCAATACTTGATAACTATTTTCGAACATTTATGTGTTTTACTTAGCTTTGCTCTTTGGTATCCCTTCAACGCTATACCAAAGCCCTGTCCACACTCCAAAGATCTTCCCTTGTGGAAAAGTCTAGGCAGAAGCCACAAGAGCGGATGAGGGTCTTGTCGGATGTAAGTCTCTTTGATATATATTGACTAATGAATTGTCACATGAATGTCACTTCACTGAATATTATTTCCTGATTTACAGGCGTTGAAAACAAGCGACTATGGCTCTGAGCGAATGCTACGTAACTGTGGCATTTCAATAACGTCTGAGTTCACAAAAGTTGATGGGAGGGTTTTGCAAGCTCCAAGGGTATTGTTCTTTTATCATTGTTTTCATGAAAATACTTATTTGTTTTGTTTCCTTGTCTTCCCTTAATTCATTCGCTGTTATTGAGTGTCTTCTATTGATTTTTCTTCAAAATATTGCTAGAAAAAGCCACAATAAAGCTCTTACTGCGAAGTTATTTTCAGCAATTGAATAATCACCATTTCTTTGAATGCTTGACATCATTTTTAAAATAATCACCATTACTTTTGGAAGAAATTTTTCTGTTCCTGTTTGATAGTTATATTGTTGTGCATGTTCTTTAGTGAGATGCTCTTAATTGCGAAATGTTTCCCATACTTGCTACTGATGGCATCTGGCATGTAATTATCTCTATTGAGTTATACAGTTGATGTTTGGGAATGGCGAAGATTTCAATCCCAGGAATGGGAGGTGGAACTTCAATAATAAGGTATTCATGACAAATCTGAGCAATACTTTTATCTATGTTTTGTTGATGGCTTTCATCAACATTCTTTTTCTAATGATTTAATATTGTTTCCAGAAAATTGTGGAACCTGTTAAAATAAAAAACTGGGCTGTGGTGAACTTTTCTGCACGCTGTGATGTGCGAGGACTTGTGAGGGATCTGATAAAATGTGGAAGAATGAAAGGAATTGTAAGTTCTGTTGCAGCATATTTACTGACATGCATAAAAAGGTGCTAACTCTATTCTATTTCGTTTGCTTTTGGCAGATTCTTGAACCACCTTTTGATGTCTTTGAAGAAAATGGTCAGTTTAGGCGTGCACCGCCTGTGGTCAGAGTTGAGAAAATGTTCGAACACGCTAAGTCTAAACTTCCTGGGCCACCTGAGTTTCTACTTTGTCTGCTTCCTGAGAGGAAGAACTCTGATCTTTATGGTTAGTTCCTTGATATATTTCCATGTTCTATTTACCTTTTTTTTAATGCATTTGTTAAATGGCCTTCTTAATAAAAATTAATTGGAAATTTACTTGTGAAGGTCCATGGAAGAAGAAGAATCTTGCGGAAGTTGGAATCGTTACTCAGTGCATAGCTCCTACCAGGGTTAATGACCAGTATCTGACAAATGTTTTGCTGAAGATCAATGCAAAGGTATATTAATTCTTCCTTTGGTTTCTTTTAATATTATTATTTTCTAGTTTGTCACCAGTGTTTTCCTTTCGTACTCACATTGGAGGATTTTATTCTTTTGTAGCTTGGTGGGATGAATTCGCAGTTAGGCGTTGAATACTCTAGATCCATCCCTATTGTGTCGAAAGTTCCTACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAATCTGACATTCCTTCAATTGCTGCGGTAATAAAAGTTCTTATTGTGTGTTCTTTTGAAAATATGTCTCTAAGGTGGTATTTTATGGGTACACTGTTATCTAAATGTTTTTTTATTTTTCCCATGTAAATGTCTACATATGTAGGTTGTTAGCTCGAGGCAATGGCCCCTGATATCTAAATATAGGGCATGTGTCCGAACTCAGGGTTCGAAGGTTGAGATGATTGACAATTTGTTCAAGCCAGTGTCTGATAAGGAACATGAAGGAATTATAAAAGATGAAGGAATTATAAGGTATATTTATTTTTGATAACCAAGTTTTTCCTTGAAATTATTTCAGGACGACTAATAGCTCCCGATATTTTATTGCATGTCGATAAGGTCTAATATTCAAAGATCGATTGGAAGCAAGAATCCTAATTTTTTCAAAGACTGACTTTTCTGTGTGAAAAAAAGATCAAAGTTTTTATAGTTGTATAGCACACTCCTCTTCTCATGATTTCTGCATGATCATAAGATCATTGAACTATCCTGAAGCAGTGTTTTGGATGAGTTATAGCAGTTTTCAGTTGATGGTTTATTTATTTTGGGAATTGGTTTTACGATATGCAGGGAAATTTTGCTTGATTTTTTTCGTAGTTCTGAGGAAAGACGACCGGACAATATCATCATTTTCAGGTTAACTTACTTTCCCAATTTTCTACCATCGTTTTCTTCTACTTGTTGGTTTATTGCTACTAGTATGTATGCTTATAATTAATATAATTAATGTTATTGTAGGGATGGTGTTAGTGAGTCTCAGTTCAACCAAGTTTTGAACGTTGAACTCAGCCAAATCATCGAGGTTCTTAAATTGATCAAATTTGCATTAAATATATATTGTTTTTTTTTGGGGGTTTAATCTAAATCTTTCAAGTTTTAGGCTTGTAAATTTCTTGATGAAACTTGGAACCCCAAGTTTATGGTGATTGTTGCCCAGAAGAATCATCATACAAAATTCTTCCAACCTCGATCTCCAGACAATGTGCCACCTGGTAATCAGCTTGTTTTGAAGTCTGTCATAGTTCCATTTTTTTATATATAAAATTTGTTTCATGTCTAGCTAACCTCTTTTTGGTATTGCAGGAACTGTTGTGGACAGCAAAATTTGTCATCCTAGGAATTATGATTTTTATATGTGTGCTCATGCTGGAATGATTGTGAGTATCTTCTACTCTTTTTCTGTTGATGTTCATTTCAGCTGAGCTTGATTTTTGAAGATGCATCGCTTCTTTTCTCTGATCAAATGTGTATATATGTTCTTTTAGGCGCCTCTACTATCAAGCTGATCCGAGTTCAATATATTTATTTTCATTGGGAAAAATAGAATTAAAAATACACAAAATCTTGATTACTGGTTTTTTCTTTGCCGTTTATCATGTAATTTGGGGATGGTTAATATATGACACGTTTTTCATTTCTTGTTCATTAGTACGATAGTGTTTCTTTGTGTTAAATTCAATTTATATCGTATGTCAGTGATTTTGTGTTATGTCTGCTCATTACTCCAATCCTTTTTTCGGCCTGATTTACATGGTTATAATTATGATTGTTTTTTTAACACGATATAATTATGATTGTTACCTTGAAGACTTCAAATTATCTTTGTCAACCATTCTGATAATAATCTGTAATCCTTTTTGCTTGCATTCTATCATGAAATTCAGTAGCAAACCTTGTACTTATTTATCAAACTATGTTCTCAGGGTACAAGCAGGCCAACACATTATCACGTTCTTTTGGATGAGATTGGCTTTTCTCCAGATGATTTACAGGAGCTTGTGCACTCTCTATCTTATGTGTAAGTTTACATTTGGATTTGATTGCTTTGAAATTATGTTTCTGTAATTCTGATATTCAATTAATGTAGTAGCTTATAAAAATATTTGTTGTATGACAACAGTTATCAGCGGAGCACCACTGCTATTTCTGTCGGTAAGTTCTATCAAGAATTATATTTATTTGTGCATATTTATATTTTGATTAATAGGTGCTAATTAGTAAAAACTTATATGCAGTTGCTCCAATCTGCTATGCACACTTGGCTGCTTCTCAAGTTGGACAGTTCATGAAGTTTGAGGATAAGTCTGAAGCTTCCTCGAGCCAAGGTGGTATCAATGCCTCCCTCATCCCACAGTTGCCAAACTTACATAAGAGAGTCTGCAATTCCATGTTTTTTGTCTGA

Protein sequence

>MS.gene39809.t1

MSSQGHKDYLPPPPPIVPPNVKPMKIEQELAKKKLPTKTPMARRGLGTKGTKLPLLTNHFEVNVANTDGFFFQYSVALFYEDGRPVEGKGAGRKILDNVQKTYVSELNGKDLAYDGEKTLFTIGSLAHKKLEFTVVVEDVTSNRNNANTSPDKKRIKKSYRSKTYKVEISLASKIPLQAIADALKGHATESYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKKFNDVGGGVLGCNGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNARDPFSLDWNKAKRTLKNLRITASPSNQEYKITGLSEFPCKDQLFTLKKRGAVPGEDDTEEITVYDYFVKRRKIALRYSADLPCINVGKPKRPTYIPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMRVLSDALKTSDYGSERMLRNCGISITSEFTKVDGRVLQAPRLMFGNGEDFNPRNGRWNFNNKKIVEPVKIKNWAVVNFSARCDVRGLVRDLIKCGRMKGIILEPPFDVFEENGQFRRAPPVVRVEKMFEHAKSKLPGPPEFLLCLLPERKNSDLYGPWKKKNLAEVGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSQLGVEYSRSIPIVSKVPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQGSKVEMIDNLFKPVSDKEHEGIIKDEGIIREILLDFFRSSEERRPDNIIIFRDGVSESQFNQVLNVELSQIIEACKFLDETWNPKFMVIVAQKNHHTKFFQPRSPDNVPPGTVVDSKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSEASSSQGGINASLIPQLPNLHKRVCNSMFFV